data_1YM0
#
_entry.id 1YM0
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.397
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1YM0 pdb_00001ym0 10.2210/pdb1ym0/pdb
RCSB RCSB031671 ? ?
WWPDB D_1000031671 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2005-04-19
2 'Structure model' 1 1 2008-04-30
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 2 0 2019-12-25
5 'Structure model' 3 0 2020-07-29
6 'Structure model' 3 1 2023-10-25
7 'Structure model' 3 2 2024-10-16
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Non-polymer description'
3 3 'Structure model' 'Version format compliance'
4 4 'Structure model' 'Data collection'
5 4 'Structure model' 'Derived calculations'
6 4 'Structure model' 'Polymer sequence'
7 5 'Structure model' Advisory
8 5 'Structure model' 'Atomic model'
9 5 'Structure model' 'Data collection'
10 5 'Structure model' 'Derived calculations'
11 5 'Structure model' 'Structure summary'
12 6 'Structure model' 'Data collection'
13 6 'Structure model' 'Database references'
14 6 'Structure model' 'Derived calculations'
15 6 'Structure model' 'Refinement description'
16 6 'Structure model' 'Structure summary'
17 7 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp
2 4 'Structure model' entity_poly
3 4 'Structure model' pdbx_struct_mod_residue
4 4 'Structure model' struct_conn
5 5 'Structure model' atom_site
6 5 'Structure model' chem_comp
7 5 'Structure model' database_PDB_caveat
8 5 'Structure model' entity
9 5 'Structure model' pdbx_branch_scheme
10 5 'Structure model' pdbx_chem_comp_identifier
11 5 'Structure model' pdbx_entity_branch
12 5 'Structure model' pdbx_entity_branch_descriptor
13 5 'Structure model' pdbx_entity_branch_link
14 5 'Structure model' pdbx_entity_branch_list
15 5 'Structure model' pdbx_entity_nonpoly
16 5 'Structure model' pdbx_nonpoly_scheme
17 5 'Structure model' pdbx_struct_assembly_gen
18 5 'Structure model' pdbx_struct_conn_angle
19 5 'Structure model' pdbx_struct_special_symmetry
20 5 'Structure model' pdbx_validate_chiral
21 5 'Structure model' struct_asym
22 5 'Structure model' struct_conn
23 5 'Structure model' struct_site
24 5 'Structure model' struct_site_gen
25 6 'Structure model' chem_comp
26 6 'Structure model' chem_comp_atom
27 6 'Structure model' chem_comp_bond
28 6 'Structure model' database_2
29 6 'Structure model' pdbx_initial_refinement_model
30 6 'Structure model' struct_conn
31 7 'Structure model' pdbx_entry_details
32 7 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_chem_comp.type'
2 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can'
3 4 'Structure model' '_pdbx_struct_mod_residue.parent_comp_id'
4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
5 5 'Structure model' '_atom_site.B_iso_or_equiv'
6 5 'Structure model' '_atom_site.Cartn_x'
7 5 'Structure model' '_atom_site.Cartn_y'
8 5 'Structure model' '_atom_site.Cartn_z'
9 5 'Structure model' '_atom_site.auth_asym_id'
10 5 'Structure model' '_atom_site.auth_atom_id'
11 5 'Structure model' '_atom_site.auth_comp_id'
12 5 'Structure model' '_atom_site.auth_seq_id'
13 5 'Structure model' '_atom_site.label_asym_id'
14 5 'Structure model' '_atom_site.label_atom_id'
15 5 'Structure model' '_atom_site.label_comp_id'
16 5 'Structure model' '_atom_site.label_entity_id'
17 5 'Structure model' '_atom_site.type_symbol'
18 5 'Structure model' '_chem_comp.name'
19 5 'Structure model' '_chem_comp.type'
20 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'
22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id'
26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'
27 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id'
28 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id'
29 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_PDB_ins_code'
30 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'
31 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
32 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
33 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id'
34 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id'
35 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'
36 5 'Structure model' '_pdbx_struct_conn_angle.value'
37 5 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id'
38 5 'Structure model' '_pdbx_validate_chiral.auth_asym_id'
39 5 'Structure model' '_pdbx_validate_chiral.auth_seq_id'
40 5 'Structure model' '_struct_conn.conn_type_id'
41 5 'Structure model' '_struct_conn.id'
42 5 'Structure model' '_struct_conn.pdbx_dist_value'
43 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
44 5 'Structure model' '_struct_conn.pdbx_ptnr1_PDB_ins_code'
45 5 'Structure model' '_struct_conn.pdbx_ptnr2_PDB_ins_code'
46 5 'Structure model' '_struct_conn.pdbx_role'
47 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
48 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
49 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
50 5 'Structure model' '_struct_conn.ptnr1_label_asym_id'
51 5 'Structure model' '_struct_conn.ptnr1_label_atom_id'
52 5 'Structure model' '_struct_conn.ptnr1_label_comp_id'
53 5 'Structure model' '_struct_conn.ptnr1_label_seq_id'
54 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
55 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
56 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
57 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'
58 5 'Structure model' '_struct_conn.ptnr2_label_atom_id'
59 5 'Structure model' '_struct_conn.ptnr2_label_comp_id'
60 5 'Structure model' '_struct_conn.ptnr2_label_seq_id'
61 6 'Structure model' '_chem_comp.pdbx_synonyms'
62 6 'Structure model' '_database_2.pdbx_DOI'
63 6 'Structure model' '_database_2.pdbx_database_accession'
64 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
_database_PDB_caveat.id 1
_database_PDB_caveat.text 'MAN C 3 HAS WRONG CHIRALITY AT ATOM C1'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1YM0
_pdbx_database_status.recvd_initial_deposition_date 2005-01-20
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Wang, F.' 1
'Wang, C.' 2
'Li, M.' 3
'Zhang, J.P.' 4
'Gui, L.L.' 5
'An, X.M.' 6
'Chang, W.R.' 7
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'Crystal structure of earthworm fibrinolytic enzyme component B: a novel, glycosylated two-chained trypsin.' J.Mol.Biol.
348 671 685 2005 JMOBAK UK 0022-2836 0070 ? 15826663 10.1016/j.jmb.2005.02.055
1
'Crystallization and preliminary crystallographic analysis of earthworm fibrinolytic enzyme component B from Eisenia fetida'
'ACTA CRYSTALLOGR.,SECT.D' 60 933 935 2004 ABCRE6 DK 0907-4449 0766 ? 15103143 10.1107/S0907444904004895
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Wang, F.' 1 ?
primary 'Wang, C.' 2 ?
primary 'Li, M.' 3 ?
primary 'Zhang, J.P.' 4 ?
primary 'Gui, L.L.' 5 ?
primary 'An, X.M.' 6 ?
primary 'Chang, W.R.' 7 ?
1 'Wang, F.' 8 ?
1 'Wang, C.' 9 ?
1 'Li, M.' 10 ?
1 'Gui, L.L.' 11 ?
1 'Zhang, J.P.' 12 ?
1 'Chang, W.R.' 13 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer nat 'fibrinotic enzyme component B' 25333.105 1 3.4.21.- ? 'residues 16-245' ?
2 polymer nat 'fibrinotic enzyme component B' 2819.042 1 3.4.21.- ? 'residues 1J-13D' ?
3 branched man
;alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
;
1040.964 1 ? ? ? ?
4 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ?
5 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ?
6 water nat water 18.015 252 ? ? ? ?
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 'polypeptide(L)' no no
;IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEHDSSAASTVRQTHDVDSIFVN
ENYDPATLENDVSVIKTAVAITFDINVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVY
TSDTIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCASGYPGVYSRVGFHAGWITDTITNN
;
;IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEHDSSAASTVRQTHDVDSIFVN
ENYDPATLENDVSVIKTAVAITFDINVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVY
TSDTIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCASGYPGVYSRVGFHAGWITDTITNN
;
A ?
