HEADER OXIDOREDUCTASE 14-JAN-05 1YJL TITLE REDUCED PEPTIDYLGLYCINE ALPHA-HYDROXYLATING MONOOXYGENASE IN A NEW TITLE 2 CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PEPTIDYLGLYCINE ALPHA-HYDROXYLATING MONOOXYGENASE (RESIDUES COMPND 5 50-355); COMPND 6 SYNONYM: PAM; COMPND 7 EC: 1.14.17.3; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PAM; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: DG44; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: VIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCIS KEYWDS MONOOXYGENASE, BIOACTIVE PEPTIDE ACTIVATION, COPPER, ASCORBATE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR X.SIEBERT,B.A.EIPPER,R.E.MAINS,S.T.PRIGGE,N.J.BLACKBURN,L.M.AMZEL REVDAT 4 23-AUG-23 1YJL 1 REMARK REVDAT 3 20-OCT-21 1YJL 1 SEQADV REVDAT 2 24-FEB-09 1YJL 1 VERSN REVDAT 1 15-NOV-05 1YJL 0 JRNL AUTH X.SIEBERT,B.A.EIPPER,R.E.MAINS,S.T.PRIGGE,N.J.BLACKBURN, JRNL AUTH 2 L.M.AMZEL JRNL TITL THE CATALYTIC COPPER OF PEPTIDYLGLYCINE ALPHA-HYDROXYLATING JRNL TITL 2 MONOOXYGENASE ALSO PLAYS A CRITICAL STRUCTURAL ROLE. JRNL REF BIOPHYS.J. V. 89 3312 2005 JRNL REFN ISSN 0006-3495 JRNL PMID 16100265 JRNL DOI 10.1529/BIOPHYSJ.105.066100 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 11141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 535 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 760 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.4060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2245 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.64000 REMARK 3 B22 (A**2) : 1.68000 REMARK 3 B33 (A**2) : -2.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.228 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.045 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2315 ; 0.021 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3153 ; 1.927 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 8.824 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;34.942 ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 361 ;19.179 ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.314 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.134 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1773 ; 0.008 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 883 ; 0.235 ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1520 ; 0.318 ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 103 ; 0.187 ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.270 ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.249 ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1463 ; 1.053 ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2324 ; 1.765 ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 985 ; 2.344 ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 829 ; 3.496 ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 354 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3120 7.2170 19.9140 REMARK 3 T TENSOR REMARK 3 T11: -0.1406 T22: -0.1084 REMARK 3 T33: -0.1147 T12: -0.0015 REMARK 3 T13: -0.0433 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 1.9339 L22: 1.2777 REMARK 3 L33: 5.7716 L12: -0.5358 REMARK 3 L13: -1.6069 L23: 0.5027 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: 0.1981 S13: -0.0723 REMARK 3 S21: -0.2431 S22: -0.0292 S23: 0.3358 REMARK 3 S31: -0.0564 S32: -0.6073 S33: -0.0019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031586. