HEADER IMMUNE SYSTEM 14-JAN-05 1YJG TITLE VARIABLE SMALL PROTEIN 1 OF BORRELIA TURICATAE (VSPA OR VSP1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SURFACE PROTEIN VSPA; COMPND 3 CHAIN: A, B, D, E; COMPND 4 FRAGMENT: VSPA CORE RESIDUES 45-202; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORRELIA TURICATAE; SOURCE 3 ORGANISM_TAXID: 142; SOURCE 4 GENE: VSPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET29B KEYWDS HELICAL BUNDLE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR W.R.ZUECKERT,B.H.YUNG,A.G.BARBOUR,C.L.LAWSON REVDAT 5 23-AUG-23 1YJG 1 REMARK REVDAT 4 13-JUL-11 1YJG 1 VERSN REVDAT 3 24-FEB-09 1YJG 1 VERSN REVDAT 2 27-JUN-06 1YJG 1 JRNL REVDAT 1 24-JAN-06 1YJG 0 JRNL AUTH C.L.LAWSON,B.H.YUNG,A.G.BARBOUR,W.R.ZUCKERT JRNL TITL CRYSTAL STRUCTURE OF NEUROTROPISM-ASSOCIATED VARIABLE JRNL TITL 2 SURFACE PROTEIN 1 (VSP1) OF BORRELIA TURICATAE. JRNL REF J.BACTERIOL. V. 188 4522 2006 JRNL REFN ISSN 0021-9193 JRNL PMID 16740958 JRNL DOI 10.1128/JB.00028-06 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.R.ZUECKERT,T.A.KERENTSEVA,C.L.LAWSON,A.G.BARBOUR REMARK 1 TITL STRUCTURAL CONSERVATION OF NEUROTROPISM-ASSOCIATED VSPA REMARK 1 TITL 2 WITHIN THE VARIABLE VSP-OSPC LIPOPROTEIN FAMILY REMARK 1 REF J.BIOL.CHEM. V. 276 457 2001 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 11018048 REMARK 1 DOI 10.1074/JBC.M008449200 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 25078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1329 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1587 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4508 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.21000 REMARK 3 B22 (A**2) : 2.03000 REMARK 3 B33 (A**2) : -2.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.82000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.413 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.264 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.190 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.700 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4520 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4326 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6087 ; 1.258 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10168 ; 0.752 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 622 ; 0.764 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 797 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4946 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 686 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1150 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4874 ; 0.207 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2658 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 202 ; 0.157 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.162 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.195 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.199 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3094 ; 1.920 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4930 ; 2.779 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1426 ; 2.065 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1157 ; 3.050 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B D E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 57 A 115 2 REMARK 3 1 B 57 B 115 2 REMARK 3 1 D 57 D 115 2 REMARK 3 1 E 57 E 115 2 REMARK 3 2 A 121 A 188 3 REMARK 3 2 B 121 B 188 3 REMARK 3 2 D 121 D 188 3 REMARK 3 2 E 121 E 188 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 754 ; 0.14 ; 0.20 REMARK 3 TIGHT POSITIONAL 1 B (A): 754 ; 0.19 ; 0.20 REMARK 3 TIGHT POSITIONAL 1 D (A): 754 ; 0.18 ; 0.20 REMARK 3 TIGHT POSITIONAL 1 E (A): 754 ; 0.16 ; 0.20 REMARK 3 MEDIUM POSITIONAL 1 A (A): 501 ; 0.27 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 501 ; 0.27 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 D (A): 501 ; 0.29 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 E (A): 501 ; 0.31 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 563 ; 0.40 ; 10.