data_1YD8 # _entry.id 1YD8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YD8 pdb_00001yd8 10.2210/pdb1yd8/pdb RCSB RCSB031398 ? ? WWPDB D_1000031398 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-02-22 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2024-02-14 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YD8 _pdbx_database_status.recvd_initial_deposition_date 2004-12-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Prag, G.' 1 'Lee, S.' 2 'Mattera, R.' 3 'Arighi, C.N.' 4 'Beach, B.M.' 5 'Bonifacino, J.S.' 6 'Hurley, J.H.' 7 # _citation.id primary _citation.title ;Structural mechanism for ubiquitinated-cargo recognition by the Golgi-localized, {gamma}-ear-containing, ADP-ribosylation-factor-binding proteins ; _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 102 _citation.page_first 2334 _citation.page_last 2339 _citation.year 2005 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15701688 _citation.pdbx_database_id_DOI 10.1073/pnas.0500118102 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Prag, G.' 1 ? primary 'Lee, S.' 2 ? primary 'Mattera, R.' 3 ? primary 'Arighi, C.N.' 4 ? primary 'Beach, B.M.' 5 ? primary 'Bonifacino, J.S.' 6 ? primary 'Hurley, J.H.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat UBIQUIN 8576.831 2 ? ? ? ? 2 polymer man 'ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA3' 11215.484 2 ? ? ? ? 3 water nat water 18.015 146 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'GOLGI-LOCALIZED, GAMMA EAR-CONTAINING, ARF-BINDING PROTEIN 3' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG U,V ? 2 'polypeptide(L)' no no ;GAMGIQKVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQAS DNLSRVINSYKTIIEGQV ; ;GAMGIQKVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQAS DNLSRVINSYKTIIEGQV ; G,H ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 ILE n 1 4 PHE n 1 5 VAL n 1 6 LYS n 1 7 THR n 1 8 LEU n 1 9 THR n 1 10 GLY n 1 11 LYS n 1 12 THR n 1 13 ILE n 1 14 THR n 1 15 LEU n 1 16 GLU n 1 17 VAL n 1 18 GLU n 1 19 PRO n 1 20 SER n 1 21 ASP n 1 22 THR n 1 23 ILE n 1 24 GLU n 1 25 ASN n 1 26 VAL n 1 27 LYS n 1 28 ALA n 1 29 LYS n 1 30 ILE n 1 31 GLN n 1 32 ASP n 1 33 LYS n 1 34 GLU n 1 35 GLY n 1 36 ILE n 1 37 PRO n 1 38 PRO n 1 39 ASP n 1 40 GLN n 1 41 GLN n 1 42 ARG n 1 43 LEU n 1 44 ILE n 1 45 PHE n 1 46 ALA n 1 47 GLY n 1 48 LYS n 1 49 GLN n 1 50 LEU n 1 51 GLU n 1 52 ASP n 1 53 GLY n 1 54 ARG n 1 55 THR n 1 56 LEU n 1 57 SER n 1 58 ASP n 1 59 TYR n 1 60 ASN n 1 61 ILE n 1 62 GLN n 1 63 LYS n 1 64 GLU n 1 65 SER n 1 66 THR n 1 67 LEU n 1 68 HIS n 1 69 LEU n 1 70 VAL n 1 71 LEU n 1 72 ARG n 1 73 LEU n 1 74 ARG n 1 75 GLY n 1 76 GLY n 2 1 GLY n 2 2 ALA n 2 3 MET n 2 4 GLY n 2 5 ILE n 2 6 GLN n 2 7 LYS n 2 8 VAL n 2 9 THR n 2 10 LYS n 2 11 ARG n 2 12 LEU n 2 13 HIS n 2 14 THR n 2 15 LEU n 2 16 GLU n 2 17 GLU n 2 18 VAL n 2 19 ASN n 2 20 ASN n 2 21 ASN n 2 22 VAL n 2 23 ARG n 2 24 LEU n 2 25 LEU n 2 26 SER n 2 27 GLU n 2 28 MET n 2 29 LEU n 2 30 LEU n 2 31 HIS n 2 32 TYR n 2 33 SER n 2 34 GLN n 2 35 GLU n 2 36 ASP n 2 37 SER n 2 38 SER n 2 39 ASP n 2 40 GLY n 2 41 ASP n 2 42 ARG n 2 43 GLU n 2 44 LEU n 2 45 MET n 2 46 LYS n 2 47 GLU n 2 48 LEU n 2 49 PHE n 2 50 ASP n 2 51 GLN n 2 52 CYS n 2 53 GLU n 2 54 ASN n 2 55 LYS n 2 56 ARG n 2 57 ARG n 2 58 THR n 2 59 LEU n 2 60 PHE n 2 61 LYS n 2 62 LEU n 2 63 ALA n 2 64 SER n 2 65 GLU n 2 66 THR n 2 67 GLU n 2 68 ASP n 2 69 ASN n 2 70 ASP n 2 71 ASN n 2 72 SER n 2 73 LEU n 2 74 GLY n 2 75 ASP n 2 76 ILE n 2 77 LEU n 2 78 GLN n 2 79 ALA n 2 80 SER n 2 81 ASP n 2 82 ASN n 2 83 LEU n 2 84 SER n 2 85 ARG n 2 86 VAL n 2 87 ILE n 2 88 ASN n 2 89 SER n 2 90 TYR n 2 91 LYS n 2 92 THR n 2 93 ILE n 2 94 ILE n 2 95 GLU n 2 96 GLY n 2 97 GLN n 2 98 VAL