data_1YLN # _entry.id 1YLN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1YLN RCSB RCSB031659 WWPDB D_1000031659 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC27154 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YLN _pdbx_database_status.recvd_initial_deposition_date 2005-01-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, R.' 1 'Zhou, M.' 2 'Moy, S.' 3 'Collart, F.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title 'The crystal structure of the hypothetical protein vca0042 from Vibrio cholerae O1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zhang, R.' 1 primary 'Zhou, M.' 2 primary 'Moy, S.' 3 primary 'Collart, F.' 4 primary 'Joachimiak, A.' 5 # _cell.entry_id 1YLN _cell.length_a 56.429 _cell.length_b 56.429 _cell.length_c 171.128 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YLN _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein vca0042' 28498.623 1 ? ? ? ? 2 water nat water 18.015 135 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MNSRPAEKIDNNDGQTETPRSKTVSTINSTDALAMVEH(OSE)SELTLSITTPVGTKFVCRTPFIGTHTDKFLLVEMPKI SADDLQYFFQEGFWMNIRAISPRGEGALIHFRSQLMHILQEPVPMAFLSIPNTMQVSQLRKEPRFELNLAGKVLFDEHRG DCELRDLSRSGCRFITPPLGKTYQVGDLVALEIFSDLRGTKTFPPLTGKICNLQRSLHHARYGLEFNEEGRNNAKNLLAQ LKFNGTKLTLNAEKKA ; _entity_poly.pdbx_seq_one_letter_code_can ;MNSRPAEKIDNNDGQTETPRSKTVSTINSTDALAMVEHSSELTLSITTPVGTKFVCRTPFIGTHTDKFLLVEMPKISADD LQYFFQEGFWMNIRAISPRGEGALIHFRSQLMHILQEPVPMAFLSIPNTMQVSQLRKEPRFELNLAGKVLFDEHRGDCEL RDLSRSGCRFITPPLGKTYQVGDLVALEIFSDLRGTKTFPPLTGKICNLQRSLHHARYGLEFNEEGRNNAKNLLAQLKFN GTKLTLNAEKKA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC27154 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 SER n 1 4 ARG n 1 5 PRO n 1 6 ALA n 1 7 GLU n 1 8 LYS n 1 9 ILE n 1 10 ASP n 1 11 ASN n 1 12 ASN n 1 13 ASP n 1 14 GLY n 1 15 GLN n 1 16 THR n 1 17 GLU n 1 18 THR n 1 19 PRO n 1 20 ARG n 1 21 SER n 1 22 LYS n 1 23 THR n 1 24 VAL n 1 25 SER n 1 26 THR n 1 27 ILE n 1 28 ASN n 1 29 SER n 1 30 THR n 1 31 ASP n 1 32 ALA n 1 33 LEU n 1 34 ALA n 1 35 MET n 1 36 VAL n 1 37 GLU n 1 38 HIS n 1 39 OSE n 1 40 SER n 1 41 GLU n 1 42 LEU n 1 43 THR n 1 44 LEU n 1 45 SER n 1 46 ILE n 1 47 THR n 1 48 THR n 1 49 PRO n 1 50 VAL n 1 51 GLY n 1 52 THR n 1 53 LYS n 1 54 PHE n 1 55 VAL n 1 56 CYS n 1 57 ARG n 1 58 THR n 1 59 PRO n 1 60 PHE n 1 61 ILE n 1 62 GLY n 1 63 THR n 1 64 HIS n 1 65 THR n 1 66 ASP n 1 67 LYS n 1 68 PHE n 1 69 LEU n 1 70 LEU n 1 71 VAL n 1 72 GLU n 1 73 MET n 1 74 PRO n 1 75 LYS n 1 76 ILE n 1 77 SER n 1 78 ALA n 1 79 ASP n 1 80 ASP n 1 81 LEU n 1 82 GLN n 1 83 TYR n 1 84 PHE n 1 85 PHE n 1 86 GLN n 1 87 GLU n 1 88 GLY n 1 89 PHE n 1 90 TRP n 1 91 MET n 1 92 ASN n 1 93 ILE n 1 94 ARG n 1 95 ALA n 1 96 ILE n 1 97 SER n 1 98 PRO n 1 99 ARG n 1 100 GLY n 1 101 GLU n 1 102 GLY n 1 103 ALA n 1 104 LEU n 1 105 ILE n 1 106 HIS n 1 107 PHE n 1 108 ARG n 1 109 SER n 1 110 GLN n 1 111 LEU n 1 112 MET n 1 113 HIS n 1 114 ILE n 1 115 LEU n 1 116 GLN n 1 117 GLU n 1 118 PRO n 1 119 VAL n 1 120 PRO n 1 121 MET n 1 122 ALA n 1 123 PHE n 1 124 LEU n 1 125 SER n 1 126 ILE n 1 127 PRO n 1 128 ASN n 1 129 THR n 1 130 MET n 1 131 GLN n 1 