HEADER GENE REGULATION 18-JAN-05 1YKE TITLE STRUCTURE OF THE MEDIATOR MED7/MED21 SUBCOMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN MED7; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: RESIDUES 102-205; COMPND 5 SYNONYM: RNA POLYMERASE II TRANSCRIPTIONAL REGULATION MEDIATOR 7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA POLYMERASE II HOLOENZYME COMPONENT SRB7; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: MED21, RNAPII COMPLEX COMPONENT SRB7, SUPPRESSOR OF RNA COMPND 11 POLYMERASE B SRB7; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24D; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 4932; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET24D KEYWDS GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR S.BAUMLI,S.HOEPPNER,P.CRAMER REVDAT 4 13-MAR-24 1YKE 1 SEQADV REVDAT 3 24-FEB-09 1YKE 1 VERSN REVDAT 2 21-JUN-05 1YKE 1 JRNL REVDAT 1 22-FEB-05 1YKE 0 JRNL AUTH S.BAUMLI,S.HOEPPNER,P.CRAMER JRNL TITL A CONSERVED MEDIATOR HINGE REVEALED IN THE STRUCTURE OF THE JRNL TITL 2 MED7.MED21 (MED7.SRB7) HETERODIMER. JRNL REF J.BIOL.CHEM. V. 280 18171 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15710619 JRNL DOI 10.1074/JBC.M413466200 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.279 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 982 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3548 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.365 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YKE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0749 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20641 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CHLORIDE, PEG 6000, ETHANOL, B REMARK 280 -MERCAPTOETHANOL, EDTA, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.07850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.07850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.72800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.42950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.72800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.42950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.07850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.72800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.42950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.07850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.72800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.42950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE PRESUMED BIOLOGICAL UNIT CONSISTS OF MED7 AND MED21 AS REMARK 300 A HETERODIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 98 REMARK 465 ALA A 99 REMARK 465 SER A 100 REMARK 465 MET A 101 REMARK 465 LYS A 102 REMARK 465 LYS A 103 REMARK 465 SER A 104 REMARK 465 THR A 105 REMARK 465 GLU A 106 REMARK 465 ASN A 107 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 36 REMARK 465 VAL B 37 REMARK 465 ASN B 38 REMARK 465 GLU B 39 REMARK 465 PRO B 40 REMARK 465 GLN B 41 REMARK 465 MET B 42 REMARK 465 SER B 43 REMARK 465 ASP B 44 REMARK 465 LYS B 45 REMARK 465 HIS B 46 REMARK 465 ALA B 47 REMARK 465 ALA B 134 REMARK 465 ASN B 135 REMARK 465 SER B 136 REMARK 465 LYS B 137 REMARK 465 LYS B 138 REMARK 465 SER B 139 REMARK 465 THR B 140 REMARK 465 ALA B 141 REMARK 465 ALA B 142 REMARK 465 ALA B 143 REMARK 465 LEU B 144 REMARK 465 GLU B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 465 HIS B 148 REMARK 465 HIS B 149 REMARK 465 HIS B 150 REMARK 465 HIS B 151 REMARK 465 MET C 98 REMARK 465 ALA C 99 REMARK 465 SER C 100 REMARK 465 MET C 101 REMARK 465 LYS C 102 REMARK 465 LYS C 103 REMARK 465 SER C 104 REMARK 465 THR C 105 REMARK 465 GLU C 106 REMARK 465 ASN C 107 