HEADER TRANSLATION 21-DEC-04 1YBY TITLE CONSERVED HYPOTHETICAL PROTEIN CTH-95 FROM CLOSTRIDIUM THERMOCELLUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION ELONGATION FACTOR P; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EF-P, TRANSLATION INITIATION FACTOR 5A, EIF-5A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 1515; SOURCE 4 ATCC: 27405; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CONSERVED HYPOTHETICAL PROTEIN, CLOSTRIDIUM THERMOCELLUM, STRUCTURAL KEYWDS 2 GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, SOUTHEAST COLLABORATORY KEYWDS 3 FOR STRUCTURAL GENOMICS, SECSG, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR M.ZHAO,W.ZHOU,J.CHANG,J.HABEL,I.KATAEVA,H.XU,L.CHEN,D.LEE,J.NGUYEN, AUTHOR 2 S.-H.CHANG,P.HORANYI,Q.FLORENCE,W.TEMPEL,D.LIN,H.ZHANG,L.LJUNDAHL, AUTHOR 3 Z.-J.LIU,J.ROSE,B.-C.WANG,SOUTHEAST COLLABORATORY FOR STRUCTURAL AUTHOR 4 GENOMICS (SECSG) REVDAT 5 20-NOV-24 1YBY 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 1YBY 1 REMARK REVDAT 3 24-FEB-09 1YBY 1 VERSN REVDAT 2 24-OCT-06 1YBY 1 KEYWDS JRNL REMARK MASTER REVDAT 1 01-FEB-05 1YBY 0 JRNL AUTH M.ZHAO,W.ZHOU,J.CHANG,J.HABEL,I.KATAEVA,H.XU,L.CHEN,D.LEE, JRNL AUTH 2 J.NGUYEN,S.-H.CHANG,P.HORANYI,Q.FLORENCE,W.TEMPEL,D.LIN, JRNL AUTH 3 H.ZHANG,L.LJUNDAHL,Z.-J.LIU,J.ROSE,B.-C.WANG JRNL TITL CONSERVED HYPOTHETICAL PROTEIN CTH-95 FROM CLOSTRIDIUM JRNL TITL 2 THERMOCELLUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.093 REMARK 3 FREE R VALUE TEST SET COUNT : 1054 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2497 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2726 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65500 REMARK 3 B22 (A**2) : 0.46700 REMARK 3 B33 (A**2) : -0.13100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.31100 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2778 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2528 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3758 ; 1.408 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5872 ; 3.764 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 349 ; 6.337 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;34.758 ;25.410 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 467 ;12.822 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;26.603 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 428 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3089 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 539 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 399 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2216 ; 0.220 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1323 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1348 ; 0.113 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 153 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.159 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 44 ; 0.208 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.184 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1753 ; 0.886 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 724 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2839 ; 1.580 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2373 ; 0.814 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1025 ; 2.439 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1804 ; 0.000 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 919 ; 3.774 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3499 ; 