HEADER IMMUNE SYSTEM 13-AUG-98 1YEJ
TITLE CATALYTIC ANTIBODY COMPLEX
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROTEIN (IG ANTIBODY D2.3 (LIGHT CHAIN));
COMPND 3 CHAIN: L;
COMPND 4 FRAGMENT: ANTIGEN BINDING FRAGMENT;
COMPND 5 MOL_ID: 2;
COMPND 6 MOLECULE: PROTEIN (IG ANTIBODY D2.3 (HEAVY CHAIN));
COMPND 7 CHAIN: H;
COMPND 8 FRAGMENT: ANTIGEN BINDING FRAGMENT
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 STRAIN: BALB/C;
SOURCE 6 CELL: B-LYMPHOCYTE;
SOURCE 7 MOL_ID: 2;
SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 9 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 10 ORGANISM_TAXID: 10090;
SOURCE 11 STRAIN: BALB/C;
SOURCE 12 CELL: B-LYMPHOCYTE
KEYWDS ABZYME, TRANSITION STATE ANALOG, IMMUNE SYSTEM
EXPDTA X-RAY DIFFRACTION
AUTHOR B.GIGANT,M.KNOSSOW
REVDAT 6 30-OCT-24 1YEJ 1 REMARK
REVDAT 5 23-AUG-23 1YEJ 1 REMARK LINK
REVDAT 4 24-FEB-09 1YEJ 1 VERSN
REVDAT 3 01-APR-03 1YEJ 1 JRNL
REVDAT 2 29-DEC-99 1YEJ 4 HEADER COMPND REMARK JRNL
REVDAT 2 2 4 ATOM SOURCE SEQRES
REVDAT 1 13-JAN-99 1YEJ 0
JRNL AUTH B.GIGANT,J.B.CHARBONNIER,Z.ESHHAR,B.S.GREEN,M.KNOSSOW
JRNL TITL CROSSREACTIVITY, EFFICIENCY AND CATALYTIC SPECIFICITY OF AN
JRNL TITL 2 ESTERASE-LIKE ANTIBODY.
JRNL REF J.MOL.BIOL. V. 284 741 1998
JRNL REFN ISSN 0022-2836
JRNL PMID 9826512
JRNL DOI 10.1006/JMBI.1998.2198
REMARK 2
REMARK 2 RESOLUTION. 1.85 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : X-PLOR 3.843
REMARK 3 AUTHORS : BRUNGER
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000
REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL
REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL
REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.9
REMARK 3 NUMBER OF REFLECTIONS : 45666
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING SET) : 0.212
REMARK 3 FREE R VALUE : 0.246
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 2313
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 8
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.80
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5354
REMARK 3 BIN R VALUE (WORKING SET) : 0.3040
REMARK 3 BIN FREE R VALUE : 0.3130
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 282
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3388
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 34
REMARK 3 SOLVENT ATOMS : 160
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.00
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM SIGMAA (A) : 0.24
REMARK 3 LOW RESOLUTION CUTOFF (A) : 7.00
REMARK 3
REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM C-V SIGMAA (A) : NULL
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 2.324
REMARK 3 DIHEDRAL ANGLES (DEGREES) : 28.42
REMARK 3 IMPROPER ANGLES (DEGREES) : 1.362
REMARK 3
REMARK 3 ISOTROPIC THERMAL MODEL : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3
REMARK 3 NCS MODEL : NULL
REMARK 3
REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT
REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL
REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL
REMARK 3
REMARK 3 PARAMETER FILE 1 : NULL
REMARK 3 TOPOLOGY FILE 1 : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 1YEJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB.
