HEADER LYASE 12-JAN-05 1YIS TITLE STRUCTURAL GENOMICS OF CAENORHABDITIS ELEGANS: ADENYLOSUCCINATE LYASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLOSUCCINATE LYASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FUMARATE LYASE (53.6 KD) (1H824); COMPND 5 EC: 4.3.2.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21-AI; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS CAENORHABDITIS; X-RAY STRUCTURE, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, SOUTHEAST COLLABORATORY FOR STRUCTURAL KEYWDS 3 GENOMICS, SECSG, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.SYMERSKY,N.SCHORMANN,S.LU,Y.ZHANG,E.KARPOVA,S.QIU,W.HUANG,Z.CAO, AUTHOR 2 J.ZHOU,M.LUO,A.ARABSHAHI,A.MCKINSTRY,C.-H.LUAN,D.LUO,D.JOHNSON,J.AN, AUTHOR 3 J.TSAO,L.DELUCAS,Q.SHANG,R.GRAY,S.LI,T.BRAY,Y.-J.CHEN,SOUTHEAST AUTHOR 4 COLLABORATORY FOR STRUCTURAL GENOMICS (SECSG) REVDAT 5 09-OCT-24 1YIS 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1YIS 1 VERSN REVDAT 3 24-FEB-09 1YIS 1 VERSN REVDAT 2 01-FEB-05 1YIS 1 JRNL REVDAT 1 25-JAN-05 1YIS 0 JRNL AUTH J.SYMERSKY,N.SCHORMANN,S.LU,Y.ZHANG,E.KARPOVA,S.QIU,W.HUANG, JRNL AUTH 2 Z.CAO,J.ZHOU,M.LUO,A.ARABSHAHI,A.MCKINSTRY,C.-H.LUAN,D.LUO, JRNL AUTH 3 D.JOHNSON,J.AN,J.TSAO,L.DELUCAS,Q.SHANG,R.GRAY,S.LI,T.BRAY, JRNL AUTH 4 Y.-J.CHEN JRNL TITL STRUCTURAL GENOMICS OF CAENORHABDITIS ELEGANS: JRNL TITL 2 ADENYLOSUCCINATE LYASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 48307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.200 REMARK 3 FREE R VALUE TEST SET COUNT : 4420 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7584 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 456 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3318 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.55200 REMARK 3 B22 (A**2) : -3.55200 REMARK 3 B33 (A**2) : 7.10500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.720 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.191 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.899 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.429 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.399 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 47.40 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YIS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97928 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48307 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.21500 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.49 M AMMONIUM SULFATE, 0.1 M CITRIC REMARK 280 ACID, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 62.12100 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 62.12100 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 82.56350 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 62.12100 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 62.12100 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 82.56350 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 62.12100 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 62.12100 