2 'polypeptide(L)' no yes '(PCA)PPVWYPGGQCGVSQYSDAGDMELPPG' QPPVWYPGGQCGVSQYSDAGDMELPPG B ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
4 'MAGNESIUM ION' MG
5 'SULFATE ION' SO4
6 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ILE n
1 2 VAL n
1 3 GLY n
1 4 GLY n
1 5 ILE n
1 6 GLU n
1 7 ALA n
1 8 ARG n
1 9 PRO n
1 10 TYR n
1 11 GLU n
1 12 PHE n
1 13 PRO n
1 14 TRP n
1 15 GLN n
1 16 VAL n
1 17 SER n
1 18 VAL n
1 19 ARG n
1 20 ARG n
1 21 LYS n
1 22 SER n
1 23 SER n
1 24 ASP n
1 25 SER n
1 26 HIS n
1 27 PHE n
1 28 CYS n
1 29 GLY n
1 30 GLY n
1 31 SER n
1 32 ILE n
1 33 ILE n
1 34 ASN n
1 35 ASP n
1 36 ARG n
1 37 TRP n
1 38 VAL n
1 39 VAL n
1 40 CYS n
1 41 ALA n
1 42 ALA n
1 43 HIS n
1 44 CYS n
1 45 MET n
1 46 GLN n
1 47 GLY n
1 48 GLU n
1 49 ALA n
1 50 PRO n
1 51 ALA n
1 52 LEU n
1 53 VAL n
1 54 SER n
1 55 LEU n
1 56 VAL n
1 57 VAL n
1 58 GLY n
1 59 GLU n
1 60 HIS n
1 61 ASP n
1 62 SER n
1 63 SER n
1 64 ALA n
1 65 ALA n
1 66 SER n
1 67 THR n
1 68 VAL n
1 69 ARG n
1 70 GLN n
1 71 THR n
1 72 HIS n
1 73 ASP n
1 74 VAL n
1 75 ASP n
1 76 SER n
1 77 ILE n
1 78 PHE n
1 79 VAL n
1 80 ASN n
1 81 GLU n
1 82 ASN n
1 83 TYR n
1 84 ASP n
1 85 PRO n
1 86 ALA n
1 87 THR n
1 88 LEU n
1 89 GLU n
1 90 ASN n
1 91 ASP n
1 92 VAL n
1 93 SER n
1 94 VAL n
1 95 ILE n
1 96 LYS n
1 97 THR n
1 98 ALA n
1 99 VAL n
1 100 ALA n
1 101 ILE n
1 102 THR n
1 103 PHE n
1 104 ASP n
1 105 ILE n
1 106 ASN n
1 107 VAL n
1 108 GLY n
1 109 PRO n
1 110 ILE n
1 111 CYS n
1 112 ALA n
1 113 PRO n
1 114 ASP n
1 115 PRO n
1 116 ALA n
1 117 ASN n
1 118 ASP n
1 119 TYR n
1 120 VAL n
1 121 TYR n
1 122 ARG n
1 123 LYS n
1 124 SER n
1 125 GLN n
1 126 CYS n
1 127 SER n
1 128 GLY n
1 129 TRP n
1 130 GLY n
1 131 THR n
1 132 ILE n
1 133 ASN n
1 134 SER n
1 135 GLY n
1 136 GLY n
1 137 VAL n
1 138 CYS n
1 139 CYS n
1 140 PRO n
1 141 ALA n
1 142 VAL n
1 143 LEU n
1 144 ARG n
1 145 TYR n
1 146 VAL n
1 147 THR n
1 148 LEU n
1 149 ASN n
1 150 ILE n
1 151 THR n
1 152 THR n
1 153 ASN n
1 154 ALA n
1 155 PHE n
1 156 CYS n
1 157 ASP n
1 158 ALA n
1 159 VAL n
1 160 TYR n
1 161 THR n
1 162 SER n
1 163 ASP n
1 164 THR n
1 165 ILE n
1 166 TYR n
1 167 ASP n
1 168 ASP n
1 169 MET n
1 170 ILE n
1 171 CYS n
1 172 ALA n
1 173 THR n
1 174 ASP n
1 175 ASN n
1 176 THR n
1 177 GLY n
1 178 MET n
1 179 THR n
1 180 ASP n
1 181 ARG n
1 182 ASP n
1 183 SER n
1 184 CYS n
1 185 GLN n
1 186 GLY n
1 187 ASP n
1 188 SER n
1 189 GLY n
1 190 GLY n
1 191 PRO n
1 192 LEU n
1 193 SER n
1 194 VAL n
1 195 LYS n
1 196 ASP n
1 197 GLY n
1 198 SER n
1 199 GLY n
1 200 ILE n
1 201 PHE n
1 202 SER n
1 203 LEU n
1 204 VAL n
1 205 GLY n
1 206 ILE n
1 207 VAL n
1 208 SER n
1 209 TRP n
1 210 GLY n
1 211 ILE n
1 212 GLY n
1 213 CYS n
1 214 ALA n
1 215 SER n
1 216 GLY n
1 217 TYR n
1 218 PRO n
1 219 GLY n
1 220 VAL n
1 221 TYR n
1 222 SER n
1 223 ARG n
1 224 VAL n
1 225 GLY n
1 226 PHE n
1 227 HIS n
1 228 ALA n
1 229 GLY n
1 230 TRP n
1 231 ILE n
1 232 THR n
1 233 ASP n
1 234 THR n
1 235 ILE n
1 236 THR n
1 237 ASN n
1 238 ASN n
2 1 PCA n
2 2 PRO n
2 3 PRO n
2 4 VAL n
2 5 TRP n
2 6 TYR n
2 7 PRO n
2 8 GLY n
2 9 GLY n
2 10 GLN n
2 11 CYS n
2 12 GLY n
2 13 VAL n
2 14 SER n
2 15 GLN n
2 16 TYR n
2 17 SER n
2 18 ASP n
2 19 ALA n
2 20 GLY n
2 21 ASP n
2 22 MET n
2 23 GLU n
2 24 LEU n
2 25 PRO n
2 26 PRO n
2 27 GLY n
#
loop_
_entity_src_nat.entity_id
_entity_src_nat.pdbx_src_id
_entity_src_nat.pdbx_alt_source_flag
_entity_src_nat.pdbx_beg_seq_num
_entity_src_nat.pdbx_end_seq_num
_entity_src_nat.common_name
_entity_src_nat.pdbx_organism_scientific
_entity_src_nat.pdbx_ncbi_taxonomy_id
_entity_src_nat.genus
_entity_src_nat.species
_entity_src_nat.strain
_entity_src_nat.tissue
_entity_src_nat.tissue_fraction
_entity_src_nat.pdbx_secretion
_entity_src_nat.pdbx_fragment
_entity_src_nat.pdbx_variant
_entity_src_nat.pdbx_cell_line
_entity_src_nat.pdbx_atcc
_entity_src_nat.pdbx_cellular_location
_entity_src_nat.pdbx_organ
_entity_src_nat.pdbx_organelle
_entity_src_nat.pdbx_cell
_entity_src_nat.pdbx_plasmid_name
_entity_src_nat.pdbx_plasmid_details
_entity_src_nat.details
1 1 sample ? ? 'common brandling worm' 'Eisenia fetida' 6396 Eisenia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
2 1 sample ? ? 'common brandling worm' 'Eisenia fetida' 6396 Eisenia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
#
_pdbx_entity_branch.entity_id 3
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 3 'DManpa1-3DManpa1-4DGlcpNAcb1-4[LFucpa1-3][LFucpa1-6]DGlcpNAcb1-'
'Glycam Condensed Sequence' GMML 1.0
2 3 'WURCS=2.0/3,6,5/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a1122h-1a_1-5]/1-2-1-3-3-2/a3-b1_a4-c1_a6-f1_c4-d1_d3-e1'
WURCS PDB2Glycan 1.1.0
3 3 '[]{[(4+1)][b-D-GlcpNAc]{[(3+1)][a-L-Fucp]{}[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}}}[(6+1)][a-L-Fucp]{}}}'
LINUCS PDB-CARE ?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 3 2 NAG C1 O1 1 NAG O4 HO4 sing ?
2 3 3 MAN C1 O1 2 NAG O4 HO4 sing ?
3 3 4 MAN C1 O1 3 MAN O3 HO3 sing ?
4 3 5 FUC C1 O1 1 NAG O3 HO3 sing ?
5 3 6 FUC C1 O1 1 NAG O6 HO6 sing ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose
'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6'
180.156
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305
NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose
;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
;
'C8 H15 N O6' 221.208
PCA 'L-peptide linking' n 'PYROGLUTAMIC ACID' ? 'C5 H7 N O3' 129.114
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa
FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose
FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp
FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc
MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa
MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose
MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp
MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man
NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb
NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine
NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc
NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ILE 1 16 16 ILE ILE A . n
A 1 2 VAL 2 17 17 VAL VAL A . n
A 1 3 GLY 3 18 18 GLY GLY A . n
A 1 4 GLY 4 19 19 GLY GLY A . n
A 1 5 ILE 5 20 20 ILE ILE A . n