REMARK 100 THE DEPOSITION ID IS D_1000008391.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 12-JUL-96
REMARK 200 TEMPERATURE (KELVIN) : 278
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : LURE
REMARK 200 BEAMLINE : DW32
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.98
REMARK 200 MONOCHROMATOR : GRAPHITE
REMARK 200 OPTICS : BENT MIRROR
REMARK 200
REMARK 200 DETECTOR TYPE : IMAGE PLATE
REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO 1.6
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46997
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850
REMARK 200 RESOLUTION RANGE LOW (A) : 10.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9
REMARK 200 DATA REDUNDANCY : 2.200
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.06500
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8
REMARK 200 DATA REDUNDANCY IN SHELL : 2.20
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : 0.40400
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.650
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: AMORE
REMARK 200 STARTING MODEL: 1YEC
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 57.00
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PRECIPITANT: 30% (W/V) PEG 600, 100MM
REMARK 280 CACODYLATE PH7.5, 40MM ZN ACETATE, VAPOR DIFFUSION, HANGING DROP
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+2/3
REMARK 290 6555 -X,-X+Y,-Z+1/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.89133
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.78267
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 105.78267
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.89133
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 5520 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 19210 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -172.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 LEU L 11 CA - CB - CG ANGL. DEV. = 15.9 DEGREES
REMARK 500 VAL H 18 CB - CA - C ANGL. DEV. = -11.8 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 VAL L 51 -46.17 69.41
REMARK 500 ASN L 212 -136.31 -161.59
REMARK 500 SER H 41 57.29 29.96
REMARK 500 GLN H 43 101.33 -55.34
REMARK 500 ILE H 48 -61.98 -91.42
REMARK 500 THR H 82B 67.86 39.93
REMARK 500 VAL H 127 -41.31 -168.42
REMARK 500 THR H 131 15.49 59.15
REMARK 500 THR H 132 -128.31 66.60
REMARK 500 SER H 134 -72.42 76.75
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 TYR L 140 0.07 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN L 603 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS L 49 NE2
REMARK 620 2 HOH L 647 O 103.4
REMARK 620 3 ASP H 100C OD1 105.8 135.9
REMARK 620 N 1 2
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN L 607 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP L 60 OD1
REMARK 620 2 ASP L 60 OD2 52.6
REMARK 620 3 HOH L 658 O 92.7 104.6
REMARK 620 4 HOH L 660 O 103.3 139.6 108.9
REMARK 620 5 HOH L 698 O 158.2 107.4 102.0 87.1
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN L 604 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS L 93 ND1
REMARK 620 2 PNF L 551 O7 84.4
REMARK 620 3 ASP H 181 OD1 108.1 94.6
REMARK 620 N 1 2
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN L 605 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP L 151 OD2
REMARK 620 2 HIS L 189 ND1 114.2
REMARK 620 3 HOH L 642 O 134.8 104.3
REMARK 620 4 HOH L 657 O 101.7 106.6 88.3
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN L 601 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HOH L 657 O
REMARK 620 2 HOH L 680 O 110.1
REMARK 620 3 HOH L 698 O 90.9 83.4
REMARK 620 N 1 2
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN L 602 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HOH L 691 O
REMARK 620 2 HOH L 696 O 90.4
REMARK 620 N 1
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN L 606 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HOH L 642 O
REMARK 620 2 HOH L 658 O 101.8
REMARK 620 3 HOH L 697 O 128.2 125.5
REMARK 620 N 1 2
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 603
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 604
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 605
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 602
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 606
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 607
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PNF L 551
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 THE SEQUENCES OF THE CONSTANT DOMAINS OF THE HEAVY CHAINS.