n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'GGA3, KIAA0154' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) ROSETTA' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET-PARALLEL.3_HIS6_GAT _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name cattle _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus Bos _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue 'RED BLOOD CELLS' _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET U . n A 1 2 GLN 2 2 2 GLN GLN U . n A 1 3 ILE 3 3 3 ILE ILE U . n A 1 4 PHE 4 4 4 PHE PHE U . n A 1 5 VAL 5 5 5 VAL VAL U . n A 1 6 LYS 6 6 6 LYS LYS U . n A 1 7 THR 7 7 7 THR THR U . n A 1 8 LEU 8 8 8 LEU LEU U . n A 1 9 THR 9 9 9 THR THR U . n A 1 10 GLY 10 10 10 GLY GLY U . n A 1 11 LYS 11 11 11 LYS LYS U . n A 1 12 THR 12 12 12 THR THR U . n A 1 13 ILE 13 13 13 ILE ILE U . n A 1 14 THR 14 14 14 THR THR U . n A 1 15 LEU 15 15 15 LEU LEU U . n A 1 16 GLU 16 16 16 GLU GLU U . n A 1 17 VAL 17 17 17 VAL VAL U . n A 1 18 GLU 18 18 18 GLU GLU U . n A 1 19 PRO 19 19 19 PRO PRO U . n A 1 20 SER 20 20 20 SER SER U . n A 1 21 ASP 21 21 21 ASP ASP U . n A 1 22 THR 22 22 22 THR THR U . n A 1 23 ILE 23 23 23 ILE ILE U . n A 1 24 GLU 24 24 24 GLU GLU U . n A 1 25 ASN 25 25 25 ASN ASN U . n A 1 26 VAL 26 26 26 VAL VAL U . n A 1 27 LYS 27 27 27 LYS LYS U . n A 1 28 ALA 28 28 28 ALA SER U . n A 1 29 LYS 29 29 29 LYS LYS U . n A 1 30 ILE 30 30 30 ILE ILE U . n A 1 31 GLN 31 31 31 GLN GLN U . n A 1 32 ASP 32 32 32 ASP ASP U . n A 1 33 LYS 33 33 33 LYS LYS U . n A 1 34 GLU 34 34 34 GLU GLU U . n A 1 35 GLY 35 35 35 GLY GLY U . n A 1 36 ILE 36 36 36 ILE ILE U . n A 1 37 PRO 37 37 37 PRO PRO U . n A 1 38 PRO 38 38 38 PRO PRO U . n A 1 39 ASP 39 39 39 ASP ASP U . n A 1 40 GLN 40 40 40 GLN GLN U . n A 1 41 GLN 41 41 41 GLN GLN U . n A 1 42 ARG 42 42 42 ARG ARG U . n A 1 43 LEU 43 43 43 LEU LEU U . n A 1 44 ILE 44 44 44 ILE ILE U . n A 1 45 PHE 45 45 45 PHE PHE U . n A 1 46 ALA 46 46 46 ALA ALA U . n A 1 47 GLY 47 47 47 GLY GLY U . n A 1 48 LYS 48 48 48 LYS LYS U . n A 1 49 GLN 49 49 49 GLN GLN U . n A 1 50 LEU 50 50 50 LEU LEU U . n A 1 51 GLU 51 51 51 GLU GLU U . n A 1 52 ASP 52 52 52 ASP ASP U . n A 1 53 GLY 53 53 53 GLY GLY U . n A 1 54 ARG 54 54 54 ARG ARG U . n A 1 55 THR 55 55 55 THR THR U . n A 1 56 LEU 56 56 56 LEU LEU U . n A 1 57 SER 57 57 57 SER SER U . n A 1 58 ASP 58 58 58 ASP ASP U . n A 1 59 TYR 59 59 59 TYR TYR U . n A 1 60 ASN 60 60 60 ASN ASN U . n A 1 61 ILE 61 61 61 ILE ILE U . n A 1 62 GLN 62 62 62 GLN GLN U . n A 1 63 LYS 63 63 63 LYS LYS U . n A 1 64 GLU 64 64 64 GLU GLU U . n A 1 65 SER 65 65 65 SER SER U . n A 1 66 THR 66 66 66 THR THR U . n A 1 67 LEU 67 67 67 LEU LEU U . n A 1 68 HIS 68 68 68 HIS HIS U . n A 1 69 LEU 69 69 69 LEU LEU U . n A 1 70 VAL 70 70 70 VAL VAL U . n A 1 71 LEU 71 71 71 LEU LEU U . n A 1 72 ARG 72 72 72 ARG ARG U . n A 1 73 LEU 73 73 73 LEU LEU U . n A 1 74 ARG 74 74 ? ? ? U . n A 1 75 GLY 75 75 ? ? ? U . n A 1 76 GLY 76 76 ? ? ? U . n B 2 1 GLY 1 -4 ? ? ? G . n B 2 2 ALA 2 -3 ? ? ? G . n B 2 3 MET 3 -2 ? ? ? G . n B 2 4 GLY 4 -1 -1 GLY GLY G . n B 2 5 ILE 5 208 208 ILE ILE G . n B 2 6 GLN 6 209 209 GLN GLN G . n B 2 7 LYS 7 210 210 LYS LYS G . n B 2 8 VAL 8 211 211 VAL VAL G . n B 2 9 THR 9 212 212 THR THR G . n B 2 10 LYS 10 213 213 LYS LYS G . n B 2 11 ARG 11 214 214 ARG ARG G . n B 2 12 LEU 12 215 215 LEU LEU G . n B 2 13 HIS 13 216 216 HIS HIS G . n B 2 14 THR 14 217 217 THR THR G . n B 2 15 LEU 15 218 218 LEU LEU G . n B 2 16 GLU 16 219 219 GLU GLU G . n B 2 17 GLU 17 220 220 GLU GLU G . n B 2 18 VAL 18 221 221 VAL VAL G . n B 2 19 ASN 19 222 222 ASN ASN G . n B 2 20 ASN 20 223 223 ASN ASN G . n B 2 21 ASN 21 224 224 ASN ASN G . n B 2 22 VAL 22 225 225 VAL VAL G . n B 2 23 ARG 23 226 226 ARG ARG G . n B 2 24 LEU 24 227 227 LEU LEU G . n B 2 25 LEU 25 228 228 