1.742 ; 4.500 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1YBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39625 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAS REMARK 200 SOFTWARE USED: SOLVE 2.03, RESOLVE 2.03 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M DIPOTASSIUM HYDROGEN PHOSPHATE, REMARK 280 0.1M HEPES, PH 7.6, SITTING DROP, VAPOR DIFFUSION, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.45750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.73800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.45750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.73800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE BIOLOGICAL UNIT IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -29 REMARK 465 GLY A -28 REMARK 465 SER A -27 REMARK 465 SER A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 GLY A -17 REMARK 465 LEU A -16 REMARK 465 VAL A -15 REMARK 465 PRO A -14 REMARK 465 ARG A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 GLN A -10 REMARK 465 SER A -9 REMARK 465 THR A -8 REMARK 465 SER A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 LYS A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 LEU A 0 REMARK 465 GLY A 31 REMARK 465 LYS A 32 REMARK 465 GLU A 137 REMARK 465 PRO A 138 REMARK 465 GLY A 139 REMARK 465 PHE A 140 REMARK 465 LYS A 141 REMARK 465 GLY A 142 REMARK 465 ASP A 143 REMARK 465 MSE B -29 REMARK 465 GLY B -28 REMARK 465 SER B -27 REMARK 465 SER B -26 REMARK 465 HIS B -25 REMARK 465 HIS B -24 REMARK 465 HIS B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 SER B -19 REMARK 465 SER B -18 REMARK 465 GLY B -17 REMARK 465 LEU B -16 REMARK 465 VAL B -15 REMARK 465 PRO B -14 REMARK 465 ARG B -13 REMARK 465 GLY B -12 REMARK 465 SER B -11 REMARK 465 GLN B -10 REMARK 465 SER B -9 REMARK 465 THR B -8 REMARK 465 SER B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 LYS B -4 REMARK 465 LYS B -3 REMARK 465 ALA B -2 REMARK 465 GLY B -1 REMARK 465 LEU B 0 REMARK 465 LYS B 141 REMARK 465 GLY B 142 REMARK 465 ASP B 143 REMARK 465 THR B 144 REMARK 465 ALA B 145 REMARK 465 THR B 146 REMARK 465 GLY B 147 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 2 CG2 CD1 REMARK 470 LYS A 59 CE NZ REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 HIS A 64 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 67 NE CZ NH1 NH2 REMARK 470 LYS A 68 CD CE NZ REMARK 470 ASP A 76 CB CG OD1 OD2 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 ASP A 100 CG OD1 OD2 REMARK 470 LYS A 106 CE NZ REMARK 470 LYS A 161 NZ REMARK 470 LYS A 168 CE NZ REMARK 470 ARG A 177 CZ NH1 NH2 REMARK 470 ILE B 2 CG1 CD1 REMARK 470 LYS B 8 NZ REMARK 470 GLN B 18 CB CG CD OE1 NE2 REMARK 470 LYS B 29 CE NZ REMARK 470 LYS B 32 CD CE NZ REMARK 470 LYS B 40 CE NZ REMARK 470 LYS B 42 CE NZ REMARK 470 ILE B 50 CG2 CD1 REMARK 470 GLU B 51 CD OE1 OE2 REMARK 470 LYS B 59 CD CE NZ REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 GLU B 66 CG CD OE1 OE2 REMARK 470 LYS B 95 CD CE NZ REMARK 470 LYS B 117 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 70 CG - SE - CE ANGL. DEV. = -17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 73 -64.33 -95.13 REMARK 500 LYS A 117 44.48 39.88 REMARK 500 LEU B 73 -72.45 -89.91 REMARK 500 HIS B 116 -74.44 -99.