132 VAL n 1 133 SER n 1 134 GLN n 1 135 LEU n 1 136 ARG n 1 137 LYS n 1 138 GLU n 1 139 PRO n 1 140 ARG n 1 141 PHE n 1 142 GLU n 1 143 LEU n 1 144 ASN n 1 145 LEU n 1 146 ALA n 1 147 GLY n 1 148 LYS n 1 149 VAL n 1 150 LEU n 1 151 PHE n 1 152 ASP n 1 153 GLU n 1 154 HIS n 1 155 ARG n 1 156 GLY n 1 157 ASP n 1 158 CYS n 1 159 GLU n 1 160 LEU n 1 161 ARG n 1 162 ASP n 1 163 LEU n 1 164 SER n 1 165 ARG n 1 166 SER n 1 167 GLY n 1 168 CYS n 1 169 ARG n 1 170 PHE n 1 171 ILE n 1 172 THR n 1 173 PRO n 1 174 PRO n 1 175 LEU n 1 176 GLY n 1 177 LYS n 1 178 THR n 1 179 TYR n 1 180 GLN n 1 181 VAL n 1 182 GLY n 1 183 ASP n 1 184 LEU n 1 185 VAL n 1 186 ALA n 1 187 LEU n 1 188 GLU n 1 189 ILE n 1 190 PHE n 1 191 SER n 1 192 ASP n 1 193 LEU n 1 194 ARG n 1 195 GLY n 1 196 THR n 1 197 LYS n 1 198 THR n 1 199 PHE n 1 200 PRO n 1 201 PRO n 1 202 LEU n 1 203 THR n 1 204 GLY n 1 205 LYS n 1 206 ILE n 1 207 CYS n 1 208 ASN n 1 209 LEU n 1 210 GLN n 1 211 ARG n 1 212 SER n 1 213 LEU n 1 214 HIS n 1 215 HIS n 1 216 ALA n 1 217 ARG n 1 218 TYR n 1 219 GLY n 1 220 LEU n 1 221 GLU n 1 222 PHE n 1 223 ASN n 1 224 GLU n 1 225 GLU n 1 226 GLY n 1 227 ARG n 1 228 ASN n 1 229 ASN n 1 230 ALA n 1 231 LYS n 1 232 ASN n 1 233 LEU n 1 234 LEU n 1 235 ALA n 1 236 GLN n 1 237 LEU n 1 238 LYS n 1 239 PHE n 1 240 ASN n 1 241 GLY n 1 242 THR n 1 243 LYS n 1 244 LEU n 1 245 THR n 1 246 LEU n 1 247 ASN n 1 248 ALA n 1 249 GLU n 1 250 LYS n 1 251 LYS n 1 252 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Vibrio _entity_src_gen.pdbx_gene_src_gene GI:9657424 _entity_src_gen.gene_src_species 'Vibrio cholerae' _entity_src_gen.gene_src_strain N16961 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Vibrio cholerae O1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 127906 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PDM68 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code AAF95956 _struct_ref.pdbx_db_accession 9657424 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNSRPAEKIDNNDGQTETPRSKTVSTINSTDALAMVEHSSELTLSITTPVGTKFVCRTPFIGTHTDKFLLVEMPKISADD LQYFFQEGFWMNIRAISPRGEGALIHFRSQLMHILQEPVPMAFLSIPNTMQVSQLRKEPRFELNLAGKVLFDEHRGDCEL RDLSRSGCRFITPPLGKTYQVGDLVALEIFSDLRGTKTFPPLTGKICNLQRSLHHARYGLEFNEEGRNNAKNLLAQLKFN GTKLTLNAEKKA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YLN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 252 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9657424 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 252 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 252 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1YLN _struct_ref_seq_dif.mon_id OSE _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 39 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name GB _struct_ref_seq_dif.pdbx_seq_db_accession_code 9657424 _struct_ref_seq_dif.db_mon_id SER _struct_ref_seq_dif.pdbx_seq_db_seq_num 39 _struct_ref_seq_dif.details 'MODIFIED RESIDUE' _struct_ref_seq_dif.pdbx_auth_seq_num 39 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OSE 'L-peptide linking' n O-SULFO-L-SERINE ? 