HEADER OXIDOREDUCTASE 23-DEC-04 1YD7 TITLE CONSERVED HYPOTHETICAL PROTEIN PFU-1647980-001 FROM PYROCOCCUS TITLE 2 FURIOSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-KETO ACID:FERREDOXIN OXIDOREDUCTASE SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS, KEYWDS 2 SECSG, PROTEIN STRUCTURE INITIATIVE, PSI, CONSERVED HYPOTHETICAL KEYWDS 3 PROTEIN, PYROCOCCUS FURIOSUS, HYPERTHERMOPHILE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.HORANYI,Q.FLORENCE,W.ZHOU,J.CHANG,M.ZHAO,J.HABEL,H.XU,L.CHEN,D.LEE, AUTHOR 2 D.NGUYEN,S.-H.CHANG,W.TEMPEL,D.LIN,H.ZHANG,J.PRAISSMAN,F.E.JENNEY AUTHOR 3 JR.,M.W.W.ADAMS,Z.-J.LIU,J.P.ROSE,B.-C.WANG,SOUTHEAST COLLABORATORY AUTHOR 4 FOR STRUCTURAL GENOMICS (SECSG) REVDAT 5 20-NOV-24 1YD7 1 REMARK REVDAT 4 06-MAR-24 1YD7 1 REMARK SEQADV LINK REVDAT 3 11-OCT-17 1YD7 1 REMARK REVDAT 2 24-FEB-09 1YD7 1 VERSN REVDAT 1 08-FEB-05 1YD7 0 JRNL AUTH P.HORANYI,Q.FLORENCE,W.ZHOU,J.CHANG,M.ZHAO,J.HABEL,H.XU, JRNL AUTH 2 L.CHEN,D.LEE,D.NGUYEN,S.-H.CHANG,W.TEMPEL,D.LIN,H.ZHANG, JRNL AUTH 3 J.PRAISSMAN,F.E.JENNEY JR.,M.W.W.ADAMS,Z.-J.LIU,J.P.ROSE, JRNL AUTH 4 B.-C.WANG,SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS JRNL AUTH 5 (SECSG) JRNL TITL CONSERVED HYPOTHETICAL PROTEIN PFU-1647980-001 FROM JRNL TITL 2 PYROCOCCUS FURIOSUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 630 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 873 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1270 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.212 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.577 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1305 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1223 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1778 ; 1.450 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2824 ; 0.889 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 166 ; 6.780 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;32.136 ;24.151 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 202 ;15.344 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;15.657 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 210 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1449 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 258 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 245 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1188 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 642 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 758 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 47 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.177 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 28 ; 0.220 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.118 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 919 ; 3.043 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 338 ; 0.708 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1370 ; 4.059 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 497 ; 2.482 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 408 ; 3.559 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1YD7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031397. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17709 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 19.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAS REMARK 200 SOFTWARE USED: SOLVE 2.06, RESOLVE 2.06 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL/NAOH, 0.5M AMMONIUM REMARK 280 SULFATE, PH 8.9, MODIFIED MICROBATCH, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -Y,-X,-Z+1/3 REMARK 290 5555 -X+Y,Y,-Z+2/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.05600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.02800 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 43.02800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.05600 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN. THE BIOLOGICAL UNIT IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 ASN A 2 REMARK 465 LYS A 3 REMARK 465 GLY A 99 REMARK 465 TYR A 100 REMARK 465 ALA A 101 REMARK 465 VAL A 102 REMARK 465 ARG A 115 REMARK 465 SER A 116 REMARK 465 GLY A 117 REMARK 465 PRO A 118 REMARK 465 SER A 119 REMARK 465 THR A 120 REMARK 465 GLY A 121 REMARK 465 GLN A 122 REMARK 465 PRO A 123 REMARK 465 THR A 124 REMARK 465 LEU A 125 REMARK 465 PRO A 126 REMARK 465 ALA A 127 REMARK 465 GLN A 128 REMARK 465 GLY A 129 REMARK 465 ASP A 130 REMARK 465 ILE A 131 REMARK 465 MSE A 132 REMARK 465 GLN A 133 REMARK 465 ALA A 134 REMARK 465 ILE A 135 REMARK 465 TRP A 136 REMARK 465 GLY A 137 REMARK 465 THR A 138 REMARK 465 HIS A 139 REMARK 465 GLY A 140 REMARK 465 LEU A 203 REMARK 465 PRO A 204 REMARK 465 ARG A 205 REMARK 465 ASN A 206 REMARK 465 GLU A 207 REMARK 465 GLU A 208 REMARK 465 GLU A 209 REMARK 465 ALA A 210 REMARK 465 LYS A 211 REMARK 465 LEU A 212 REMARK 465 PRO A 213 REMARK 465 PHE A 214 REMARK 465 GLY A 215 REMARK 465 ASP A 216 REMARK 465 PRO A 217 REMARK 465 HIS A 218 REMARK 465 GLY A 219 REMARK 465 ASP A 220 REMARK 465 GLY A 221 REMARK 465 VAL A 222 REMARK 465 PRO A 223 REMARK 465 PRO A 224 REMARK 465 MSE A 225 REMARK 465 PRO A 226 REMARK 465 ILE A 227 REMARK 465 PHE A 228 REMARK 465 GLY A 229 REMARK 465 LYS A 230 REMARK 465 GLY A 231 REMARK 465 TYR A 232 REMARK 465 ARG A 233 REMARK 465 THR A 234 REMARK 465 TYR A 235 REMARK 465 VAL A 236 REMARK 465 THR A 237 REMARK 465 GLY A 238 REMARK 465 LEU A 239 REMARK 465 THR A 240 REMARK 465 HIS A 241 REMARK 465 ASP A 242 REMARK 465 GLU A 243 REMARK 465 LYS A 244 REMARK 465 GLY A 245 REMARK 465 ARG A 246 REMARK 465 PRO A 247 REMARK 465 ARG A 248 REMARK 465 THR A 249 REMARK 465 VAL A 250 REMARK 465 ASP A 251 REMARK 465 ARG A 252 REMARK 465 GLU A 253 REMARK 465 VAL A 254 REMARK 465 HIS A 255 REMARK 465 GLU A 256 REMARK 465 ARG A 257 REMARK 465 LEU A 258 REMARK 465 ILE A 259 REMARK 465 LYS A 260 REMARK 465 ARG A 261 REMARK 465 ILE A 262 REMARK 465 VAL A 263 REMARK 