data_1YK4 # _entry.id 1YK4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YK4 pdb_00001yk4 10.2210/pdb1yk4/pdb RCSB RCSB031605 ? ? WWPDB D_1000031605 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1YK5 _pdbx_database_related.details 'the same protein, wild type' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YK4 _pdbx_database_status.recvd_initial_deposition_date 2005-01-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bonisch, H.' 1 'Schmidt, C.L.' 2 'Bianco, P.' 3 'Ladenstein, R.' 4 # _citation.id primary _citation.title 'Ultrahigh-resolution study on Pyrococcus abyssi rubredoxin. I. 0.69 A X-ray structure of mutant W4L/R5S.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 61 _citation.page_first 990 _citation.page_last 1004 _citation.year 2005 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15983423 _citation.pdbx_database_id_DOI 10.1107/S090744490501293X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bonisch, H.' 1 ? primary 'Schmidt, C.L.' 2 ? primary 'Bianco, P.' 3 ? primary 'Ladenstein, R.' 4 ? # _cell.entry_id 1YK4 _cell.length_a 25.14 _cell.length_b 39.50 _cell.length_c 45.07 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1YK4 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Rubredoxin 5772.364 1 ? 'W4L, R5S' ? ? 2 non-polymer syn 'FE (III) ION' 55.845 1 ? ? ? ? 3 water nat water 18.015 83 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Rd # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code AKLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE _entity_poly.pdbx_seq_one_letter_code_can AKLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LYS n 1 3 LEU n 1 4 SER n 1 5 CYS n 1 6 LYS n 1 7 ILE n 1 8 CYS n 1 9 GLY n 1 10 TYR n 1 11 ILE n 1 12 TYR n 1 13 ASP n 1 14 GLU n 1 15 ASP n 1 16 GLU n 1 17 GLY n 1 18 ASP n 1 19 PRO n 1 20 ASP n 1 21 ASN n 1 22 GLY n 1 23 ILE n 1 24 SER n 1 25 PRO n 1 26 GLY n 1 27 THR n 1 28 LYS n 1 29 PHE n 1 30 GLU n 1 31 ASP n 1 32 LEU n 1 33 PRO n 1 34 ASP n 1 35 ASP n 1 36 TRP n 1 37 VAL n 1 38 CYS n 1 39 PRO n 1 40 LEU n 1 41 CYS n 1 42 GLY n 1 43 ALA n 1 44 PRO n 1 45 LYS n 1 46 SER n 1 47 GLU n 1 48 PHE n 1 49 GLU n 1 50 ARG n 1 51 ILE n 1 52 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pyrococcus _entity_src_gen.pdbx_gene_src_gene rub _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus abyssi' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 29292 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RUBR_PYRAB _struct_ref.pdbx_db_accession Q9V099 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code AKWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YK4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 52 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9V099 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 53 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 53 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YK4 LEU A 3 ? UNP Q9V099 TRP 4 'engineered mutation' 4 1 1 1YK4 SER A 4 ? UNP Q9V099 ARG 5 'engineered mutation' 5 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FE non-polymer . 'FE (III) ION' ? 'Fe 3' 55.845 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1YK4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.936664 _exptl_crystal.density_percent_sol 36.488735 _exptl_crystal.description 'the file contains Friedel pairs' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'Sodium malonate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2004-05-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal focussing monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.7301 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7A' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline BW7A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.7301 # _reflns.entry_id 1YK4 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.0 _reflns.d_resolution_high 0.69 _reflns.d_resolution_low 20.00 _reflns.number_all ? _reflns.number_obs 132784 _reflns.percent_possible_obs 94.