HEADER OXIDOREDUCTASE 27-DEC-04 1YE3 TITLE HORSE LIVER ALCOHOL DEHYDROGENASE APOENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE E CHAIN; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS; SOURCE 3 ORGANISM_COMMON: HORSE; SOURCE 4 ORGANISM_TAXID: 9796; SOURCE 5 OTHER_DETAILS: LIVER KEYWDS DEHYDROGENASE, ALCOHOL, LIVER, APOENZYME, METHYLPENTANEDIOL, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.V.PLAPP,B.R.SAVARIMUTHU,S.RAMASWAMY REVDAT 4 23-AUG-23 1YE3 1 REMARK LINK REVDAT 3 13-JUL-11 1YE3 1 VERSN REVDAT 2 24-FEB-09 1YE3 1 VERSN REVDAT 1 11-JAN-05 1YE3 0 JRNL AUTH B.V.PLAPP,B.R.SAVARIMUTHU,S.RAMASWAMY JRNL TITL HORSE LIVER ALCOHOL DEHYDROGENASE APOENZYME JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.EKLUND,B.NORDSTROM,E.ZEPPEZAUER,G.SODERLUND,I.OHLSSON, REMARK 1 AUTH 2 T.BOIWE,B.-O.SODERBERG,O.TAPIA,C.-I.BRANDEN,A.AKESON REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF HORSE LIVER ALCOHOL REMARK 1 TITL 2 DEHYDROGENASE AT 2.4 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 102 27 1976 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.EKLUND,J.-P.SAMAMA,L.WALLEN,C.-I.BRANDEN,A.AKESON, REMARK 1 AUTH 2 T.A JONES REMARK 1 TITL STRUCTURE OF A TRICLINIC TERNARY COMPLEX OF HORSE LIVER REMARK 1 TITL 2 ALCOHOL DEHYDROGENASE AT 2.9 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 146 561 1981 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.RAMASWAMY,D.H.PARK,B.V.PLAPP REMARK 1 TITL SUBSTITUTIONS IN THE FLEXIBLE LOOP OF HORSE LIVER ALCOHOL REMARK 1 TITL 2 DEHYDROGENASE HINDER THE CONFORMATIONAL CHANGE AND UNMASK REMARK 1 TITL 3 HYDROGEN TRANSFER REMARK 1 REF BIOCHEMISTRY V. 38 13951 1999 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.K.RUBACH,S.RAMASWAMY,B.V.PLAPP REMARK 1 TITL CONTRIBUTIONS OF VALINE-292 IN THE NICOTINAMIDE BINDING SITE REMARK 1 TITL 2 OF LIVER ALCOHOL DEHYDROGENASE AND DYNAMICS TO CATALYSIS REMARK 1 REF BIOCHEMISTRY V. 40 12686 2001 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 5 REMARK 1 AUTH H.EKLUND,B.V.PLAPP,J.-P.SAMAMA,C.-I.BRANDEN REMARK 1 TITL BINDING OF SUBSTRATE IN A TERNARY COMPLEX OF HORSE LIVER REMARK 1 TITL 2 ALCOHOL DEHYDROGENASE REMARK 1 REF J.BIOL.CHEM. V. 257 14349 1982 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 6 REMARK 1 AUTH S.RAMASWAMY,H.EKLUND,B.V.PLAPP REMARK 1 TITL STRUCTURES OF HORSE LIVER ALCOHOL DEHYDROGENASE COMPLEXED REMARK 1 TITL 2 WITH NAD+ AND SUBSTITUTED BENZYL ALCOHOLS REMARK 1 REF BIOCHEMISTRY V. 33 5230 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 7 REMARK 1 AUTH J.K.RUBACH,B.V.PLAPP REMARK 1 TITL MOBILITY OF FLUOROBENZYL ALCOHOLS BOUND TO LIVER ALCOHOL REMARK 1 TITL 2 DEHYDROGENASES AS DETERMINED BY NMR AND X-RAY REMARK 1 TITL 3 CRYSTALLOGRAPHIC STUDIES REMARK 1 REF BIOCHEMISTRY V. 41 15770 2002 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 8 REMARK 1 AUTH J.K.RUBACH,B.V.PLAPP REMARK 1 TITL AMINO ACID RESIDUES IN THE NICOTINAMIDE BINDING SITE REMARK 1 TITL 2 CONTRIBUTE TO CATALYSIS BY HORSE LIVER ALCOHOL DEHYDROGENASE REMARK 1 REF BIOCHEMISTRY V. 42 2907 2003 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 9 REMARK 1 AUTH H.EKLUND,J.