HEADER HYDROLASE 07-JAN-05 1YHC TITLE CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS LPXC DEACETYLASE COMPLEXED WITH TITLE 2 CACODYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE COMPND 3 DEACETYLASE; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: UDP-3-O-ACYL-GLCNAC DEACETYLASE; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 GENE: LPXC, ENVA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS X-RAY CRYSTALLOGRAPHY; A.AEOLICUS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HERNICK,H.A.GENNADIOS,D.A.WHITTINGTON,K.M.RUSCHE,D.W.CHRISTIANSON, AUTHOR 2 C.A.FIERKE REVDAT 6 23-AUG-23 1YHC 1 REMARK REVDAT 5 20-OCT-21 1YHC 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1YHC 1 VERSN REVDAT 3 24-FEB-09 1YHC 1 VERSN REVDAT 2 03-MAY-05 1YHC 1 JRNL REVDAT 1 15-FEB-05 1YHC 0 JRNL AUTH M.HERNICK,H.A.GENNADIOS,D.A.WHITTINGTON,K.M.RUSCHE, JRNL AUTH 2 D.W.CHRISTIANSON,C.A.FIERKE JRNL TITL UDP-3-O-((R)-3-HYDROXYMYRISTOYL)-N-ACETYLGLUCOSAMINE JRNL TITL 2 DEACETYLASE FUNCTIONS THROUGH A GENERAL ACID-BASE CATALYST JRNL TITL 3 PAIR MECHANISM JRNL REF J.BIOL.CHEM. V. 280 16969 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15705580 JRNL DOI 10.1074/JBC.M413560200 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2088 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3890 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 201 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 319 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.24000 REMARK 3 B22 (A**2) : 2.24000 REMARK 3 B33 (A**2) : -4.47900 REMARK 3 B12 (A**2) : -1.26300 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.67 REMARK 3 ESD FROM SIGMAA (A) : 0.26 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.700 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YHC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031510. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : BENDING MAGNET REMARK 200 OPTICS : BENDING MAGNET REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41614 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.190 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.98 REMARK 200 R MERGE FOR SHELL (I) : 0.35900 REMARK 200 R SYM FOR SHELL (I) : 0.35900 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1P42 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, NACL, ZNSO4, HEPES, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.91500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.83000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.37250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 102.28750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.45750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -241.