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.039 _reflns.pdbx_netI_over_sigmaI 13.7 _reflns.B_iso_Wilson_estimate 3.6 _reflns.pdbx_redundancy 7.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 0.69 _reflns_shell.d_res_low 0.70 _reflns_shell.percent_possible_all 90.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.22 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2695 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1YK4 _refine.ls_d_res_high 0.69 _refine.ls_d_res_low 20.00 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I -1 _refine.ls_number_reflns_all 132784 _refine.ls_number_reflns_obs 132784 _refine.ls_number_reflns_R_free 6646 _refine.ls_percent_reflns_obs 100 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1 _refine.ls_R_factor_R_work 0.1 _refine.ls_R_factor_R_free 0.108 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters 5141 _refine.ls_number_restraints 1619 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model anisotropic _refine.B_iso_mean 8.87 _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details 'the file contains Friedel pairs' _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1YK4 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.number_disordered_residues 25 _refine_analyze.occupancy_sum_non_hydrogen 487.02 _refine_analyze.occupancy_sum_hydrogen 367.02 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 919 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 94 _refine_hist.number_atoms_total 1014 _refine_hist.d_res_high 0.69 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.026 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.057 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.125 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.043 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.115 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.019 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1YK4 _pdbx_refine.R_factor_all_no_cutoff 0.1001 _pdbx_refine.R_factor_obs_no_cutoff 0.1003 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff 0.1083 _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.000 _pdbx_refine.R_factor_all_4sig_cutoff 0.0872 _pdbx_refine.R_factor_obs_4sig_cutoff 0.0874 _pdbx_refine.number_reflns_obs_4sig_cutoff 99101 _pdbx_refine.free_R_factor_4sig_cutoff 0.094 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 4925 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.0 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1YK4 _struct.title 'Ultra-high resolution structure of Pyrococcus abyssi rubredoxin W4L/R5S' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YK4 _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text 'ELECTRON TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 18 ? GLY A 22 ? ASP A 19 GLY A 23 5 ? 5 HELX_P HELX_P2 2 LYS A 28 ? LEU A 32 ? LYS A 29 LEU A 33 5 ? 5 HELX_P HELX_P3 3 PRO A 44 ? SER A 46 ? PRO A 45 SER A 47 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 5 SG ? ? ? 1_555 B FE . FE ? ? A CYS 6 A FE 54 1_555 ? ? ? ? ? ? ? 2.295 ? ? metalc2 metalc ? ? A CYS 8 SG ? ? ? 1_555 B FE . FE ? ? A CYS 9 A FE 54 1_555 ? ? ? ? ? ? ? 2.273 ? ? metalc3 metalc ? ? A CYS 38 SG ? ? ? 1_555 B FE . FE ? ? A CYS 39 A FE 54 1_555 ? ? ? ? ? ? ? 2.333 ? ? metalc4 metalc ? ? A CYS 41 SG ? ? ? 1_555 B FE . FE ? ? A CYS 42 A FE 54 1_555 ? ? ? ? ? ? ? 