'C3 H7 N O6 S' 185.156 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1YLN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.714 _exptl_crystal.density_percent_sol 52.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '1.0 M K/Na tartrate, 0.1M Tris, 0.2M Li2SO4, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-2 _diffrn_detector.pdbx_collection_date 2004-08-25 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795 # _reflns.entry_id 1YLN _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 40 _reflns.d_resolution_high 2.2 _reflns.number_obs 30326 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.142 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.83 _reflns.B_iso_Wilson_estimate 16.3 _reflns.pdbx_redundancy 9.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 95.7 _reflns_shell.Rmerge_I_obs 0.459 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.04 _reflns_shell.pdbx_redundancy 4.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1652 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1YLN _refine.ls_number_reflns_obs 27829 _refine.ls_number_reflns_all 30956 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 220916.95 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.19 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 89.9 _refine.ls_R_factor_obs 0.21 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21 _refine.ls_R_factor_R_free 0.243 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 1366 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 30.2 _refine.aniso_B[1][1] 3.28 _refine.aniso_B[2][2] 3.28 _refine.aniso_B[3][3] -6.56 _refine.aniso_B[1][2] 3.58 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.351434 _refine.solvent_model_param_bsol 32.1882 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;Used "HLML" target in CNS refinement in which the friedel's pair was treated as two seperated reflections. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1YLN _refine_analyze.Luzzati_coordinate_error_obs 0.29 _refine_analyze.Luzzati_sigma_a_obs 0.36 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.36 _refine_analyze.Luzzati_sigma_a_free 0.38 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1793 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 135 _refine_hist.number_atoms_total 1928 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 32.19 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.4 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.89 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.34 _refine_ls_shell.number_reflns_R_work 3532 _refine_ls_shell.R_factor_R_work 0.334 _refine_ls_shell.percent_reflns_obs 72.0 _refine_ls_shell.R_factor_R_free 0.356 _refine_ls_shell.R_factor_R_free_error 0.025 _refine_ls_shell.percent_reflns_R_free 5.6 _refine_ls_shell.number_reflns_R_free 208 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP1.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' 3 ION.