A 1 6 GLU 6 21 21 GLU GLU A . n
A 1 7 ALA 7 22 22 ALA ALA A . n
A 1 8 ARG 8 23 23 ARG ARG A . n
A 1 9 PRO 9 24 24 PRO PRO A . n
A 1 10 TYR 10 25 25 TYR TYR A . n
A 1 11 GLU 11 26 26 GLU GLU A . n
A 1 12 PHE 12 27 27 PHE PHE A . n
A 1 13 PRO 13 28 28 PRO PRO A . n
A 1 14 TRP 14 29 29 TRP TRP A . n
A 1 15 GLN 15 30 30 GLN GLN A . n
A 1 16 VAL 16 31 31 VAL VAL A . n
A 1 17 SER 17 32 32 SER SER A . n
A 1 18 VAL 18 33 33 VAL VAL A . n
A 1 19 ARG 19 34 34 ARG ARG A . n
A 1 20 ARG 20 35 35 ARG ARG A . n
A 1 21 LYS 21 36 36 LYS LYS A . n
A 1 22 SER 22 37 37 SER SER A . n
A 1 23 SER 23 37 37 SER SER A A n
A 1 24 ASP 24 38 38 ASP ASP A . n
A 1 25 SER 25 39 39 SER SER A . n
A 1 26 HIS 26 40 40 HIS HIS A . n
A 1 27 PHE 27 41 41 PHE PHE A . n
A 1 28 CYS 28 42 42 CYS CYS A . n
A 1 29 GLY 29 43 43 GLY GLY A . n
A 1 30 GLY 30 44 44 GLY GLY A . n
A 1 31 SER 31 45 45 SER SER A . n
A 1 32 ILE 32 46 46 ILE ILE A . n
A 1 33 ILE 33 47 47 ILE ILE A . n
A 1 34 ASN 34 48 48 ASN ASN A . n
A 1 35 ASP 35 49 49 ASP ASP A . n
A 1 36 ARG 36 50 50 ARG ARG A . n
A 1 37 TRP 37 51 51 TRP TRP A . n
A 1 38 VAL 38 52 52 VAL VAL A . n
A 1 39 VAL 39 53 53 VAL VAL A . n
A 1 40 CYS 40 54 54 CYS CYS A . n
A 1 41 ALA 41 55 55 ALA ALA A . n
A 1 42 ALA 42 56 56 ALA ALA A . n
A 1 43 HIS 43 57 57 HIS HIS A . n
A 1 44 CYS 44 58 58 CYS CYS A . n
A 1 45 MET 45 59 59 MET MET A . n
A 1 46 GLN 46 60 60 GLN GLN A . n
A 1 47 GLY 47 60 60 GLY GLY A A n
A 1 48 GLU 48 60 60 GLU GLU A B n
A 1 49 ALA 49 60 60 ALA ALA A C n
A 1 50 PRO 50 61 61 PRO PRO A . n
A 1 51 ALA 51 62 62 ALA ALA A . n
A 1 52 LEU 52 63 63 LEU LEU A . n
A 1 53 VAL 53 64 64 VAL VAL A . n
A 1 54 SER 54 65 65 SER SER A . n
A 1 55 LEU 55 66 66 LEU LEU A . n
A 1 56 VAL 56 67 67 VAL VAL A . n
A 1 57 VAL 57 68 68 VAL VAL A . n
A 1 58 GLY 58 69 69 GLY GLY A . n
A 1 59 GLU 59 70 70 GLU GLU A . n
A 1 60 HIS 60 71 71 HIS HIS A . n
A 1 61 ASP 61 72 72 ASP ASP A . n
A 1 62 SER 62 73 73 SER SER A . n
A 1 63 SER 63 74 74 SER SER A . n
A 1 64 ALA 64 75 75 ALA ALA A . n
A 1 65 ALA 65 76 76 ALA ALA A . n
A 1 66 SER 66 77 77 SER SER A . n
A 1 67 THR 67 78 78 THR THR A . n
A 1 68 VAL 68 79 79 VAL VAL A . n
A 1 69 ARG 69 80 80 ARG ARG A . n
A 1 70 GLN 70 81 81 GLN GLN A . n
A 1 71 THR 71 82 82 THR THR A . n
A 1 72 HIS 72 83 83 HIS HIS A . n
A 1 73 ASP 73 84 84 ASP ASP A . n
A 1 74 VAL 74 85 85 VAL VAL A . n
A 1 75 ASP 75 86 86 ASP ASP A . n
A 1 76 SER 76 87 87 SER SER A . n
A 1 77 ILE 77 88 88 ILE ILE A . n
A 1 78 PHE 78 89 89 PHE PHE A . n
A 1 79 VAL 79 90 90 VAL VAL A . n
A 1 80 ASN 80 91 91 ASN ASN A . n
A 1 81 GLU 81 92 92 GLU GLU A . n
A 1 82 ASN 82 93 93 ASN ASN A . n
A 1 83 TYR 83 94 94 TYR TYR A . n
A 1 84 ASP 84 95 95 ASP ASP A . n
A 1 85 PRO 85 96 96 PRO PRO A . n
A 1 86 ALA 86 97 97 ALA ALA A . n
A 1 87 THR 87 98 98 THR THR A . n
A 1 88 LEU 88 99 99 LEU LEU A . n
A 1 89 GLU 89 100 100 GLU GLU A . n
A 1 90 ASN 90 101 101 ASN ASN A . n
A 1 91 ASP 91 102 102 ASP ASP A . n
A 1 92 VAL 92 103 103 VAL VAL A . n
A 1 93 SER 93 104 104 SER SER A . n
A 1 94 VAL 94 105 105 VAL VAL A . n
A 1 95 ILE 95 106 106 ILE ILE A . n
A 1 96 LYS 96 107 107 LYS LYS A . n
A 1 97 THR 97 108 108 THR THR A . n
A 1 98 ALA 98 109 109 ALA ALA A . n
A 1 99 VAL 99 110 110 VAL VAL A . n
A 1 100 ALA 100 111 111 ALA ALA A . n
A 1 101 ILE 101 112 112 ILE ILE A . n
A 1 102 THR 102 113 113 THR THR A . n
A 1 103 PHE 103 114 114 PHE PHE A . n
A 1 104 ASP 104 115 115 ASP ASP A . n
A 1 105 ILE 105 116 116 ILE ILE A . n
A 1 106 ASN 106 117 117 ASN ASN A . n
A 1 107 VAL 107 118 118 VAL VAL A . n
A 1 108 GLY 108 119 119 GLY GLY A . n
A 1 109 PRO 109 120 120 PRO PRO A . n
A 1 110 ILE 110 121 121 ILE ILE A . n
A 1 111 CYS 111 122 122 CYS CYS A . n
A 1 112 ALA 112 123 123 ALA ALA A . n
A 1 113 PRO 113 124 124 PRO PRO A . n
A 1 114 ASP 114 125 125 ASP ASP A . n
A 1 115 PRO 115 126 126 PRO PRO A . n
A 1 116 ALA 116 127 127 ALA ALA A . n
A 1 117 ASN 117 128 128 ASN ASN A . n
A 1 118 ASP 118 129 129 ASP ASP A . n
A 1 119 TYR 119 130 130 TYR TYR A . n
A 1 120 VAL 120 131 131 VAL VAL A . n
A 1 121 TYR 121 133 133 TYR TYR A . n
A 1 122 ARG 122 134 134 ARG ARG A . n
A 1 123 LYS 123 135 135 LYS LYS A . n
A 1 124 SER 124 136 136 SER SER A . n
A 1 125 GLN 125 137 137 GLN GLN A . n
A 1 126 CYS 126 138 138 CYS CYS A . n
A 1 127 SER 127 139 139 SER SER A . n
A 1 128 GLY 128 140 140 GLY GLY A . n
A 1 129 TRP 129 141 141 TRP TRP A . n
A 1 130 GLY 130 142 142 GLY GLY A . n
A 1 131 THR 131 143 143 THR THR A . n
A 1 132 ILE 132 144 144 ILE ILE A . n
A 1 133 ASN 133 145 145 ASN ASN A . n
A 1 134 SER 134 146 146 SER SER A . n
A 1 135 GLY 135 147 147 GLY GLY A . n
A 1 136 GLY 136 148 148 GLY GLY A . n
A 1 137 VAL 137 149 149 VAL VAL A . n
A 1 138 CYS 138 150 150 CYS CYS A . n
A 1 139 CYS 139 151 151 CYS CYS A . n
A 1 140 PRO 140 152 152 PRO PRO A . n
A 1 141 ALA 141 153 153 ALA ALA A . n
A 1 142 VAL 142 154 154 VAL VAL A . n
A 1 143 LEU 143 155 155 LEU LEU A . n
A 1 144 ARG 144 156 156 ARG ARG A . n
A 1 145 TYR 145 157 157 TYR TYR A . n
A 1 146 VAL 146 158 158 VAL VAL A . n
A 1 147 THR 147 159 159 THR THR A . n
A 1 148 LEU 148 160 160 LEU LEU A . n
A 1 149 ASN 149 161 161 ASN ASN A . n
A 1 150 ILE 150 162 162 ILE ILE A . n
A 1 151 THR 151 163 163 THR THR A . n
A 1 152 THR 152 164 164 THR THR A . n
A 1 153 ASN 153 165 165 ASN ASN A . n
A 1 154 ALA 154 166 166 ALA ALA A . n
A 1 155 PHE 155 167 167 PHE PHE A . n
A 1 156 CYS 156 168 168 CYS CYS A . n
A 1 157 ASP 157 169 169 ASP ASP A . n
A 1 158 ALA 158 170 170 ALA ALA A . n
A 1 159 VAL 159 171 171 VAL VAL A . n
A 1 160 TYR 160 172 172 TYR TYR A . n
A 1 161 THR 161 173 173 THR THR A . n
A 1 162 SER 162 174 174 SER SER A . n
A 1 163 ASP 163 174 174 ASP ASP A A n
A 1 164 THR 164 175 175 THR THR A . n
A 1 165 ILE 165 176 176 ILE ILE A . n
A 1 166 TYR 166 177 177 TYR TYR A . n
A 1 167 ASP 167 178 178 ASP ASP A . n
A 1 168 ASP 168 179 179 ASP ASP A . n
A 1 169 MET 169 180 180 MET MET A . n
A 1 170 ILE 170 181 181 ILE ILE A . n
A 1 171 CYS 171 182 182 CYS CYS A . n
A 1 172 ALA 172 183 183 ALA ALA A . n
A 1 173 THR 173 184 184 THR THR A . n
A 1 174 ASP 174 185 185 ASP ASP A . n
A 1 175 ASN 175 186 186 ASN ASN A . n
A 1 176 THR 176 186 186 THR THR A A n
A 1 177 GLY 177 186 186 GLY GLY A B n
A 1 178 MET 178 186 186 MET MET A C n