REMARK 999 (RESIDUES H106 - H223) AND OF THE LIGHT CHAINS
REMARK 999 (RESIDUES L107 - L214) HAVE NOT BEEN DETERMINED FOR THIS
REMARK 999 IMMUNOGLOBULIN. THEY HAVE BEEN ASSIGNED THE CONSENSUS
REMARK 999 SEQUENCE FOR THE CONSTANT DOMAIN OF MOUSE KAPPA LIGHT
REMARK 999 CHAIN AND FOR THE FIRST CONSTANT DOMAIN OF MOUSE GROUP
REMARK 999 2A HEAVY CHAINS. PNF IS PARA-NITROPHENYL PHOSPHONATE
REMARK 999 GLUTARYL CAPROATE
REMARK 999 (NO2-C6H5-O-PO2-(CH2)3-CO-NH-(CH2)5-COOH)
DBREF 1YEJ L 1 214 PDB 1YEJ 1YEJ 1 214
DBREF 1YEJ H 1 223 PDB 1YEJ 1YEJ 1 223
SEQRES 1 L 219 ASP ILE VAL MET THR GLN SER PRO LEU THR LEU SER VAL
SEQRES 2 L 219 THR ILE GLY GLN PRO ALA SER ILE SER CYS LYS SER SER
SEQRES 3 L 219 GLN SER LEU LEU TYR SER ASN GLY LYS THR TYR LEU ASN
SEQRES 4 L 219 TRP LEU LEU GLN ARG PRO GLY GLN SER PRO LYS ARG LEU
SEQRES 5 L 219 ILE HIS LEU VAL SER LYS LEU ASP SER GLY VAL PRO ASP
SEQRES 6 L 219 ARG ILE THR GLY SER GLY SER GLY THR ASP PHE THR LEU
SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA ALA ASP LEU GLY VAL TYR
SEQRES 8 L 219 TYR CYS VAL GLN GLY THR HIS PHE PRO TYR THR PHE GLY
SEQRES 9 L 219 GLY GLY THR LYS LEU GLU ILE LEU ARG ALA ASP ALA ALA
SEQRES 10 L 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU
SEQRES 11 L 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN
SEQRES 12 L 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP
SEQRES 13 L 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR
SEQRES 14 L 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER
SEQRES 15 L 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN
SEQRES 16 L 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER
SEQRES 17 L 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS
SEQRES 1 H 222 GLU MET GLN LEU GLN GLN SER GLY ALA GLU LEU LEU ARG
SEQRES 2 H 222 PRO GLY THR SER VAL LYS LEU SER CYS LYS THR SER GLY
SEQRES 3 H 222 TYR ILE PHE THR SER TYR TRP ILE HIS TRP VAL LYS GLN
SEQRES 4 H 222 ARG SER GLY GLN GLY LEU GLU TRP ILE ALA ARG ILE TYR
SEQRES 5 H 222 PRO GLY THR GLY SER THR TYR TYR ASN GLU LYS PHE LYS
SEQRES 6 H 222 GLY LYS ALA THR LEU THR ALA ASP LYS SER SER SER THR
SEQRES 7 H 222 ALA TYR MET GLN LEU SER THR LEU LYS SER GLU ASP SER
SEQRES 8 H 222 ALA VAL TYR PHE CYS THR ARG TRP GLY PHE ILE PRO VAL
SEQRES 9 H 222 ARG GLU ASP TYR VAL MET ASP TYR TRP GLY GLN GLY THR
SEQRES 10 H 222 LEU VAL THR VAL SER SER ALA LYS THR THR ALA PRO SER
SEQRES 11 H 222 VAL TYR PRO LEU ALA PRO VAL CYS GLY ASP THR THR GLY
SEQRES 12 H 222 SER SER VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE
SEQRES 13 H 222 PRO GLU PRO VAL THR LEU THR TRP ASN SER GLY SER LEU