LEU LEU G . n B 2 26 SER 26 229 229 SER SER G . n B 2 27 GLU 27 230 230 GLU GLU G . n B 2 28 MET 28 231 231 MET MET G . n B 2 29 LEU 29 232 232 LEU LEU G . n B 2 30 LEU 30 233 233 LEU LEU G . n B 2 31 HIS 31 234 234 HIS HIS G . n B 2 32 TYR 32 235 235 TYR TYR G . n B 2 33 SER 33 236 236 SER SER G . n B 2 34 GLN 34 237 237 GLN GLN G . n B 2 35 GLU 35 238 238 GLU GLU G . n B 2 36 ASP 36 239 239 ASP ASP G . n B 2 37 SER 37 240 240 SER SER G . n B 2 38 SER 38 241 241 SER SER G . n B 2 39 ASP 39 242 242 ASP ASP G . n B 2 40 GLY 40 243 243 GLY GLY G . n B 2 41 ASP 41 244 244 ASP ASP G . n B 2 42 ARG 42 245 245 ARG ARG G . n B 2 43 GLU 43 246 246 GLU GLU G . n B 2 44 LEU 44 247 247 LEU LEU G . n B 2 45 MET 45 248 248 MET MET G . n B 2 46 LYS 46 249 249 LYS LYS G . n B 2 47 GLU 47 250 250 GLU GLU G . n B 2 48 LEU 48 251 251 LEU LEU G . n B 2 49 PHE 49 252 252 PHE PHE G . n B 2 50 ASP 50 253 253 ASP ASP G . n B 2 51 GLN 51 254 254 GLN GLN G . n B 2 52 CYS 52 255 255 CYS CYS G . n B 2 53 GLU 53 256 256 GLU GLU G . n B 2 54 ASN 54 257 257 ASN ASN G . n B 2 55 LYS 55 258 258 LYS LYS G . n B 2 56 ARG 56 259 259 ARG ARG G . n B 2 57 ARG 57 260 260 ARG ARG G . n B 2 58 THR 58 261 261 THR THR G . n B 2 59 LEU 59 262 262 LEU LEU G . n B 2 60 PHE 60 263 263 PHE PHE G . n B 2 61 LYS 61 264 264 LYS LYS G . n B 2 62 LEU 62 265 265 LEU LEU G . n B 2 63 ALA 63 266 266 ALA ALA G . n B 2 64 SER 64 267 267 SER SER G . n B 2 65 GLU 65 268 268 GLU GLU G . n B 2 66 THR 66 269 269 THR THR G . n B 2 67 GLU 67 270 270 GLU GLU G . n B 2 68 ASP 68 271 271 ASP ASP G . n B 2 69 ASN 69 272 272 ASN ASN G . n B 2 70 ASP 70 273 273 ASP ASP G . n B 2 71 ASN 71 274 274 ASN ASN G . n B 2 72 SER 72 275 275 SER SER G . n B 2 73 LEU 73 276 276 LEU LEU G . n B 2 74 GLY 74 277 277 GLY GLY G . n B 2 75 ASP 75 278 278 ASP ASP G . n B 2 76 ILE 76 279 279 ILE ILE G . n B 2 77 LEU 77 280 280 LEU LEU G . n B 2 78 GLN 78 281 281 GLN GLN G . n B 2 79 ALA 79 282 282 ALA ALA G . n B 2 80 SER 80 283 283 SER SER G . n B 2 81 ASP 81 284 284 ASP ASP G . n B 2 82 ASN 82 285 285 ASN ASN G . n B 2 83 LEU 83 286 286 LEU LEU G . n B 2 84 SER 84 287 287 SER SER G . n B 2 85 ARG 85 288 288 ARG ARG G . n B 2 86 VAL 86 289 289 VAL VAL G . n B 2 87 ILE 87 290 290 ILE ILE G . n B 2 88 ASN 88 291 291 ASN ASN G . n B 2 89 SER 89 292 292 SER SER G . n B 2 90 TYR 90 293 293 TYR TYR G . n B 2 91 LYS 91 294 294 LYS LYS G . n B 2 92 THR 92 295 295 THR THR G . n B 2 93 ILE 93 296 296 ILE ILE G . n B 2 94 ILE 94 297 297 ILE ILE G . n B 2 95 GLU 95 298 298 GLU GLU G . n B 2 96 GLY 96 299 299 GLY GLY G . n B 2 97 GLN 97 300 ? ? ? G . n B 2 98 VAL 98 301 ? ? ? G . n C 1 1 MET 1 1 1 MET MET V . n C 1 2 GLN 2 2 2 GLN GLN V . n C 1 3 ILE 3 3 3 ILE ILE V . n C 1 4 PHE 4 4 4 PHE PHE V . n C 1 5 VAL 5 5 5 VAL VAL V . n C 1 6 LYS 6 6 6 LYS LYS V . n C 1 7 THR 7 7 7 THR THR V . n C 1 8 LEU 8 8 8 LEU LEU V . n C 1 9 THR 9 9 9 THR THR V . n C 1 10 GLY 10 10 10 GLY GLY V . n C 1 11 LYS 11 11 11 LYS LYS V . n C 1 12 THR 12 12 12 THR THR V . n C 1 13 ILE 13 13 13 ILE ILE V . n C 1 14 THR 14 14 14 THR THR V . n C 1 15 LEU 15 15 15 LEU LEU V . n C 1 16 GLU 16 16 16 GLU GLU V . n C 1 17 VAL 17 17 17 VAL VAL V . n C 1 18 GLU 18 18 18 GLU GLU V . n C 1 19 PRO 19 19 19 PRO PRO V . n C 1 20 SER 20 20 20 SER SER V . n C 1 21 ASP 21 21 21 ASP ASP V . n C 1 22 THR 22 22 22 THR THR V . n C 1 23 ILE 23 23 23 ILE ILE V . n C 1 24 GLU 24 24 24 GLU GLU V . n C 1 25 ASN 25 25 25 ASN ASN V . n C 1 26 VAL 26 26 26 VAL VAL V . n C 1 27 LYS 27 27 27 LYS LYS V . n C 1 28 ALA 28 28 28 ALA SER V . n C 1 29 LYS 29 29 29 LYS LYS V . n C 1 30 ILE 30 30 30 ILE ILE V . n C 1 31 GLN 31 31 31 GLN GLN V . n C 1 32 ASP 32 32 32 ASP ASP V . n C 1 33 LYS 33 33 33 LYS LYS V . n C 1 34 GLU 34 34 34 GLU GLU V . n C 1 35 GLY 35 35 35 