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1005 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CTH-95 RELATED DB: TARGETDB DBREF 1YBY A 1 185 GB 48857307 ZP_00311326 1 185 DBREF 1YBY B 1 185 GB 48857307 ZP_00311326 1 185 SEQADV 1YBY MSE A -29 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLY A -28 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER A -27 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER A -26 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS A -25 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS A -24 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS A -23 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS A -22 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS A -21 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS A -20 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER A -19 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER A -18 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLY A -17 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LEU A -16 GB 48857307 CLONING ARTIFACT SEQADV 1YBY VAL A -15 GB 48857307 CLONING ARTIFACT SEQADV 1YBY PRO A -14 GB 48857307 CLONING ARTIFACT SEQADV 1YBY ARG A -13 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLY A -12 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER A -11 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLN A -10 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER A -9 GB 48857307 CLONING ARTIFACT SEQADV 1YBY THR A -8 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER A -7 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LEU A -6 GB 48857307 CLONING ARTIFACT SEQADV 1YBY TYR A -5 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LYS A -4 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LYS A -3 GB 48857307 CLONING ARTIFACT SEQADV 1YBY ALA A -2 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLY A -1 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LEU A 0 GB 48857307 CLONING ARTIFACT SEQADV 1YBY MSE A 1 GB 48857307 MET 1 MODIFIED RESIDUE SEQADV 1YBY MSE A 60 GB 48857307 MET 60 MODIFIED RESIDUE SEQADV 1YBY MSE A 70 GB 48857307 MET 70 MODIFIED RESIDUE SEQADV 1YBY MSE A 83 GB 48857307 MET 83 MODIFIED RESIDUE SEQADV 1YBY MSE A 182 GB 48857307 MET 182 MODIFIED RESIDUE SEQADV 1YBY MSE B -29 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLY B -28 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER B -27 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER B -26 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS B -25 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS B -24 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS B -23 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS B -22 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS B -21 GB 48857307 CLONING ARTIFACT SEQADV 1YBY HIS B -20 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER B -19 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER B -18 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLY B -17 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LEU B -16 GB 48857307 CLONING ARTIFACT SEQADV 1YBY VAL B -15 GB 48857307 CLONING ARTIFACT SEQADV 1YBY PRO B -14 GB 48857307 CLONING ARTIFACT SEQADV 1YBY ARG B -13 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLY B -12 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER B -11 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLN B -10 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER B -9 GB 48857307 CLONING ARTIFACT SEQADV 1YBY THR B -8 GB 48857307 CLONING ARTIFACT SEQADV 1YBY SER B -7 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LEU B -6 GB 48857307 CLONING ARTIFACT