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 563 ; 0.41 ; 10.00 REMARK 3 LOOSE POSITIONAL 1 D (A): 563 ; 0.37 ; 10.00 REMARK 3 LOOSE POSITIONAL 1 E (A): 563 ; 0.45 ; 10.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 754 ; 3.13 ; 5.00 REMARK 3 TIGHT THERMAL 1 B (A**2): 754 ; 2.12 ; 5.00 REMARK 3 TIGHT THERMAL 1 D (A**2): 754 ; 2.28 ; 5.00 REMARK 3 TIGHT THERMAL 1 E (A**2): 754 ; 2.98 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 501 ; 3.79 ; 15.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 501 ; 2.62 ; 15.00 REMARK 3 MEDIUM THERMAL 1 D (A**2): 501 ; 3.02 ; 15.00 REMARK 3 MEDIUM THERMAL 1 E (A**2): 501 ; 3.61 ; 15.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 563 ; 4.96 ; 25.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 563 ; 3.66 ; 25.00 REMARK 3 LOOSE THERMAL 1 D (A**2): 563 ; 2.94 ; 25.00 REMARK 3 LOOSE THERMAL 1 E (A**2): 563 ; 4.54 ; 25.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7780 -3.1220 22.4000 REMARK 3 T TENSOR REMARK 3 T11: 0.2380 T22: 0.1060 REMARK 3 T33: 0.1552 T12: 0.0189 REMARK 3 T13: 0.0246 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.5465 L22: 0.5470 REMARK 3 L33: 1.3881 L12: 0.2201 REMARK 3 L13: 0.2450 L23: -0.6728 REMARK 3 S TENSOR REMARK 3 S11: 0.1119 S12: -0.0759 S13: -0.0312 REMARK 3 S21: -0.0717 S22: -0.1314 S23: -0.0149 REMARK 3 S31: -0.0029 S32: 0.0838 S33: 0.0195 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 45 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9070 3.3300 29.0320 REMARK 3 T TENSOR REMARK 3 T11: 0.2197 T22: 0.1530 REMARK 3 T33: 0.1887 T12: -0.0390 REMARK 3 T13: -0.0019 T23: 0.0602 REMARK 3 L TENSOR REMARK 3 L11: 1.8361 L22: 0.4400 REMARK 3 L33: 0.5166 L12: 0.5544 REMARK 3 L13: 1.3940 L23: 0.0326 REMARK 3 S TENSOR REMARK 3 S11: -0.0908 S12: -0.1938 S13: 0.2519 REMARK 3 S21: 0.0045 S22: -0.1738 S23: -0.1237 REMARK 3 S31: -0.1418 S32: 0.2140 S33: 0.2646 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 47 D 201 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6000 12.4050 -18.2450 REMARK 3 T TENSOR REMARK 3 T11: 0.2577 T22: 0.0645 REMARK 3 T33: 0.2004 T12: -0.0219 REMARK 3 T13: 0.0575 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 0.6536 L22: 1.6208 REMARK 3 L33: 1.2712 L12: 0.2413 REMARK 3 L13: -0.6666 L23: -1.1016 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.0297 S13: 0.0362 REMARK 3 S21: -0.0743 S22: -0.0799 S23: -0.1687 REMARK 3 S31: 0.0051 S32: 0.0669 S33: 0.0584 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 45 E 201 REMARK 3 ORIGIN FOR THE GROUP (A): 39.9500 5.1420 -20.2610 REMARK 3 T TENSOR REMARK 3 T11: 0.2361 T22: 0.0746 REMARK 3 T33: 0.2965 T12: -0.0544 REMARK 3 T13: 0.1247 T23: 0.0909 REMARK 3 L TENSOR REMARK 3 L11: 1.5119 L22: 1.1995 REMARK 3 L33: 0.4431 L12: -0.8688 REMARK 3 L13: 0.1046 L23: -0.1587 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: 0.2256 S13: 0.2063 REMARK 3 S21: -0.0790 S22: -0.0986 S23: -0.4136 REMARK 3 S31: 0.0381 S32: 0.1965 S33: 0.1002 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : SI MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26408 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 2.930 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 26.