HEADER LUMINESCENCE 28-AUG-98 1YFP TITLE STRUCTURE OF YELLOW-EMISSION VARIANT OF GFP COMPND MOL_ID: 1; COMPND 2 MOLECULE: YELLOW FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_TAXID: 6100; SOURCE 4 ORGAN: PHOTOGENIC ORGAN; SOURCE 5 TISSUE: CIRCUMORAL RING CANAL; SOURCE 6 GENE: GFP; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: JM109 (DE3); SOURCE 10 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PRSETB (INVITROGEN) KEYWDS LUMINESCENCE, GREEN FLUORESCENT PROTEIN, YELLOW-EMISSION VARIANT, KEYWDS 2 BIOLUMINESCENCE, PHOTOACTIVE PROTEIN, FLUORESCENT TAG EXPDTA X-RAY DIFFRACTION AUTHOR R.M.WACHTER,M.-A.ELSLIGER,K.KALLIO,G.T.HANSON,S.J.REMINGTON REVDAT 6 09-AUG-23 1YFP 1 REMARK REVDAT 5 03-NOV-21 1YFP 1 SEQADV LINK REVDAT 4 19-MAY-09 1YFP 1 SEQADV REVDAT 3 24-FEB-09 1YFP 1 VERSN REVDAT 2 01-APR-03 1YFP 1 JRNL REVDAT 1 28-OCT-98 1YFP 0 JRNL AUTH R.M.WACHTER,M.A.ELSLIGER,K.KALLIO,G.T.HANSON,S.J.REMINGTON JRNL TITL STRUCTURAL BASIS OF SPECTRAL SHIFTS IN THE YELLOW-EMISSION JRNL TITL 2 VARIANTS OF GREEN FLUORESCENT PROTEIN. JRNL REF STRUCTURE V. 6 1267 1998 JRNL REFN ISSN 0969-2126 JRNL PMID 9782051 JRNL DOI 10.1016/S0969-2126(98)00127-0 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 18916 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1960 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 53039 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 28.200 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.013 ; 1.000 ; 3658 REMARK 3 BOND ANGLES (DEGREES) : 1.720 ; 3.100 ; 4934 REMARK 3 TORSION ANGLES (DEGREES) : 20.360; 0.000 ; 2126 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.090 ; 1.500 ; 98 REMARK 3 GENERAL PLANES (A) : 0.013 ; 8.000 ; 530 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 4.400 ; 1.500 ; 3636 REMARK 3 NON-BONDED CONTACTS (A) : 0.040 ; 10.000; 57 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.82 REMARK 3 BSOL : 150.0 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : TNT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YFP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177392. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-97 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18916 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: TNT REMARK 200 STARTING MODEL: PDB ENTRY 1EMA REMARK 200 REMARK 200 REMARK: ISOMORPHOUS REPLACEMENT REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: YFP WAS CONCENTRATED TO 10 MG/ML IN 50 REMARK 280 MM HEPES PH 7.5. ROD-SHAPED CRYSTALS WITH APPROXIMATE DIMENSIONS REMARK 280 OF 0.8 X 0.12 X 0.03 MM WERE GROWN IN HANGING DROPS CONTAINING 5 REMARK 280 MICROLITERS PROTEIN AND 5 MICROLITERS MOTHER LIQUOR AT 15 REMARK 280 DEGREES C AFTER 2 WEEKS. THE MOTHER LIQUOR CONTAINED 2.2 M REMARK 280 SODIUM/POTASSIUM PHOSPHATE PH 6.9., VAPOR DIFFUSION - HANGING REMARK 280 DROP, TEMPERATURE 288K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.65400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.82750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.65400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.82750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CB CG CD CE NZ REMARK 470 GLU A 5 CD OE1 OE2 REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 THR A 9 OG1 REMARK 470 GLU A 17 CD OE1 OE2 REMARK 470 ASP A 19 CG OD1 OD2 REMARK 470 LYS A 26 CE NZ REMARK 470 GLU A 32 CD OE1 OE2 REMARK 470 GLU A 34 OE2 REMARK 470 LYS A 41 CE NZ REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 CRO A 66 CB1 CG1 OG1 REMARK 470 ARG A 73 CZ NH1 NH2 REMARK 470 ASP A 76 CG OD1 OD2 REMARK 470 LYS A 79 CE NZ REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 90 CD OE1 OE2 REMARK 470 LYS A 101 CE NZ REMARK 470 LYS A 107 CE NZ REMARK 470 GLU A 111 CD OE1 OE2 REMARK 470 LYS A 113 CE NZ REMARK 470 ASP A 117 CG OD1 OD2 REMARK 470 ARG A 122 NH1 REMARK 470 GLU A 124 CD OE1 OE2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 ILE A 128 CD1 REMARK 470 ASP A 129 OD1 OD2 REMARK 470 LYS A 131 CE NZ REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 ASP A 133 CG OD1 OD2 REMARK 470 LYS A 140 CE NZ REMARK 470 GLU A 142 OE2 REMARK 470 ASP A 155 OD2 REMARK 470 LYS A 156 NZ REMARK 470 GLN A 157 CG CD OE1 NE2 REMARK 470 LYS A 158 CD CE NZ REMARK 470 LYS A 162 NZ REMARK 470 LYS A 166 CE NZ REMARK 470 ARG A 168 NE CZ NH2 REMARK 470 GLU A 172 CG CD OE1 OE2 REMARK 470 GLN A 184 CG CD OE1 NE2 REMARK 470 ASP A 190 OD1 REMARK 470 ASP A 197 OD1 OD2 REMARK 470 LYS A 214 CE NZ REMARK 470 ARG A 215 CZ NH1 NH2 REMARK 470 LYS B 3 CB CG CD CE NZ REMARK 470 GLU B 5 CD OE1 OE2 REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 THR B 9 OG1 REMARK 470 GLU B 17 CD OE1 OE2 REMARK 470 ASP B 19 CG OD1 OD2 REMARK 470 LYS B 26 CE NZ REMARK 470 GLU B 32 CD OE1 OE2 REMARK 470 GLU B 34 OE2 REMARK 470 LYS B 41 CE NZ REMARK 470 LYS B 52 CG CD CE NZ REMARK 470 CRO B 66 CB1 CG1 OG1 REMARK 470 ARG B 73 CZ NH1 NH2 REMARK 470 ASP B 76 CG OD1 OD2 REMARK 470 LYS B 79 CE NZ REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 90 CD OE1 OE2 REMARK 470 LYS B 101 CE NZ REMARK 470 LYS B 107 CE NZ REMARK 470 GLU B 111 CD OE1 OE2 REMARK 470 LYS B 113 CE NZ REMARK 470 ASP B 117 CG OD1 OD2 REMARK 470 ARG B 122 NH1 REMARK 470 GLU B 124 CD OE1 OE2 REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 ILE B 128 CD1 REMARK 470 ASP B 129 OD1 OD2 REMARK 470 LYS B 131 CE NZ REMARK 470 GLU B 132 CG CD OE1 OE2 REMARK 470 ASP B 133 CG OD1 OD2 REMARK 470 LYS B 140 CE NZ REMARK 470 GLU B 142 OE2 REMARK 470 ASP B 155 OD2 REMARK 470 LYS B 156 NZ REMARK 470 GLN B 157 CG CD OE1 NE2 REMARK 470 LYS B 158 CD CE NZ REMARK 470 LYS B 162 NZ REMARK 470 LYS B 166 CE NZ REMARK 470 ARG B 168 NE CZ NH2 REMARK 470 GLU B 172 CG CD OE1 OE2 REMARK 470 GLN B 184 CG CD OE1 NE2 REMARK 470 ASP B 190 OD1 REMARK 470 ASP B 197 OD1 OD2 REMARK 470 LYS B 214 CE NZ REMARK 470 ARG B 215 CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 3 N REMARK 480 LYS B 3 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 248 O HOH B 250 4556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 21 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 21 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 82 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 82 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP A 103 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 103 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 180 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 180 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 210 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 210 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP B 21 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP B 21 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP B 82 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 82 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP B 103 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 103 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP B 180 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 180 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP B 210 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 210 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -152.91 -135.85 REMARK 500 ILE A 136 -73.48 -73.43 REMARK 500 ASP B 103 -152.92 -135.83 REMARK 500 ILE B 136 -73.47 -73.