GLY GLY V . n C 1 36 ILE 36 36 36 ILE ILE V . n C 1 37 PRO 37 37 37 PRO PRO V . n C 1 38 PRO 38 38 38 PRO PRO V . n C 1 39 ASP 39 39 39 ASP ASP V . n C 1 40 GLN 40 40 40 GLN GLN V . n C 1 41 GLN 41 41 41 GLN GLN V . n C 1 42 ARG 42 42 42 ARG ARG V . n C 1 43 LEU 43 43 43 LEU LEU V . n C 1 44 ILE 44 44 44 ILE ILE V . n C 1 45 PHE 45 45 45 PHE PHE V . n C 1 46 ALA 46 46 46 ALA ALA V . n C 1 47 GLY 47 47 47 GLY GLY V . n C 1 48 LYS 48 48 48 LYS LYS V . n C 1 49 GLN 49 49 49 GLN GLN V . n C 1 50 LEU 50 50 50 LEU LEU V . n C 1 51 GLU 51 51 51 GLU GLU V . n C 1 52 ASP 52 52 52 ASP ASP V . n C 1 53 GLY 53 53 53 GLY GLY V . n C 1 54 ARG 54 54 54 ARG ARG V . n C 1 55 THR 55 55 55 THR THR V . n C 1 56 LEU 56 56 56 LEU LEU V . n C 1 57 SER 57 57 57 SER SER V . n C 1 58 ASP 58 58 58 ASP ASP V . n C 1 59 TYR 59 59 59 TYR TYR V . n C 1 60 ASN 60 60 60 ASN ASN V . n C 1 61 ILE 61 61 61 ILE ILE V . n C 1 62 GLN 62 62 62 GLN GLN V . n C 1 63 LYS 63 63 63 LYS LYS V . n C 1 64 GLU 64 64 64 GLU GLU V . n C 1 65 SER 65 65 65 SER SER V . n C 1 66 THR 66 66 66 THR THR V . n C 1 67 LEU 67 67 67 LEU LEU V . n C 1 68 HIS 68 68 68 HIS HIS V . n C 1 69 LEU 69 69 69 LEU LEU V . n C 1 70 VAL 70 70 70 VAL VAL V . n C 1 71 LEU 71 71 71 LEU LEU V . n C 1 72 ARG 72 72 72 ARG ARG V . n C 1 73 LEU 73 73 73 LEU LEU V . n C 1 74 ARG 74 74 ? ? ? V . n C 1 75 GLY 75 75 ? ? ? V . n C 1 76 GLY 76 76 ? ? ? V . n D 2 1 GLY 1 -4 ? ? ? H . n D 2 2 ALA 2 -3 ? ? ? H . n D 2 3 MET 3 -2 ? ? ? H . n D 2 4 GLY 4 -1 -1 GLY GLY H . n D 2 5 ILE 5 208 208 ILE ILE H . n D 2 6 GLN 6 209 209 GLN GLN H . n D 2 7 LYS 7 210 210 LYS LYS H . n D 2 8 VAL 8 211 211 VAL VAL H . n D 2 9 THR 9 212 212 THR THR H . n D 2 10 LYS 10 213 213 LYS LYS H . n D 2 11 ARG 11 214 214 ARG ARG H . n D 2 12 LEU 12 215 215 LEU LEU H . n D 2 13 HIS 13 216 216 HIS HIS H . n D 2 14 THR 14 217 217 THR THR H . n D 2 15 LEU 15 218 218 LEU LEU H . n D 2 16 GLU 16 219 219 GLU GLU H . n D 2 17 GLU 17 220 220 GLU GLU H . n D 2 18 VAL 18 221 221 VAL VAL H . n D 2 19 ASN 19 222 222 ASN ASN H . n D 2 20 ASN 20 223 223 ASN ASN H . n D 2 21 ASN 21 224 224 ASN ASN H . n D 2 22 VAL 22 225 225 VAL VAL H . n D 2 23 ARG 23 226 226 ARG ARG H . n D 2 24 LEU 24 227 227 LEU LEU H . n D 2 25 LEU 25 228 228 LEU LEU H . n D 2 26 SER 26 229 229 SER SER H . n D 2 27 GLU 27 230 230 GLU GLU H . n D 2 28 MET 28 231 231 MET MET H . n D 2 29 LEU 29 232 232 LEU LEU H . n D 2 30 LEU 30 233 233 LEU LEU H . n D 2 31 HIS 31 234 234 HIS HIS H . n D 2 32 TYR 32 235 235 TYR TYR H . n D 2 33 SER 33 236 236 SER SER H . n D 2 34 GLN 34 237 237 GLN GLN H . n D 2 35 GLU 35 238 238 GLU GLU H . n D 2 36 ASP 36 239 239 ASP ASP H . n D 2 37 SER 37 240 240 SER SER H . n D 2 38 SER 38 241 241 SER SER H . n D 2 39 ASP 39 242 242 ASP ASP H . n D 2 40 GLY 40 243 243 GLY GLY H . n D 2 41 ASP 41 244 244 ASP ASP H . n D 2 42 ARG 42 245 245 ARG ARG H . n D 2 43 GLU 43 246 246 GLU GLU H . n D 2 44 LEU 44 247 247 LEU LEU H . n D 2 45 MET 45 248 248 MET MET H . n D 2 46 LYS 46 249 249 LYS LYS H . n D 2 47 GLU 47 250 250 GLU GLU H . n D 2 48 LEU 48 251 251 LEU LEU H . n D 2 49 PHE 49 252 252 PHE PHE H . n D 2 50 ASP 50 253 253 ASP ASP H . n D 2 51 GLN 51 254 254 GLN GLN H . n D 2 52 CYS 52 255 255 CYS CYS H . n D 2 53 GLU 53 256 256 GLU GLU H . n D 2 54 ASN 54 257 257 ASN ASN H . n D 2 55 LYS 55 258 258 LYS LYS H . n D 2 56 ARG 56 259 259 ARG ARG H . n D 2 57 ARG 57 260 260 ARG ARG H . n D 2 58 THR 58 261 261 THR THR H . n D 2 59 LEU 59 262 262 LEU LEU H . n D 2 60 PHE 60 263 263 PHE PHE H . n D 2 61 LYS 61 264 264 LYS LYS H . n D 2 62 LEU 62 265 265 LEU LEU H . n D 2 63 ALA 63 266 266 ALA ALA H . n D 2 64 SER 64 267 267 SER SER H . n D 2 65 GLU 65 268 268 GLU GLU H . n D 2 66 THR 66 269 269 THR THR H . n D 2 67 GLU 67 270 270 GLU GLU H . n D 2 68 