A 1 179 THR 179 186 186 THR THR A D n
A 1 180 ASP 180 187 187 ASP ASP A . n
A 1 181 ARG 181 188 188 ARG ARG A . n
A 1 182 ASP 182 189 189 ASP ASP A . n
A 1 183 SER 183 190 190 SER SER A . n
A 1 184 CYS 184 191 191 CYS CYS A . n
A 1 185 GLN 185 192 192 GLN GLN A . n
A 1 186 GLY 186 193 193 GLY GLY A . n
A 1 187 ASP 187 194 194 ASP ASP A . n
A 1 188 SER 188 195 195 SER SER A . n
A 1 189 GLY 189 196 196 GLY GLY A . n
A 1 190 GLY 190 197 197 GLY GLY A . n
A 1 191 PRO 191 198 198 PRO PRO A . n
A 1 192 LEU 192 199 199 LEU LEU A . n
A 1 193 SER 193 200 200 SER SER A . n
A 1 194 VAL 194 201 201 VAL VAL A . n
A 1 195 LYS 195 202 202 LYS LYS A . n
A 1 196 ASP 196 203 203 ASP ASP A . n
A 1 197 GLY 197 204 204 GLY GLY A . n
A 1 198 SER 198 204 204 SER SER A A n
A 1 199 GLY 199 205 205 GLY GLY A . n
A 1 200 ILE 200 206 206 ILE ILE A . n
A 1 201 PHE 201 207 207 PHE PHE A . n
A 1 202 SER 202 208 208 SER SER A . n
A 1 203 LEU 203 209 209 LEU LEU A . n
A 1 204 VAL 204 210 210 VAL VAL A . n
A 1 205 GLY 205 211 211 GLY GLY A . n
A 1 206 ILE 206 212 212 ILE ILE A . n
A 1 207 VAL 207 213 213 VAL VAL A . n
A 1 208 SER 208 214 214 SER SER A . n
A 1 209 TRP 209 215 215 TRP TRP A . n
A 1 210 GLY 210 216 216 GLY GLY A . n
A 1 211 ILE 211 217 217 ILE ILE A . n
A 1 212 GLY 212 219 219 GLY GLY A . n
A 1 213 CYS 213 220 220 CYS CYS A . n
A 1 214 ALA 214 221 221 ALA ALA A . n
A 1 215 SER 215 222 222 SER SER A . n
A 1 216 GLY 216 223 223 GLY GLY A . n
A 1 217 TYR 217 224 224 TYR TYR A . n
A 1 218 PRO 218 225 225 PRO PRO A . n
A 1 219 GLY 219 226 226 GLY GLY A . n
A 1 220 VAL 220 227 227 VAL VAL A . n
A 1 221 TYR 221 228 228 TYR TYR A . n
A 1 222 SER 222 229 229 SER SER A . n
A 1 223 ARG 223 230 230 ARG ARG A . n
A 1 224 VAL 224 231 231 VAL VAL A . n
A 1 225 GLY 225 232 232 GLY GLY A . n
A 1 226 PHE 226 233 233 PHE PHE A . n
A 1 227 HIS 227 234 234 HIS HIS A . n
A 1 228 ALA 228 235 235 ALA ALA A . n
A 1 229 GLY 229 236 236 GLY GLY A . n
A 1 230 TRP 230 237 237 TRP TRP A . n
A 1 231 ILE 231 238 238 ILE ILE A . n
A 1 232 THR 232 239 239 THR THR A . n
A 1 233 ASP 233 240 240 ASP ASP A . n
A 1 234 THR 234 241 241 THR THR A . n
A 1 235 ILE 235 242 242 ILE ILE A . n
A 1 236 THR 236 243 243 THR THR A . n
A 1 237 ASN 237 244 244 ASN ASN A . n
A 1 238 ASN 238 245 245 ASN ASN A . n
B 2 1 PCA 1 1 1 PCA PCA B J n
B 2 2 PRO 2 1 1 PRO PRO B I n
B 2 3 PRO 3 1 1 PRO PRO B H n
B 2 4 VAL 4 1 1 VAL VAL B G n
B 2 5 TRP 5 1 1 TRP TRP B F n
B 2 6 TYR 6 1 1 TYR TYR B E n
B 2 7 PRO 7 1 1 PRO PRO B D n
B 2 8 GLY 8 1 1 GLY GLY B C n
B 2 9 GLY 9 1 1 GLY GLY B B n
B 2 10 GLN 10 1 1 GLN GLN B A n
B 2 11 CYS 11 1 1 CYS CYS B . n
B 2 12 GLY 12 2 2 GLY GLY B . n
B 2 13 VAL 13 3 3 VAL VAL B . n
B 2 14 SER 14 4 4 SER SER B . n
B 2 15 GLN 15 5 5 GLN GLN B . n
B 2 16 TYR 16 6 6 TYR TYR B . n
B 2 17 SER 17 7 7 SER SER B . n
B 2 18 ASP 18 8 8 ASP ASP B . n
B 2 19 ALA 19 9 9 ALA ALA B . n
B 2 20 GLY 20 10 10 GLY GLY B . n
B 2 21 ASP 21 11 11 ASP ASP B . n
B 2 22 MET 22 12 12 MET MET B . n
B 2 23 GLU 23 13 13 GLU GLU B . n
B 2 24 LEU 24 13 13 LEU LEU B A n
B 2 25 PRO 25 13 13 PRO PRO B B n
B 2 26 PRO 26 13 13 PRO PRO B C n
B 2 27 GLY 27 13 13 GLY GLY B D n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
C 3 NAG 1 C NAG 1 C NAG 1 n
C 3 NAG 2 C NAG 2 C NAG 4 n
C 3 MAN 3 C MAN 3 C MAN 5 n
C 3 MAN 4 C MAN 4 C MAN 6 n
C 3 FUC 5 C FUC 5 C FUC 2 n
C 3 FUC 6 C FUC 6 C FUC 3 n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 MG 1 401 401 MG MG2 A .
E 4 MG 1 402 402 MG MG2 A .
F 4 MG 1 403 403 MG MG2 A .
G 5 SO4 1 501 501 SO4 SO4 A .
H 5 SO4 1 502 502 SO4 SO4 A .
I 6 HOH 1 503 1 HOH TIP A .
I 6 HOH 2 504 2 HOH TIP A .
I 6 HOH 3 505 3 HOH TIP A .
I 6 HOH 4 506 4 HOH TIP A .
I 6 HOH 5 507 5 HOH TIP A .
I 6 HOH 6 508 6 HOH TIP A .
I 6 HOH 7 509 7 HOH TIP A .
I 6 HOH 8 510 8 HOH TIP A .
I 6 HOH 9 511 9 HOH TIP A .
I 6 HOH 10 512 10 HOH TIP A .
I 6 HOH 11 513 12 HOH TIP A .
I 6 HOH 12 514 13 HOH TIP A .
I 6 HOH 13 515 14 HOH TIP A .
I 6 HOH 14 516 15 HOH TIP A .
I 6 HOH 15 517 16 HOH TIP A .
I 6 HOH 16 518 18 HOH TIP A .
I 6 HOH 17 519 19 HOH TIP A .
I 6 HOH 18 520 20 HOH TIP A .
I 6 HOH 19 521 21 HOH TIP A .
I 6 HOH 20 522 22 HOH TIP A .
I 6 HOH 21 523 23 HOH TIP A .
I 6 HOH 22 524 24 HOH TIP A .
I 6 HOH 23 525 25 HOH TIP A .
I 6 HOH 24 526 26 HOH TIP A .
I 6 HOH 25 527 27 HOH TIP A .
I 6 HOH 26 528 28 HOH TIP A .
I 6 HOH 27 529 29 HOH TIP A .
I 6 HOH 28 530 30 HOH TIP A .
I 6 HOH 29 531 32 HOH TIP A .
I 6 HOH 30 532 33 HOH TIP A .
I 6 HOH 31 533 34 HOH TIP A .
I 6 HOH 32 534 35 HOH TIP A .
I 6 HOH 33 535 36 HOH TIP A .
I 6 HOH 34 536 37 HOH TIP A .
I 6 HOH 35 537 38 HOH TIP A .
I 6 HOH 36 538 40 HOH TIP A .
I 6 HOH 37 539 42 HOH TIP A .
I 6 HOH 38 540 43 HOH TIP A .
I 6 HOH 39 541 44 HOH TIP A .
I 6 HOH 40 542 45 HOH TIP A .
I 6 HOH 41 543 46 HOH TIP A .
I 6 HOH 42 544 47 HOH TIP A .
I 6 HOH 43 545 48 HOH TIP A .
I 6 HOH 44 546 49 HOH TIP A .
I 6 HOH 45 547 50 HOH TIP A .
I 6 HOH 46 548 51 HOH TIP A .
I 6 HOH 47 549 52 HOH TIP A .
I 6 HOH 48 550 53 HOH TIP A .
I 6 HOH 49 551 54 HOH TIP A .
I 6 HOH 50 552 55 HOH TIP A .
I 6 HOH 51 553 58 HOH TIP A .
I 6 HOH 52 554 59 HOH TIP A .
I 6 HOH 53 555 60 HOH TIP A .
I 6 HOH 54 556 62 HOH TIP A .
I 6 HOH 55 557 63 HOH TIP A .
I 6 HOH 56 558 64 HOH TIP A .
I 6 HOH 57 559 66 HOH TIP A .
I 6 HOH 58 560 68 HOH TIP A .
I 6 HOH 59 561 69 HOH TIP A .
I 6 HOH 60 562 70 HOH TIP A .
I 6 HOH 61 563 71 HOH TIP A .
I 6 HOH 62 564 72 HOH TIP A .
I 6 HOH 63 565 73 HOH TIP A .
I 6 HOH 64 566 74 HOH TIP A .
I 6 HOH 65 567 75 HOH TIP A .
I 6 HOH 66 568 76 HOH TIP A .
I 6 HOH 67 569 77 HOH TIP A .
I 6 HOH 68 570 78 HOH TIP A .
I 6 HOH 69 571 79 HOH TIP A .
I 6 HOH 70 572 80 HOH TIP A .
I 6 HOH 71 573 81 HOH TIP A .
I 6 HOH 72 574 83 HOH TIP A .
I 6 HOH 73 575 84 HOH TIP A .
I 6 HOH 74 576 85 HOH TIP A .
I 6 HOH 75 577 86 HOH TIP A .
I 6 HOH 76 578 87 HOH TIP A .
I 6 HOH 77 579 88 HOH TIP A .
I 6 HOH 78 580 89 HOH TIP A .
I 6 HOH 79 581 90 HOH TIP A .
I 6 HOH 80 582 91 HOH TIP A .
I 6 HOH 81 583 92 HOH TIP A .
I 6 HOH 82 584 93 HOH TIP A .
I 6 HOH 83 585 94 HOH TIP A .
I 6 HOH 84 586 95 HOH TIP A .
I 6 HOH 85 587 96 HOH TIP A .
I 6 HOH 86 588 97 HOH TIP A .
I 6 HOH 87 589 99 HOH TIP A .
I 6 HOH 88 590 100 HOH TIP A .
I 6 HOH 89 591 101 HOH TIP A .