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 82.56350 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 62.12100 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 62.12100 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 82.56350 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 62.12100 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.12100 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 82.56350 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 62.12100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 62.12100 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 82.56350 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 62.12100 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 62.12100 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 82.56350 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 62.12100 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 62.12100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 82.56350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 25740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -148.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 124.24200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 124.24200 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 PHE A 278 REMARK 465 GLU A 279 REMARK 465 LYS A 280 REMARK 465 ASP A 281 REMARK 465 GLN A 282 REMARK 465 ILE A 283 REMARK 465 GLY A 284 REMARK 465 SER A 285 REMARK 465 SER A 286 REMARK 465 ALA A 287 REMARK 465 MSE A 288 REMARK 465 PRO A 289 REMARK 465 TYR A 290 REMARK 465 THR A 386 REMARK 465 GLU A 387 REMARK 465 GLU A 388 REMARK 465 GLY A 389 REMARK 465 VAL A 390 REMARK 465 ASP A 391 REMARK 465 ARG A 392 REMARK 465 GLN A 393 REMARK 465 GLN A 394 REMARK 465 ALA A 395 REMARK 465 HIS A 396 REMARK 465 ALA A 397 REMARK 465 VAL A 398 REMARK 465 ILE A 399 REMARK 465 ARG A 400 REMARK 465 LYS A 401 REMARK 465 THR A 402 REMARK 465 ALA A 403 REMARK 465 LEU A 404 REMARK 465 GLU A 405 REMARK 465 ALA A 406 REMARK 465 LYS A 407 REMARK 465 GLN A 408 REMARK 465 LEU A 409 REMARK 465 GLN A 410 REMARK 465 ALA A 411 REMARK 465 THR A 412 REMARK 465 GLN A 413 REMARK 465 LYS A 414 REMARK 465 VAL A 415 REMARK 465 ASP A 416 REMARK 465 ILE A 417 REMARK 465 ARG A 418 REMARK 465 LYS A 469 REMARK 465 SER A 470 REMARK 465 ALA A 471 REMARK 465 GLY A 472 REMARK 465 ASN A 473 REMARK 465 VAL A 474 REMARK 465 GLN A 475 REMARK 465 LEU A 476 REMARK 465 ASP A 477 REMARK 465 VAL A 478 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 14 -67.12 -121.89 REMARK 500 ASP A 69 72.36 -106.82 REMARK 500 SER A 160 -161.71 179.99 REMARK 500 LYS A 195 -7.21 -143.76 REMARK 500 LEU A 323 -132.33 47.35 REMARK 500 ARG A 325 139.82 163.65 REMARK 500 SER A 330 -70.74 -52.51 REMARK 500 ASP A 423 -71.74 -87.93 REMARK 500 PHE A 425 -29.02 168.98 REMARK 500 GLU A 458 -53.19 -124.