ASP 68 271 271 ASP ASP H . n D 2 69 ASN 69 272 272 ASN ASN H . n D 2 70 ASP 70 273 273 ASP ASP H . n D 2 71 ASN 71 274 274 ASN ASN H . n D 2 72 SER 72 275 275 SER SER H . n D 2 73 LEU 73 276 276 LEU LEU H . n D 2 74 GLY 74 277 277 GLY GLY H . n D 2 75 ASP 75 278 278 ASP ASP H . n D 2 76 ILE 76 279 279 ILE ILE H . n D 2 77 LEU 77 280 280 LEU LEU H . n D 2 78 GLN 78 281 281 GLN GLN H . n D 2 79 ALA 79 282 282 ALA ALA H . n D 2 80 SER 80 283 283 SER SER H . n D 2 81 ASP 81 284 284 ASP ASP H . n D 2 82 ASN 82 285 285 ASN ASN H . n D 2 83 LEU 83 286 286 LEU LEU H . n D 2 84 SER 84 287 287 SER SER H . n D 2 85 ARG 85 288 288 ARG ARG H . n D 2 86 VAL 86 289 289 VAL VAL H . n D 2 87 ILE 87 290 290 ILE ILE H . n D 2 88 ASN 88 291 291 ASN ASN H . n D 2 89 SER 89 292 292 SER SER H . n D 2 90 TYR 90 293 293 TYR TYR H . n D 2 91 LYS 91 294 294 LYS LYS H . n D 2 92 THR 92 295 295 THR THR H . n D 2 93 ILE 93 296 296 ILE ILE H . n D 2 94 ILE 94 297 297 ILE ILE H . n D 2 95 GLU 95 298 298 GLU GLU H . n D 2 96 GLY 96 299 299 GLY GLY H . n D 2 97 GLN 97 300 ? ? ? H . n D 2 98 VAL 98 301 ? ? ? H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 77 5 HOH HOH U . E 3 HOH 2 78 10 HOH HOH U . E 3 HOH 3 79 12 HOH HOH U . E 3 HOH 4 80 22 HOH HOH U . E 3 HOH 5 81 29 HOH HOH U . E 3 HOH 6 82 31 HOH HOH U . E 3 HOH 7 83 41 HOH HOH U . E 3 HOH 8 84 42 HOH HOH U . E 3 HOH 9 85 45 HOH HOH U . E 3 HOH 10 86 48 HOH HOH U . E 3 HOH 11 87 50 HOH HOH U . E 3 HOH 12 88 51 HOH HOH U . E 3 HOH 13 89 62 HOH HOH U . E 3 HOH 14 90 67 HOH HOH U . E 3 HOH 15 91 69 HOH HOH U . E 3 HOH 16 92 77 HOH HOH U . E 3 HOH 17 93 79 HOH HOH U . E 3 HOH 18 94 81 HOH HOH U . E 3 HOH 19 95 88 HOH HOH U . E 3 HOH 20 96 91 HOH HOH U . E 3 HOH 21 97 92 HOH HOH U . E 3 HOH 22 98 93 HOH HOH U . E 3 HOH 23 99 96 HOH HOH U . E 3 HOH 24 100 98 HOH HOH U . E 3 HOH 25 101 100 HOH HOH U . E 3 HOH 26 102 111 HOH HOH U . E 3 HOH 27 103 114 HOH HOH U . E 3 HOH 28 104 116 HOH HOH U . E 3 HOH 29 105 134 HOH HOH U . E 3 HOH 30 106 135 HOH HOH U . E 3 HOH 31 107 142 HOH HOH U . F 3 HOH 1 6 6 HOH HOH G . F 3 HOH 2 14 14 HOH HOH G . F 3 HOH 3 15 15 HOH HOH G . F 3 HOH 4 25 25 HOH HOH G . F 3 HOH 5 27 27 HOH HOH G . F 3 HOH 6 34 34 HOH HOH G . F 3 HOH 7 35 35 HOH HOH G . F 3 HOH 8 40 40 HOH HOH G . F 3 HOH 9 44 44 HOH HOH G . F 3 HOH 10 46 46 HOH HOH G . F 3 HOH 11 49 49 HOH HOH G . F 3 HOH 12 52 52 HOH HOH G . F 3 HOH 13 54 54 HOH HOH G . F 3 HOH 14 58 58 HOH HOH G . F 3 HOH 15 64 64 HOH HOH G . F 3 HOH 16 75 75 HOH HOH G . F 3 HOH 17 83 83 HOH HOH G . F 3 HOH 18 85 85 HOH HOH G . F 3 HOH 19 90 90 HOH HOH G . F 3 HOH 20 97 97 HOH HOH G . F 3 HOH 21 101 101 HOH HOH G . F 3 HOH 22 103 103 HOH HOH G . F 3 HOH 23 112 112 HOH HOH G . F 3 HOH 24 117 117 HOH HOH G . F 3 HOH 25 121 121 HOH HOH G . F 3 HOH 26 122 122 HOH HOH G . F 3 HOH 27 123 123 HOH HOH G . F 3 HOH 28 126 126 HOH HOH G . F 3 HOH 29 128 128 HOH HOH G . F 3 HOH 30 137 137 HOH HOH G . F 3 HOH 31 138 138 HOH HOH G . F 3 HOH 32 139 139 HOH HOH G . F 3 HOH 33 140 140 HOH HOH G . F 3 HOH 34 143 143 HOH HOH G . F 3 HOH 35 144 144 HOH HOH G . F 3 HOH 36 145 145 HOH HOH G . F 3 HOH 37 146 146 HOH HOH G . G 3 HOH 1 77 8 HOH HOH V . G 3 HOH 2 78 9 HOH HOH V . G 3 HOH 3 79 13 HOH HOH V . G 3 HOH 4 80 16 HOH HOH V . G 3 HOH 5 81 18 HOH HOH V . G 3 HOH 6 82 19 HOH HOH V . G 3 HOH 7 83 21 HOH HOH V . G 3 HOH 8 84 24 HOH HOH V . G 3 HOH 9 85 30 HOH HOH V . G 3 HOH 10 86 33 HOH HOH V . G 3 HOH 11 87 36 HOH HOH V . G 3 HOH 12 88 37 HOH HOH V . G 3 HOH 13 89 38 HOH HOH V . G 3 HOH 14 90 39 HOH HOH V . G 3 HOH 15 91 57 HOH HOH V . G 3 HOH 16 92 68 HOH HOH V . G 3 HOH 17 93 70 HOH HOH V . G 3 HOH 18 94 86 HOH HOH V . G 3 HOH 19 95 87 HOH HOH V . G 3 HOH 20 96 95 HOH HOH V . G 3 HOH 21 97 102 HOH HOH V . G 3 HOH 22 98 104 HOH HOH V . G 3 HOH 