465 GLU A 264 REMARK 465 LYS A 265 REMARK 465 ILE A 266 REMARK 465 GLU A 267 REMARK 465 LYS A 268 REMARK 465 ASN A 269 REMARK 465 LYS A 270 REMARK 465 LYS A 271 REMARK 465 ASP A 272 REMARK 465 ILE A 273 REMARK 465 PHE A 274 REMARK 465 THR A 275 REMARK 465 TYR A 276 REMARK 465 GLU A 277 REMARK 465 THR A 278 REMARK 465 TYR A 279 REMARK 465 GLU A 280 REMARK 465 LEU A 281 REMARK 465 GLU A 282 REMARK 465 ASP A 283 REMARK 465 ALA A 284 REMARK 465 GLU A 285 REMARK 465 ILE A 286 REMARK 465 GLY A 287 REMARK 465 VAL A 288 REMARK 465 VAL A 289 REMARK 465 ALA A 290 REMARK 465 THR A 291 REMARK 465 GLY A 292 REMARK 465 ILE A 293 REMARK 465 VAL A 294 REMARK 465 ALA A 295 REMARK 465 ARG A 296 REMARK 465 SER A 297 REMARK 465 ALA A 298 REMARK 465 LEU A 299 REMARK 465 ARG A 300 REMARK 465 ALA A 301 REMARK 465 VAL A 302 REMARK 465 LYS A 303 REMARK 465 MSE A 304 REMARK 465 LEU A 305 REMARK 465 ARG A 306 REMARK 465 GLU A 307 REMARK 465 GLU A 308 REMARK 465 GLY A 309 REMARK 465 ILE A 310 REMARK 465 LYS A 311 REMARK 465 ALA A 312 REMARK 465 GLY A 313 REMARK 465 LEU A 314 REMARK 465 LEU A 315 REMARK 465 LYS A 316 REMARK 465 ILE A 317 REMARK 465 GLU A 318 REMARK 465 THR A 319 REMARK 465 ILE A 320 REMARK 465 TRP A 321 REMARK 465 PRO A 322 REMARK 465 PHE A 323 REMARK 465 ASP A 324 REMARK 465 PHE A 325 REMARK 465 GLU A 326 REMARK 465 LEU A 327 REMARK 465 ILE A 328 REMARK 465 GLU A 329 REMARK 465 ARG A 330 REMARK 465 ILE A 331 REMARK 465 ALA A 332 REMARK 465 GLU A 333 REMARK 465 ARG A 334 REMARK 465 VAL A 335 REMARK 465 ASP A 336 REMARK 465 LYS A 337 REMARK 465 LEU A 338 REMARK 465 TYR A 339 REMARK 465 VAL A 340 REMARK 465 PRO A 341 REMARK 465 GLU A 342 REMARK 465 MSE A 343 REMARK 465 ASN A 344 REMARK 465 LEU A 345 REMARK 465 GLY A 346 REMARK 465 GLN A 347 REMARK 465 LEU A 348 REMARK 465 TYR A 349 REMARK 465 HIS A 350 REMARK 465 LEU A 351 REMARK 465 ILE A 352 REMARK 465 LYS A 353 REMARK 465 GLU A 354 REMARK 465 GLY A 355 REMARK 465 ALA A 356 REMARK 465 ASN A 357 REMARK 465 GLY A 358 REMARK 465 LYS A 359 REMARK 465 ALA A 360 REMARK 465 GLU A 361 REMARK 465 VAL A 362 REMARK 465 LYS A 363 REMARK 465 LEU A 364 REMARK 465 ILE A 365 REMARK 465 SER A 366 REMARK 465 LYS A 367 REMARK 465 ILE A 368 REMARK 465 GLY A 369 REMARK 465 GLY A 370 REMARK 465 GLU A 371 REMARK 465 VAL A 372 REMARK 465 HIS A 373 REMARK 465 THR A 374 REMARK 465 PRO A 375 REMARK 465 MSE A 376 REMARK 465 GLU A 377 REMARK 465 ILE A 378 REMARK 465 PHE A 379 REMARK 465 GLU A 380 REMARK 465 PHE A 381 REMARK 465 ILE A 382 REMARK 465 ARG A 383 REMARK 465 ARG A 384 REMARK 465 GLU A 385 REMARK 465 PHE A 386 REMARK 465 LYS A 387 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 36 CE2 CZ OH REMARK 470 GLU A 46 CD OE1 OE2 REMARK 470 GLN A 95 CG CD OE1 NE2 REMARK 470 GLN A 114 CG CD OE1 NE2 REMARK 470 ARG A 170 NE CZ NH1 NH2 REMARK 470 LYS A 202 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 104 -52.52 72.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MSE A 103 THR A 104 34.