2.277 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 11 ? ASP A 13 ? ILE A 12 ASP A 14 A 2 LYS A 2 ? CYS A 5 ? LYS A 3 CYS A 6 A 3 PHE A 48 ? ILE A 51 ? PHE A 49 ILE A 52 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 12 ? O TYR A 13 N LEU A 3 ? N LEU A 4 A 2 3 N SER A 4 ? N SER A 5 O GLU A 49 ? O GLU A 50 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id FE _struct_site.pdbx_auth_seq_id 54 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE FE A 54' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 5 ? CYS A 6 . ? 1_555 ? 2 AC1 4 CYS A 8 ? CYS A 9 . ? 1_555 ? 3 AC1 4 CYS A 38 ? CYS A 39 . ? 1_555 ? 4 AC1 4 CYS A 41 ? CYS A 42 . ? 1_555 ? # _database_PDB_matrix.entry_id 1YK4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1YK4 _atom_sites.fract_transf_matrix[1][1] 0.039771 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025317 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022189 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C FE H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 2 2 ALA ALA A . n A 1 2 LYS 2 3 3 LYS LYS A . n A 1 3 LEU 3 4 4 LEU LEU A . n A 1 4 SER 4 5 5 SER SER A . n A 1 5 CYS 5 6 6 CYS CYS A . n A 1 6 LYS 6 7 7 LYS LYS A . n A 1 7 ILE 7 8 8 ILE ILE A . n A 1 8 CYS 8 9 9 CYS CYS A . n A 1 9 GLY 9 10 10 GLY GLY A . n A 1 10 TYR 10 11 11 TYR TYR A . n A 1 11 ILE 11 12 12 ILE ILE A . n A 1 12 TYR 12 13 13 TYR TYR A . n A 1 13 ASP 13 14 14 ASP ASP A . n A 1 14 GLU 14 15 15 GLU GLU A . n A 1 15 ASP 15 16 16 ASP ASP A . n A 1 16 GLU 16 17 17 GLU GLU A . n A 1 17 GLY 17 18 18 GLY GLY A . n A 1 18 ASP 18 19 19 ASP ASP A . n A 1 19 PRO 19 20 20 PRO PRO A . n A 1 20 ASP 20 21 21 ASP ASP A . n A 1 21 ASN 21 22 22 ASN ASN A . n A 1 22 GLY 22 23 23 GLY GLY A . n A 1 23 ILE 23 24 24 ILE ILE A . n A 1 24 SER 24 25 25 SER SER A . n A 1 25 PRO 25 26 26 PRO PRO A . n A 1 26 GLY 26 27 27 GLY GLY A . n A 1 27 THR 27 28 28 THR THR A . n A 1 28 LYS 28 29 29 LYS LYS A . n A 1 29 PHE 29 30 30 PHE PHE A . n A 1 30 GLU 30 31 31 GLU GLU A . n A 1 31 ASP 31 32 32 ASP ASP A . n A 1 32 LEU 32 33 33 LEU LEU A . n A 1 33 PRO 33 34 34 PRO PRO A . n A 1 34 ASP 34 35 35 ASP ASP A . n A 1 35 ASP 35 36 36 ASP ASP A . n A 1 36 TRP 36 37 37 TRP TRP A . n A 1 37 VAL 37 38 38 VAL VAL A . n A 1 38 CYS 38 39 39 CYS CYS A . n A 1 39 PRO 39 40 40 PRO PRO A . n A 1 40 LEU 40 41 41 LEU LEU A . n A 1 41 CYS 41 42 42 CYS CYS A . n A 1 42 GLY 42 43 43 GLY GLY A . n A 1 43 ALA 43 44 44 ALA ALA A . n A 1 44 PRO 44 45 45 PRO PRO A . n A 1 45 LYS 45 46 46 LYS LYS A . n A 1 46 SER 46 47 47 SER SER A . n A 1 47 GLU 47 48 48 GLU GLU A . n A 1 48 PHE 48 49 49 PHE PHE A . n A 1 49 GLU 49 50 50 GLU GLU A . n A 1 50 ARG 50 51 51 ARG ARG A . n A 1 51 ILE 51 52 52 ILE ILE A . n A 1 52 GLU 52 53 53 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE 1 54 54 FE FE A . C 3 HOH 1 55 55 HOH HOH A . C 3 HOH 2 56 56 HOH HOH A . C 3 HOH 3 57 57 HOH HOH A . C 3 HOH 4 58 58 HOH HOH A . C 3 HOH 5 59 59 HOH HOH A . C 3 HOH 6 60 60 HOH HOH A . C 3 HOH 7 61 61 HOH HOH A . C 3 HOH 8 62 62 HOH HOH A . C 3 HOH 9 63 63 HOH HOH A . C 3 HOH 10 64 64 HOH HOH A . C 3 HOH 11 65 65 HOH HOH A . C 3 HOH 12 66 66 HOH HOH A . C 3 HOH 13 67 67 HOH HOH A . C 3 HOH 14 68 68 HOH HOH A . C 3 HOH 15 69 69 HOH HOH A . C 3 HOH 16 70 70 HOH HOH A . C 3 HOH 17 71 71 HOH HOH A . C 3 HOH 18 72 72 HOH HOH A . C 3 HOH 19 73 73 HOH HOH A . C 3 HOH 20 74 74 HOH HOH A . C 3 HOH 21 75 75 HOH HOH A . C 3 HOH 22 76 76 HOH HOH A . C 3 HOH 23 77 77 HOH HOH A . C 3 HOH 24 78 78 HOH HOH A . C 3 HOH 25 79 79 HOH HOH A . C 3 HOH 26 80 80 HOH HOH A . C 3 HOH 27 81 81 HOH HOH A . C 3 HOH 28 82 82 HOH HOH A . C 3 HOH 29 83 83 HOH HOH A . C 3 HOH 30 84 84 HOH HOH A . C 3 HOH 31 85 85 HOH HOH A . C 3 HOH 32 86 86 HOH HOH A . C 3 HOH 33 87 87 HOH HOH A . C 3 HOH 34 88 88 HOH HOH A . C 3 HOH 35 89 89 HOH HOH A . C 3 HOH 36 90 90 HOH HOH A . C 3 HOH 37 91 91 HOH HOH A . C 3 HOH 38 92 92 HOH HOH A . C 3 HOH 39 93 93 HOH HOH A . C 3 HOH 40 94 94 HOH HOH A . C 3 HOH 41 95 95 HOH HOH A . C 3 HOH 42 96 96 HOH HOH A . C 3 HOH 43 97 97 HOH HOH A . C 3 HOH 44 98 98 HOH HOH A . C 3 HOH 45 99 99 HOH HOH A . C 3 HOH 46 100 100 HOH HOH A . C 3 HOH 47 101 101 HOH HOH A . C 3 HOH 48 102 102 HOH HOH A . C 3 HOH 49 103 103 HOH HOH A . C 3 HOH 50 104 104 HOH HOH A . C 3 HOH 51 105 105 HOH HOH A . C 3 HOH 52 106 106 HOH HOH A . C 3 HOH 53 107 107 HOH HOH A . C 3 HOH 54 108 108 HOH HOH A . C 3 HOH 55 109 109 HOH HOH A . C 3 HOH 56 110 110 HOH HOH A . C 3 HOH 57 111 111 HOH HOH A . C 3 HOH 58 112 112 HOH HOH A . C 3 HOH 59 113 113 HOH HOH A . C 3 HOH 60 114 114 HOH HOH A . C 3 HOH 61 115 115 HOH HOH A . C 3 HOH 62 116 116 HOH HOH A . C 3 HOH 63 117 117 HOH HOH A . C 3 HOH 64 118 118 HOH HOH A . C 3 HOH 65 119 119 HOH HOH A . C 3 HOH 66 120 120 HOH HOH A . C 3 HOH 67 121 121 HOH HOH A . C 3 HOH 68 122 122 HOH HOH A . C 3 HOH 69 123 123 HOH HOH A . C 3 HOH 70 124 124 HOH HOH A . C 3 HOH 71 125 125 HOH HOH A . C 3 HOH 72 126 126 HOH HOH A . C 3 HOH 73 127 127 HOH HOH A . C 3 HOH 74 128 128 HOH HOH A . C 3 HOH 75 129 129 HOH HOH A . C 3 HOH 76 130 130 HOH HOH A . C 3 HOH 77 131 131 HOH HOH A . C 3 HOH 78 132 132 HOH HOH A . C 3 HOH 79 133 133 HOH HOH A . C 3 HOH 80 134 134 HOH HOH A . C 3 HOH 81 135 135 HOH HOH A . C 3 HOH 82 136 136 HOH HOH A . C 3 HOH 83 137 137 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 5 ? A CYS 6 ? 1_555 FE ? B FE . ? A FE 54 ? 1_555 SG ? A CYS 8 ? A CYS 9 ? 1_555 117.5 ? 2 SG ? A CYS 5 ? A CYS 6 ? 1_555 FE ? B FE . ? A FE 54 ? 1_555 SG ? A CYS 38 ? A CYS 39 ? 1_555 110.8 ? 3 SG ? A CYS 8 ? A CYS 9 ? 1_555 FE ? B FE . ? A FE 54 ? 1_555 SG ? A CYS 38 ? A CYS 39 ? 1_555 99.4 ? 4 SG ? A CYS 5 ? A CYS 6 ? 1_555 FE ? B FE . ? A FE 54 ? 1_555 SG ? A CYS 41 ? A CYS 42 ? 1_555 103.4 ? 5 SG ? A CYS 8 ? A CYS 9 ? 1_555 FE ? B FE . ? A FE 54 ? 1_555 SG ? A CYS 41 ? A CYS 42 ? 1_555 114.0 ? 6 SG ? A CYS 38 ? A CYS 39 ? 1_555 FE ? B FE . ? A FE 54 ? 1_555 SG ? A CYS 41 ? A CYS 42 ? 1_555 112.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-01-17 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' diffrn_source 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 4 'Structure model' '_struct_ref_seq_dif.details' 17 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 SHELXD phasing . ? 3 SHELXL-97 refinement . ? 4 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 HH12 A ARG 51 ? B 1_555 O A HOH 70 ? ? 3_555 1.54 2 1 O A HOH 89 ? ? 1_555 O A HOH 137 ? ? 3_545 2.12 3 1 O A HOH 98 ? ? 1_555 O A HOH 112 ? ? 3_555 2.15 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 17 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OE1 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 17 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.158 _pdbx_validate_rmsd_bond.bond_target_value 1.252 _pdbx_validate_rmsd_bond.bond_deviation -0.094 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 35 ? A CG A ASP 35 ? A OD2 A ASP 35 ? A 110.51 118.30 -7.79 0.90 N 2 1 CB A ASP 36 ? B CG A ASP 36 ? B OD1 A ASP 36 ? B 112.39 118.30 -5.91 0.90 N 3 1 CB A ASP 36 ? B CG A ASP 36 ? B OD2 A ASP 36 ? B 124.78 118.30 6.48 0.90 N 4 1 CB A ARG 51 ? B CA A ARG 51 ? B C A ARG 51 ? ? 126.33 110.40 15.93 2.00 N 5 1 N A ARG 51 ? ? CA A ARG 51 ? B CB A ARG 51 ? B 95.47 110.60 -15.13 1.80 N 6 1 OE1 A GLU 53 ? ? CD A GLU 53 ? ? OE2 A GLU 53 ? ? 131.87 123.30 8.57 1.20 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 7 ? CE ? A LYS 6 CE 2 1 Y 0 A LYS 7 ? NZ ? A LYS 6 NZ # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FE (III) ION' FE 3 water HOH #