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1YLN _struct.title 'The Crystal Structure of the Protein of Unknown Function VCA0042 from Vibrio cholerae O1' _struct.pdbx_descriptor 'hypothetical protein vca0042' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YLN _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;Vibrio cholerae O1, beta barrels, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ;This trotein exists as dimer. The second part of the biological assembly is generated by : y, x,-z ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 29 ? MET A 35 ? SER A 29 MET A 35 1 ? 7 HELX_P HELX_P2 2 SER A 77 ? PHE A 85 ? SER A 77 PHE A 85 1 ? 9 HELX_P HELX_P3 3 ASN A 223 ? GLN A 236 ? ASN A 223 GLN A 236 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A HIS 38 C ? ? ? 1_555 A OSE 39 N ? ? A HIS 38 A OSE 39 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale ? ? A OSE 39 C ? ? ? 1_555 A SER 40 N ? ? A OSE 39 A SER 40 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 117 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 117 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 118 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 118 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.02 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 9 ? B ? 7 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 25 ? ASN A 28 ? SER A 25 ASN A 28 A 2 THR A 129 ? GLN A 134 ? THR A 129 GLN A 134 A 3 ALA A 103 ? LEU A 115 ? ALA A 103 LEU A 115 A 4 MET A 121 ? LEU A 124 ? MET A 121 LEU A 124 A 5 PHE A 68 ? GLU A 72 ? PHE A 68 GLU A 72 A 6 LYS A 53 ? HIS A 64 ? LYS A 53 HIS A 64 A 7 GLU A 41 ? THR A 47 ? GLU A 41 THR A 47 A 8 TRP A 90 ? SER A 97 ? TRP A 90 SER A 97 A 9 ALA A 103 ? LEU A 115 ? ALA A 103 LEU A 115 B 1 PHE A 141 ? PHE A 151 ? PHE A 141 PHE A 151 B 2 HIS A 154 ? LEU A 163 ? HIS A 154 LEU A 163 B 3 GLY A 167 ? THR A 172 ? GLY A 167 THR A 172 B 4 ALA A 216 ? PHE A 222 ? ALA A 216 PHE A 222 B 5 LEU A 202 ? ARG A 211 ? LEU A 202 ARG A 211 B 6 LEU A 184 ? ILE A 189 ? LEU A 184 ILE A 189 B 7 PHE A 141 ? PHE A 151 ? PHE A 141 PHE A 151 C 1 LEU A 237 ? PHE A 239 ? LEU A 237 PHE A 239 C 2 LEU A 244 ? LEU A 246 ? LEU A 244 LEU A 246 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 25 ? N SER A 25 O VAL A 132 ? O VAL A 132 A 2 3 O SER A 133 ? O SER A 133 N LEU A 104 ? N LEU A 104 A 3 4 N HIS A 113 ? N HIS A 113 O PHE A 123 ? O PHE A 123 A 4 5 O LEU A 124 ? O LEU A 124 N LEU A 69 ? N LEU A 69 A 5 6 O LEU A 70 ? O LEU A 70 N ILE A 61 ? N ILE A 61 A 6 7 O PHE A 54 ? O PHE A 54 N ILE A 46 ? N ILE A 46 A 7 8 N SER A 45 ? N SER A 45 O ASN A 92 ? O ASN A 92 A 8 9 N MET A 91 ? N MET A 91 O SER A 109 ? O SER A 109 B 1 2 N LEU A 145 ? N LEU A 145 O LEU A 160 ? O LEU A 160 B 2 3 N ARG A 161 ? N ARG A 161 O ARG A 169 ? O ARG A 169 B 3 4 N CYS A 168 ? N CYS A 168 O LEU A 220 ? O LEU A 220 B 4 5 O ARG A 217 ? O ARG A 217 N GLN A 210 ? N GLN A 210 B 5 6 O LEU A 202 ? O LEU A 202 N LEU A 187 ? N LEU A 187 B 6 7 O GLU A 188 ? O GLU A 188 N LYS A 148 ? N LYS A 148 C 1 2 N LYS A 238 ? N LYS A 238 O THR A 245 ? O THR A 245 # _database_PDB_matrix.entry_id 1YLN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1YLN _atom_sites.fract_transf_matrix[1][1] 0.017721 _atom_sites.fract_transf_matrix[1][2] 0.010231 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020463 