SEQADV 1YBY TYR B -5 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LYS B -4 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LYS B -3 GB 48857307 CLONING ARTIFACT SEQADV 1YBY ALA B -2 GB 48857307 CLONING ARTIFACT SEQADV 1YBY GLY B -1 GB 48857307 CLONING ARTIFACT SEQADV 1YBY LEU B 0 GB 48857307 CLONING ARTIFACT SEQADV 1YBY MSE B 1 GB 48857307 MET 1 MODIFIED RESIDUE SEQADV 1YBY MSE B 60 GB 48857307 MET 60 MODIFIED RESIDUE SEQADV 1YBY MSE B 70 GB 48857307 MET 70 MODIFIED RESIDUE SEQADV 1YBY MSE B 83 GB 48857307 MET 83 MODIFIED RESIDUE SEQADV 1YBY MSE B 182 GB 48857307 MET 182 MODIFIED RESIDUE SEQRES 1 A 215 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 215 LEU VAL PRO ARG GLY SER GLN SER THR SER LEU TYR LYS SEQRES 3 A 215 LYS ALA GLY LEU MSE ILE SER ALA GLY ASP PHE LYS ASN SEQRES 4 A 215 GLY VAL THR PHE GLU LEU ASP GLY GLN ILE PHE GLN VAL SEQRES 5 A 215 ILE GLU PHE GLN HIS VAL LYS PRO GLY LYS GLY ALA ALA SEQRES 6 A 215 PHE VAL ARG THR LYS LEU LYS ASN ILE VAL THR GLY ALA SEQRES 7 A 215 THR ILE GLU LYS THR PHE ASN PRO THR ASP LYS MSE PRO SEQRES 8 A 215 LYS ALA HIS ILE GLU ARG LYS ASP MSE GLN TYR LEU TYR SEQRES 9 A 215 ASN ASP GLY ASP LEU TYR TYR PHE MSE ASP THR GLU THR SEQRES 10 A 215 PHE GLU GLN LEU PRO LEU GLY LYS ASP LYS ILE GLY ASP SEQRES 11 A 215 ALA LEU LYS PHE VAL LYS GLU ASN GLU ILE VAL LYS VAL SEQRES 12 A 215 LEU SER HIS LYS GLY ASN VAL PHE GLY ILE GLU PRO PRO SEQRES 13 A 215 ASN PHE VAL GLU LEU GLU VAL THR ASP THR GLU PRO GLY SEQRES 14 A 215 PHE LYS GLY ASP THR ALA THR GLY ALA THR LYS PRO ALA SEQRES 15 A 215 ILE VAL GLU THR GLY ALA SER ILE LYS VAL PRO LEU PHE SEQRES 16 A 215 VAL ASN LYS GLY ASP ILE ILE ARG ILE ASP THR ARG THR SEQRES 17 A 215 GLY GLU TYR MSE GLU ARG VAL SEQRES 1 B 215 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 215 LEU VAL PRO ARG GLY SER GLN SER THR SER LEU TYR LYS SEQRES 3 B 215 LYS ALA GLY LEU MSE ILE SER ALA GLY ASP PHE LYS ASN SEQRES 4 B 215 GLY VAL THR PHE GLU LEU ASP GLY GLN ILE PHE GLN VAL SEQRES 5 B 215 ILE GLU PHE GLN HIS VAL LYS PRO GLY LYS GLY ALA ALA SEQRES 6 B 215 PHE VAL ARG THR LYS LEU LYS ASN ILE VAL THR GLY ALA SEQRES 7 B 215 THR ILE GLU LYS THR PHE ASN PRO THR ASP LYS MSE PRO SEQRES 8 B 215 LYS ALA HIS ILE GLU ARG LYS ASP MSE GLN TYR LEU TYR SEQRES 9 B 215 ASN ASP GLY ASP LEU TYR TYR PHE MSE ASP THR GLU THR SEQRES 10 B 215 PHE GLU GLN LEU PRO LEU GLY LYS ASP LYS ILE GLY ASP SEQRES 11 B 215 ALA LEU LYS PHE VAL LYS GLU ASN GLU ILE VAL LYS VAL SEQRES 12 B 215 LEU SER HIS LYS GLY ASN VAL PHE GLY ILE GLU PRO PRO SEQRES 13 B 215 ASN PHE VAL GLU LEU GLU VAL THR ASP THR GLU PRO GLY SEQRES 14 B 215 PHE LYS GLY ASP THR ALA THR GLY ALA THR LYS PRO ALA SEQRES 15 B 215 ILE VAL GLU THR GLY ALA SER ILE LYS VAL PRO LEU PHE SEQRES 16 B 215 VAL ASN LYS GLY ASP ILE ILE ARG ILE ASP THR ARG THR SEQRES 17 B 215 GLY GLU TYR MSE GLU ARG VAL MODRES 1YBY MSE A 1 MET SELENOMETHIONINE MODRES 1YBY MSE A 60 MET SELENOMETHIONINE MODRES 1YBY MSE A 70 MET SELENOMETHIONINE MODRES 1YBY MSE A 83 MET SELENOMETHIONINE MODRES 1YBY MSE A 182 MET SELENOMETHIONINE MODRES 1YBY MSE B 1 MET SELENOMETHIONINE MODRES 1YBY MSE B 60 MET SELENOMETHIONINE MODRES 1YBY MSE B 70 MET SELENOMETHIONINE MODRES 1YBY MSE B 83 MET SELENOMETHIONINE MODRES 1YBY MSE B 182 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 60 8 HET MSE A 70 8 HET MSE A 83 8 HET MSE A 182 8 HET MSE B 1 8 HET MSE B 60 8 HET MSE B 70 8 HET MSE B 83 8 HET MSE B 182 8 HET UNX A1004 1 HET UNX A1005 1 HET UNX B1001 1 HET UNX B1002 1 HET