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 THE CHROMOPHORE CRO IS GENERATED BY AN AUTOCATALYTIC CYCLIZATION REMARK 999 OF THE POLYPEPTIDE BACKBONE OF SER 65, TYR 66, GLY 67. RESIDUES REMARK 999 SER65 UNDER WENT MUTATION TO GLY65 BEFORE CYCLIZATION. DBREF 1YFP A 3 229 UNP P42212 GFP_AEQVI 3 229 DBREF 1YFP B 3 229 UNP P42212 GFP_AEQVI 3 229 SEQADV 1YFP CRO A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 1YFP CRO A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 1YFP CRO A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 1YFP LEU A 68 UNP P42212 VAL 68 ENGINEERED MUTATION SEQADV 1YFP ALA A 72 UNP P42212 SER 72 ENGINEERED MUTATION SEQADV 1YFP ARG A 80 UNP P4221 GLN 80 CLONING ARTIFACT SEQADV 1YFP TYR A 203 UNP P42212 THR 203 ENGINEERED MUTATION SEQADV 1YFP CRO B 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 1YFP CRO B 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 1YFP CRO B 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 1YFP LEU B 68 UNP P42212 VAL 68 ENGINEERED MUTATION SEQADV 1YFP ALA B 72 UNP P42212 SER 72 ENGINEERED MUTATION SEQADV 1YFP ARG B 80 UNP P4221 GLN 80 CLONING ARTIFACT SEQADV 1YFP TYR B 203 UNP P42212 THR 203 ENGINEERED MUTATION SEQRES 1 A 225 LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO ILE LEU SEQRES 2 A 225 VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS PHE SER SEQRES 3 A 225 VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR GLY LYS SEQRES 4 A 225 LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS LEU PRO SEQRES 5 A 225 VAL PRO TRP PRO THR LEU VAL THR THR PHE CRO LEU GLN SEQRES 6 A 225 CYS PHE ALA ARG TYR PRO ASP HIS MET LYS ARG HIS ASP SEQRES 7 A 225 PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL GLN GLU SEQRES 8 A 225 ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR LYS THR SEQRES 9 A 225 ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU VAL ASN SEQRES 10 A 225 ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU ASP GLY SEQRES 11 A 225 ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR ASN SER SEQRES 12 A 225 HIS ASN VAL TYR ILE MET ALA ASP LYS GLN LYS ASN GLY SEQRES 13 A 225 ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN ILE GLU ASP SEQRES 14 A 225 GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN ASN THR SEQRES 15 A 225 PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP ASN HIS SEQRES 16 A 225 TYR LEU SER TYR GLN SER ALA LEU SER LYS ASP PRO ASN SEQRES 17 A 225 GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE VAL THR SEQRES 18 A 225 ALA ALA GLY ILE SEQRES 1 B 225 LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO ILE LEU SEQRES 2 B 225 VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS PHE SER SEQRES 3 B 225 VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR GLY LYS SEQRES 4 B 225 LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS LEU PRO SEQRES 5 B 225 VAL PRO TRP PRO THR LEU VAL THR THR PHE CRO LEU GLN SEQRES 6 B 225 CYS PHE ALA ARG TYR PRO ASP HIS MET LYS