SEQRES 14 H 222 SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER
SEQRES 15 H 222 ASP LEU TYR THR LEU SER SER SER VAL THR VAL THR SER
SEQRES 16 H 222 SER THR TRP PRO SER GLN SER ILE THR CYS ASN VAL ALA
SEQRES 17 H 222 HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE GLU
SEQRES 18 H 222 PRO
HET ZN L 601 1
HET ZN L 603 1
HET ZN L 604 1
HET ZN L 605 1
HET ZN L 602 1
HET ZN L 606 1
HET ZN L 607 1
HET PNF L 551 27
HETNAM ZN ZINC ION
HETNAM PNF 6-{4-[HYDROXY-(4-NITRO-PHENOXY)-PHOSPHORYL]-
HETNAM 2 PNF BUTYRYLAMINO}-HEXANOIC ACID
FORMUL 3 ZN 7(ZN 2+)
FORMUL 10 PNF C16 H23 N2 O8 P
FORMUL 11 HOH *160(H2 O)
HELIX 1 1 ALA L 80 ASP L 82 5 3
HELIX 2 2 SER L 122 SER L 127 1 6
HELIX 3 3 LYS L 183 ARG L 188 1 6
HELIX 4 4 PHE H 29 SER H 31 5 3
HELIX 5 5 GLU H 61 PHE H 63 5 3
HELIX 6 6 LYS H 73 SER H 75 5 3
HELIX 7 7 SER H 84 ASP H 86 5 3
HELIX 8 8 ASN H 160 GLY H 162 5 3
HELIX 9 9 PRO H 211 SER H 213 5 3
SHEET 1 A 4 MET L 4 SER L 7 0
SHEET 2 A 4 ALA L 19 SER L 25 -1 N LYS L 24 O THR L 5
SHEET 3 A 4 ASP L 70 ILE L 75 -1 N ILE L 75 O ALA L 19
SHEET 4 A 4 ILE L 62 SER L 67 -1 N SER L 67 O ASP L 70
SHEET 1 B 5 THR L 10 THR L 14 0
SHEET 2 B 5 THR L 102 LEU L 107 1 N LYS L 103 O LEU L 11
SHEET 3 B 5 GLY L 84 GLN L 90 -1 N TYR L 86 O THR L 102
SHEET 4 B 5 LEU L 33 GLN L 38 -1 N GLN L 38 O VAL L 85
SHEET 5 B 5 PRO L 44 ILE L 48 -1 N ILE L 48 O TRP L 35
SHEET 1 C 4 THR L 114 PHE L 118 0
SHEET 2 C 4 GLY L 129 ASN L 137 -1 N ASN L 137 O THR L 114
SHEET 3 C 4 MET L 175 THR L 182 -1 N LEU L 181 O ALA L 130
SHEET 4 C 4 VAL L 159 TRP L 163 -1 N SER L 162 O SER L 176
SHEET 1 D 4 SER L 153 ARG L 155 0
SHEET 2 D 4 ILE L 144 ILE L 150 -1 N ILE L 150 O SER L 153
SHEET 3 D 4 SER L 191 HIS L 198 -1 N THR L 197 O ASN L 145
SHEET 4 D 4 ILE L 205 ASN L 210 -1 N PHE L 209 O TYR L 192
SHEET 1 E 4 GLN H 3 GLN H 6 0
SHEET 2 E 4 VAL H 18 SER H 25 -1 N SER H 25 O GLN H 3
SHEET 3 E 4 THR H 77 LEU H 82 -1 N LEU H 82 O VAL H 18
SHEET 4 E 4 ALA H 67 ASP H 72 -1 N ASP H 72 O THR H 77
SHEET 1 F 6 GLU H 10 LEU H 12 0
SHEET 2 F 6 THR H 107 VAL H 111 1 N THR H 110 O GLU H 10
SHEET 3 F 6 ALA H 88 THR H 93 -1 N TYR H 90 O THR H 107
SHEET 4 F 6 TRP H 33 GLN H 39 -1 N GLN H 39 O VAL H 89
SHEET 5 F 6 LEU H 45 TYR H 52 -1 N ILE H 51 O ILE H 34
SHEET 6 F 6 SER H 56 TYR H 59 -1 N TYR H 58 O ARG H 50
SHEET 1 G 4 SER H 120 LEU H 124 0
SHEET 2 G 4 SER H 135 TYR H 145 -1 N LYS H 143 O SER H 120
SHEET 3 G 4 TYR H 183 THR H 192 -1 N VAL H 191 O VAL H 136
SHEET 4 G 4 VAL H 169 THR H 171 -1 N HIS H 170 O SER H 188
SHEET 1 H 3 THR H 151 TRP H 155 0
SHEET 2 H 3 THR H 204 HIS H 210 -1 N ALA H 209 O THR H 151