23 99 105 HOH HOH V . G 3 HOH 24 100 106 HOH HOH V . G 3 HOH 25 101 109 HOH HOH V . G 3 HOH 26 102 115 HOH HOH V . G 3 HOH 27 103 119 HOH HOH V . G 3 HOH 28 104 125 HOH HOH V . G 3 HOH 29 105 127 HOH HOH V . G 3 HOH 30 106 129 HOH HOH V . G 3 HOH 31 107 130 HOH HOH V . G 3 HOH 32 108 131 HOH HOH V . G 3 HOH 33 109 136 HOH HOH V . H 3 HOH 1 1 1 HOH HOH H . H 3 HOH 2 2 2 HOH HOH H . H 3 HOH 3 3 3 HOH HOH H . H 3 HOH 4 4 4 HOH HOH H . H 3 HOH 5 7 7 HOH HOH H . H 3 HOH 6 11 11 HOH HOH H . H 3 HOH 7 17 17 HOH HOH H . H 3 HOH 8 20 20 HOH HOH H . H 3 HOH 9 23 23 HOH HOH H . H 3 HOH 10 26 26 HOH HOH H . H 3 HOH 11 28 28 HOH HOH H . H 3 HOH 12 32 32 HOH HOH H . H 3 HOH 13 43 43 HOH HOH H . H 3 HOH 14 47 47 HOH HOH H . H 3 HOH 15 53 53 HOH HOH H . H 3 HOH 16 55 55 HOH HOH H . H 3 HOH 17 56 56 HOH HOH H . H 3 HOH 18 59 59 HOH HOH H . H 3 HOH 19 60 60 HOH HOH H . H 3 HOH 20 61 61 HOH HOH H . H 3 HOH 21 63 63 HOH HOH H . H 3 HOH 22 65 65 HOH HOH H . H 3 HOH 23 66 66 HOH HOH H . H 3 HOH 24 71 71 HOH HOH H . H 3 HOH 25 72 72 HOH HOH H . H 3 HOH 26 73 73 HOH HOH H . H 3 HOH 27 74 74 HOH HOH H . H 3 HOH 28 76 76 HOH HOH H . H 3 HOH 29 78 78 HOH HOH H . H 3 HOH 30 80 80 HOH HOH H . H 3 HOH 31 82 82 HOH HOH H . H 3 HOH 32 84 84 HOH HOH H . H 3 HOH 33 89 89 HOH HOH H . H 3 HOH 34 94 94 HOH HOH H . H 3 HOH 35 99 99 HOH HOH H . H 3 HOH 36 107 107 HOH HOH H . H 3 HOH 37 108 108 HOH HOH H . H 3 HOH 38 110 110 HOH HOH H . H 3 HOH 39 113 113 HOH HOH H . H 3 HOH 40 118 118 HOH HOH H . H 3 HOH 41 120 120 HOH HOH H . H 3 HOH 42 124 124 HOH HOH H . H 3 HOH 43 132 132 HOH HOH H . H 3 HOH 44 133 133 HOH HOH H . H 3 HOH 45 141 141 HOH HOH H . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SCALEPACK 'data scaling' . ? 1 COMO phasing . ? 2 CNS refinement . ? 3 # _cell.entry_id 1YD8 _cell.length_a 47.886 _cell.length_b 97.293 _cell.length_c 66.459 _cell.angle_alpha 90.00 _cell.angle_beta 90.03 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YD8 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1YD8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.96 _exptl_crystal.density_percent_sol 37.10 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp 95.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2004-07-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1YD8 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 26.85 _reflns.d_resolution_high 2.80 _reflns.number_obs 5999 _reflns.number_all ? _reflns.percent_possible_obs 95.4 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.1 _reflns.B_iso_Wilson_estimate 65.7 _reflns.pdbx_redundancy 2.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.9 _reflns_shell.percent_possible_all 81.1 _reflns_shell.Rmerge_I_obs 0.361 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.6 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1YD8 _refine.ls_number_reflns_obs 5999 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 217089.83 _refine.pdbx_data_cutoff_low_absF 0.0 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.85 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 95.4 _refine.ls_R_factor_obs 0.221 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.221 _refine.ls_R_factor_R_free 0.297 _refine.ls_R_factor_R_free_error 0.012 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.2 _refine.ls_number_reflns_R_free 614 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 46.4 _refine.aniso_B[1][1] 0.44 _refine.aniso_B[2][2] 0.93 _refine.aniso_B[3][3] -1.37 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.273917 _refine.solvent_model_param_bsol 47.855 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'MODIFIED GGA1 GAT DOMAIN MADE WITH MODELER' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1YD8 _refine_analyze.Luzzati_coordinate_error_obs 0.36 _refine_analyze.Luzzati_sigma_a_obs 0.42 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.53 _refine_analyze.Luzzati_sigma_a_free 0.60 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2664 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 146 _refine_hist.number_atoms_total 2810 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 26.85 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.67 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.8 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_R_work 607 _refine_ls_shell.R_factor_R_work 0.338 _refine_ls_shell.percent_reflns_obs 53.9 _refine_ls_shell.R_factor_R_free 0.478 _refine_ls_shell.R_factor_R_free_error 0.057 _refine_ls_shell.percent_reflns_R_free 10.2 _refine_ls_shell.number_reflns_R_free 69 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1YD8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YD8 _struct.title 'COMPLEX OF HUMAN GGA3 GAT DOMAIN AND UBIQUITIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YD8 _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT, CHROMOSOMAL PROTEIN' _struct_keywords.text 'TRAFFICKING, POST TRANSLATIONAL MODIFICATION, MONO-UBIQUITINATION, PROTEIN TRANSPORT;, PROTEIN TRANSPORT, CHROMOSOMAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP UBIQ_BOVIN P62990 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1 ? 2 UNP GGA3_HUMAN Q9NZ52 2 ;IQKVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLS RVINSYKTIIEGQV ; 208 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1YD8 U 1 ? 76 ? P62990 1 ? 76 ? 1 76 2 1 1YD8 V 1 ? 76 ? P62990 1 ? 76 ? 1 76 3 2 1YD8 G 5 ? 98 ? Q9NZ52 208 ? 301 ? 208 301 4 2 1YD8 H 5 ? 98 ? Q9NZ52 208 ? 301 ? 208 301 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 1YD8 GLY G 1 ? UNP Q9NZ52 ? ? 'cloning artifact' -4 1 3 1YD8 ALA G 2 ? UNP Q9NZ52 ? ? 'cloning artifact' -3 2 3 1YD8 MET G 3 ? UNP Q9NZ52 ? ? 'cloning artifact' -2 3 3 1YD8 GLY G 4 ? UNP Q9NZ52 ? ? 'cloning artifact' -1 4 4 1YD8 GLY H 1 ? UNP Q9NZ52 ? ? 'cloning artifact' -4 5 4 1YD8 ALA H 2 ? UNP Q9NZ52 ? ? 'cloning artifact' -3 6 4 1YD8 MET H 3 ? UNP Q9NZ52 ? ? 'cloning artifact' -2 7 4 1YD8 GLY H 4 ? UNP Q9NZ52 ? ? 'cloning artifact' -1 8 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E,H 2 1 B,C,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 22 ? GLY A 35 ? THR U 22 GLY U 35 1 ? 14 HELX_P HELX_P2 2 PRO A 37 ? ASP A 39 ? PRO U 37 ASP U 39 5 ? 3 HELX_P HELX_P3 3 VAL B 8 ? HIS B 31 ? VAL G 211 HIS G 234 1 ? 24 HELX_P HELX_P4 4 SER B 38 ? SER B 64 ? SER G 241 SER G 267 1 ? 27 HELX_P HELX_P5 5 ASN B 71 ? GLY B 96 ? ASN G 274 GLY G 299 1 ? 26 HELX_P HELX_P6 6 THR C 22 ? GLY C 35 ? THR V 22 GLY V 35 1 ? 14 HELX_P HELX_P7 7 PRO C 37 ? ASP C 39 ? PRO V 37 ASP V 39 5 ? 3 HELX_P HELX_P8 8 VAL D 8 ? HIS D 31 ? VAL H 211 HIS H 234 1 ? 24 HELX_P HELX_P9 9 SER D 38 ? SER D 64 ? SER H 241 SER H 267 1 ? 27 HELX_P HELX_P10 10 ASN D 71 ? GLY D 96 ? ASN H 274 GLY H 299 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 12 ? GLU A 16 ? THR U 12 GLU U 16 A 2 GLN A 2 ? THR A 7 ? GLN U 2 THR U 7 A 3 THR A 66 ? LEU A 71 ? THR U 66 LEU U 71 A 4 GLN A 41 ? ILE A 44 ? GLN U 41 ILE U 44 B 1 THR C 12 ? GLU C 16 ? THR V 12 GLU V 16 B 2 GLN C 2 ? THR C 7 ? GLN V 2 THR V 7 B 3 THR C 66 ? LEU C 71 ? THR V 66 LEU V 71 B 4 GLN C 41 ? ILE C 44 ? GLN V 41 ILE V 44 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 13 ? O ILE U 13 N VAL A 5 ? N VAL U 5 A 2 3 N LYS A 6 ? N LYS U 6 O LEU A 69 ? O LEU U 69 A 3 4 O VAL A 70 ? O VAL U 70 N ARG A 42 ? N ARG U 42 B 1 2 O ILE C 13 ? O ILE V 13 N VAL C 5 ? N VAL V 5 B 2 3 N LYS C 6 ? N LYS V 6 O LEU C 69 ? O LEU V 69 B 3 4 O VAL C 70 ? O VAL V 70 N ARG C 42 ? N ARG V 42 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR U 12 ? ? -111.96 66.42 2 1 SER U 20 ? ? -108.24 55.52 3 1 ASP U 39 ? ? -66.10 28.21 4 1 GLN U 40 ? ? -160.00 24.27 5 1 THR U 55 ? ? -120.63 -154.58 6 1 ASN U 60 ? ? 