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1C3C RELATED DB: PDB REMARK 900 RELATED ID: 1C3U RELATED DB: PDB REMARK 900 RELATED ID: 1DOF RELATED DB: PDB REMARK 900 RELATED ID: R06C7.5 RELATED DB: TARGETDB DBREF 1YIS A 1 478 UNP Q21774 Q21774_CAEEL 1 478 SEQADV 1YIS MSE A 1 UNP Q21774 MET 1 MODIFIED RESIDUE SEQADV 1YIS MSE A 61 UNP Q21774 MET 61 MODIFIED RESIDUE SEQADV 1YIS MSE A 85 UNP Q21774 MET 85 MODIFIED RESIDUE SEQADV 1YIS MSE A 177 UNP Q21774 MET 177 MODIFIED RESIDUE SEQADV 1YIS MSE A 189 UNP Q21774 MET 189 MODIFIED RESIDUE SEQADV 1YIS MSE A 288 UNP Q21774 MET 288 MODIFIED RESIDUE SEQADV 1YIS MSE A 295 UNP Q21774 MET 295 MODIFIED RESIDUE SEQADV 1YIS MSE A 335 UNP Q21774 MET 335 MODIFIED RESIDUE SEQADV 1YIS MSE A 382 UNP Q21774 MET 382 MODIFIED RESIDUE SEQADV 1YIS MSE A 383 UNP Q21774 MET 383 MODIFIED RESIDUE SEQADV 1YIS MSE A 384 UNP Q21774 MET 384 MODIFIED RESIDUE SEQADV 1YIS MSE A 421 UNP Q21774 MET 421 MODIFIED RESIDUE SEQRES 1 A 478 MSE ALA SER GLU ASP LYS PHE GLU SER VAL LEU SER THR SEQRES 2 A 478 ARG TYR CYS LYS ASN SER PRO LEU VAL SER ILE LEU SER SEQRES 3 A 478 GLU THR ASN LYS ALA THR LEU TRP ARG GLN LEU TRP ILE SEQRES 4 A 478 TRP LEU ALA GLU ALA GLU LYS GLU LEU GLY LEU LYS GLN SEQRES 5 A 478 VAL THR GLN ASP ALA ILE ASP GLU MSE LYS SER ASN ARG SEQRES 6 A 478 ASP VAL PHE ASP TRP PRO PHE ILE ARG SER GLU GLU ARG SEQRES 7 A 478 LYS LEU LYS HIS ASP VAL MSE ALA HIS ASN HIS ALA PHE SEQRES 8 A 478 GLY LYS LEU CYS PRO THR ALA ALA GLY ILE ILE HIS LEU SEQRES 9 A 478 GLY ALA THR SER CYS PHE VAL GLN ASP ASN ALA ASP LEU SEQRES 10 A 478 ILE ALA TYR ARG ASP SER ILE ASP HIS ILE LEU LYS ARG SEQRES 11 A 478 PHE ALA THR VAL ILE ASP ARG LEU ALA ALA PHE SER LEU SEQRES 12 A 478 LYS ASN LYS GLU VAL VAL THR VAL GLY ARG THR HIS TYR SEQRES 13 A 478 GLN THR ALA SER LEU VAL THR VAL GLY LYS ARG GLY VAL SEQRES 14 A 478 LEU TRP ALA GLN GLU LEU LEU MSE ALA PHE GLN SER LEU SEQRES 15 A 478 SER GLU PHE ARG ASP LYS MSE ARG PHE ARG GLY ILE LYS SEQRES 16 A 478 GLY ALA THR GLY THR GLN ASP SER PHE LEU THR LEU PHE SEQRES 17 A 478 ALA GLY ASP GLU SER LYS VAL GLU ALA LEU ASP GLU LEU SEQRES 18 A 478 VAL THR LYS LYS ALA ASN PHE SER ASN ARG PHE LEU ILE SEQRES 19 A 478 THR GLY GLN THR TYR SER ARG GLN GLN ASP SER GLN LEU SEQRES 20 A 478 VAL PHE SER LEU SER LEU LEU GLY ALA ALA ALA LYS LYS SEQRES 21 A 478 VAL CYS THR ASP ILE ARG VAL LEU GLN ALA PHE GLY GLU SEQRES 22 A 478 LEU LEU GLU PRO PHE GLU LYS ASP GLN ILE GLY SER SER SEQRES 23 A 478 ALA MSE PRO TYR LYS LYS ASN PRO MSE LYS SER GLU ARG SEQRES 24 A 478 CYS CYS ALA LEU SER ARG LYS LEU ILE ASN ALA PRO GLN SEQRES 25 A 478 GLU ALA LEU THR ILE LEU ALA ASP GLN GLY LEU GLU ARG SEQRES 26 A 478 THR LEU ASP ASP SER ALA GLY ARG ARG MSE LEU ILE PRO SEQRES 27 A 478 ASP VAL LEU LEU THR ALA GLU ALA LEU LEU THR THR LEU SEQRES 28 A 478 GLN ASN ILE PHE GLU GLY LEU SER VAL GLN THR ASP ASN SEQRES 29 A 478 VAL LYS LYS ILE VAL GLU ASP GLU ILE ALA PHE LEU GLY SEQRES 30 A 478 LEU GLU LYS ALA MSE MSE MSE LEU THR GLU GLU GLY VAL SEQRES 31 A 478 ASP ARG GLN GLN ALA HIS ALA VAL ILE ARG LYS THR ALA SEQRES 32 A 478 LEU GLU ALA LYS GLN LEU GLN ALA THR GLN LYS VAL ASP SEQRES 33 A 478 ILE ARG GLN THR MSE ALA ASP PRO PHE PHE ASP SER VAL SEQRES 34 A 478 ARG ASP ARG VAL VAL GLY LEU VAL ASN ASN PRO ILE ASN SEQRES 35 A 478 