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.68 REMARK 200 R MERGE FOR SHELL (I) : 0.16600 REMARK 200 R SYM FOR SHELL (I) : 0.16100 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PARTIALLY REFINED MODEL FOR VSPA 34-214, DERIVED REMARK 200 BY MOLECULAR REPLACEMENT STARTING FROM BORRELIA BURGDORFERI OSPC, REMARK 200 STRAIN B31 (PDB ID 1GGQ) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 4000, 0.1 M LICL, AND REMARK 280 0.1 MM TAURINE, PH 4.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 87.92850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.10650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 87.92850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.10650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THIS PROTEIN WAS ORIGINALLY CALLED VARIABLE REMARK 400 MEMBRANE PROTEIN A, OR VMPA. IN 2000, WHEN REMARK 400 BORRELIA VMP GENES WERE RECLASSIFIED AS VSP REMARK 400 OR VLP GENES, THE PROTEIN NAME WAS REVISED REMARK 400 TO VARIABLE SMALL PROTEIN A (VSPA). IN 2002, REMARK 400 TO ADDRESS PROBLEMS RELATED TO ALPHABETICAL REMARK 400 NAMING OF MORE THAN ONE VSP GENE EXPRESSED REMARK 400 AT THE SAME EXPRESSION SITE, THE PROTEIN NAME REMARK 400 WAS FURTHER REVISED TO VARIABLE SMALL REMARK 400 PROTEIN 1 (VSP1). REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 202 REMARK 465 SER B 202 REMARK 465 THR D 45 REMARK 465 LYS D 46 REMARK 465 SER D 202 REMARK 465 SER E 202 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS D 56 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS D 56 CB LYS D 56 CG 0.184 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 50 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 162 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP E 50 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP E 60 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP E 162 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 87 81.78 -158.59 REMARK 500 ASP A 89 -163.37 59.86 REMARK 500 ALA A 200 21.82 -75.40 REMARK 500 ASP B 87 82.23 -167.99 REMARK 500 ASP B 89 -164.85 60.06 REMARK 500 SER B 119 -179.05 -67.07 REMARK 500 LYS B 169 48.43 -101.74 REMARK 500 ASP D 87 71.20 -168.01 REMARK 500 ALA D 88 155.08 -35.86 REMARK 500 ASP D 89 -162.97 49.88 REMARK 500 THR D 166 53.98 -91.66 REMARK 500 ASP E 87 79.68 -165.48 REMARK 500 ASP E 89 -172.65 58.88 REMARK 500 ASP E 165 109.20 -43.54 REMARK 500 LYS E 169 46.31 -96.57 REMARK 500 REMARK 500 REMARK: NULL DBREF 1YJG A 45 202 UNP O34000 O34000 45 202 DBREF 1YJG B 45 202 UNP O34000 O34000 45 202 DBREF 1YJG D 45 202 UNP O34000 O34000 45 202 DBREF 1YJG E 45 202 UNP O34000 O34000 45 202 SEQRES 1 A 158 THR LYS ASN ILE THR ASP ALA VAL ALA PHE ALA LYS SER SEQRES 2 A 158 VAL LYS ASP VAL HIS THR LEU VAL LYS SER ILE ASP GLU SEQRES 3 A 158 LEU ALA LYS ALA ILE GLY LYS LYS ILE GLY ALA ASN GLY SEQRES 4 A 158 LEU GLU THR ASP ALA ASP LYS ASN ALA LYS LEU ILE SER SEQRES 5 A 158 GLY ALA TYR SER VAL ILE SER ALA VAL ASP THR LYS LEU SEQRES 6 A 158 ALA SER LEU GLU LYS LYS VAL GLY ILE SER ASP ASP LEU SEQRES 7 A 158 LYS GLY LYS ILE THR THR VAL LYS ASN ALA SER THR SER SEQRES 8 A 158 PHE LEU THR LYS ALA LYS SER LYS THR ALA ASP LEU GLY SEQRES 9 A 158 LYS ASP ASP VAL LYS ASP ALA ASP ALA LYS THR ALA ILE SEQRES 10 A 158 ASP ILE ALA ASP THR GLY ALA LYS ASP LYS GLY ALA GLU SEQRES 11 A 158 GLU LEU ILE LYS LEU ASN THR ALA ILE ASP ALA LEU LEU SEQRES 12 A 158 THR SER ALA GLU ALA ALA VAL THR ALA ALA ILE ASN ALA SEQRES 13 A 158 LEU SER SEQRES 1 B 158 THR LYS ASN ILE THR ASP ALA VAL ALA PHE ALA LYS SER SEQRES 2 B 158 VAL LYS ASP VAL HIS THR LEU VAL LYS SER ILE ASP GLU SEQRES 3 B 158 LEU ALA LYS ALA ILE GLY LYS LYS ILE GLY ALA ASN GLY SEQRES 4 B 158 LEU GLU THR ASP ALA ASP LYS ASN ALA LYS LEU ILE SER SEQRES 5 