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005844 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ASN 2 2 ? ? ? A . n A 1 3 SER 3 3 ? ? ? A . n A 1 4 ARG 4 4 ? ? ? A . n A 1 5 PRO 5 5 ? ? ? A . n A 1 6 ALA 6 6 ? ? ? A . n A 1 7 GLU 7 7 ? ? ? A . n A 1 8 LYS 8 8 ? ? ? A . n A 1 9 ILE 9 9 ? ? ? A . n A 1 10 ASP 10 10 ? ? ? A . n A 1 11 ASN 11 11 ? ? ? A . n A 1 12 ASN 12 12 ? ? ? A . n A 1 13 ASP 13 13 ? ? ? A . n A 1 14 GLY 14 14 ? ? ? A . n A 1 15 GLN 15 15 ? ? ? A . n A 1 16 THR 16 16 ? ? ? A . n A 1 17 GLU 17 17 ? ? ? A . n A 1 18 THR 18 18 ? ? ? A . n A 1 19 PRO 19 19 ? ? ? A . n A 1 20 ARG 20 20 ? ? ? A . n A 1 21 SER 21 21 ? ? ? A . n A 1 22 LYS 22 22 ? ? ? A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 MET 35 35 35 MET MET A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 HIS 38 38 38 HIS HIS A . n A 1 39 OSE 39 39 39 OSE OSE A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 HIS 64 64 64 HIS HIS A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 PHE 68 68 68 PHE PHE A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 MET 73 73 73 MET MET A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 TYR 83 83 83 TYR TYR A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 GLN 86 86 86 GLN GLN A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 TRP 90 90 90 TRP TRP A . n A 1 91 MET 91 91 91 MET MET A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 HIS 106 106 106 HIS HIS A . n A 1 107 PHE 107 107 107 PHE PHE A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 GLN 110 110 110 GLN GLN A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 MET 112 112 112 MET MET A . n A 1 113 HIS 113 113 113 HIS HIS A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 GLN 116 116 116 GLN GLN A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 VAL 119 119 119 VAL VAL A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 MET 121 121 121 MET MET A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 PHE 123 123 123 PHE PHE A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 ILE 126 126 126 ILE ILE A . n A 1 127 PRO 127 127 127 PRO PRO A . n A 1 128 ASN 128 128 128 ASN ASN A . n A 1 129 THR 129 129 129 THR THR A . n A 1 130 MET 130 130 130 MET MET A . n A 1 131 GLN 131 131 131 GLN GLN A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 GLN 134 134 134 GLN GLN A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 ARG 136 136 136 ARG ARG A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 PRO 139 139 139 PRO PRO A . n A 1 140 ARG 140 140 140 ARG ARG A . n A 1 141 PHE 141 141 141 PHE PHE A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 ASN 144 144 144 ASN ASN A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 PHE 151 151 151 PHE PHE A . n A 1 152 ASP 152 152 152 ASP ASP A . n A 1 153 GLU 153 153 153 GLU GLU A . n A 1 154 HIS 154 154 154 HIS HIS A . n A 1 155 ARG 155 155 155 ARG ARG A . n A 1 156 GLY 156 156 156 GLY GLY A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 CYS 158 158 158 CYS CYS A . n A 1 159 GLU 159 159 159 GLU GLU A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 ARG 161 161 161 ARG ARG A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 