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 388 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 392 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 393 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PFU-1647980-001 RELATED DB: TARGETDB DBREF 1YD7 A 2 387 UNP Q8U046 Q8U046_PYRFU 2 387 SEQADV 1YD7 ALA A -7 UNP Q8U046 CLONING ARTIFACT SEQADV 1YD7 HIS A -6 UNP Q8U046 CLONING ARTIFACT SEQADV 1YD7 HIS A -5 UNP Q8U046 CLONING ARTIFACT SEQADV 1YD7 HIS A -4 UNP Q8U046 CLONING ARTIFACT SEQADV 1YD7 HIS A -3 UNP Q8U046 CLONING ARTIFACT SEQADV 1YD7 HIS A -2 UNP Q8U046 CLONING ARTIFACT SEQADV 1YD7 HIS A -1 UNP Q8U046 CLONING ARTIFACT SEQADV 1YD7 GLY A 0 UNP Q8U046 CLONING ARTIFACT SEQADV 1YD7 SER A 1 UNP Q8U046 CLONING ARTIFACT SEQADV 1YD7 MSE A 48 UNP Q8U046 MET 48 MODIFIED RESIDUE SEQADV 1YD7 MSE A 52 UNP Q8U046 MET 52 MODIFIED RESIDUE SEQADV 1YD7 MSE A 62 UNP Q8U046 MET 62 MODIFIED RESIDUE SEQADV 1YD7 MSE A 83 UNP Q8U046 MET 83 MODIFIED RESIDUE SEQADV 1YD7 MSE A 94 UNP Q8U046 MET 94 MODIFIED RESIDUE SEQADV 1YD7 MSE A 103 UNP Q8U046 MET 103 MODIFIED RESIDUE SEQADV 1YD7 MSE A 132 UNP Q8U046 MET 132 MODIFIED RESIDUE SEQADV 1YD7 MSE A 184 UNP Q8U046 MET 184 MODIFIED RESIDUE SEQADV 1YD7 MSE A 225 UNP Q8U046 MET 225 MODIFIED RESIDUE SEQADV 1YD7 MSE A 304 UNP Q8U046 MET 304 MODIFIED RESIDUE SEQADV 1YD7 MSE A 343 UNP Q8U046 MET 343 MODIFIED RESIDUE SEQADV 1YD7 MSE A 376 UNP Q8U046 MET 376 MODIFIED RESIDUE SEQRES 1 A 395 ALA HIS HIS HIS HIS HIS HIS GLY SER ASN LYS ARG PHE SEQRES 2 A 395 PRO PHE PRO VAL GLY GLU PRO ASP PHE ILE GLN GLY ASP SEQRES 3 A 395 GLU ALA ILE ALA ARG ALA ALA ILE LEU ALA GLY CYS ARG SEQRES 4 A 395 PHE TYR ALA GLY TYR PRO ILE THR PRO ALA SER GLU ILE SEQRES 5 A 395 PHE GLU ALA MSE ALA LEU TYR MSE PRO LEU VAL ASP GLY SEQRES 6 A 395 VAL VAL ILE GLN MSE GLU ASP GLU ILE ALA SER ILE ALA SEQRES 7 A 395 ALA ALA ILE GLY ALA SER TRP ALA GLY ALA LYS ALA MSE SEQRES 8 A 395 THR ALA THR SER GLY PRO GLY PHE SER LEU MSE GLN GLU SEQRES 9 A 395 ASN ILE GLY TYR ALA VAL MSE THR GLU THR PRO VAL VAL SEQRES 10 A 395 ILE VAL ASP VAL GLN ARG SER GLY PRO SER THR GLY GLN SEQRES 11 A 395 PRO THR LEU PRO ALA GLN GLY ASP ILE MSE GLN ALA ILE SEQRES 12 A 395 TRP GLY THR HIS GLY ASP HIS SER LEU ILE VAL LEU SER SEQRES 13 A 395 PRO SER THR VAL GLN GLU ALA PHE ASP PHE THR ILE ARG SEQRES 14 A 395 ALA PHE ASN LEU SER GLU LYS TYR ARG THR PRO VAL ILE SEQRES 15 A 395 LEU LEU THR ASP ALA GLU VAL GLY HIS MSE ARG GLU ARG SEQRES 16 A 395 VAL TYR ILE PRO ASN PRO ASP GLU ILE GLU ILE ILE ASN SEQRES 17 A 395 ARG LYS LEU PRO ARG ASN GLU GLU GLU ALA LYS LEU PRO SEQRES 18 A 395 PHE GLY ASP PRO HIS GLY ASP GLY VAL PRO PRO MSE PRO SEQRES 19 A 395 ILE PHE GLY LYS GLY TYR ARG THR TYR VAL THR GLY LEU SEQRES 20 A 395 THR HIS ASP GLU LYS GLY ARG PRO ARG THR VAL ASP ARG SEQRES 21 A 395 GLU VAL HIS GLU ARG LEU ILE LYS ARG ILE VAL GLU LYS SEQRES 22 A 395 ILE GLU LYS ASN LYS LYS ASP ILE PHE THR TYR GLU THR SEQRES 23 A 395 TYR GLU LEU GLU ASP