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ARG D 34 REMARK 465 LEU D 35 REMARK 465 THR D 36 REMARK 465 VAL D 37 REMARK 465 ASN D 38 REMARK 465 GLU D 39 REMARK 465 PRO D 40 REMARK 465 GLN D 41 REMARK 465 MET D 42 REMARK 465 SER D 43 REMARK 465 ASP D 44 REMARK 465 LYS D 45 REMARK 465 HIS D 46 REMARK 465 ALA D 47 REMARK 465 THR D 48 REMARK 465 ASP D 131 REMARK 465 GLY D 132 REMARK 465 ILE D 133 REMARK 465 ALA D 134 REMARK 465 ASN D 135 REMARK 465 SER D 136 REMARK 465 LYS D 137 REMARK 465 LYS D 138 REMARK 465 SER D 139 REMARK 465 THR D 140 REMARK 465 ALA D 141 REMARK 465 ALA D 142 REMARK 465 ALA D 143 REMARK 465 LEU D 144 REMARK 465 GLU D 145 REMARK 465 HIS D 146 REMARK 465 HIS D 147 REMARK 465 HIS D 148 REMARK 465 HIS D 149 REMARK 465 HIS D 150 REMARK 465 HIS D 151 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 152 NH1 ARG A 152 4555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 141 C - N - CA ANGL. DEV. = 11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 111 116.69 -24.14 REMARK 500 LEU A 161 -72.32 -70.98 REMARK 500 ARG B 4 -56.22 -139.44 REMARK 500 THR B 22 -64.82 -102.71 REMARK 500 ASN B 29 36.01 -143.86 REMARK 500 PRO B 52 -10.00 -58.29 REMARK 500 SER C 109 23.69 -64.85 REMARK 500 LEU C 133 17.71 -68.14 REMARK 500 PRO C 141 -33.44 -24.81 REMARK 500 TYR C 144 -27.97 -38.21 REMARK 500 ARG C 190 -13.14 -47.83 REMARK 500 GLN C 194 -73.23 -57.54 REMARK 500 VAL C 195 -40.88 -29.70 REMARK 500 LYS C 202 -19.05 -42.86 REMARK 500 THR C 204 -60.15 -121.44 REMARK 500 ARG D 4 -51.37 -170.35 REMARK 500 ASP D 27 -55.63 -152.60 REMARK 500 HIS D 30 74.86 58.52 REMARK 500 PHE D 32 -76.84 -52.15 REMARK 500 PRO D 51 150.36 -41.36 REMARK 500 PHE D 55 -82.67 -64.20 REMARK 500 THR D 58 -33.03 -151.78 REMARK 500 ARG D 92 31.28 -82.14 REMARK 500 MET D 96 16.11 -53.93 REMARK 500 LEU D 97 -59.98 -128.27 REMARK 500 LYS D 99 -81.82 -64.25 REMARK 500 LYS D 100 -34.58 -29.54 REMARK 500 ASP D 106 26.26 -77.67 REMARK 500 GLU D 107 -15.80 -155.00 REMARK 500 GLU D 110 -71.04 -37.22 REMARK 500 PHE D 129 37.91 -65.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YKH RELATED DB: PDB REMARK 900 THE SAME PROTEIN INCLUDING L5M/L119M AND L125M MUTATIONS DBREF 1YKE A 102 205 UNP Q08278 MED7_YEAST 102 205 DBREF 1YKE B 1 140 UNP P47822 SRB7_YEAST 1 140 DBREF 1YKE C 102 205 UNP Q08278 MED7_YEAST 102 205 DBREF 1YKE D 1 140 UNP P47822 SRB7_YEAST 1 140 SEQADV 1YKE MET A 98 UNP Q08278 CLONING ARTIFACT SEQADV 1YKE ALA A 99 UNP Q08278 CLONING ARTIFACT SEQADV 1YKE SER A 100 UNP Q08278 CLONING ARTIFACT SEQADV 1YKE MET A 101 UNP Q08278 CLONING ARTIFACT SEQADV 1YKE ALA B 141 UNP P47822 EXPRESSION TAG SEQADV 1YKE ALA B 142 UNP P47822 EXPRESSION TAG SEQADV 1YKE ALA B 143 UNP P47822 EXPRESSION TAG SEQADV 1YKE LEU B 144 UNP P47822 EXPRESSION TAG SEQADV 1YKE GLU B 145 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS B 146 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS B 147 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS B 148 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS B 149 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS B 150 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS B 151 UNP P47822 EXPRESSION TAG SEQADV 1YKE MET C 98 UNP Q08278 CLONING ARTIFACT SEQADV 1YKE ALA C 99 UNP Q08278 CLONING ARTIFACT SEQADV 1YKE SER C 100 UNP Q08278 CLONING ARTIFACT SEQADV 1YKE MET C 101 UNP Q08278 CLONING ARTIFACT SEQADV 1YKE ALA D 141 UNP P47822 EXPRESSION TAG SEQADV 1YKE ALA D 142 UNP P47822 EXPRESSION TAG SEQADV 1YKE ALA D 143 UNP P47822 EXPRESSION TAG SEQADV 1YKE LEU D 144 UNP P47822 EXPRESSION TAG SEQADV 1YKE GLU D 145 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS D 146 