UNX B1003 1 HETNAM MSE SELENOMETHIONINE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 UNX 5(X) FORMUL 8 HOH *198(H2 O) HELIX 1 1 GLY A 5 PHE A 7 5 3 HELIX 2 2 LYS A 95 GLY A 99 1 5 HELIX 3 3 GLY B 5 PHE B 7 5 3 HELIX 4 4 LYS B 95 GLY B 99 1 5 SHEET 1 A 2 ILE A 2 SER A 3 0 SHEET 2 A 2 LYS A 59 MSE A 60 -1 O MSE A 60 N ILE A 2 SHEET 1 B 4 THR A 12 LEU A 15 0 SHEET 2 B 4 GLN A 18 VAL A 28 -1 O PHE A 20 N PHE A 13 SHEET 3 B 4 PHE A 36 ASN A 43 -1 O PHE A 36 N VAL A 28 SHEET 4 B 4 THR A 49 PHE A 54 -1 O ILE A 50 N LEU A 41 SHEET 1 C 5 GLN A 90 GLY A 94 0 SHEET 2 C 5 LEU A 79 MSE A 83 -1 N TYR A 80 O LEU A 93 SHEET 3 C 5 GLU A 66 ASP A 76 -1 N TYR A 74 O TYR A 81 SHEET 4 C 5 ILE A 110 HIS A 116 -1 O VAL A 113 N LYS A 68 SHEET 5 C 5 ASN A 119 GLU A 124 -1 O GLY A 122 N LEU A 114 SHEET 1 D 5 SER A 159 PRO A 163 0 SHEET 2 D 5 THR A 149 VAL A 154 -1 N LYS A 150 O VAL A 162 SHEET 3 D 5 PHE A 128 ASP A 135 -1 N ASP A 135 O ILE A 153 SHEET 4 D 5 ILE A 171 ASP A 175 -1 O ILE A 172 N LEU A 131 SHEET 5 D 5 GLU A 180 ARG A 184 -1 O GLU A 183 N ARG A 173 SHEET 1 E 2 ILE B 2 SER B 3 0 SHEET 2 E 2 LYS B 59 MSE B 60 -1 O MSE B 60 N ILE B 2 SHEET 1 F 4 THR B 12 GLU B 14 0 SHEET 2 F 4 ILE B 19 VAL B 28 -1 O PHE B 20 N PHE B 13 SHEET 3 F 4 PHE B 36 ASN B 43 -1 O LYS B 40 N GLU B 24 SHEET 4 F 4 THR B 49 PHE B 54 -1 O LYS B 52 N THR B 39 SHEET 1 G 5 GLN B 90 GLY B 94 0 SHEET 2 G 5 LEU B 79 MSE B 83 -1 N TYR B 80 O LEU B 93 SHEET 3 G 5 GLU B 66 ASP B 76 -1 N LEU B 73 O TYR B 81 SHEET 4 G 5 ILE B 110 SER B 115 -1 O SER B 115 N GLU B 66 SHEET 5 G 5 VAL B 120 GLU B 124 -1 O GLU B 124 N LYS B 112 SHEET 1 H 5 SER B 159 PRO B 163 0 SHEET 2 H 5 THR B 149 VAL B 154 -1 N LYS B 150 O VAL B 162 SHEET 3 H 5 PHE B 128 THR B 136 -1 N ASP B 135 O ILE B 153 SHEET 4 H 5 ILE B 171 ASP B 175 -1 O ILE B 172 N LEU B 131 SHEET 5 H 5 GLU B 180 ARG B 184 -1 O GLU B 183 N ARG B 173 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C LYS A 59 N MSE A 60 1555 1555 1.34 LINK C MSE A 60 N PRO A 61 1555 1555 1.35 LINK C ASP A 69 N MSE A 70 1555 1555 1.33 LINK C MSE A 70 N GLN A 71 1555 1555 1.32 LINK C PHE A 82 N MSE A 83 1555 1555 1.33 LINK C MSE A 83 N ASP A 84 1555 1555 1.33 LINK C TYR A 181 N MSE A 182 1555 1555 1.32 LINK C MSE A 182 N GLU A 183 1555 1555 1.32 LINK C MSE B 1 N ILE B 2 1555 1555 1.34 LINK C LYS B 59 N MSE B 60 1555 1555 1.33 LINK C MSE B 60 N PRO B 61 1555 1555 1.35 LINK C ASP B 69 N MSE B 70 1555 1555 1.33 LINK C MSE B 70 N GLN B 71 1555 1555 1.32 LINK C PHE B 82 N MSE B 83 1555 1555 1.32 LINK C MSE B 83 N ASP B 84 1555 1555 1.34 LINK C TYR B 181 N MSE B 182 1555 1555 1.32 LINK C MSE B 182 N GLU B 183 1555 1555 1.32 SITE 1 AC1 5 GLU A 89 GLN A 90 UNX A1004 PHE B 165 SITE 2 AC1 5 ASN B 167 SITE 1 AC2 2 LYS B 106 GLU B 107 SITE 1 AC3 1 GLY B 17 SITE 1 AC4 3 GLU A 89 GLN A 90 UNX B1001 SITE 1 AC5 1 ARG A 173 CRYST1 114.915 55.476 88.462 90.00 120.84 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008700 0.000000 0.005200 0.00000 SCALE2 0.000000 0.018000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013200 0.00000 HETATM 1 N MSE A 1 50.845 48.042 11.096 1.00 36.65 N HETATM 2 CA MSE A 1 51.341 46.681 11.480 1.00 37.31 C HETATM 3 C MSE A 1 50.880 46.265 12.878 1.00 35.92 C HETATM 4 O MSE A 1 50.925 47.065 13.825 1.00 35.98 O HETATM 5 CB MSE A 1 52.870 46.611 11.453 1.00 38.25 C HETATM 6 CG MSE A 1 53.517 46.959 10.136 1.00 43.16 C HETATM 7 SE MSE A 1 53.074 45.759 8.659 1.00 54.91 SE HETATM 8 CE MSE A 1 54.114 44.181 9.149 1.00 52.42 C