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -50.63950 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 87.71019 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -40.91500 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 280 REMARK 465 LEU A 281 REMARK 465 THR A 282 REMARK 465 ARG A 283 REMARK 465 LYS B 280 REMARK 465 LEU B 281 REMARK 465 THR B 282 REMARK 465 ARG B 283 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 104 -125.58 56.42 REMARK 500 ASN A 124 53.53 -96.51 REMARK 500 ASP A 140 113.30 -170.02 REMARK 500 GLU A 141 66.90 37.98 REMARK 500 SER A 150 137.52 -173.65 REMARK 500 SER B 59 160.38 177.09 REMARK 500 LEU B 104 -125.00 55.32 REMARK 500 ARG B 125 133.32 -172.74 REMARK 500 ASP B 140 107.35 -173.32 REMARK 500 SER B 150 140.35 -178.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 2 N REMARK 620 2 GLU A 126 OE1 111.8 REMARK 620 3 GLU A 126 OE2 81.3 53.2 REMARK 620 4 HIS B 29 NE2 101.1 121.6 88.0 REMARK 620 5 GLU B 95 OE1 118.8 97.9 150.7 106.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 606 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 58 NE2 REMARK 620 2 HIS A 200 NE2 112.7 REMARK 620 3 CL A 334 CL 113.7 113.3 REMARK 620 4 CL A 336 CL 97.5 93.0 124.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 NE2 REMARK 620 2 HIS A 238 NE2 102.8 REMARK 620 3 ASP A 242 OD1 100.4 106.4 REMARK 620 4 CAC A 401 O2 104.6 96.7 141.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 607 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 58 NE2 REMARK 620 2 HIS B 200 NE2 119.0 REMARK 620 3 CL B 335 CL 95.6 107.2 REMARK 620 4 HOH B 947 O 108.6 110.7 115.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 79 NE2 REMARK 620 2 HIS B 238 NE2 102.5 REMARK 620 3 ASP B 242 OD1 96.5 106.3 REMARK 620 4 ASP B 242 OD2 149.0 89.9 52.5 REMARK 620 5 CAC B 402 O2 106.3 96.8 143.1 100.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 336 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PAM B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PAM A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P42 RELATED DB: PDB REMARK 900 THE ZINC-INHIBITED ENZYME REMARK 900 RELATED ID: 1XXE RELATED DB: PDB REMARK 900 THE NMR STRUCTURE OF THE ENZYME COMPLEXED WITH TU-514 REMARK 900 RELATED ID: 1YH8 RELATED DB: PDB DBREF 1YHC A 2 283 UNP O67648 LPXC_AQUAE 2 271 DBREF 1YHC B 2 283 UNP O67648 LPXC_AQUAE 2 271 SEQADV 1YHC ALA A 114 UNP O67648 CYS 181 ENGINEERED MUTATION SEQADV 1YHC ALA B 114 UNP O67648 CYS 181 ENGINEERED MUTATION SEQRES 1 A 270 GLY LEU GLU LYS THR VAL LYS GLU LYS LEU SER PHE GLU SEQRES 2 A 270 GLY VAL GLY ILE HIS THR GLY GLU TYR SER LYS LEU ILE SEQRES 3 A 270 ILE HIS PRO GLU LYS GLU GLY THR GLY ILE ARG PHE PHE SEQRES 4 A 270 LYS ASN GLY VAL TYR ILE PRO ALA ARG HIS GLU PHE VAL SEQRES 5 A 270 VAL HIS THR