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS D 147 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS D 148 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS D 149 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS D 150 UNP P47822 EXPRESSION TAG SEQADV 1YKE HIS D 151 UNP P47822 EXPRESSION TAG SEQRES 1 A 108 MET ALA SER MET LYS LYS SER THR GLU ASN GLU SER THR SEQRES 2 A 108 ASN TYR GLN TYR LYS ILE GLN GLU LEU ARG LYS LEU LEU SEQRES 3 A 108 LYS SER LEU LEU LEU ASN TYR LEU GLU LEU ILE GLY VAL SEQRES 4 A 108 LEU SER ILE ASN PRO ASP MET TYR GLU ARG LYS VAL GLU SEQRES 5 A 108 ASN ILE ARG THR ILE LEU VAL ASN ILE HIS HIS LEU LEU SEQRES 6 A 108 ASN GLU TYR ARG PRO HIS GLN SER ARG GLU SER LEU ILE SEQRES 7 A 108 MET LEU LEU GLU GLU GLN LEU GLU TYR LYS ARG GLY GLU SEQRES 8 A 108 ILE ARG GLU ILE GLU GLN VAL CYS LYS GLN VAL HIS ASP SEQRES 9 A 108 LYS LEU THR SER SEQRES 1 B 151 MET THR ASP ARG LEU THR GLN LEU GLN ILE CYS LEU ASP SEQRES 2 B 151 GLN MET THR GLU GLN PHE CYS ALA THR LEU ASN TYR ILE SEQRES 3 B 151 ASP LYS ASN HIS GLY PHE GLU ARG LEU THR VAL ASN GLU SEQRES 4 B 151 PRO GLN MET SER ASP LYS HIS ALA THR VAL VAL PRO PRO SEQRES 5 B 151 GLU GLU PHE SER ASN THR ILE ASP GLU LEU SER THR ASP SEQRES 6 B 151 ILE ILE LEU LYS THR ARG GLN ILE ASN LYS LEU ILE ASP SEQRES 7 B 151 SER LEU PRO GLY VAL ASP VAL SER ALA GLU GLU GLN LEU SEQRES 8 B 151 ARG LYS ILE ASP MET LEU GLN LYS LYS LEU VAL GLU VAL SEQRES 9 B 151 GLU ASP GLU LYS ILE GLU ALA ILE LYS LYS LYS GLU LYS SEQRES 10 B 151 LEU LEU ARG HIS VAL ASP SER LEU ILE GLU ASP PHE VAL SEQRES 11 B 151 ASP GLY ILE ALA ASN SER LYS LYS SER THR ALA ALA ALA SEQRES 12 B 151 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 108 MET ALA SER MET LYS LYS SER THR GLU ASN GLU SER THR SEQRES 2 C 108 ASN TYR GLN TYR LYS ILE GLN GLU LEU ARG LYS LEU LEU SEQRES 3 C 108 LYS SER LEU LEU LEU ASN TYR LEU GLU LEU ILE GLY VAL SEQRES 4 C 108 LEU SER ILE ASN PRO ASP MET TYR GLU ARG LYS VAL GLU SEQRES 5 C 108 ASN ILE ARG THR ILE LEU VAL ASN ILE HIS HIS LEU LEU SEQRES 6 C 108 ASN GLU TYR ARG PRO HIS GLN SER ARG GLU SER LEU ILE SEQRES 7 C 108 MET LEU LEU GLU GLU GLN LEU GLU TYR LYS ARG GLY GLU SEQRES 8 C 108 ILE ARG GLU ILE GLU GLN VAL CYS LYS GLN VAL HIS ASP SEQRES 9 C 108 LYS LEU THR SER SEQRES 1 D 151 MET THR ASP ARG LEU THR GLN LEU GLN ILE CYS LEU ASP SEQRES 2 D 151 GLN MET THR GLU GLN PHE CYS ALA THR LEU ASN TYR ILE SEQRES 3 D 151 ASP LYS ASN HIS GLY PHE GLU ARG LEU THR VAL ASN GLU SEQRES 4 D 151 PRO GLN MET SER ASP LYS HIS ALA THR VAL VAL PRO PRO SEQRES 5 D 151 GLU GLU PHE SER ASN THR ILE ASP GLU LEU SER THR ASP SEQRES 6 D 151 ILE ILE LEU LYS THR ARG GLN ILE ASN LYS LEU ILE ASP SEQRES 7 D 151 SER LEU PRO GLY VAL ASP VAL SER ALA GLU GLU GLN LEU SEQRES 8 D 151 ARG LYS ILE ASP MET LEU GLN LYS LYS LEU VAL GLU VAL SEQRES 9 D 151 GLU ASP GLU LYS ILE GLU ALA ILE LYS LYS LYS GLU LYS SEQRES 10 D 151 LEU LEU ARG HIS VAL ASP SER LEU ILE GLU ASP PHE VAL SEQRES 11 D 151 ASP GLY ILE ALA ASN SER LYS LYS SER THR ALA ALA ALA SEQRES 12 D 151 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ASN A 111 ILE A 134 1 24 HELIX 2 2 ASN A 140 TYR A 165 1 26 HELIX 3 3 TYR A 165 THR A 204 1 40 HELIX 4 4 ARG B 4 PHE B 19 1 16 HELIX 5 5 THR B 22 ASN B 29 1 8 HELIX 6 6 HIS B 30 LEU B 35 5 6 HELIX 7 7 PRO B 51 LEU B 80 1 30 HELIX 8 8 SER B 86 ASP B 128 1 43 HELIX 9 9 ASN C 111 LEU C 133 1 23 HELIX 10 10 MET C 143 LEU C 162 1 20 HELIX 11 11 TYR C 165 LEU C 203 1 39 HELIX 12 12 ARG D 4 ILE D 26 1 23 HELIX 13 13 PHE D 55 LEU D 80 1 26 HELIX 14 14 SER D 86 PHE D 129 1 44 CRYST1 121.456 128.859 170.157 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008233 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005877 0.00000