-P.SAMAMA,T.A.JONES REMARK 1 TITL CRYSTALLOGRAPHIC INVESTIGATIONS OF NICOTINAMIDE ADENINE REMARK 1 TITL 2 DINUCLEOTIDE BINDING TO HORSE LIVER ALCOHOL DEHYDROGENASE REMARK 1 REF BIOCHEMISTRY V. 23 5982 1984 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 10 REMARK 1 AUTH E.CEDERGREN-ZEPPEZAUER,J.-P.SAMAMA,H.EKLUND REMARK 1 TITL CRYSTAL STRUCTURE DETERMINATIONS OF COENZYME ANALOGUE AND REMARK 1 TITL 2 SUBSTRATE COMPLEXES OF LIVER ALCOHOL DEHYDROGENASE. BINDING REMARK 1 TITL 3 OF 1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE AND REMARK 1 TITL 4 TRANS-4-(N,N-DIMETHYLAMINO)CINNAMALDEHYDE TO THE ENZYME REMARK 1 REF BIOCHEMISTRY V. 21 4895 1982 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 71.9 REMARK 3 NUMBER OF REFLECTIONS : 35539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1143 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2002 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.1720 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2785 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : 1.46000 REMARK 3 B33 (A**2) : -2.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.200 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.926 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2844 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3846 ; 1.529 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 373 ; 5.908 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;36.304 ;24.330 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 498 ;14.379 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.041 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 448 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2072 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1284 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1971 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 187 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.011 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.153 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.100 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1895 ; 1.493 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2996 ; 2.218 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1043 ; 3.249 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 850 ; 4.532 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2931 ; 1.671 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 2 ;17.858 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2785 ; 8.267 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 POSITIONS FOR RESIDUES A269-A270 WERE NOT WELL-DEFINED BY THE REMARK 3 ELECTRON DENSITY. REMARK 3 SEVERAL RESIDUES, INCLUDING A306, HAVE ALTERNATIVE CONFORMATIONS, REMARK 3 BUT THESE WERE REMARK 3 NOT MODELED. REMARK 4 REMARK 4 1YE3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36732 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 20.