SER 164 164 164 SER SER A . n A 1 165 ARG 165 165 165 ARG ARG A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 GLY 167 167 167 GLY GLY A . n A 1 168 CYS 168 168 168 CYS CYS A . n A 1 169 ARG 169 169 169 ARG ARG A . n A 1 170 PHE 170 170 170 PHE PHE A . n A 1 171 ILE 171 171 171 ILE ILE A . n A 1 172 THR 172 172 172 THR THR A . n A 1 173 PRO 173 173 173 PRO PRO A . n A 1 174 PRO 174 174 174 PRO PRO A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 LYS 177 177 177 LYS LYS A . n A 1 178 THR 178 178 178 THR THR A . n A 1 179 TYR 179 179 179 TYR TYR A . n A 1 180 GLN 180 180 180 GLN GLN A . n A 1 181 VAL 181 181 181 VAL VAL A . n A 1 182 GLY 182 182 182 GLY GLY A . n A 1 183 ASP 183 183 183 ASP ASP A . n A 1 184 LEU 184 184 184 LEU LEU A . n A 1 185 VAL 185 185 185 VAL VAL A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 LEU 187 187 187 LEU LEU A . n A 1 188 GLU 188 188 188 GLU GLU A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 PHE 190 190 190 PHE PHE A . n A 1 191 SER 191 191 191 SER SER A . n A 1 192 ASP 192 192 192 ASP ASP A . n A 1 193 LEU 193 193 193 LEU LEU A . n A 1 194 ARG 194 194 194 ARG ARG A . n A 1 195 GLY 195 195 195 GLY GLY A . n A 1 196 THR 196 196 196 THR THR A . n A 1 197 LYS 197 197 197 LYS LYS A . n A 1 198 THR 198 198 198 THR THR A . n A 1 199 PHE 199 199 199 PHE PHE A . n A 1 200 PRO 200 200 200 PRO PRO A . n A 1 201 PRO 201 201 201 PRO PRO A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 THR 203 203 203 THR THR A . n A 1 204 GLY 204 204 204 GLY GLY A . n A 1 205 LYS 205 205 205 LYS LYS A . n A 1 206 ILE 206 206 206 ILE ILE A . n A 1 207 CYS 207 207 207 CYS CYS A . n A 1 208 ASN 208 208 208 ASN ASN A . n A 1 209 LEU 209 209 209 LEU LEU A . n A 1 210 GLN 210 210 210 GLN GLN A . n A 1 211 ARG 211 211 211 ARG ARG A . n A 1 212 SER 212 212 212 SER SER A . n A 1 213 LEU 213 213 213 LEU LEU A . n A 1 214 HIS 214 214 214 HIS HIS A . n A 1 215 HIS 215 215 215 HIS HIS A . n A 1 216 ALA 216 216 216 ALA ALA A . n A 1 217 ARG 217 217 217 ARG ARG A . n A 1 218 TYR 218 218 218 TYR TYR A . n A 1 219 GLY 219 219 219 GLY GLY A . n A 1 220 LEU 220 220 220 LEU LEU A . n A 1 221 GLU 221 221 221 GLU GLU A . n A 1 222 PHE 222 222 222 PHE PHE A . n A 1 223 ASN 223 223 223 ASN ASN A . n A 1 224 GLU 224 224 224 GLU GLU A . n A 1 225 GLU 225 225 225 GLU GLU A . n A 1 226 GLY 226 226 226 GLY GLY A . n A 1 227 ARG 227 227 227 ARG ARG A . n A 1 228 ASN 228 228 228 ASN ASN A . n A 1 229 ASN 229 229 229 ASN ASN A . n A 1 230 ALA 230 230 230 ALA ALA A . n A 1 231 LYS 231 231 231 LYS LYS A . n A 1 232 ASN 232 232 232 ASN ASN A . n A 1 233 LEU 233 233 233 LEU LEU A . n A 1 234 LEU 234 234 234 LEU LEU A . n A 1 235 ALA 235 235 235 ALA ALA A . n A 1 236 GLN 236 236 236 GLN GLN A . n A 1 237 LEU 237 237 237 LEU LEU A . n A 1 238 LYS 238 238 238 LYS LYS A . n A 1 239 PHE 239 239 239 PHE PHE A . n A 1 240 ASN 240 240 240 ASN ASN A . n A 1 241 GLY 241 241 241 GLY GLY A . n A 1 242 THR 242 242 242 THR THR A . n A 1 243 LYS 243 243 243 LYS LYS A . n A 1 244 LEU 244 244 244 LEU LEU A . n A 1 245 THR 245 245 245 THR THR A . n A 1 246 LEU 246 