B 158 GLY ALA TYR SER VAL ILE SER ALA VAL ASP THR LYS LEU SEQRES 6 B 158 ALA SER LEU GLU LYS LYS VAL GLY ILE SER ASP ASP LEU SEQRES 7 B 158 LYS GLY LYS ILE THR THR VAL LYS ASN ALA SER THR SER SEQRES 8 B 158 PHE LEU THR LYS ALA LYS SER LYS THR ALA ASP LEU GLY SEQRES 9 B 158 LYS ASP ASP VAL LYS ASP ALA ASP ALA LYS THR ALA ILE SEQRES 10 B 158 ASP ILE ALA ASP THR GLY ALA LYS ASP LYS GLY ALA GLU SEQRES 11 B 158 GLU LEU ILE LYS LEU ASN THR ALA ILE ASP ALA LEU LEU SEQRES 12 B 158 THR SER ALA GLU ALA ALA VAL THR ALA ALA ILE ASN ALA SEQRES 13 B 158 LEU SER SEQRES 1 D 158 THR LYS ASN ILE THR ASP ALA VAL ALA PHE ALA LYS SER SEQRES 2 D 158 VAL LYS ASP VAL HIS THR LEU VAL LYS SER ILE ASP GLU SEQRES 3 D 158 LEU ALA LYS ALA ILE GLY LYS LYS ILE GLY ALA ASN GLY SEQRES 4 D 158 LEU GLU THR ASP ALA ASP LYS ASN ALA LYS LEU ILE SER SEQRES 5 D 158 GLY ALA TYR SER VAL ILE SER ALA VAL ASP THR LYS LEU SEQRES 6 D 158 ALA SER LEU GLU LYS LYS VAL GLY ILE SER ASP ASP LEU SEQRES 7 D 158 LYS GLY LYS ILE THR THR VAL LYS ASN ALA SER THR SER SEQRES 8 D 158 PHE LEU THR LYS ALA LYS SER LYS THR ALA ASP LEU GLY SEQRES 9 D 158 LYS ASP ASP VAL LYS ASP ALA ASP ALA LYS THR ALA ILE SEQRES 10 D 158 ASP ILE ALA ASP THR GLY ALA LYS ASP LYS GLY ALA GLU SEQRES 11 D 158 GLU LEU ILE LYS LEU ASN THR ALA ILE ASP ALA LEU LEU SEQRES 12 D 158 THR SER ALA GLU ALA ALA VAL THR ALA ALA ILE ASN ALA SEQRES 13 D 158 LEU SER SEQRES 1 E 158 THR LYS ASN ILE THR ASP ALA VAL ALA PHE ALA LYS SER SEQRES 2 E 158 VAL LYS ASP VAL HIS THR LEU VAL LYS SER ILE ASP GLU SEQRES 3 E 158 LEU ALA LYS ALA ILE GLY LYS LYS ILE GLY ALA ASN GLY SEQRES 4 E 158 LEU GLU THR ASP ALA ASP LYS ASN ALA LYS LEU ILE SER SEQRES 5 E 158 GLY ALA TYR SER VAL ILE SER ALA VAL ASP THR LYS LEU SEQRES 6 E 158 ALA SER LEU GLU LYS LYS VAL GLY ILE SER ASP ASP LEU SEQRES 7 E 158 LYS GLY LYS ILE THR THR VAL LYS ASN ALA SER THR SER SEQRES 8 E 158 PHE LEU THR LYS ALA LYS SER LYS THR ALA ASP LEU GLY SEQRES 9 E 158 LYS ASP ASP VAL LYS ASP ALA ASP ALA LYS THR ALA ILE SEQRES 10 E 158 ASP ILE ALA ASP THR GLY ALA LYS ASP LYS GLY ALA GLU SEQRES 11 E 158 GLU LEU ILE LYS LEU ASN THR ALA ILE ASP ALA LEU LEU SEQRES 12 E 158 THR SER ALA GLU ALA ALA VAL THR ALA ALA ILE ASN ALA SEQRES 13 E 158 LEU SER FORMUL 5 HOH *216(H2 O) HELIX 1 1 THR A 45 LYS A 73 1 29 HELIX 2 2 ASN A 91 LYS A 114 1 24 HELIX 3 3 SER A 119 LYS A 143 1 25 HELIX 4 4 LYS A 143 GLY A 148 1 6 HELIX 5 5 LYS A 153 ASP A 162 1 10 HELIX 6 6 GLY A 172 ALA A 200 1 29 HELIX 7 7 LYS B 46 LYS B 73 1 28 HELIX 8 8 ASN B 91 LYS B 114 1 24 HELIX 9 9 SER B 119 LYS B 143 1 25 HELIX 10 10 LYS B 143 GLY B 148 1 6 HELIX 11 11 LYS B 153 ASP B 162 1 10 HELIX 12 12 GLY B 172 LEU B 201 1 30 HELIX 13 13 ASN D 47 ALA D 74 1 28 HELIX 14 14 ASN D 91 LYS D 114 1 24 HELIX 15 15 SER D 119 LYS D 143 1 25 HELIX 16 16 LYS D 143 GLY D 148 1 6 HELIX 17 17 LYS D 153 ASP D 162 1 10 HELIX 18 18 GLY D 172 ALA D 200 1 29 HELIX 19 19 THR E 45 LYS E 73 1 29 HELIX 20 20 ASN E 91 LYS E 114 1 24 HELIX 21 21 SER E 119 LYS E 143 1 25 HELIX 22 22 LYS E 143 GLY E 148 1 6 HELIX 23 23 LYS E 153 ASP E 162 1 10 HELIX 24 24 GLY E 172 ASN E 199 1 28 SHEET 1 A 2 LYS A 77 GLY A 80 0 SHEET 2 A 2 GLY A 83 THR A 86 -1 O GLY A 83 N GLY A 80 SHEET 1 B 2 LYS B 77 GLY B 80 0 SHEET 2 B 2 GLY B 83 THR B 86 -1 O GLU B 85 N LYS B 78 SHEET 1 C 2 LYS D 77 GLY D 80 0 SHEET 2 C 2 GLY D 83 THR D 86 -1 O GLU D 85 N LYS D 78 SHEET 1 D 2 LYS E 77 GLY E 80 0 SHEET 2 D 2 GLY E 83 THR E 86 -1 O GLY E 83 N GLY E 80 CRYST1 175.857 34.213 99.386 90.00 112.68 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005686 0.000000 0.002377 0.00000 SCALE2 0.000000 0.029229 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010905 0.00000