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 71.9 REMARK 200 DATA REDUNDANCY : 5.660 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.74 REMARK 200 R MERGE FOR SHELL (I) : 0.21100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 8ADH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS-HCL, 25% METHYLPENTANEDIOL, REMARK 280 PH 8.4, MICRODIALYSIS, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.62500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.62500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.89000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.14500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.89000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.14500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.62500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.89000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.14500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.62500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.89000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.14500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -126.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 90.62500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 67 -3.97 -142.31 REMARK 500 ASN A 109 -8.28 -142.81 REMARK 500 THR A 143 -66.06 -121.26 REMARK 500 SER A 144 72.75 56.80 REMARK 500 CYS A 174 -70.68 -162.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 HIS A 67 NE2 103.5 REMARK 620 3 CYS A 174 SG 129.3 118.9 REMARK 620 4 HOH A 463 O 99.0 101.4 98.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 100 SG 110.8 REMARK 620 3 CYS A 103 SG 115.2 104.2 REMARK 620 4 CYS A 111 SG 104.3 117.5 105.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8ADH RELATED DB: PDB REMARK 900 HORSE LIVER ALCOHOL DEHYDROGENASE APOENZYME AT 2.4 A DBREF 1YE3 A 1 374 UNP P00327 ADHE_HORSE 1 374 SEQRES 1 A 374 SER THR ALA GLY LYS VAL ILE LYS CYS LYS ALA ALA VAL SEQRES 2 A 374 LEU TRP GLU GLU LYS LYS PRO PHE SER ILE GLU GLU VAL SEQRES 3 A 374 GLU VAL ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS SEQRES 4 A 374 MET VAL ALA THR GLY ILE CYS ARG SER ASP ASP HIS VAL SEQRES 5 A 374 VAL SER GLY THR LEU VAL THR PRO LEU PRO VAL ILE ALA SEQRES 6 A 374 GLY HIS GLU ALA ALA GLY ILE VAL GLU SER ILE GLY GLU SEQRES 7 A 374 GLY VAL THR THR VAL ARG PRO GLY ASP LYS VAL ILE PRO SEQRES 8 A 374 LEU PHE THR PRO GLN CYS GLY LYS CYS ARG VAL CYS LYS SEQRES 9 A 374 HIS PRO GLU GLY ASN PHE CYS LEU LYS ASN ASP LEU SER SEQRES 10 A 374 MET PRO ARG GLY THR MET GLN ASP GLY THR SER ARG PHE SEQRES 11 A 374 THR CYS ARG GLY LYS PRO ILE HIS HIS PHE LEU GLY THR SEQRES 12 A 374 SER THR PHE SER GLN TYR THR VAL VAL ASP GLU ILE SER SEQRES 13 A 374 VAL ALA LYS ILE ASP ALA ALA SER PRO LEU GLU LYS VAL SEQRES 14 A 374 CYS LEU ILE GLY CYS GLY PHE SER THR GLY TYR GLY SER SEQRES 15 A 374 ALA VAL LYS VAL ALA LYS VAL THR GLN GLY SER THR CYS SEQRES 16 A 374 ALA VAL PHE GLY LEU GLY GLY VAL GLY LEU SER VAL ILE SEQRES 17 A 374 MET GLY CYS LYS ALA ALA GLY ALA ALA ARG ILE ILE GLY SEQRES 18 A 374 VAL ASP ILE ASN LYS ASP LYS PHE ALA LYS ALA LYS GLU SEQRES 19 A 374 VAL GLY ALA THR GLU CYS VAL ASN PRO GLN ASP