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA CCP4_3.2.5, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11174 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 65.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.44500 REMARK 200 R SYM FOR SHELL (I) : 0.44500 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1OPM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MAGNESIUM CHLORIDE, TRIS, PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.88200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.76300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.00950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.76300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.88200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.00950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 101 REMARK 465 SER A 102 REMARK 465 MET A 103 REMARK 465 ASP A 104 REMARK 465 GLY A 297 REMARK 465 GLU A 298 REMARK 465 GLY A 299 REMARK 465 ARG A 300 REMARK 465 THR A 301 REMARK 465 GLU A 302 REMARK 465 ALA A 303 REMARK 465 THR A 304 REMARK 465 HIS A 305 REMARK 465 ILE A 306 REMARK 465 GLY A 307 REMARK 465 GLY A 308 REMARK 465 THR A 309 REMARK 465 SER A 310 REMARK 465 SER A 311 REMARK 465 ASP A 312 REMARK 465 GLU A 313 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 265 O ILE A 352 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 177 CB SER A 177 OG 0.153 REMARK 500 SER A 177 CA SER A 177 C 0.164 REMARK 500 SER A 177 C SER A 177 O 0.270 REMARK 500 ALA A 178 C ALA A 178 O 0.141 REMARK 500 PHE A 179 CE1 PHE A 179 CZ 0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 77 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 85 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 127 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 SER A 177 CA - C - O ANGL. DEV. = 15.4 DEGREES REMARK 500 ASP A 181 CB - CG - OD2 ANGL. DEV. = 10.7 DEGREES REMARK 500 LEU A 193 CA - CB - CG ANGL. DEV. = 19.9 DEGREES REMARK 500 ASP A 282 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 287 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 51 103.45 -37.73 REMARK 500 ASP A 58 -143.16 -142.33 REMARK 500 PRO A 69 39.24 -72.12 REMARK 500 SER A 76 172.01 -56.04 REMARK 500 ASP A 77 -14.62 78.66 REMARK 500 GLU A 128 0.63 -68.83 REMARK 500 THR A 130 -67.81 -102.29 REMARK 500 ALA A 145 172.04 -58.48 REMARK 500 THR A 148 98.22 -45.48 REMARK 500 THR A 162 -53.87 77.57 REMARK 500 ASN A 182 63.25 179.12 REMARK 500 VAL A 210 -74.47 -94.22 REMARK 500 PRO A 216 -176.95 -61.33 REMARK 500 LYS A 219 -33.07 -139.29 REMARK 500 HIS A 244 -148.11 -115.05 REMARK 500 ARG A 256 -77.90 -102.19 REMARK 500 PRO A 271 70.05 -59.59 REMARK 500 GLN A 272 67.78 -39.95 REMARK 500 ALA A 339 67.41 -116.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 160 GLU A 161 149.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YJK RELATED DB: PDB REMARK 900 REDUCED PHM-M314I REMARK 900 RELATED ID: 1YIP RELATED DB: PDB REMARK 900 OXIDIZED PHM IN A NEW CRYSTAL FORM REMARK 900 RELATED ID: 1YI9 RELATED DB: PDB REMARK 900 OXIDIZED PHM-M314I REMARK 900 RELATED ID: 1PHM RELATED DB: PDB REMARK 900 OXIDIZED PHM REMARK 900 RELATED ID: 1OPM RELATED DB: PDB REMARK 900 OXIDIZED PHM WITH SUBSTRATE REMARK 900 RELATED ID: 3PHM RELATED DB: PDB REMARK 900 REDUCED PHM REMARK 900 RELATED ID: 1SDW RELATED DB: PDB REMARK 900 REDUCED PHM WITH SUBSTRATE AND DIOXYGEN DBREF 1YJL A 50 355 UNP P14925 AMD_RAT 50 355 SEQADV 1YJL ILE A 314 UNP P14925 MET 314 ENGINEERED MUTATION