I 6 HOH 90 592 102 HOH TIP A .
I 6 HOH 91 593 104 HOH TIP A .
I 6 HOH 92 594 105 HOH TIP A .
I 6 HOH 93 595 106 HOH TIP A .
I 6 HOH 94 596 108 HOH TIP A .
I 6 HOH 95 597 109 HOH TIP A .
I 6 HOH 96 598 112 HOH TIP A .
I 6 HOH 97 599 114 HOH TIP A .
I 6 HOH 98 600 115 HOH TIP A .
I 6 HOH 99 601 117 HOH TIP A .
I 6 HOH 100 602 118 HOH TIP A .
I 6 HOH 101 603 119 HOH TIP A .
I 6 HOH 102 604 120 HOH TIP A .
I 6 HOH 103 605 122 HOH TIP A .
I 6 HOH 104 606 123 HOH TIP A .
I 6 HOH 105 607 124 HOH TIP A .
I 6 HOH 106 608 125 HOH TIP A .
I 6 HOH 107 609 126 HOH TIP A .
I 6 HOH 108 610 128 HOH TIP A .
I 6 HOH 109 611 129 HOH TIP A .
I 6 HOH 110 612 130 HOH TIP A .
I 6 HOH 111 613 131 HOH TIP A .
I 6 HOH 112 614 134 HOH TIP A .
I 6 HOH 113 615 135 HOH TIP A .
I 6 HOH 114 616 138 HOH TIP A .
I 6 HOH 115 617 139 HOH TIP A .
I 6 HOH 116 618 141 HOH TIP A .
I 6 HOH 117 619 142 HOH TIP A .
I 6 HOH 118 620 143 HOH TIP A .
I 6 HOH 119 621 144 HOH TIP A .
I 6 HOH 120 622 146 HOH TIP A .
I 6 HOH 121 623 147 HOH TIP A .
I 6 HOH 122 624 148 HOH TIP A .
I 6 HOH 123 625 149 HOH TIP A .
I 6 HOH 124 626 150 HOH TIP A .
I 6 HOH 125 627 151 HOH TIP A .
I 6 HOH 126 628 153 HOH TIP A .
I 6 HOH 127 629 155 HOH TIP A .
I 6 HOH 128 630 156 HOH TIP A .
I 6 HOH 129 631 157 HOH TIP A .
I 6 HOH 130 632 158 HOH TIP A .
I 6 HOH 131 633 159 HOH TIP A .
I 6 HOH 132 634 160 HOH TIP A .
I 6 HOH 133 635 161 HOH TIP A .
I 6 HOH 134 636 164 HOH TIP A .
I 6 HOH 135 637 165 HOH TIP A .
I 6 HOH 136 638 166 HOH TIP A .
I 6 HOH 137 639 168 HOH TIP A .
I 6 HOH 138 640 169 HOH TIP A .
I 6 HOH 139 641 170 HOH TIP A .
I 6 HOH 140 642 171 HOH TIP A .
I 6 HOH 141 643 172 HOH TIP A .
I 6 HOH 142 644 173 HOH TIP A .
I 6 HOH 143 645 174 HOH TIP A .
I 6 HOH 144 646 175 HOH TIP A .
I 6 HOH 145 647 176 HOH TIP A .
I 6 HOH 146 648 178 HOH TIP A .
I 6 HOH 147 649 180 HOH TIP A .
I 6 HOH 148 650 181 HOH TIP A .
I 6 HOH 149 651 182 HOH TIP A .
I 6 HOH 150 652 183 HOH TIP A .
I 6 HOH 151 653 184 HOH TIP A .
I 6 HOH 152 654 185 HOH TIP A .
I 6 HOH 153 655 186 HOH TIP A .
I 6 HOH 154 656 188 HOH TIP A .
I 6 HOH 155 657 190 HOH TIP A .
I 6 HOH 156 658 191 HOH TIP A .
I 6 HOH 157 659 192 HOH TIP A .
I 6 HOH 158 660 194 HOH TIP A .
I 6 HOH 159 661 195 HOH TIP A .
I 6 HOH 160 662 196 HOH TIP A .
I 6 HOH 161 663 197 HOH TIP A .
I 6 HOH 162 664 198 HOH TIP A .
I 6 HOH 163 665 199 HOH TIP A .
I 6 HOH 164 666 200 HOH TIP A .
I 6 HOH 165 667 202 HOH TIP A .
I 6 HOH 166 668 204 HOH TIP A .
I 6 HOH 167 669 205 HOH TIP A .
I 6 HOH 168 670 206 HOH TIP A .
I 6 HOH 169 671 207 HOH TIP A .
I 6 HOH 170 672 209 HOH TIP A .
I 6 HOH 171 673 210 HOH TIP A .
I 6 HOH 172 674 211 HOH TIP A .
I 6 HOH 173 675 212 HOH TIP A .
I 6 HOH 174 676 213 HOH TIP A .
I 6 HOH 175 677 214 HOH TIP A .
I 6 HOH 176 678 215 HOH TIP A .
I 6 HOH 177 679 217 HOH TIP A .
I 6 HOH 178 680 218 HOH TIP A .
I 6 HOH 179 681 219 HOH TIP A .
I 6 HOH 180 682 222 HOH TIP A .
I 6 HOH 181 683 223 HOH TIP A .
I 6 HOH 182 684 225 HOH TIP A .
I 6 HOH 183 685 226 HOH TIP A .
I 6 HOH 184 686 227 HOH TIP A .
I 6 HOH 185 687 228 HOH TIP A .
I 6 HOH 186 688 229 HOH TIP A .
I 6 HOH 187 689 230 HOH TIP A .
I 6 HOH 188 690 232 HOH TIP A .
I 6 HOH 189 691 233 HOH TIP A .
I 6 HOH 190 692 234 HOH TIP A .
I 6 HOH 191 693 235 HOH TIP A .
I 6 HOH 192 694 236 HOH TIP A .
I 6 HOH 193 695 237 HOH TIP A .
I 6 HOH 194 696 238 HOH TIP A .
I 6 HOH 195 697 239 HOH TIP A .
I 6 HOH 196 698 241 HOH TIP A .
I 6 HOH 197 699 242 HOH TIP A .
I 6 HOH 198 700 243 HOH TIP A .
I 6 HOH 199 701 244 HOH TIP A .
I 6 HOH 200 702 245 HOH TIP A .
I 6 HOH 201 703 247 HOH TIP A .
I 6 HOH 202 704 248 HOH TIP A .
I 6 HOH 203 705 249 HOH TIP A .
I 6 HOH 204 706 250 HOH TIP A .
I 6 HOH 205 707 254 HOH TIP A .
I 6 HOH 206 708 255 HOH TIP A .
I 6 HOH 207 709 257 HOH TIP A .
I 6 HOH 208 710 258 HOH TIP A .
I 6 HOH 209 711 259 HOH TIP A .
I 6 HOH 210 712 260 HOH TIP A .
I 6 HOH 211 713 262 HOH TIP A .
I 6 HOH 212 714 264 HOH TIP A .
I 6 HOH 213 715 265 HOH TIP A .
I 6 HOH 214 716 266 HOH TIP A .
I 6 HOH 215 717 268 HOH TIP A .
I 6 HOH 216 718 269 HOH TIP A .
I 6 HOH 217 719 270 HOH TIP A .
I 6 HOH 218 720 272 HOH TIP A .
I 6 HOH 219 721 273 HOH TIP A .
I 6 HOH 220 722 274 HOH TIP A .
I 6 HOH 221 723 275 HOH TIP A .
I 6 HOH 222 724 276 HOH TIP A .
I 6 HOH 223 725 277 HOH TIP A .
I 6 HOH 224 726 279 HOH TIP A .
I 6 HOH 225 727 280 HOH TIP A .
I 6 HOH 226 728 282 HOH TIP A .
I 6 HOH 227 729 283 HOH TIP A .
I 6 HOH 228 730 285 HOH TIP A .
J 6 HOH 1 14 11 HOH TIP B .
J 6 HOH 2 15 17 HOH TIP B .
J 6 HOH 3 16 31 HOH TIP B .
J 6 HOH 4 17 39 HOH TIP B .
J 6 HOH 5 18 67 HOH TIP B .
J 6 HOH 6 19 82 HOH TIP B .
J 6 HOH 7 20 113 HOH TIP B .
J 6 HOH 8 21 127 HOH TIP B .
J 6 HOH 9 22 137 HOH TIP B .
J 6 HOH 10 23 162 HOH TIP B .
J 6 HOH 11 24 167 HOH TIP B .
J 6 HOH 12 25 179 HOH TIP B .
J 6 HOH 13 26 189 HOH TIP B .
J 6 HOH 14 27 201 HOH TIP B .
J 6 HOH 15 28 203 HOH TIP B .
J 6 HOH 16 29 216 HOH TIP B .
J 6 HOH 17 30 221 HOH TIP B .
J 6 HOH 18 31 224 HOH TIP B .
J 6 HOH 19 32 240 HOH TIP B .
J 6 HOH 20 33 252 HOH TIP B .
J 6 HOH 21 34 253 HOH TIP B .
J 6 HOH 22 35 256 HOH TIP B .
J 6 HOH 23 36 271 HOH TIP B .
J 6 HOH 24 37 278 HOH TIP B .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
DENZO 'data reduction' . ? 1
SCALEPACK 'data scaling' . ? 2
MOLREP phasing . ? 3
CNS refinement . ? 4
#
_cell.entry_id 1YM0
_cell.length_a 96.353
_cell.length_b 96.353
_cell.length_c 150.809
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1YM0
_symmetry.space_group_name_H-M 'P 63 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 182
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 1YM0
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 3.4
_exptl_crystal.density_percent_sol 63.8
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 285
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.7
_exptl_crystal_grow.pdbx_details 'magnesium sulfate, MES, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 285K'
_exptl_crystal_grow.pdbx_pH_range .