TYR LYS SEQRES 20 A 374 LYS PRO ILE GLN GLU VAL LEU THR GLU MET SER ASN GLY SEQRES 21 A 374 GLY VAL ASP PHE SER PHE GLU VAL ILE GLY ARG LEU ASP SEQRES 22 A 374 THR MET VAL THR ALA LEU SER CYS CYS GLN GLU ALA TYR SEQRES 23 A 374 GLY VAL SER VAL ILE VAL GLY VAL PRO PRO ASP SER GLN SEQRES 24 A 374 ASN LEU SER MET ASN PRO MET LEU LEU LEU SER GLY ARG SEQRES 25 A 374 THR TRP LYS GLY ALA ILE PHE GLY GLY PHE LYS SER LYS SEQRES 26 A 374 ASP SER VAL PRO LYS LEU VAL ALA ASP PHE MET ALA LYS SEQRES 27 A 374 LYS PHE ALA LEU ASP PRO LEU ILE THR HIS VAL LEU PRO SEQRES 28 A 374 PHE GLU LYS ILE ASN GLU GLY PHE ASP LEU LEU ARG SER SEQRES 29 A 374 GLY GLU SER ILE ARG THR ILE LEU THR PHE HET ZN A 375 1 HET ZN A 376 1 HET MPD A2001 8 HETNAM ZN ZINC ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 MPD C6 H14 O2 FORMUL 5 HOH *200(H2 O) HELIX 1 1 CYS A 46 SER A 54 1 9 HELIX 2 2 PRO A 165 CYS A 170 1 6 HELIX 3 3 LEU A 171 GLY A 173 5 3 HELIX 4 4 CYS A 174 LYS A 185 1 12 HELIX 5 5 GLY A 201 ALA A 214 1 14 HELIX 6 6 ASN A 225 ASP A 227 5 3 HELIX 7 7 LYS A 228 GLY A 236 1 9 HELIX 8 8 ASN A 242 TYR A 246 5 5 HELIX 9 9 PRO A 249 SER A 258 1 10 HELIX 10 10 ARG A 271 CYS A 282 1 12 HELIX 11 11 PRO A 305 SER A 310 1 6 HELIX 12 12 ILE A 318 PHE A 322 5 5 HELIX 13 13 LYS A 323 ALA A 337 1 15 HELIX 14 14 LEU A 342 ILE A 346 5 5 HELIX 15 15 LYS A 354 SER A 364 1 11 SHEET 1 A 4 ILE A 7 VAL A 13 0 SHEET 2 A 4 SER A 22 VAL A 28 -1 O GLU A 24 N ALA A 11 SHEET 3 A 4 PHE A 130 CYS A 132 -1 O THR A 131 N GLU A 27 SHEET 4 A 4 LYS A 135 ILE A 137 -1 O LYS A 135 N CYS A 132 SHEET 1 B 5 TYR A 149 ASP A 153 0 SHEET 2 B 5 GLU A 35 GLY A 44 -1 N ILE A 38 O THR A 150 SHEET 3 B 5 ALA A 69 ILE A 76 -1 O ILE A 72 N LYS A 39 SHEET 4 B 5 LYS A 88 PRO A 91 -1 O VAL A 89 N GLY A 71 SHEET 5 B 5 VAL A 157 ILE A 160 -1 O ILE A 160 N LYS A 88 SHEET 1 C 4 TYR A 149 ASP A 153 0 SHEET 2 C 4 GLU A 35 GLY A 44 -1 N ILE A 38 O THR A 150 SHEET 3 C 4 THR A 370 THR A 373 -1 O LEU A 372 N THR A 43 SHEET 4 C 4 HIS A 348 PRO A 351 1 N LEU A 350 O ILE A 371 SHEET 1 D 6 GLU A 239 VAL A 241 0 SHEET 2 D 6 ARG A 218 VAL A 222 1 N GLY A 221 O VAL A 241 SHEET 3 D 6 THR A 194 PHE A 198 1 N CYS A 195 O ILE A 220 SHEET 4 D 6 PHE A 264 GLU A 267 1 O PHE A 266 N PHE A 198 SHEET 5 D 6 VAL A 288 ILE A 291 1 O VAL A 290 N SER A 265 SHEET 6 D 6 THR A 313 GLY A 316 1 O LYS A 315 N ILE A 291 LINK SG CYS A 46 ZN ZN A 375 1555 1555 2.42 LINK NE2 HIS A 67 ZN ZN A 375 1555 1555 2.05 LINK SG CYS A 97 ZN ZN A 376 1555 1555 2.30 LINK SG CYS A 100 ZN ZN A 376 1555 1555 2.37 LINK SG CYS A 103 ZN ZN A 376 1555 1555 2.35 LINK SG CYS A 111 ZN ZN A 376 1555 1555 2.33 LINK SG CYS A 174 ZN ZN A 375 1555 1555 2.21 LINK ZN ZN A 375 O HOH A 463 1555 1555 2.11 CISPEP 1 LEU A 61 PRO A 62 0 -0.99 SITE 1 AC1 4 CYS A 46 HIS A 67 CYS A 174 HOH A 463 SITE 1 AC2 4 CYS A 97 CYS A 100 CYS A 103 CYS A 111 SITE 1 AC3 5 LEU A 116 VAL A 294 PRO A 296 MET A 306 SITE 2 AC3 5 HOH A 464 CRYST1 55.780 74.290 181.250 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017928 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005517 0.00000