ALA GLU ILE GLY VAL VAL ALA THR SEQRES 24 A 395 GLY ILE VAL ALA ARG SER ALA LEU ARG ALA VAL LYS MSE SEQRES 25 A 395 LEU ARG GLU GLU GLY ILE LYS ALA GLY LEU LEU LYS ILE SEQRES 26 A 395 GLU THR ILE TRP PRO PHE ASP PHE GLU LEU ILE GLU ARG SEQRES 27 A 395 ILE ALA GLU ARG VAL ASP LYS LEU TYR VAL PRO GLU MSE SEQRES 28 A 395 ASN LEU GLY GLN LEU TYR HIS LEU ILE LYS GLU GLY ALA SEQRES 29 A 395 ASN GLY LYS ALA GLU VAL LYS LEU ILE SER LYS ILE GLY SEQRES 30 A 395 GLY GLU VAL HIS THR PRO MSE GLU ILE PHE GLU PHE ILE SEQRES 31 A 395 ARG ARG GLU PHE LYS MODRES 1YD7 MSE A 48 MET SELENOMETHIONINE MODRES 1YD7 MSE A 52 MET SELENOMETHIONINE MODRES 1YD7 MSE A 62 MET SELENOMETHIONINE MODRES 1YD7 MSE A 83 MET SELENOMETHIONINE MODRES 1YD7 MSE A 94 MET SELENOMETHIONINE MODRES 1YD7 MSE A 103 MET SELENOMETHIONINE MODRES 1YD7 MSE A 184 MET SELENOMETHIONINE HET MSE A 48 8 HET MSE A 52 8 HET MSE A 62 8 HET MSE A 83 8 HET MSE A 94 8 HET MSE A 103 8 HET MSE A 184 8 HET UNX A 388 1 HET UNX A 389 1 HET UNX A 390 1 HET UNX A 391 1 HET UNX A 392 1 HET UNX A 393 1 HETNAM MSE SELENOMETHIONINE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 UNX 6(X) FORMUL 8 HOH *25(H2 O) HELIX 1 1 GLY A 17 GLY A 29 1 13 HELIX 2 2 GLU A 43 MSE A 52 1 10 HELIX 3 3 PRO A 53 ASP A 56 5 4 HELIX 4 4 ASP A 64 ALA A 78 1 15 HELIX 5 5 PRO A 89 GLN A 95 1 7 HELIX 6 6 THR A 151 ARG A 170 1 20 HELIX 7 7 ASP A 178 MSE A 184 1 7 HELIX 8 8 ASN A 192 ILE A 196 5 5 SHEET 1 A 2 GLU A 11 GLN A 16 0 SHEET 2 A 2 ARG A 185 ILE A 190 -1 O VAL A 188 N ASP A 13 SHEET 1 B 6 VAL A 58 GLN A 61 0 SHEET 2 B 6 PHE A 32 GLY A 35 1 N TYR A 33 O ILE A 60 SHEET 3 B 6 ALA A 82 SER A 87 1 O MSE A 83 N ALA A 34 SHEET 4 B 6 VAL A 108 VAL A 113 1 O VAL A 113 N THR A 86 SHEET 5 B 6 PRO A 172 THR A 177 1 O THR A 177 N ASP A 112 SHEET 6 B 6 ILE A 145 LEU A 147 1 N LEU A 147 O LEU A 176 LINK C ALA A 47 N MSE A 48 1555 1555 1.34 LINK C MSE A 48 N ALA A 49 1555 1555 1.33 LINK C TYR A 51 N MSE A 52 1555 1555 1.34 LINK C MSE A 52 N PRO A 53 1555 1555 1.36 LINK C GLN A 61 N MSE A 62 1555 1555 1.32 LINK C MSE A 62 N GLU A 63 1555 1555 1.33 LINK C ALA A 82 N MSE A 83 1555 1555 1.33 LINK C MSE A 83 N THR A 84 1555 1555 1.32 LINK C LEU A 93 N MSE A 94 1555 1555 1.33 LINK C MSE A 94 N GLN A 95 1555 1555 1.33 LINK C MSE A 103 N THR A 104 1555 1555 1.34 LINK C HIS A 183 N MSE A 184 1555 1555 1.33 LINK C MSE A 184 N ARG A 185 1555 1555 1.33 CISPEP 1 THR A 39 PRO A 40 0 10.03 SITE 1 AC1 2 LEU A 144 VAL A 146 SITE 1 AC2 5 PHE A 14 GLU A 43 ALA A 47 ARG A 185 SITE 2 AC2 5 UNX A 391 SITE 1 AC3 4 GLN A 16 ASP A 18 GLU A 19 UNX A 391 SITE 1 AC4 4 GLU A 19 ARG A 185 UNX A 389 UNX A 390 SITE 1 AC5 3 SER A 76 TRP A 77 PRO A 107 SITE 1 AC6 5 PRO A 37 ILE A 38 THR A 39 SER A 42 SITE 2 AC6 5 PHE A 45 CRYST1 61.448 61.448 129.084 90.00 90.00 120.00 P 32 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016274 0.009396 0.000000 0.00000 SCALE2 0.000000 0.018792 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007747 0.00000