HEADER LYASE 19-JAN-05 1YLH TITLE CRYSTAL STRUCTURE OF PHOSPHOENOLPYRUVATE CARBOXYKINASE FROM TITLE 2 ACTINOBACCILUS SUCCINOGENES IN COMPLEX WITH MANGANESE AND PYRUVATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE CARBOXYKINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.1.49; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINOBACILLUS SUCCINOGENES; SOURCE 3 ORGANISM_TAXID: 67854; SOURCE 4 GENE: PCKA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: PB25; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PPROEX-1 (INVITROGEN); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PASPCK KEYWDS PHOSPHOENOLPYRUVATE CARBOXYKINASE, DISULPHIDE BOND, BOUND SULFHYDRL KEYWDS 2 REDUCING AGENT, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.A.LEDUC,L.PRASAD,M.LAIVENIEKS,J.G.ZEIKUS,L.T.DELBAERE REVDAT 4 15-NOV-23 1YLH 1 ATOM REVDAT 3 23-AUG-23 1YLH 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1YLH 1 VERSN REVDAT 1 28-JUN-05 1YLH 0 JRNL AUTH Y.A.LEDUC,L.PRASAD,M.LAIVENIEKS,J.G.ZEIKUS,L.T.DELBAERE JRNL TITL STRUCTURE OF PEP CARBOXYKINASE FROM THE SUCCINATE-PRODUCING JRNL TITL 2 ACTINOBACILLUS SUCCINOGENES: A NEW CONSERVED ACTIVE-SITE JRNL TITL 3 MOTIF. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 903 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 15983413 JRNL DOI 10.1107/S0907444905008723 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 321402.720 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 57207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.600 REMARK 3 FREE R VALUE TEST SET COUNT : 3751 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8365 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 608 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4032 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.62000 REMARK 3 B22 (A**2) : 5.10000 REMARK 3 B33 (A**2) : -2.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.07 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.11 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.930 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.320 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.880 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.170 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.130 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 46.07 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : LIGAND.PAR REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : LIGAND.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YLH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031653. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9984 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58868 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26900 REMARK 200 R SYM FOR SHELL (I) : 0.26900 REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ID 1YGG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, NA-FORMATE, TRIS-HCL, MES REMARK 280 BUFFER, DTT, EDTA, PEP, MGCL2, MNCL2, PH 8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.54450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 ASP A -12 REMARK 465 TYR A -11 REMARK 465 ASP A -10 REMARK 465 ILE A -9 REMARK 465 PRO A -8 REMARK 465 THR A -7 REMARK 465 THR A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 465 TYR A -2 REMARK 465 PHE A -1 REMARK 465 GLN A 0 REMARK 465 GLY A 1 REMARK 465 MET A 2 REMARK 465 THR A 3 REMARK 465 LYS A 390 REMARK 465 LEU A 391 REMARK 465 ALA A 392 REMARK 465 GLY A 393 REMARK 465 THR A 394 REMARK 465 GLU A 395 REMARK 465 ARG A 396 REMARK 465 GLY A 397 REMARK 465 VAL A 398 REMARK 465 THR A 399 REMARK 465 GLU A 400 REMARK 465 ALA A 540 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 GLN A 294 CG CD OE1 NE2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 ASN A 296 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 74 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 21 -143.40 -93.36 REMARK 500 ASP A 269 -37.77 -137.97 REMARK 500 ASP A 274 -160.69 -113.15 REMARK 500 ASP A 307 -15.73 98.13 REMARK 500 ASN A 331 47.14 -88.72 REMARK 500 ILE A 477 -56.31 70.97 REMARK 500 LYS A 503 0.36 -59.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 560 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 213 NZ REMARK 620 2 HIS A 232 NE2 88.0 REMARK 620 3 ASP A 269 OD1 120.3 83.7 REMARK 620 4 ASP A 269 OD2 72.8 104.0 52.8 REMARK 620 5 HOH A 753 O 87.7 87.8 150.2 156.6 REMARK 620 6 HOH A 863 O 165.7 87.2 72.5 121.5 78.6 REMARK 620 7 HOH A 864 O 98.0 171.4 98.4 83.7 86.4 85.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 560 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 921 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 922 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DT3 A 592 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 593 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 594 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR A 931 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YGG RELATED DB: PDB REMARK 900 NATIVE STRUCTURE REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES ARE NUMBERED TO MATCH E. COLI PCK. DBREF 1YLH A 2 540 UNP Q6W6X5 Q6W6X5_ACTSC 1 538 SEQADV 1YLH MET A -20 UNP Q6W6X5 CLONING ARTIFACT SEQADV 1YLH GLY A -19 UNP Q6W6X5 CLONING ARTIFACT SEQADV 1YLH HIS A -18 UNP Q6W6X5 EXPRESSION TAG SEQADV 