246 246 LEU LEU A . n A 1 247 ASN 247 247 247 ASN ASN A . n A 1 248 ALA 248 248 248 ALA ALA A . n A 1 249 GLU 249 249 ? ? ? A . n A 1 250 LYS 250 250 ? ? ? A . n A 1 251 LYS 251 251 ? ? ? A . n A 1 252 ALA 252 252 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id OSE _pdbx_struct_mod_residue.label_seq_id 39 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id OSE _pdbx_struct_mod_residue.auth_seq_id 39 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id SER _pdbx_struct_mod_residue.details O-SULFO-L-SERINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-03-08 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 SBC-Collect 'data collection' . ? 2 HKL-2000 'data scaling' . ? 3 CNS phasing . ? 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O1S _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 OSE _pdbx_validate_symm_contact.auth_seq_id_1 39 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 308 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_555 _pdbx_validate_symm_contact.dist 1.66 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 OSE A 39 ? ? 75.00 -8.74 2 1 THR A 65 ? ? 40.37 -117.91 3 1 ASN A 144 ? ? -161.70 72.81 4 1 GLU A 153 ? ? 68.62 -4.71 5 1 THR A 196 ? ? -148.79 -28.80 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ASN 2 ? A ASN 2 3 1 Y 1 A SER 3 ? A SER 3 4 1 Y 1 A ARG 4 ? A ARG 4 5 1 Y 1 A PRO 5 ? A PRO 5 6 1 Y 1 A ALA 6 ? A ALA 6 7 1 Y 1 A GLU 7 ? A GLU 7 8 1 Y 1 A LYS 8 ? A LYS 8 9 1 Y 1 A ILE 9 ? A ILE 9 10 1 Y 1 A ASP 10 ? A ASP 10 11 1 Y 1 A ASN 11 ? A ASN 11 12 1 Y 1 A ASN 12 ? A ASN 12 13 1 Y 1 A ASP 13 ? A ASP 13 14 1 Y 1 A GLY 14 ? A GLY 14 15 1 Y 1 A GLN 15 ? A GLN 15 16 1 Y 1 A THR 16 ? A THR 16 17 1 Y 1 A GLU 17 ? A GLU 17 18 1 Y 1 A THR 18 ? A THR 18 19 1 Y 1 A PRO 19 ? A PRO 19 20 1 Y 1 A ARG 20 ? A ARG 20 21 1 Y 1 A SER 21 ? A SER 21 22 1 Y 1 A LYS 22 ? A LYS 22 23 1 Y 1 A GLU 249 ? A GLU 249 24 1 Y 1 A LYS 250 ? A LYS 250 25 1 Y 1 A LYS 251 ? A LYS 251 26 1 Y 1 A ALA 252 ? A ALA 252 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 301 301 HOH TIP A . B 2 HOH 2 302 302 HOH TIP A . B 2 HOH 3 303 303 HOH TIP A . B 2 HOH 4 304 304 HOH TIP A . B 2 HOH 5 305 305 HOH TIP A . B 2 HOH 6 306 306 HOH TIP A . B 2 HOH 7 307 307 HOH TIP A . B 2 HOH 8 308 308 HOH TIP A . B 2 HOH 9 309 309 HOH TIP A . B 2 HOH 10 310 310 HOH TIP A . B 2 HOH 11 311 311 HOH TIP A . B 2 HOH 12 312 312 HOH TIP A . B 2 HOH 13 313 313 HOH TIP A . B 2 HOH 14 314 314 HOH TIP A . B 2 HOH 15 315 315 HOH TIP A . B 2 HOH 16 316 316 HOH TIP A . B 2 HOH 17 317 317 HOH TIP A . B 2 HOH 18 318 318 HOH TIP A . B 2 HOH 19 319 319 HOH TIP A . B 2 HOH 20 320 320 HOH TIP A . B 2 HOH 21 321 321 HOH TIP A . B 2 HOH 22 322 322 HOH TIP A . B 2 HOH 23 323 323 HOH TIP A . B 2 HOH 24 324 324 HOH TIP A . B 2 HOH 25 325 325 HOH TIP A . B 2 HOH 26 326 326 HOH TIP A . B 2 HOH 27 327 327 HOH TIP A . B 2 HOH 28 328 328 HOH TIP A . B 2 HOH 29 329 329 HOH TIP A . B 2 HOH 30 330 330 HOH TIP A . B 2 HOH 31 331 331 HOH TIP A . B 2 HOH 32 332 332 HOH TIP A . B 2 HOH 33 333 333 HOH TIP A . B 2 HOH 34 334 334 HOH TIP A . B 2 HOH 35 335 335 HOH TIP A . B 2 HOH 36 336 