PHE THR GLY ARG CYS VAL SER GLN THR GLU SER PHE ILE SEQRES 36 A 478 ALA LYS GLU LEU LYS PRO THR ILE ASP LYS TYR LEU ASP SEQRES 37 A 478 LYS SER ALA GLY ASN VAL GLN LEU ASP VAL MODRES 1YIS MSE A 61 MET SELENOMETHIONINE MODRES 1YIS MSE A 85 MET SELENOMETHIONINE MODRES 1YIS MSE A 177 MET SELENOMETHIONINE MODRES 1YIS MSE A 189 MET SELENOMETHIONINE MODRES 1YIS MSE A 295 MET SELENOMETHIONINE MODRES 1YIS MSE A 335 MET SELENOMETHIONINE MODRES 1YIS MSE A 382 MET SELENOMETHIONINE MODRES 1YIS MSE A 383 MET SELENOMETHIONINE MODRES 1YIS MSE A 384 MET SELENOMETHIONINE MODRES 1YIS MSE A 421 MET SELENOMETHIONINE HET MSE A 61 8 HET MSE A 85 8 HET MSE A 177 8 HET MSE A 189 8 HET MSE A 295 8 HET MSE A 335 8 HET MSE A 382 8 HET MSE A 383 8 HET MSE A 384 8 HET MSE A 421 8 HET SO4 A1001 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *228(H2 O) HELIX 1 1 ALA A 2 LYS A 6 5 5 HELIX 2 2 SER A 9 ARG A 14 1 6 HELIX 3 3 PRO A 20 LEU A 25 1 6 HELIX 4 4 SER A 26 LEU A 48 1 23 HELIX 5 5 THR A 54 ASN A 64 1 11 HELIX 6 6 ASP A 69 LEU A 80 1 12 HELIX 7 7 HIS A 82 CYS A 95 1 14 HELIX 8 8 ALA A 98 ILE A 102 5 5 HELIX 9 9 THR A 107 ASN A 145 1 39 HELIX 10 10 VAL A 164 MSE A 189 1 26 HELIX 11 11 GLN A 201 PHE A 208 1 8 HELIX 12 12 ASP A 211 ALA A 226 1 16 HELIX 13 13 ARG A 241 PHE A 271 1 31 HELIX 14 14 PRO A 294 ASN A 309 1 16 HELIX 15 15 ALA A 310 ASP A 320 1 11 HELIX 16 16 THR A 326 ASP A 328 5 3 HELIX 17 17 ASP A 329 LEU A 358 1 30 HELIX 18 18 GLN A 361 LEU A 385 1 25 HELIX 19 19 VAL A 429 ASN A 439 1 11 HELIX 20 20 PRO A 440 THR A 444 5 5 HELIX 21 21 ARG A 446 GLU A 458 1 13 HELIX 22 22 GLU A 458 ASP A 464 1 7 HELIX 23 23 LYS A 465 LEU A 467 5 3 SHEET 1 A 2 VAL A 149 THR A 154 0 SHEET 2 A 2 GLN A 157 THR A 163 -1 O VAL A 162 N THR A 150 SHEET 1 B 2 LEU A 274 LEU A 275 0 SHEET 2 B 2 SER A 359 VAL A 360 -1 O SER A 359 N LEU A 275 SSBOND 1 CYS A 262 CYS A 300 1555 1555 2.04 LINK C GLU A 60 N MSE A 61 1555 1555 1.33 LINK C MSE A 61 N LYS A 62 1555 1555 1.33 LINK C VAL A 84 N MSE A 85 1555 1555 1.33 LINK C MSE A 85 N ALA A 86 1555 1555 1.33 LINK C LEU A 176 N MSE A 177 1555 1555 1.33 LINK C MSE A 177 N ALA A 178 1555 1555 1.33 LINK C LYS A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N ARG A 190 1555 1555 1.33 LINK C PRO A 294 N MSE A 295 1555 1555 1.33 LINK C MSE A 295 N LYS A 296 1555 1555 1.33 LINK C ARG A 334 N MSE A 335 1555 1555 1.33 LINK C MSE A 335 N LEU A 336 1555 1555 1.33 LINK C ALA A 381 N MSE A 382 1555 1555 1.33 LINK C MSE A 382 N MSE A 383 1555 1555 1.33 LINK C MSE A 383 N MSE A 384 1555 1555 1.33 LINK C MSE A 384 N LEU A 385 1555 1555 1.33 LINK C THR A 420 N MSE A 421 1555 1555 1.33 LINK C MSE A 421 N ALA A 422 1555 1555 1.33 CISPEP 1 ASP A 423 PRO A 424 0 0.01 SITE 1 AC1 9 ALA A 106 THR A 107 PHE A 110 ARG A 192 SITE 2 AC1 9 GLY A 193 ILE A 194 LYS A 195 GLY A 196 SITE 3 AC1 9 PHE A 204 CRYST1 124.242 124.242 165.127 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008049 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008049 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006056 0.00000