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type 'RIGAKU RAXIS IV'
_diffrn_detector.pdbx_collection_date 2002-11-30
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.000
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-6B'
_diffrn_source.pdbx_synchrotron_site 'Photon Factory'
_diffrn_source.pdbx_synchrotron_beamline BL-6B
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.000
#
_reflns.entry_id 1YM0
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.d_resolution_high 2.06
_reflns.d_resolution_low 100
_reflns.number_all 26323
_reflns.number_obs 26323
_reflns.percent_possible_obs 100
_reflns.pdbx_Rmerge_I_obs 0.127
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate 23.88
_reflns.pdbx_redundancy 14.46
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 2.06
_reflns_shell.d_res_low 2.13
_reflns_shell.percent_possible_all 100
_reflns_shell.Rmerge_I_obs 0.492
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 6.5
_reflns_shell.pdbx_redundancy ?
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 26291
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 1YM0
_refine.ls_d_res_high 2.06
_refine.ls_d_res_low 48.2
_refine.pdbx_ls_sigma_F 0
_refine.pdbx_ls_sigma_I ?
_refine.ls_number_reflns_all 26291
_refine.ls_number_reflns_obs 25660
_refine.ls_number_reflns_R_free 1509
_refine.ls_percent_reflns_obs 97.6
_refine.ls_R_factor_all 0.195
_refine.ls_R_factor_obs 0.181
_refine.ls_R_factor_R_work 0.181
_refine.ls_R_factor_R_free 0.192
_refine.ls_redundancy_reflns_obs ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 'PDB ENTRY 4CHA'
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_stereochemistry_target_values 'Engh & Huber'
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.pdbx_isotropic_thermal_model Isotropic
_refine.B_iso_mean 23.3
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.details ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_SU_B ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 1YM0
_refine_analyze.Luzzati_coordinate_error_obs 0.20
_refine_analyze.Luzzati_sigma_a_obs 0.13
_refine_analyze.Luzzati_d_res_low_obs 5.0
_refine_analyze.Luzzati_coordinate_error_free 0.23
_refine_analyze.Luzzati_sigma_a_free 0.17
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.pdbx_Luzzati_d_res_high_obs ?
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1972
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 83
_refine_hist.number_atoms_solvent 252
_refine_hist.number_atoms_total 2307
_refine_hist.d_res_high 2.06
_refine_hist.d_res_low 48.2
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ?
c_angle_deg 1.359 ? ? ? 'X-RAY DIFFRACTION' ?
c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used ?
_refine_ls_shell.d_res_high 2.06
_refine_ls_shell.d_res_low 2.13
_refine_ls_shell.number_reflns_R_work ?
_refine_ls_shell.R_factor_R_work 0.2305
_refine_ls_shell.percent_reflns_obs 100
_refine_ls_shell.R_factor_R_free 0.1968
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 153
_refine_ls_shell.number_reflns_obs 2410
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.R_factor_all ?
#
_database_PDB_matrix.entry_id 1YM0
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1YM0
_struct.title
'Crystal Structure of Earthworm Fibrinolytic Enzyme Component B: a Novel, Glycosylated Two-chained Trypsin'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1YM0
_struct_keywords.pdbx_keywords HYDROLASE
_struct_keywords.text 'two chains, glycosylation, pyroglutamation, eight-membered ring, cis peptide bond, hydrolase'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 4 ?
F N N 4 ?
G N N 5 ?
H N N 5 ?
I N N 6 ?
J N N 6 ?
#
loop_
_struct_ref.id
_struct_ref.entity_id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
1 1 UNP Q3HR18_EISFO Q3HR18 ? ? ?
2 2 PDB 1YM0 1YM0 ? ? ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1YM0 A 1 ? 238 ? Q3HR18 8 ? 245 ? 16 245
2 2 1YM0 B 1 J 27 D 1YM0 1 ? 13 ? 1 13
#
loop_
_pdbx_struct_assembly.id
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
1 author_and_software_defined_assembly PISA dimeric 2
2 software_defined_assembly PISA tetrameric 4
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 4860 ?
1 MORE -35 ?
1 'SSA (A^2)' 10700 ?
2 'ABSA (A^2)' 11190 ?
2 MORE -93 ?
2 'SSA (A^2)' 19930 ?
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B,C,D,E,F,G,H,I,J
2 1,2 A,B,C,D,E,F,G,H,I,J
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 9_765 -x+2,-x+y+1,-z -0.5000000000 -0.8660254038 0.0000000000 144.5295000000 -0.8660254038
0.5000000000 0.0000000000 83.4441457308 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
_struct_biol.id 1
_struct_biol.details 'The biological assembly is a monomer'
_struct_biol.pdbx_parent_biol_id ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 ALA A 41 ? GLN A 46 ? ALA A 55 GLN A 60 1 ? 6
HELX_P HELX_P2 2 ALA A 49 C ALA A 51 ? ALA A 60 ALA A 62 5 ? 3
HELX_P HELX_P3 3 THR A 152 ? TYR A 160 ? THR A 164 TYR A 172 1 ? 9
HELX_P HELX_P4 4 VAL A 224 ? ASN A 237 ? VAL A 231 ASN A 244 1 ? 14
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 44 SG ? ? A CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? 2.037 ? ?
disulf2 disulf ? ? A CYS 111 SG ? ? ? 1_555 B CYS 11 SG ? ? A CYS 122 B CYS 1 1_555 ? ? ? ? ? ? ? 2.034 ? ?
disulf3 disulf ? ? A CYS 138 SG ? ? ? 1_555 A CYS 139 SG ? ? A CYS 150 A CYS 151 1_555 ? ? ? ? ? ? ? 2.025 ? ?
disulf4 disulf ? ? A CYS 156 SG ? ? ? 1_555 A CYS 171 SG ? ? A CYS 168 A CYS 182 1_555 ? ? ? ? ? ? ? 2.030 ? ?
disulf5 disulf ? ? A CYS 184 SG ? ? ? 1_555 A CYS 213 SG ? ? A CYS 191 A CYS 220 1_555 ? ? ? ? ? ? ? 2.033 ? ?
covale1 covale one ? A ASN 149 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 161 C NAG 1 1_555 ? ? ? ? ? ? ? 1.448 ? N-Glycosylation
covale2 covale both ? B PRO 2 N ? I ? 1_555 B PCA 1 C ? J B PRO 1 B PCA 1 1_555 ? ? ? ? ? ? ? 1.348 ? ?
covale3 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.384 ? ?
covale4 covale both ? C NAG . O3 ? ? ? 1_555 C FUC . C1 ? ? C NAG 1 C FUC 5 1_555 ? ? ? ? ? ? ? 1.402 ? ?
covale5 covale both ? C NAG . O6 ? ? ? 1_555 C FUC . C1 ? ? C NAG 1 C FUC 6 1_555 ? ? ? ? ? ? ? 1.400 ? ?
covale6 covale both ? C NAG . O4 ? ? ? 1_555 C MAN . C1 ? ? C NAG 2 C MAN 3 1_555 ? ? ? ? ? ? ? 1.386 ? ?
covale7 covale both ? C MAN . O3 ? ? ? 1_555 C MAN . C1 ? ? C MAN 3 C MAN 4 1_555 ? ? ? ? ? ? ? 1.404 ? ?
metalc1 metalc ? ? A ASP 157 O ? ? ? 1_555 E MG . MG ? ? A ASP 169 A MG 402 1_555 ? ? ? ? ? ? ? 2.431 ? ?
metalc2 metalc ? ? A ASP 157 OD1 ? ? ? 1_555 E MG . MG ? ? A ASP 169 A MG 402 1_555 ? ? ? ? ? ? ? 2.197 ? ?
metalc3 metalc ? ? A TYR 160 O ? ? ? 1_555 E MG . MG ? ? A TYR 172 A MG 402 1_555 ? ? ? ? ? ? ? 2.428 ? ?
metalc4 metalc ? ? A ASP 163 O ? A ? 1_555 E MG . MG ? ? A ASP 174 A MG 402 1_555 ? ? ? ? ? ? ? 2.041 ? ?
metalc5 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 401 A HOH 503 1_555 ? ? ? ? ? ? ? 2.109 ? ?
metalc6 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 401 A HOH 504 1_555 ? ? ? ? ? ? ? 2.022 ? ?
metalc7 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 401 A HOH 505 1_555 ? ? ? ? ? ? ? 2.099 ? ?
metalc8 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 401 A HOH 506 1_555 ? ? ? ? ? ? ? 2.103 ? ?
metalc9 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 401 A HOH 507 1_555 ? ? ? ? ? ? ? 1.994 ? ?
metalc10 metalc ? ? D MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 401 A HOH 508 1_555 ? ? ? ? ? ? ? 2.066 ? ?
metalc11 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 403 A HOH 572 1_555 ? ? ? ? ? ? ? 2.504 ? ?
metalc12 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 403 A HOH 599 1_555 ? ? ? ? ? ? ? 2.367 ? ?
metalc13 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 403 A HOH 624 1_555 ? ? ? ? ? ? ? 2.137 ? ?
metalc14 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 403 A HOH 625 1_555 ? ? ? ? ? ? ? 1.951 ? ?
metalc15 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 403 A HOH 626 1_555 ? ? ? ? ? ? ? 2.052 ? ?
metalc16 metalc ? ? F MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 403 A HOH 627 1_555 ? ? ? ? ? ? ? 1.930 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
metalc ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 O ? A ASP 157 ? A ASP 169 ? 1_555 MG ? E MG . ? A MG 402 ? 1_555 OD1 ? A ASP 157 ? A ASP 169 ? 1_555 88.6 ?