336 HOH TIP A . B 2 HOH 37 337 337 HOH TIP A . B 2 HOH 38 338 338 HOH TIP A . B 2 HOH 39 339 339 HOH TIP A . B 2 HOH 40 340 340 HOH TIP A . B 2 HOH 41 341 341 HOH TIP A . B 2 HOH 42 342 342 HOH TIP A . B 2 HOH 43 343 343 HOH TIP A . B 2 HOH 44 344 344 HOH TIP A . B 2 HOH 45 345 345 HOH TIP A . B 2 HOH 46 346 346 HOH TIP A . B 2 HOH 47 347 347 HOH TIP A . B 2 HOH 48 348 348 HOH TIP A . B 2 HOH 49 349 349 HOH TIP A . B 2 HOH 50 350 350 HOH TIP A . B 2 HOH 51 351 351 HOH TIP A . B 2 HOH 52 352 352 HOH TIP A . B 2 HOH 53 353 353 HOH TIP A . B 2 HOH 54 354 354 HOH TIP A . B 2 HOH 55 355 355 HOH TIP A . B 2 HOH 56 356 356 HOH TIP A . B 2 HOH 57 357 357 HOH TIP A . B 2 HOH 58 358 358 HOH TIP A . B 2 HOH 59 359 359 HOH TIP A . B 2 HOH 60 360 360 HOH TIP A . B 2 HOH 61 361 361 HOH TIP A . B 2 HOH 62 362 362 HOH TIP A . B 2 HOH 63 363 363 HOH TIP A . B 2 HOH 64 364 364 HOH TIP A . B 2 HOH 65 365 365 HOH TIP A . B 2 HOH 66 366 366 HOH TIP A . B 2 HOH 67 367 367 HOH TIP A . B 2 HOH 68 368 368 HOH TIP A . B 2 HOH 69 369 369 HOH TIP A . B 2 HOH 70 370 370 HOH TIP A . B 2 HOH 71 371 371 HOH TIP A . B 2 HOH 72 372 372 HOH TIP A . B 2 HOH 73 373 373 HOH TIP A . B 2 HOH 74 374 374 HOH TIP A . B 2 HOH 75 375 375 HOH TIP A . B 2 HOH 76 376 376 HOH TIP A . B 2 HOH 77 377 377 HOH TIP A . B 2 HOH 78 378 378 HOH TIP A . B 2 HOH 79 379 379 HOH TIP A . B 2 HOH 80 380 380 HOH TIP A . B 2 HOH 81 381 381 HOH TIP A . B 2 HOH 82 382 382 HOH TIP A . B 2 HOH 83 383 383 HOH TIP A . B 2 HOH 84 384 384 HOH TIP A . B 2 HOH 85 385 385 HOH TIP A . B 2 HOH 86 386 386 HOH TIP A . B 2 HOH 87 387 387 HOH TIP A . B 2 HOH 88 388 388 HOH TIP A . B 2 HOH 89 389 389 HOH TIP A . B 2 HOH 90 390 390 HOH TIP A . B 2 HOH 91 391 391 HOH TIP A . B 2 HOH 92 392 392 HOH TIP A . B 2 HOH 93 393 393 HOH TIP A . B 2 HOH 94 394 394 HOH TIP A . B 2 HOH 95 395 395 HOH TIP A . B 2 HOH 96 396 396 HOH TIP A . B 2 HOH 97 397 397 HOH TIP A . B 2 HOH 98 398 398 HOH TIP A . B 2 HOH 99 399 399 HOH TIP A . B 2 HOH 100 400 400 HOH TIP A . B 2 HOH 101 401 401 HOH TIP A . B 2 HOH 102 402 402 HOH TIP A . B 2 HOH 103 403 403 HOH TIP A . B 2 HOH 104 404 404 HOH TIP A . B 2 HOH 105 405 405 HOH TIP A . B 2 HOH 106 406 406 HOH TIP A . B 2 HOH 107 407 407 HOH TIP A . B 2 HOH 108 408 408 HOH TIP A . B 2 HOH 109 409 409 HOH TIP A . B 2 HOH 110 410 410 HOH TIP A . B 2 HOH 111 411 411 HOH TIP A . B 2 HOH 112 412 412 HOH TIP A . B 2 HOH 113 413 413 HOH TIP A . B 2 HOH 114 414 414 HOH TIP A . B 2 HOH 115 415 415 HOH TIP A . B 2 HOH 116 416 416 HOH TIP A . B 2 HOH 117 417 417 HOH TIP A . B 2 HOH 118 418 418 HOH TIP A . B 2 HOH 119 419 419 HOH TIP A . B 2 HOH 120 420 420 HOH TIP A . B 2 HOH 121 421 421 HOH TIP A . B 2 HOH 122 422 422 HOH TIP A . B 2 HOH 123 423 423 HOH TIP A . B 2 HOH 124 424 424 HOH TIP A . B 2 HOH 125 425 425 HOH TIP A . B 2 HOH 126 426 426 HOH TIP A . B 2 HOH 127 427 427 HOH TIP A . B 2 HOH 128 428 428 HOH TIP A . B 2 HOH 129 429 429 HOH TIP A . B 2 HOH 130 430 430 HOH TIP A . B 2 HOH 131 431 431 HOH TIP A . B 2 HOH 132 432 432 HOH TIP A . B 2 HOH 133 433 433 HOH TIP A . B 2 HOH 134 434 434 HOH TIP A . B 2 HOH 135 435 435 HOH TIP A . #