1YLH HIS A -17 UNP Q6W6X5 EXPRESSION TAG SEQADV 1YLH HIS A -16 UNP Q6W6X5 EXPRESSION TAG SEQADV 1YLH HIS A -15 UNP Q6W6X5 EXPRESSION TAG SEQADV 1YLH HIS A -14 UNP Q6W6X5 EXPRESSION TAG SEQADV 1YLH HIS A -13 UNP Q6W6X5 EXPRESSION TAG SEQADV 1YLH ASP A -12 UNP Q6W6X5 CLONING ARTIFACT SEQADV 1YLH TYR A -11 UNP Q6W6X5 CLONING ARTIFACT SEQADV 1YLH ASP A -10 UNP Q6W6X5 CLONING ARTIFACT SEQADV 1YLH ILE A -9 UNP Q6W6X5 CLONING ARTIFACT SEQADV 1YLH PRO A -8 UNP Q6W6X5 CLONING ARTIFACT SEQADV 1YLH THR A -7 UNP Q6W6X5 CLONING ARTIFACT SEQADV 1YLH THR A -6 UNP Q6W6X5 CLONING ARTIFACT SEQADV 1YLH GLU A -5 UNP Q6W6X5 CLONING ARTIFACT SEQADV 1YLH ASN A -4 UNP Q6W6X5 CLONING ARTIFACT SEQADV 1YLH LEU A -3 UNP Q6W6X5 CLONING ARTIFACT SEQADV 1YLH TYR A -2 UNP Q6W6X5 CLONING ARTIFACT SEQADV 1YLH PHE A -1 UNP Q6W6X5 CLONING ARTIFACT SEQADV 1YLH GLN A 0 UNP Q6W6X5 CLONING ARTIFACT SEQADV 1YLH GLY A 1 UNP Q6W6X5 CLONING ARTIFACT SEQRES 1 A 560 MET GLY HIS HIS HIS HIS HIS HIS ASP TYR ASP ILE PRO SEQRES 2 A 560 THR THR GLU ASN LEU TYR PHE GLN GLY MET THR ASP LEU SEQRES 3 A 560 ASN LYS LEU VAL LYS GLU LEU ASN ASP LEU GLY LEU THR SEQRES 4 A 560 ASP VAL LYS GLU ILE VAL TYR ASN PRO SER TYR GLU GLN SEQRES 5 A 560 LEU PHE GLU GLU GLU THR LYS PRO GLY LEU GLU GLY PHE SEQRES 6 A 560 ASP LYS GLY THR LEU THR THR LEU GLY ALA VAL ALA VAL SEQRES 7 A 560 ASP THR GLY ILE PHE THR GLY ARG SER PRO LYS ASP LYS SEQRES 8 A 560 TYR ILE VAL CYS ASP GLU THR THR LYS ASP THR VAL TRP SEQRES 9 A 560 TRP ASN SER GLU ALA ALA LYS ASN ASP ASN LYS PRO MET SEQRES 10 A 560 THR GLN GLU THR TRP LYS SER LEU ARG GLU LEU VAL ALA SEQRES 11 A 560 LYS GLN LEU SER GLY LYS ARG LEU PHE VAL VAL GLU GLY SEQRES 12 A 560 TYR CYS GLY ALA SER GLU LYS HIS ARG ILE GLY VAL ARG SEQRES 13 A 560 MET VAL THR GLU VAL ALA TRP GLN ALA HIS PHE VAL LYS SEQRES 14 A 560 ASN MET PHE ILE ARG PRO THR ASP GLU GLU LEU LYS ASN SEQRES 15 A 560 PHE LYS ALA ASP PHE THR VAL LEU ASN GLY ALA LYS CYS SEQRES 16 A 560 THR ASN PRO ASN TRP LYS GLU GLN GLY LEU ASN SER GLU SEQRES 17 A 560 ASN PHE VAL ALA PHE ASN ILE THR GLU GLY ILE GLN LEU SEQRES 18 A 560 ILE GLY GLY THR TRP TYR GLY GLY GLU MET LYS LYS GLY SEQRES 19 A 560 MET PHE SER MET MET ASN TYR PHE LEU PRO LEU LYS GLY SEQRES 20 A 560 VAL ALA SER MET HIS CYS SER ALA ASN VAL GLY LYS ASP SEQRES 21 A 560 GLY ASP VAL ALA ILE PHE PHE GLY LEU SER GLY THR GLY SEQRES 22 A 560 LYS THR THR LEU SER THR ASP PRO LYS ARG GLN LEU ILE SEQRES 23 A 560 GLY ASP ASP GLU HIS GLY TRP ASP GLU SER GLY VAL PHE SEQRES 24 A 560 ASN PHE GLU GLY GLY CYS TYR ALA LYS THR ILE ASN LEU SEQRES 25 A 560 SER GLN GLU ASN GLU PRO ASP ILE TYR GLY ALA ILE ARG SEQRES 26 A 560 ARG ASP ALA LEU LEU GLU ASN VAL