59.42 79.65 7 1 GLN U 62 ? ? -50.49 175.11 8 1 GLU U 64 ? ? 71.04 37.02 9 1 ILE G 208 ? ? -102.13 -72.18 10 1 GLN G 237 ? ? -40.51 -92.65 11 1 SER G 240 ? ? 162.65 156.18 12 1 SER G 267 ? ? -54.40 -5.26 13 1 ASP G 271 ? ? 27.83 51.37 14 1 ASP G 273 ? ? -58.19 -170.95 15 1 ASN G 274 ? ? 23.34 -83.51 16 1 SER G 275 ? ? -11.29 -63.07 17 1 THR V 12 ? ? -112.36 68.20 18 1 SER V 20 ? ? -108.40 56.02 19 1 ASP V 39 ? ? -67.04 27.90 20 1 GLN V 40 ? ? -159.17 25.96 21 1 THR V 55 ? ? -120.48 -155.33 22 1 ASN V 60 ? ? 60.02 78.75 23 1 GLN V 62 ? ? -52.29 173.87 24 1 GLU V 64 ? ? 70.95 37.02 25 1 ILE H 208 ? ? -102.46 -71.58 26 1 GLN H 237 ? ? -41.37 -92.10 27 1 SER H 240 ? ? 162.27 156.64 28 1 SER H 267 ? ? -52.54 -6.38 29 1 ASP H 271 ? ? 27.40 51.32 30 1 ASP H 273 ? ? -58.09 -170.65 31 1 ASN H 274 ? ? 23.03 -83.53 32 1 SER H 275 ? ? -11.02 -63.84 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 U ARG 74 ? A ARG 74 2 1 Y 1 U GLY 75 ? A GLY 75 3 1 Y 1 U GLY 76 ? A GLY 76 4 1 Y 1 G GLY -4 ? B GLY 1 5 1 Y 1 G ALA -3 ? B ALA 2 6 1 Y 1 G MET -2 ? B MET 3 7 1 Y 1 G GLN 300 ? B GLN 97 8 1 Y 1 G VAL 301 ? B VAL 98 9 1 Y 1 V ARG 74 ? C ARG 74 10 1 Y 1 V GLY 75 ? C GLY 75 11 1 Y 1 V GLY 76 ? C GLY 76 12 1 Y 1 H GLY -4 ? D GLY 1 13 1 Y 1 H ALA -3 ? D ALA 2 14 1 Y 1 H MET -2 ? D MET 3 15 1 Y 1 H GLN 300 ? D GLN 97 16 1 Y 1 H VAL 301 ? D VAL 98 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TYR N N N N 321 TYR CA C N S 322 TYR C C N N 323 TYR O O N N 324 TYR CB C N N 325 TYR CG C Y N 326 TYR CD1 C Y N 327 TYR CD2 C Y N 328 TYR CE1 C Y N 329 TYR CE2 C Y N 330 TYR CZ C Y N 331 TYR OH O N N 332 TYR OXT O N N 333 TYR H H N N 334 TYR H2 H N N 335 TYR HA H N N 336 TYR HB2 H N N 337 TYR HB3 H N N 338 TYR HD1 H N N 339 TYR HD2 H N N 340 TYR HE1 H N N 341 TYR HE2 H N N 342 TYR HH H N N 343 TYR HXT H N N 344 VAL N N N N 345 VAL CA C N S 346 VAL C C N N 347 VAL O O N N 348 VAL CB C N N 349 VAL CG1 C N N 350 VAL CG2 C N N 351 VAL OXT O N N 352 VAL H H N N 353 VAL H2 H N N 354 VAL HA H N N 355 VAL HB H N N 356 VAL HG11 H N N 357 VAL HG12 H N N 358 VAL HG13 H N N 359 VAL HG21 H N N 360 VAL HG22 H N N 361 VAL HG23 H N N 362 VAL HXT H N N 363 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TYR N CA sing N N 306 TYR N H sing N N 307 TYR N H2 sing N N 308 TYR CA C sing N N 309 TYR CA CB sing N N 310 TYR CA HA sing N N 311 TYR C O doub N N 312 TYR C OXT sing N N 313 TYR CB CG sing N N 314 TYR CB HB2 sing N N 315 TYR CB HB3 sing N N 316 TYR CG CD1 doub Y N 317 TYR CG CD2 sing Y N 318 TYR CD1 CE1 sing Y N 319 TYR CD1 HD1 sing N N 320 TYR CD2 CE2 doub Y N 321 TYR CD2 HD2 sing N N 322 TYR CE1 CZ doub Y N 323 TYR CE1 HE1 sing N N 324 TYR CE2 CZ sing Y N 325 TYR CE2 HE2 sing N N 326 TYR CZ OH sing N N 327 TYR OH HH sing N N 328 TYR OXT HXT sing N N 329 VAL N CA sing N N 330 VAL N H sing N N 331 VAL N H2 sing N N 332 VAL CA C sing N N 333 VAL CA CB sing N N 334 VAL CA HA sing N N 335 VAL C O doub N N 336 VAL C OXT sing N N 337 VAL CB CG1 sing N N 338 VAL CB CG2 sing N N 339 VAL CB HB sing N N 340 VAL CG1 HG11 sing N N 341 VAL CG1 HG12 sing N N 342 VAL CG1 HG13 sing N N 343 VAL CG2 HG21 sing N N 344 VAL CG2 HG22 sing N N 345 VAL CG2 HG23 sing N N 346 VAL OXT HXT sing N N 347 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Modeller _pdbx_initial_refinement_model.details 'MODIFIED GGA1 GAT DOMAIN MADE WITH MODELER' # _atom_sites.entry_id 1YD8 _atom_sites.fract_transf_matrix[1][1] 0.020883 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000011 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010278 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015047 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_