ASN HIS SER THR ASP LEU GLY PHE LYS GLY SEQRES 6 A 270 GLN ARG ILE LYS THR VAL GLU HIS ILE LEU SER VAL LEU SEQRES 7 A 270 HIS LEU LEU GLU ILE THR ASN VAL THR ILE GLU VAL ILE SEQRES 8 A 270 GLY ASN GLU ILE PRO ILE LEU ASP GLY SER GLY TRP GLU SEQRES 9 A 270 PHE TYR GLU ALA ILE ARG LYS ASN ILE LEU ASN GLN ASN SEQRES 10 A 270 ARG GLU ILE ASP TYR PHE VAL VAL GLU GLU PRO ILE ILE SEQRES 11 A 270 VAL GLU ASP GLU GLY ARG LEU ILE LYS ALA GLU PRO SER SEQRES 12 A 270 ASP THR LEU GLU VAL THR TYR GLU GLY GLU PHE LYS ASN SEQRES 13 A 270 PHE LEU GLY ARG GLN LYS PHE THR PHE VAL GLU GLY ASN SEQRES 14 A 270 GLU GLU GLU ILE VAL LEU ALA ARG THR PHE ALA PHE ASP SEQRES 15 A 270 TRP GLU ILE GLU HIS ILE LYS LYS VAL GLY LEU GLY LYS SEQRES 16 A 270 GLY GLY SER LEU LYS ASN THR LEU VAL LEU GLY LYS ASP SEQRES 17 A 270 LYS VAL TYR ASN PRO GLU GLY LEU ARG TYR GLU ASN GLU SEQRES 18 A 270 PRO VAL ARG HIS LYS VAL PHE ASP LEU ILE GLY ASP LEU SEQRES 19 A 270 TYR LEU LEU GLY SER PRO VAL LYS GLY LYS PHE TYR SER SEQRES 20 A 270 PHE ARG GLY GLY HIS SER LEU ASN VAL LYS LEU VAL LYS SEQRES 21 A 270 GLU LEU ALA LYS LYS GLN LYS LEU THR ARG SEQRES 1 B 270 GLY LEU GLU LYS THR VAL LYS GLU LYS LEU SER PHE GLU SEQRES 2 B 270 GLY VAL GLY ILE HIS THR GLY GLU TYR SER LYS LEU ILE SEQRES 3 B 270 ILE HIS PRO GLU LYS GLU GLY THR GLY ILE ARG PHE PHE SEQRES 4 B 270 LYS ASN GLY VAL TYR ILE PRO ALA ARG HIS GLU PHE VAL SEQRES 5 B 270 VAL HIS THR ASN HIS SER THR ASP LEU GLY PHE LYS GLY SEQRES 6 B 270 GLN ARG ILE LYS THR VAL GLU HIS ILE LEU SER VAL LEU SEQRES 7 B 270 HIS LEU LEU GLU ILE THR ASN VAL THR ILE GLU VAL ILE SEQRES 8 B 270 GLY ASN GLU ILE PRO ILE LEU ASP GLY SER GLY TRP GLU SEQRES 9 B 270 PHE TYR GLU ALA ILE ARG LYS ASN ILE LEU ASN GLN ASN SEQRES 10 B 270 ARG GLU ILE ASP TYR PHE VAL VAL GLU GLU PRO ILE ILE SEQRES 11 B 270 VAL GLU ASP GLU GLY ARG LEU ILE LYS ALA GLU PRO SER SEQRES 12 B 270 ASP THR LEU GLU VAL THR TYR GLU GLY GLU PHE LYS ASN SEQRES 13 B 270 PHE LEU GLY ARG GLN LYS PHE THR PHE VAL GLU GLY ASN SEQRES 14 B 270 GLU GLU GLU ILE VAL LEU ALA ARG THR PHE ALA PHE ASP SEQRES 15 B 270 TRP GLU ILE GLU HIS ILE LYS LYS VAL GLY LEU GLY LYS SEQRES 16 B 270 GLY GLY SER LEU LYS ASN THR LEU VAL LEU GLY LYS ASP SEQRES 17 B 270 LYS VAL TYR ASN PRO GLU GLY LEU ARG TYR GLU ASN GLU SEQRES 18 B 270 PRO VAL ARG HIS LYS VAL PHE ASP LEU ILE GLY ASP LEU SEQRES 19 B 270 TYR LEU LEU GLY SER PRO VAL LYS GLY LYS PHE TYR SER SEQRES 20 B 270 PHE ARG GLY GLY HIS SER LEU ASN VAL LYS LEU VAL LYS SEQRES 21 B 270 GLU LEU ALA LYS LYS GLN LYS LEU THR ARG HET ZN A 601 1 HET ZN A 603 1 HET ZN A 606 1 HET CAC A 401 5 HET SO4 A 404 5 HET CL A 334 1 HET CL A 336 1 HET PAM A 802 36 HET GOL A 701 6 HET ZN B 602 1 HET ZN B 607 1 HET CAC B 402 5 HET SO4 B 403 5 HET CL B 335 1 HET PAM B 801 36 