VAL VAL ARG ALA ASP SEQRES 27 A 560 GLY SER VAL ASP PHE ASP ASP GLY SER LYS THR GLU ASN SEQRES 28 A 560 THR ARG VAL SER TYR PRO ILE TYR HIS ILE ASP ASN ILE SEQRES 29 A 560 VAL ARG PRO VAL SER LYS ALA GLY HIS ALA THR LYS VAL SEQRES 30 A 560 ILE PHE LEU THR ALA ASP ALA PHE GLY VAL LEU PRO PRO SEQRES 31 A 560 VAL SER LYS LEU THR PRO GLU GLN THR GLU TYR TYR PHE SEQRES 32 A 560 LEU SER GLY PHE THR ALA LYS LEU ALA GLY THR GLU ARG SEQRES 33 A 560 GLY VAL THR GLU PRO THR PRO THR PHE SER ALA CYS PHE SEQRES 34 A 560 GLY ALA ALA PHE LEU SER LEU HIS PRO ILE GLN TYR ALA SEQRES 35 A 560 ASP VAL LEU VAL GLU ARG MET LYS ALA SER GLY ALA GLU SEQRES 36 A 560 ALA TYR LEU VAL ASN THR GLY TRP ASN GLY THR GLY LYS SEQRES 37 A 560 ARG ILE SER ILE LYS ASP THR ARG GLY ILE ILE ASP ALA SEQRES 38 A 560 ILE LEU ASP GLY SER ILE GLU LYS ALA GLU MET GLY GLU SEQRES 39 A 560 LEU PRO ILE PHE ASN LEU ALA ILE PRO LYS ALA LEU PRO SEQRES 40 A 560 GLY VAL ASP PRO ALA ILE LEU ASP PRO ARG ASP THR TYR SEQRES 41 A 560 ALA ASP LYS ALA GLN TRP GLN VAL LYS ALA GLU ASP LEU SEQRES 42 A 560 ALA ASN ARG PHE VAL LYS ASN PHE VAL LYS TYR THR ALA SEQRES 43 A 560 ASN PRO GLU ALA ALA LYS LEU VAL GLY ALA GLY PRO LYS SEQRES 44 A 560 ALA HET MN A 560 1 HET PO4 A 921 5 HET PO4 A 922 5 HET DT3 A 592 11 HET BME A 593 4 HET BME A 594 4 HET PYR A 931 6 HET FMT A 900 3 HET FMT A 901 3 HET FMT A 902 3 HETNAM MN MANGANESE (II) ION HETNAM PO4 PHOSPHATE ION HETNAM DT3 (2S,3S)-2,3-DIHYDROXY-4-SULFANYLBUTANE-1-SULFONATE HETNAM BME BETA-MERCAPTOETHANOL HETNAM PYR PYRUVIC ACID HETNAM FMT FORMIC ACID FORMUL 2 MN MN 2+ FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 DT3 C4 H9 O5 S2 1- FORMUL 6 BME 2(C2 H6 O S) FORMUL 8 PYR C3 H4 O3 FORMUL 9 FMT 3(C H2 O2) FORMUL 12 HOH *197(H2 O) HELIX 1 1 ASP A 4 VAL A 9 1 6 HELIX 2 2 GLU A 11 GLY A 16 5 6 HELIX 3 3 SER A 28 LYS A 38 1 11 HELIX 4 4 SER A 66 LYS A 68 5 3 HELIX 5 5 THR A 98 LEU A 113 1 16 HELIX 6 6 VAL A 141 PHE A 152 1 12 HELIX 7 7 GLY A 208 LYS A 226 1 19 HELIX 8 8 GLY A 253 SER A 258 1 6 HELIX 9 9 GLU A 297 ILE A 304 1 8 HELIX 10 10 TYR A 339 ILE A 341 5 3 HELIX 11 11 THR A 375 GLY A 386 1 12 HELIX 12 12 ALA A 407 LEU A 414 5 8 HELIX 13 13 HIS A 417 GLY A 433 1 17 HELIX 14 14 SER A 451 GLY A 465 1 15 HELIX 15 15 SER A 466 ALA A 470 5 5 HELIX 16 16 ASP A 495 TYR A 500 5 6 HELIX 17 17 ASP A 502 VAL A 522 1 21 HELIX 18 18 LYS A 523 ALA A 526 5 4 HELIX 19 19 ASN A 527 LYS A 532 1 6 HELIX 20 20 LEU A 533 GLY A 537 5 5 SHEET 1 A 8 ILE A 23 TYR A 25 0 SHEET 2 A 8 LEU A 118 CYS A 125 1 O LEU A 118 N VAL A 24 SHEET 3 A 8 ILE A 133 THR A 139 -1 O THR A 139 N PHE A 119 SHEET 4 A 8 PHE A 167 GLY A 172 1 O VAL A 169 N VAL A 138 SHEET 5 A 