2 O ? A ASP 157 ? A ASP 169 ? 1_555 MG ? E MG . ? A MG 402 ? 1_555 O ? A TYR 160 ? A TYR 172 ? 1_555 82.8 ?
3 OD1 ? A ASP 157 ? A ASP 169 ? 1_555 MG ? E MG . ? A MG 402 ? 1_555 O ? A TYR 160 ? A TYR 172 ? 1_555 165.2 ?
4 O ? A ASP 157 ? A ASP 169 ? 1_555 MG ? E MG . ? A MG 402 ? 1_555 O ? A ASP 163 ? A ASP 174 A 1_555 150.1 ?
5 OD1 ? A ASP 157 ? A ASP 169 ? 1_555 MG ? E MG . ? A MG 402 ? 1_555 O ? A ASP 163 ? A ASP 174 A 1_555 102.8 ?
6 O ? A TYR 160 ? A TYR 172 ? 1_555 MG ? E MG . ? A MG 402 ? 1_555 O ? A ASP 163 ? A ASP 174 A 1_555 79.6 ?
7 O ? I HOH . ? A HOH 503 ? 1_555 MG ? D MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 504 ? 1_555 90.7 ?
8 O ? I HOH . ? A HOH 503 ? 1_555 MG ? D MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 505 ? 1_555 85.9 ?
9 O ? I HOH . ? A HOH 504 ? 1_555 MG ? D MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 505 ? 1_555 175.0 ?
10 O ? I HOH . ? A HOH 503 ? 1_555 MG ? D MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 506 ? 1_555 88.7 ?
11 O ? I HOH . ? A HOH 504 ? 1_555 MG ? D MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 506 ? 1_555 92.9 ?
12 O ? I HOH . ? A HOH 505 ? 1_555 MG ? D MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 506 ? 1_555 90.7 ?
13 O ? I HOH . ? A HOH 503 ? 1_555 MG ? D MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 507 ? 1_555 84.0 ?
14 O ? I HOH . ? A HOH 504 ? 1_555 MG ? D MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 507 ? 1_555 89.9 ?
15 O ? I HOH . ? A HOH 505 ? 1_555 MG ? D MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 507 ? 1_555 86.0 ?
16 O ? I HOH . ? A HOH 506 ? 1_555 MG ? D MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 507 ? 1_555 172.2 ?
17 O ? I HOH . ? A HOH 503 ? 1_555 MG ? D MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 508 ? 1_555 177.5 ?
18 O ? I HOH . ? A HOH 504 ? 1_555 MG ? D MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 508 ? 1_555 91.2 ?
19 O ? I HOH . ? A HOH 505 ? 1_555 MG ? D MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 508 ? 1_555 92.0 ?
20 O ? I HOH . ? A HOH 506 ? 1_555 MG ? D MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 508 ? 1_555 92.8 ?
21 O ? I HOH . ? A HOH 507 ? 1_555 MG ? D MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 508 ? 1_555 94.4 ?
22 O ? I HOH . ? A HOH 572 ? 1_555 MG ? F MG . ? A MG 403 ? 1_555 O ? I HOH . ? A HOH 599 ? 1_555 73.2 ?
23 O ? I HOH . ? A HOH 572 ? 1_555 MG ? F MG . ? A MG 403 ? 1_555 O ? I HOH . ? A HOH 624 ? 1_555 82.6 ?
24 O ? I HOH . ? A HOH 599 ? 1_555 MG ? F MG . ? A MG 403 ? 1_555 O ? I HOH . ? A HOH 624 ? 1_555 80.8 ?
25 O ? I HOH . ? A HOH 572 ? 1_555 MG ? F MG . ? A MG 403 ? 1_555 O ? I HOH . ? A HOH 625 ? 1_555 94.2 ?
26 O ? I HOH . ? A HOH 599 ? 1_555 MG ? F MG . ? A MG 403 ? 1_555 O ? I HOH . ? A HOH 625 ? 1_555 165.1 ?
27 O ? I HOH . ? A HOH 624 ? 1_555 MG ? F MG . ? A MG 403 ? 1_555 O ? I HOH . ? A HOH 625 ? 1_555 89.7 ?
28 O ? I HOH . ? A HOH 572 ? 1_555 MG ? F MG . ? A MG 403 ? 1_555 O ? I HOH . ? A HOH 626 ? 1_555 85.3 ?
29 O ? I HOH . ? A HOH 599 ? 1_555 MG ? F MG . ? A MG 403 ? 1_555 O ? I HOH . ? A HOH 626 ? 1_555 87.0 ?
30 O ? I HOH . ? A HOH 624 ? 1_555 MG ? F MG . ? A MG 403 ? 1_555 O ? I HOH . ? A HOH 626 ? 1_555 164.8 ?
31 O ? I HOH . ? A HOH 625 ? 1_555 MG ? F MG . ? A MG 403 ? 1_555 O ? I HOH . ? A HOH 626 ? 1_555 100.4 ?
32 O ? I HOH . ? A HOH 572 ? 1_555 MG ? F MG . ? A MG 403 ? 1_555 O ? I HOH . ? A HOH 627 ? 1_555 154.0 ?
33 O ? I HOH . ? A HOH 599 ? 1_555 MG ? F MG . ? A MG 403 ? 1_555 O ? I HOH . ? A HOH 627 ? 1_555 82.7 ?
34 O ? I HOH . ? A HOH 624 ? 1_555 MG ? F MG . ? A MG 403 ? 1_555 O ? I HOH . ? A HOH 627 ? 1_555 84.1 ?
35 O ? I HOH . ? A HOH 625 ? 1_555 MG ? F MG . ? A MG 403 ? 1_555 O ? I HOH . ? A HOH 627 ? 1_555 107.9 ?
36 O ? I HOH . ? A HOH 626 ? 1_555 MG ? F MG . ? A MG 403 ? 1_555 O ? I HOH . ? A HOH 627 ? 1_555 103.3 ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 PCA B 1 ? . . . . PCA B 1 J 1_555 . . . . . . . GLN 1 PCA 'Pyrrolidone carboxylic acid'
'Named protein modification'
2 NAG C . ? ASN A 149 ? NAG C 1 ? 1_555 ASN A 161 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
3 CYS A 28 ? CYS A 44 ? CYS A 42 ? 1_555 CYS A 58 ? 1_555 SG SG . . . None 'Disulfide bridge'
4 CYS A 111 ? CYS B 11 ? CYS A 122 ? 1_555 CYS B 1 ? 1_555 SG SG . . . None 'Disulfide bridge'
5 CYS A 138 ? CYS A 139 ? CYS A 150 ? 1_555 CYS A 151 ? 1_555 SG SG . . . None 'Disulfide bridge'
6 CYS A 156 ? CYS A 171 ? CYS A 168 ? 1_555 CYS A 182 ? 1_555 SG SG . . . None 'Disulfide bridge'
7 CYS A 184 ? CYS A 213 ? CYS A 191 ? 1_555 CYS A 220 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
_struct_mon_prot_cis.pdbx_id 1
_struct_mon_prot_cis.label_comp_id CYS
_struct_mon_prot_cis.label_seq_id 138
_struct_mon_prot_cis.label_asym_id A
_struct_mon_prot_cis.label_alt_id .
_struct_mon_prot_cis.pdbx_PDB_ins_code ?
_struct_mon_prot_cis.auth_comp_id CYS
_struct_mon_prot_cis.auth_seq_id 150
_struct_mon_prot_cis.auth_asym_id A
_struct_mon_prot_cis.pdbx_label_comp_id_2 CYS
_struct_mon_prot_cis.pdbx_label_seq_id_2 139
_struct_mon_prot_cis.pdbx_label_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_ins_code_2 ?
_struct_mon_prot_cis.pdbx_auth_comp_id_2 CYS
_struct_mon_prot_cis.pdbx_auth_seq_id_2 151
_struct_mon_prot_cis.pdbx_auth_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_model_num 1
_struct_mon_prot_cis.pdbx_omega_angle 0.13
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 8 ?
B ? 7 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
A 3 4 ? anti-parallel
A 4 5 ? anti-parallel
A 5 6 ? anti-parallel
A 6 7 ? anti-parallel
A 7 8 ? anti-parallel
B 1 2 ? anti-parallel
B 2 3 ? anti-parallel
B 3 4 ? anti-parallel
B 4 5 ? anti-parallel
B 5 6 ? anti-parallel
B 6 7 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 ILE A 5 ? GLU A 6 ? ILE A 20 GLU A 21
A 2 ARG A 144 ? ILE A 150 ? ARG A 156 ILE A 162
A 3 MET A 169 ? THR A 173 ? MET A 180 THR A 184
A 4 GLY A 219 ? ARG A 223 ? GLY A 226 ARG A 230
A 5 PHE A 201 ? TRP A 209 ? PHE A 207 TRP A 215
A 6 PRO A 191 ? LYS A 195 ? PRO A 198 LYS A 202
A 7 LYS A 123 ? GLY A 128 ? LYS A 135 GLY A 140
A 8 ARG A 144 ? ILE A 150 ? ARG A 156 ILE A 162
B 1 GLN A 15 ? ARG A 20 ? GLN A 30 ARG A 35
B 2 SER A 25 ? ASN A 34 ? SER A 39 ASN A 48
B 3 TRP A 37 ? CYS A 40 ? TRP A 51 CYS A 54
B 4 SER A 93 ? THR A 97 ? SER A 104 THR A 108
B 5 GLN A 70 ? VAL A 79 ? GLN A 81 VAL A 90
B 6 VAL A 53 ? VAL A 57 ? VAL A 64 VAL A 68
B 7 GLN A 15 ? ARG A 20 ? GLN A 30 ARG A 35
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N ILE A 5 ? N ILE A 20 O TYR A 145 ? O TYR A 157
A 2 3 N ASN A 149 ? N ASN A 161 O THR A 173 ? O THR A 184
A 3 4 N ILE A 170 ? N ILE A 181 O TYR A 221 ? O TYR A 228
A 4 5 O VAL A 220 ? O VAL A 227 N TRP A 209 ? N TRP A 215
A 5 6 O SER A 202 ? O SER A 208 N VAL A 194 ? N VAL A 201
A 6 7 O SER A 193 ? O SER A 200 N GLN A 125 ? N GLN A 137
A 7 8 N SER A 124 ? N SER A 136 O LEU A 148 ? O LEU A 160
B 1 2 N VAL A 18 ? N VAL A 33 O CYS A 28 ? O CYS A 42
B 2 3 N SER A 31 ? N SER A 45 O VAL A 39 ? O VAL A 53
B 3 4 N CYS A 40 ? N CYS A 54 O SER A 93 ? O SER A 104
B 4 5 O LYS A 96 ? O LYS A 107 N ASP A 75 ? N ASP A 86
B 5 6 O HIS A 72 ? O HIS A 83 N LEU A 55 ? N LEU A 66
B 6 7 O VAL A 56 ? O VAL A 67 N SER A 17 ? N SER A 32
#
_pdbx_entry_details.entry_id 1YM0
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 ASP A 49 ? ? -69.08 7.44
2 1 HIS A 71 ? ? -145.87 -72.14
3 1 ASP A 115 ? ? -160.84 -163.10
4 1 ALA A 127 ? ? -88.79 41.64
5 1 ASP A 189 ? ? 177.42 168.45
#
_pdbx_validate_chiral.id 1
_pdbx_validate_chiral.PDB_model_num 1
_pdbx_validate_chiral.auth_atom_id C1
_pdbx_validate_chiral.label_alt_id ?