HETNAM ZN ZINC ION HETNAM CAC CACODYLATE ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM PAM PALMITOLEIC ACID HETNAM GOL GLYCEROL HETSYN CAC DIMETHYLARSINATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 5(ZN 2+) FORMUL 6 CAC 2(C2 H6 AS O2 1-) FORMUL 7 SO4 2(O4 S 2-) FORMUL 8 CL 3(CL 1-) FORMUL 10 PAM 2(C16 H30 O2) FORMUL 11 GOL C3 H8 O3 FORMUL 18 HOH *319(H2 O) HELIX 1 1 ARG A 49 GLU A 51 5 3 HELIX 2 2 VAL A 77 LEU A 87 1 11 HELIX 3 3 GLY A 108 LYS A 117 1 10 HELIX 4 4 ASN A 182 ILE A 186 5 5 HELIX 5 5 GLU A 197 VAL A 204 1 8 HELIX 6 6 ASN A 233 TYR A 248 1 16 HELIX 7 7 LEU A 249 GLY A 251 5 3 HELIX 8 8 GLY A 264 GLN A 279 1 16 HELIX 9 9 ARG B 49 GLU B 51 5 3 HELIX 10 10 VAL B 77 LEU B 87 1 11 HELIX 11 11 GLY B 108 LYS B 117 1 10 HELIX 12 12 ASN B 182 ILE B 186 5 5 HELIX 13 13 GLU B 197 VAL B 204 1 8 HELIX 14 14 ASN B 233 TYR B 248 1 16 HELIX 15 15 LEU B 249 GLY B 251 5 3 HELIX 16 16 GLY B 264 GLN B 279 1 16 SHEET 1 A 2 LEU A 3 VAL A 7 0 SHEET 2 A 2 ILE A 120 GLU A 126 -1 O ARG A 125 N GLU A 4 SHEET 1 B 5 LEU A 11 VAL A 16 0 SHEET 2 B 5 TYR A 23 PRO A 30 -1 O LEU A 26 N PHE A 13 SHEET 3 B 5 VAL A 92 ILE A 97 -1 O THR A 93 N HIS A 29 SHEET 4 B 5 ILE A 37 LYS A 41 1 N PHE A 40 O VAL A 96 SHEET 5 B 5 VAL A 44 PRO A 47 -1 O ILE A 46 N PHE A 39 SHEET 1 C 3 VAL A 53 HIS A 55 0 SHEET 2 C 3 ASP A 61 PHE A 69 -1 O ASP A 61 N HIS A 55 SHEET 3 C 3 GLN A 72 ILE A 74 -1 O ILE A 74 N LEU A 62 SHEET 1 D 2 PHE A 130 VAL A 131 0 SHEET 2 D 2 VAL A 254 LYS A 255 1 O LYS A 255 N PHE A 130 SHEET 1 E 5 ILE A 136 ASP A 140 0 SHEET 2 E 5 ARG A 143 GLU A 148 -1 O ALA A 147 N ILE A 136 SHEET 3 E 5 LYS A 257 PHE A 261 -1 O PHE A 261 N LEU A 144 SHEET 4 E 5 GLU A 154 GLU A 160 1 N GLU A 154 O PHE A 258 SHEET 5 E 5 ARG A 170 VAL A 179 -1 O PHE A 175 N VAL A 155 SHEET 1 F 2 PHE A 192 PHE A 194 0 SHEET 2 F 2 LEU A 216 LEU A 218 1 O LEU A 218 N ALA A 193 SHEET 1 G 2 LEU B 3 VAL B 7 0 SHEET 2 G 2 ILE B 120 GLU B 126 -1 O ARG B 125 N GLU B 4 SHEET 1 H 5 LEU B 11 VAL B 16 0 SHEET 2 H 5 TYR B 23 PRO B 30 -1 O ILE B 28 N LEU B 11 SHEET 3 H 5 VAL B 92 ILE B 97 -1 O THR B 93 N HIS B 29 SHEET 4 H 5 ILE B 37 LYS B 41 1 N PHE B 40 O VAL B 96 SHEET 5 H 5 VAL B 44 PRO B 47 -1 O ILE B 46 N PHE B 39 SHEET 1 I 3 VAL B 53 HIS B 55 0 SHEET 2 I 3 ASP B 61 PHE B 69 -1 O ASP B 61 N HIS B 55 SHEET 3 I 3 GLN B 72 ILE B 74 -1 O ILE B 74 N LEU B 62 SHEET 1 J 2 PHE B 130 VAL B 131 0 SHEET 2 J 2 VAL B 254 LYS B 255 1 O LYS B 255 N PHE B 130 SHEET 1 K 5 ILE B 136 ASP B 140 0 SHEET 2 K 5 ARG B 143 GLU B 148 -1 O ALA B 147 N ILE B 136 SHEET 3 K 5 LYS B 257 PHE B 261 -1 O PHE B 261 N LEU B 144 SHEET 4 K 5 GLU B 154 GLU B 160 1 N GLU B 154 O PHE B 258 SHEET 5 K 5 ARG B 170 VAL B 179 -1 O PHE B 175 N VAL B 155 SHEET 1 L 2 PHE B 192 PHE B 194 0 SHEET 2 L 