SHEET 3 H 3 THR H 215 LYS H 220 -1 N LYS H 219 O CYS H 206
SHEET 1 I 2 VAL H 175 GLN H 177 0
SHEET 2 I 2 LEU H 182 THR H 184 -1 N THR H 184 O VAL H 175
SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.03
SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.03
SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.03
SSBOND 4 CYS H 140 CYS H 206 1555 1555 2.03
LINK NE2 HIS L 49 ZN ZN L 603 1555 1555 2.31
LINK OD1 ASP L 60 ZN ZN L 607 4456 1555 2.73
LINK OD2 ASP L 60 ZN ZN L 607 4456 1555 2.00
LINK ND1 HIS L 93 ZN ZN L 604 1555 1555 2.17
LINK OD2 ASP L 151 ZN ZN L 605 1555 1555 1.92
LINK ND1 HIS L 189 ZN ZN L 605 1555 1555 2.34
LINK O7 PNF L 551 ZN ZN L 604 1555 1555 2.25
LINK ZN ZN L 601 O HOH L 657 1555 1655 1.65
LINK ZN ZN L 601 O HOH L 680 1555 4556 1.84
LINK ZN ZN L 601 O HOH L 698 1555 1655 2.21
LINK ZN ZN L 602 O HOH L 691 1555 1555 1.76
LINK ZN ZN L 602 O HOH L 696 1555 1555 1.69
LINK ZN ZN L 603 O HOH L 647 1555 1555 1.92
LINK ZN ZN L 603 OD1 ASP H 100C 1555 1555 2.12
LINK ZN ZN L 604 OD1 ASP H 181 1555 5665 2.07
LINK ZN ZN L 605 O HOH L 642 1555 1555 1.74
LINK ZN ZN L 605 O HOH L 657 1555 1555 2.07
LINK ZN ZN L 606 O HOH L 642 1555 1555 1.72
LINK ZN ZN L 606 O HOH L 658 1555 1555 1.71
LINK ZN ZN L 606 O HOH L 697 1555 1555 1.56
LINK ZN ZN L 607 O HOH L 658 1555 1555 1.93
LINK ZN ZN L 607 O HOH L 660 1555 1555 1.95
LINK ZN ZN L 607 O HOH L 698 1555 1555 1.59
CISPEP 1 SER L 7 PRO L 8 0 0.01
CISPEP 2 PHE L 94 PRO L 95 0 0.08
CISPEP 3 TYR L 140 PRO L 141 0 0.43
CISPEP 4 PHE H 146 PRO H 147 0 -0.43
CISPEP 5 GLU H 148 PRO H 149 0 0.14
CISPEP 6 TRP H 197 PRO H 198 0 -0.71
SITE 1 AC1 5 ZN L 605 ZN L 607 HOH L 657 HOH L 680
SITE 2 AC1 5 HOH L 698
SITE 1 AC2 4 ASP H 100C HIS L 49 LYS L 53 HOH L 647
SITE 1 AC3 5 ASP H 181 HIS L 93 PNF L 551 ZN L 602
SITE 2 AC3 5 HOH L 691
SITE 1 AC4 6 ASP L 151 HIS L 189 ZN L 601 ZN L 606
SITE 2 AC4 6 HOH L 642 HOH L 657
SITE 1 AC5 5 SER H 112 ASP H 181 ZN L 604 HOH L 691
SITE 2 AC5 5 HOH L 696
SITE 1 AC6 5 ZN L 605 ZN L 607 HOH L 642 HOH L 658
SITE 2 AC6 5 HOH L 697
SITE 1 AC7 7 ASP L 60 ZN L 601 ZN L 606 HOH L 658
SITE 2 AC7 7 HOH L 660 HOH L 680 HOH L 698
SITE 1 AC8 16 HIS H 35 VAL H 37 TRP H 95 PHE H 97
SITE 2 AC8 16 TYR H 100D ASP H 181 ASN L 34 VAL L 89
SITE 3 AC8 16 GLY L 91 THR L 92 HIS L 93 PHE L 94
SITE 4 AC8 16 TYR L 96 PHE L 98 ZN L 604 HOH L 609
CRYST1 78.271 78.271 158.674 90.00 90.00 120.00 P 31 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012776 0.007376 0.000000 0.00000
SCALE2 0.000000 0.014752 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006302 0.00000