ARG HIS ASP SEQRES 7 B 225 PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL GLN GLU SEQRES 8 B 225 ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR LYS THR SEQRES 9 B 225 ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU VAL ASN SEQRES 10 B 225 ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU ASP GLY SEQRES 11 B 225 ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR ASN SER SEQRES 12 B 225 HIS ASN VAL TYR ILE MET ALA ASP LYS GLN LYS ASN GLY SEQRES 13 B 225 ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN ILE GLU ASP SEQRES 14 B 225 GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN ASN THR SEQRES 15 B 225 PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP ASN HIS SEQRES 16 B 225 TYR LEU SER TYR GLN SER ALA LEU SER LYS ASP PRO ASN SEQRES 17 B 225 GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE VAL THR SEQRES 18 B 225 ALA ALA GLY ILE MODRES 1YFP CRO A 66 GLY MODRES 1YFP CRO A 66 TYR MODRES 1YFP CRO A 66 GLY MODRES 1YFP CRO B 66 GLY MODRES 1YFP CRO B 66 TYR MODRES 1YFP CRO B 66 GLY HET CRO A 66 19 HET CRO B 66 19 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 1 CRO 2(C15 H17 N3 O5) FORMUL 3 HOH *102(H2 O) HELIX 1 1 GLY A 4 PHE A 8 5 5 HELIX 2 2 TRP A 57 LEU A 60 5 4 HELIX 3 3 GLN A 69 PHE A 71 5 3 HELIX 4 4 ASP A 76 HIS A 81 5 6 HELIX 5 5 PHE A 83 ALA A 87 1 5 HELIX 6 6 GLY B 4 PHE B 8 5 5 HELIX 7 7 TRP B 57 LEU B 60 5 4 HELIX 8 8 GLN B 69 PHE B 71 5 3 HELIX 9 9 ASP B 76 HIS B 81 5 6 HELIX 10 10 PHE B 83 ALA B 87 1 5 SHEET 1 A12 HIS A 25 ASP A 36 0 SHEET 2 A12 VAL A 11 VAL A 22 -1 N VAL A 22 O HIS A 25 SHEET 3 A12 THR A 118 ILE A 128 1 N LEU A 119 O LEU A 15 SHEET 4 A12 ASN A 105 GLU A 115 -1 N GLU A 115 O THR A 118 SHEET 5 A12 TYR A 92 PHE A 100 -1 N ILE A 98 O TYR A 106 SHEET 6 A12 VAL A 176 PRO A 187 -1 N THR A 186 O VAL A 93 SHEET 7 A12 GLY A 160 ASN A 170 -1 N HIS A 169 O GLN A 177 SHEET 8 A12 HIS A 148 ASP A 155 -1 N ASP A 155 O GLY A 160 SHEET 9 A12 HIS A 199 SER A 208 -1 N TYR A 203 O HIS A 148 SHEET 10 A12 HIS A 217 ALA A 227 -1 N ALA A 227 O TYR A 200 SHEET 11 A12 LYS A 41 CYS A 48 -1 N PHE A 46 O MET A 218 SHEET 12 A12 VAL A 29 ASP A 36 -1 N ASP A 36 O LYS A 41 SHEET 1 B12 HIS B 25 ASP B 36 0 SHEET 2 B12 VAL B 11 VAL B 22 -1 N VAL B 22 O HIS B 25 SHEET 3 B12 THR B 118 ILE B 128 1 N LEU B 119 O LEU B 15 SHEET 4 B12 ASN B 105 GLU B 115 -1 N GLU B 115 O THR B 118 SHEET 5 B12 TYR B 92 PHE B 100 -1 N ILE B 98 O TYR B 106 SHEET 6 B12 VAL B 176 PRO B 187 -1 N THR B 186 O VAL B 93 SHEET 7 B12 GLY B 160 ASN B 170 -1 N HIS B 169 O GLN B 177 SHEET 8 B12 HIS B 148 ASP B 155 -1 N ASP B 155 O GLY B 160 SHEET 9 B12 HIS B 199 SER B 208 -1 N TYR B 203 O HIS B 148 SHEET 10 B12 HIS B 217 ALA B 227 -1 N ALA B 227 O TYR B 200 SHEET 11 B12 LYS B 41 CYS B 48 -1 N PHE B 46 O MET B 218 SHEET 12 B12 VAL B 29 ASP B 36 -1 N ASP B 36 O LYS B 41 LINK C PHE A 64 N1 CRO A 66 1555 1555 1.33 LINK C3 CRO A 66 N LEU A 68 1555 1555 1.31 LINK C PHE B 64 N1 CRO B 66 1555 1555 1.33 LINK C3 CRO B 66 N LEU B 68 1555 1555 1.31 CISPEP 1 MET A 88 PRO A 89 0 4.25 CISPEP 2 MET B 88 PRO B 89 0 4.16 CRYST1 77.308 117.655 62.919 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012935 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008499 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015893 0.00000 MTRIX1 1 -0.999980 -0.003090 -0.006190 98.20640 1 MTRIX2 1 -0.003190 -0.586610 0.809860 21.13800 1 MTRIX3 1 -0.006130 0.809860 0.586590 -10.77660 1