8 ILE A 199 GLY A 203 1 O GLN A 200 N LEU A 170 SHEET 6 A 8 PHE A 190 ASN A 194 -1 N PHE A 190 O GLY A 203 SHEET 7 A 8 LYS A 70 VAL A 73 1 N VAL A 73 O PHE A 193 SHEET 8 A 8 LYS A 95 MET A 97 1 O LYS A 95 N ILE A 72 SHEET 1 B 4 VAL A 55 VAL A 57 0 SHEET 2 B 4 LEU A 309 GLU A 311 1 O LEU A 310 N VAL A 57 SHEET 3 B 4 ARG A 333 PRO A 337 -1 O ARG A 333 N GLU A 311 SHEET 4 B 4 GLY A 284 LYS A 288 -1 N CYS A 285 O TYR A 336 SHEET 1 C 3 ALA A 229 HIS A 232 0 SHEET 2 C 3 GLU A 270 TRP A 273 -1 O HIS A 271 N MET A 231 SHEET 3 C 3 VAL A 278 ASN A 280 -1 O PHE A 279 N GLY A 272 SHEET 1 D 6 ARG A 263 GLY A 267 0 SHEET 2 D 6 SER A 234 GLY A 238 -1 N ALA A 235 O GLY A 267 SHEET 3 D 6 VAL A 243 PHE A 247 -1 O ALA A 244 N ASN A 236 SHEET 4 D 6 ALA A 354 THR A 361 1 O LEU A 360 N PHE A 247 SHEET 5 D 6 GLU A 435 ASN A 440 1 O TYR A 437 N PHE A 359 SHEET 6 D 6 VAL A 371 LYS A 373 -1 N SER A 372 O LEU A 438 SHEET 1 E 2 VAL A 314 VAL A 315 0 SHEET 2 E 2 VAL A 321 ASP A 322 -1 O ASP A 322 N VAL A 314 SHEET 1 F 2 PHE A 387 THR A 388 0 SHEET 2 F 2 THR A 404 PHE A 405 -1 O THR A 404 N THR A 388 SHEET 1 G 2 MET A 472 LEU A 475 0 SHEET 2 G 2 LEU A 480 PRO A 483 -1 O ILE A 482 N GLY A 473 LINK SG CYS A 74 S2 BME A 593 1555 1555 2.04 LINK SG CYS A 175 S1 DT3 A 592 1555 1555 2.03 LINK SG CYS A 285 S2 BME A 594 1555 1555 2.01 LINK NZ LYS A 213 MN MN A 560 1555 1555 2.29 LINK NE2 HIS A 232 MN MN A 560 1555 1555 2.23 LINK OD1 ASP A 269 MN MN A 560 1555 1555 2.35 LINK OD2 ASP A 269 MN MN A 560 1555 1555 2.57 LINK MN MN A 560 O HOH A 753 1555 1555 2.39 LINK MN MN A 560 O HOH A 863 1555 1555 2.40 LINK MN MN A 560 O HOH A 864 1555 1555 2.20 CISPEP 1 ARG A 346 PRO A 347 0 0.12 SITE 1 AC1 6 LYS A 213 HIS A 232 ASP A 269 HOH A 753 SITE 2 AC1 6 HOH A 863 HOH A 864 SITE 1 AC2 8 LEU A 249 SER A 250 GLY A 251 THR A 252 SITE 2 AC2 8 GLY A 253 LYS A 254 THR A 255 HOH A 818 SITE 1 AC3 4 ARG A 154 TYR A 339 ARG A 346 HOH A 656 SITE 1 AC4 5 LEU A 108 LYS A 111 GLN A 112 CYS A 175 SITE 2 AC4 5 THR A 176 SITE 1 AC5 3 CYS A 74 LYS A 79 TRP A 84 SITE 1 AC6 5 LEU A 265 ASP A 268 CYS A 285 TYR A 336 SITE 2 AC6 5 HOH A 872 SITE 1 AC7 8 ARG A 65 TYR A 207 LYS A 213 ARG A 333 SITE 2 AC7 8 PHE A 413 HOH A 753 HOH A 857 HOH A 864 SITE 1 AC8 5 ALA A 56 ASP A 58 LYS A 328 HOH A 657 SITE 2 AC8 5 HOH A 694 SITE 1 AC9 5 PHE A 44 ASP A 58 GLY A 60 THR A 63 SITE 2 AC9 5 ASN A 312 SITE 1 BC1 6 PHE A 44 GLY A 60 ILE A 61 GLY A 204 SITE 2 BC1 6 TRP A 206 HOH A 613 CRYST1 56.737 55.089 90.077 90.00 106.17 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017625 0.000000 0.005111 0.00000 SCALE2 0.000000 0.018152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011559 0.00000