SEQRES 1 A 306 THR ILE GLY PRO VAL THR PRO LEU ASP ALA SER ASP PHE SEQRES 2 A 306 ALA LEU ASP ILE ARG MET PRO GLY VAL THR PRO LYS GLU SEQRES 3 A 306 SER ASP THR TYR PHE CYS MET SER MET ARG LEU PRO VAL SEQRES 4 A 306 ASP GLU GLU ALA PHE VAL ILE ASP PHE LYS PRO ARG ALA SEQRES 5 A 306 SER MET ASP THR VAL HIS HIS MET LEU LEU PHE GLY CYS SEQRES 6 A 306 ASN MET PRO SER SER THR GLY SER TYR TRP PHE CYS ASP SEQRES 7 A 306 GLU GLY THR CYS THR ASP LYS ALA ASN ILE LEU TYR ALA SEQRES 8 A 306 TRP ALA ARG ASN ALA PRO PRO THR ARG LEU PRO LYS GLY SEQRES 9 A 306 VAL GLY PHE ARG VAL GLY GLY GLU THR GLY SER LYS TYR SEQRES 10 A 306 PHE VAL LEU GLN VAL HIS TYR GLY ASP ILE SER ALA PHE SEQRES 11 A 306 ARG ASP ASN HIS LYS ASP CYS SER GLY VAL SER VAL HIS SEQRES 12 A 306 LEU THR ARG VAL PRO GLN PRO LEU ILE ALA GLY MET TYR SEQRES 13 A 306 LEU MET MET SER VAL ASP THR VAL ILE PRO PRO GLY GLU SEQRES 14 A 306 LYS VAL VAL ASN ALA ASP ILE SER CYS GLN TYR LYS MET SEQRES 15 A 306 TYR PRO MET HIS VAL PHE ALA TYR ARG VAL HIS THR HIS SEQRES 16 A 306 HIS LEU GLY LYS VAL VAL SER GLY TYR ARG VAL ARG ASN SEQRES 17 A 306 GLY GLN TRP THR LEU ILE GLY ARG GLN ASN PRO GLN LEU SEQRES 18 A 306 PRO GLN ALA PHE TYR PRO VAL GLU HIS PRO VAL ASP VAL SEQRES 19 A 306 THR PHE GLY ASP ILE LEU ALA ALA ARG CYS VAL PHE THR SEQRES 20 A 306 GLY GLU GLY ARG THR GLU ALA THR HIS ILE GLY GLY THR SEQRES 21 A 306 SER SER ASP GLU ILE CYS ASN LEU TYR ILE MET TYR TYR SEQRES 22 A 306 MET GLU ALA LYS TYR ALA LEU SER PHE MET THR CYS THR SEQRES 23 A 306 LYS ASN VAL ALA PRO ASP MET PHE ARG THR ILE PRO ALA SEQRES 24 A 306 GLU ALA ASN ILE PRO ILE PRO FORMUL 2 HOH *46(H2 O) HELIX 1 1 ASP A 127 GLY A 129 5 3 HELIX 2 2 LYS A 326 ALA A 328 5 3 HELIX 3 3 MET A 342 ILE A 346 5 5 HELIX 4 4 PRO A 347 ILE A 352 5 6 SHEET 1 A 9 VAL A 54 PRO A 56 0 SHEET 2 A 9 ASP A 61 ARG A 67 -1 O ALA A 63 N THR A 55 SHEET 3 A 9 GLY A 188 THR A 194 -1 O VAL A 189 N ILE A 66 SHEET 4 A 9 ALA A 92 ARG A 100 -1 N ARG A 100 O GLY A 188 SHEET 5 A 9 VAL A 154 VAL A 158 -1 O PHE A 156 N VAL A 94 SHEET 6 A 9 LEU A 200 SER A 209 1 O ALA A 202 N GLY A 155 SHEET 7 A 9 CYS A 315 GLU A 324 -1 O ILE A 319 N TYR A 205 SHEET 8 A 9 MET A 234 HIS A 242 -1 N ARG A 240 O TYR A 318 SHEET 9 A 9 TYR A 275 VAL A 283 -1 O VAL A 283 N MET A 234 SHEET 1 B 7 VAL A 54 PRO A 56 0 SHEET 2 B 7 ASP A 61 ARG A 67 -1 O ALA A 63 N THR A 55 SHEET 3 B 7 GLY A 188 THR A 194 -1 O VAL A 189 N ILE A 66 SHEET 4 B 7 ALA A 92 ARG A 100 -1 N ARG A 100 O GLY A 188 SHEET 5 B 7 VAL A 154 VAL A 158 -1 O PHE A 156 N VAL A 94 SHEET 6 B 7 LEU A 200 SER A 209 1 O ALA A 202 N GLY A 155 SHEET 7 B 7 PHE A 331 CYS A 334 1 O MET A 332 N MET A 204 SHEET 1 C 5 TRP A 124 PHE A 125 0 SHEET 2 C 5 TYR A 79 ARG A 85 -1 N CYS A 81 O TRP A 124 SHEET 3 C 5 TYR A 166 TYR A 173 -1 O VAL A 171 N PHE A 80 SHEET 4 C 5 VAL A 106 CYS A 114 -1 N LEU A 110 O GLN A 170 SHEET 5 C 5 ASN A 136 ALA A 142 -1 O LEU A 138 N LEU A 111 SHEET 1 D 4 VAL A 221 GLN A 228 0 SHEET 2 D 4 ILE A 288 PHE A 295 -1 O PHE A 295 N VAL A 221 SHEET 3 D 4 GLY A 247 VAL A 255 -1 N VAL A 255 O ILE A 288 SHEET 4 D 4 TRP A 260 GLN A 266 -1 O ILE A 263 N GLY A 252 SSBOND 1 CYS A 81 CYS A 126 1555 1555 2.05 SSBOND 2 CYS A 114 CYS A 131 1555 1555 2.05 SSBOND 3 CYS A 227 CYS A 334 1555 1555 2.04 SSBOND 4 CYS A 293 CYS A 315 1555 1555 1.98 CRYST1 59.764 66.019 69.526 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016700 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014400 0.00000