2 LEU B 216 LEU B 218 1 O LEU B 218 N ALA B 193 LINK N GLY A 2 ZN ZN A 603 1555 1555 2.27 LINK NE2 HIS A 58 ZN ZN A 606 1555 1555 2.10 LINK NE2 HIS A 79 ZN ZN A 601 1555 1555 2.08 LINK OE1 GLU A 126 ZN ZN A 603 1555 1555 2.00 LINK OE2 GLU A 126 ZN ZN A 603 1555 1555 2.69 LINK NE2 HIS A 200 ZN ZN A 606 1555 1555 2.09 LINK NE2 HIS A 238 ZN ZN A 601 1555 1555 2.04 LINK OD1 ASP A 242 ZN ZN A 601 1555 1555 2.11 LINK CL CL A 334 ZN ZN A 606 1555 1555 2.12 LINK CL CL A 336 ZN ZN A 606 1555 1555 1.97 LINK O2 CAC A 401 ZN ZN A 601 1555 1555 2.08 LINK ZN ZN A 603 NE2 HIS B 29 1555 3564 2.08 LINK ZN ZN A 603 OE1 GLU B 95 1555 3564 1.89 LINK NE2 HIS B 58 ZN ZN B 607 1555 1555 2.13 LINK NE2 HIS B 79 ZN ZN B 602 1555 1555 2.00 LINK NE2 HIS B 200 ZN ZN B 607 1555 1555 2.14 LINK NE2 HIS B 238 ZN ZN B 602 1555 1555 2.04 LINK OD1 ASP B 242 ZN ZN B 602 1555 1555 2.12 LINK OD2 ASP B 242 ZN ZN B 602 1555 1555 2.70 LINK CL CL B 335 ZN ZN B 607 1555 1555 2.45 LINK O2 CAC B 402 ZN ZN B 602 1555 1555 2.10 LINK ZN ZN B 607 O HOH B 947 1555 6665 2.18 SITE 1 AC1 5 HIS A 79 THR A 191 HIS A 238 ASP A 242 SITE 2 AC1 5 CAC A 401 SITE 1 AC2 5 HIS B 79 THR B 191 HIS B 238 ASP B 242 SITE 2 AC2 5 CAC B 402 SITE 1 AC3 5 GLY A 2 GLU A 126 ILE B 27 HIS B 29 SITE 2 AC3 5 GLU B 95 SITE 1 AC4 4 HIS A 58 HIS A 200 CL A 334 CL A 336 SITE 1 AC5 4 HIS B 58 HIS B 200 CL B 335 HOH B 947 SITE 1 AC6 10 HIS A 58 GLU A 78 HIS A 79 THR A 191 SITE 2 AC6 10 HIS A 238 ASP A 242 HIS A 265 SO4 A 404 SITE 3 AC6 10 ZN A 601 PAM A 802 SITE 1 AC7 10 HIS B 58 GLU B 78 HIS B 79 THR B 191 SITE 2 AC7 10 HIS B 238 ASP B 242 HIS B 265 SO4 B 403 SITE 3 AC7 10 ZN B 602 PAM B 801 SITE 1 AC8 9 THR B 56 HIS B 58 LYS B 239 GLY B 264 SITE 2 AC8 9 HIS B 265 CAC B 402 PAM B 801 HOH B 881 SITE 3 AC8 9 HOH B 946 SITE 1 AC9 8 HIS A 58 LYS A 239 GLY A 264 HIS A 265 SITE 2 AC9 8 CAC A 401 PAM A 802 HOH A 931 HOH A 969 SITE 1 BC1 6 ASN A 57 HIS A 58 PHE A 167 HIS A 200 SITE 2 BC1 6 CL A 336 ZN A 606 SITE 1 BC2 3 HIS B 58 HIS B 200 ZN B 607 SITE 1 BC3 4 HIS A 58 HIS A 200 CL A 334 ZN A 606 SITE 1 BC4 16 TYR A 224 PAM A 802 ILE B 18 HIS B 58 SITE 2 BC4 16 PHE B 192 ALA B 193 GLU B 197 ILE B 198 SITE 3 BC4 16 ILE B 201 GLY B 210 VAL B 217 CAC B 402 SITE 4 BC4 16 SO4 B 403 HOH B 827 HOH B 939 HOH B 940 SITE 1 BC5 13 HIS A 19 HIS A 58 PHE A 192 GLU A 197 SITE 2 BC5 13 ILE A 198 ILE A 201 GLY A 210 SER A 211 SITE 3 BC5 13 LEU A 212 VAL A 217 CAC A 401 SO4 A 404 SITE 4 BC5 13 PAM B 801 SITE 1 BC6 8 VAL A 53 THR A 56 GLU A 158 ARG A 170 SITE 2 BC6 8 GLN A 171 LYS A 172 LYS A 273 HOH A 888 CRYST1 101.279 101.279 122.745 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009874 0.005701 0.000000 0.00000 SCALE2 0.000000 0.011401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008147 0.00000