_pdbx_validate_chiral.auth_asym_id C
_pdbx_validate_chiral.auth_comp_id MAN
_pdbx_validate_chiral.auth_seq_id 3
_pdbx_validate_chiral.PDB_ins_code ?
_pdbx_validate_chiral.details 'WRONG HAND'
_pdbx_validate_chiral.omega .
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A ASN 149 A ASN 161 ? ASN 'GLYCOSYLATION SITE'
2 B PCA 1 B PCA 1 J GLN 'PYROGLUTAMIC ACID'
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A SO4 502 ? H SO4 .
2 1 A HOH 726 ? I HOH .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
CYS N N N N 74
CYS CA C N R 75
CYS C C N N 76
CYS O O N N 77
CYS CB C N N 78
CYS SG S N N 79
CYS OXT O N N 80
CYS H H N N 81
CYS H2 H N N 82
CYS HA H N N 83
CYS HB2 H N N 84
CYS HB3 H N N 85
CYS HG H N N 86
CYS HXT H N N 87
FUC C1 C N R 88
FUC C2 C N S 89
FUC C3 C N R 90
FUC C4 C N S 91
FUC C5 C N S 92
FUC C6 C N N 93
FUC O1 O N N 94
FUC O2 O N N 95
FUC O3 O N N 96
FUC O4 O N N 97
FUC O5 O N N 98
FUC H1 H N N 99
FUC H2 H N N 100
FUC H3 H N N 101
FUC H4 H N N 102
FUC H5 H N N 103
FUC H61 H N N 104
FUC H62 H N N 105
FUC H63 H N N 106
FUC HO1 H N N 107
FUC HO2 H N N 108
FUC HO3 H N N 109
FUC HO4 H N N 110
GLN N N N N 111
GLN CA C N S 112
GLN C C N N 113
GLN O O N N 114
GLN CB C N N 115
GLN CG C N N 116
GLN CD C N N 117
GLN OE1 O N N 118
GLN NE2 N N N 119
GLN OXT O N N 120
GLN H H N N 121
GLN H2 H N N 122
GLN HA H N N 123
GLN HB2 H N N 124
GLN HB3 H N N 125
GLN HG2 H N N 126
GLN HG3 H N N 127
GLN HE21 H N N 128
GLN HE22 H N N 129
GLN HXT H N N 130
GLU N N N N 131
GLU CA C N S 132
GLU C C N N 133
GLU O O N N 134
GLU CB C N N 135
GLU CG C N N 136
GLU CD C N N 137
GLU OE1 O N N 138
GLU OE2 O N N 139
GLU OXT O N N 140
GLU H H N N 141
GLU H2 H N N 142
GLU HA H N N 143
GLU HB2 H N N 144
GLU HB3 H N N 145
GLU HG2 H N N 146
GLU HG3 H N N 147
GLU HE2 H N N 148
GLU HXT H N N 149
GLY N N N N 150
GLY CA C N N 151
GLY C C N N 152
GLY O O N N 153
GLY OXT O N N 154
GLY H H N N 155
GLY H2 H N N 156
GLY HA2 H N N 157
GLY HA3 H N N 158
GLY HXT H N N 159
HIS N N N N 160
HIS CA C N S 161
HIS C C N N 162
HIS O O N N 163
HIS CB C N N 164
HIS CG C Y N 165
HIS ND1 N Y N 166
HIS CD2 C Y N 167
HIS CE1 C Y N 168
HIS NE2 N Y N 169
HIS OXT O N N 170
HIS H H N N 171
HIS H2 H N N 172
HIS HA H N N 173
HIS HB2 H N N 174
HIS HB3 H N N 175
HIS HD1 H N N 176
HIS HD2 H N N 177
HIS HE1 H N N 178
HIS HE2 H N N 179
HIS HXT H N N 180
HOH O O N N 181
HOH H1 H N N 182
HOH H2 H N N 183
ILE N N N N 184
ILE CA C N S 185
ILE C C N N 186
ILE O O N N 187
ILE CB C N S 188
ILE CG1 C N N 189
ILE CG2 C N N 190
ILE CD1 C N N 191
ILE OXT O N N 192
ILE H H N N 193
ILE H2 H N N 194
ILE HA H N N 195
ILE HB H N N 196
ILE HG12 H N N 197
ILE HG13 H N N 198
ILE HG21 H N N 199
ILE HG22 H N N 200
ILE HG23 H N N 201
ILE HD11 H N N 202
ILE HD12 H N N 203
ILE HD13 H N N 204
ILE HXT H N N 205
LEU N N N N 206
LEU CA C N S 207
LEU C C N N 208
LEU O O N N 209
LEU CB C N N 210
LEU CG C N N 211
LEU CD1 C N N 212
LEU CD2 C N N 213
LEU OXT O N N 214
LEU H H N N 215
LEU H2 H N N 216
LEU HA H N N 217
LEU HB2 H N N 218
LEU HB3 H N N 219
LEU HG H N N 220
LEU HD11 H N N 221
LEU HD12 H N N 222
LEU HD13 H N N 223
LEU HD21 H N N 224
LEU HD22 H N N 225
LEU HD23 H N N 226
LEU HXT H N N 227
LYS N N N N 228
LYS CA C N S 229
LYS C C N N 230
LYS O O N N 231
LYS CB C N N 232
LYS CG C N N 233
LYS CD C N N 234
LYS CE C N N 235
LYS NZ N N N 236
LYS OXT O N N 237
LYS H H N N 238
LYS H2 H N N 239
LYS HA H N N 240
LYS HB2 H N N 241
LYS HB3 H N N 242
LYS HG2 H N N 243
LYS HG3 H N N 244
LYS HD2 H N N 245
LYS HD3 H N N 246
LYS HE2 H N N 247
LYS HE3 H N N 248
LYS HZ1 H N N 249
LYS HZ2 H N N 250
LYS HZ3 H N N 251
LYS HXT H N N 252
MAN C1 C N S 253
MAN C2 C N S 254
MAN C3 C N S 255
MAN C4 C N S 256
MAN C5 C N R 257
MAN C6 C N N 258
MAN O1 O N N 259
MAN O2 O N N 260
MAN O3 O N N 261
MAN O4 O N N 262
MAN O5 O N N 263
MAN O6 O N N 264
MAN H1 H N N 265
MAN H2 H N N 266
MAN H3 H N N 267
MAN H4 H N N 268
MAN H5 H N N 269
MAN H61 H N N 270
MAN H62 H N N 271
MAN HO1 H N N 272
MAN HO2 H N N 273
MAN HO3 H N N 274
MAN HO4 H N N 275
MAN HO6 H N N 276
MET N N N N 277
MET CA C N S 278
MET C C N N 279
MET O O N N 280
MET CB C N N 281
MET CG C N N 282
MET SD S N N 283
MET CE C N N 284
MET OXT O N N 285
MET H H N N 286
MET H2 H N N 287
MET HA H N N 288
MET HB2 H N N 289
MET HB3 H N N 290
MET HG2 H N N 291
MET HG3 H N N 292
MET HE1 H N N 293
MET HE2 H N N 294
MET HE3 H N N 295
MET HXT H N N 296
MG MG MG N N 297
NAG C1 C N R 298
NAG C2 C N R 299
NAG C3 C N R 300
NAG C4 C N S 301
NAG C5 C N R 302
NAG C6 C N N 303
NAG C7 C N N 304
NAG C8 C N N 305
NAG N2 N N N 306
NAG O1 O N N 307
NAG O3 O N N 308
NAG O4 O N N 309
NAG O5 O N N 310
NAG O6 O N N 311
NAG O7 O N N 312
NAG H1 H N N 313
NAG H2 H N N 314
NAG H3 H N N 315
NAG H4 H N N 316
NAG H5 H N N 317
NAG H61 H N N 318
NAG H62 H N N 319
NAG H81 H N N 320
NAG H82 H N N 321
NAG H83 H N N 322
NAG HN2 H N N 323
NAG HO1 H N N 324
NAG HO3 H N N 325
NAG HO4 H N N 326
NAG HO6 H N N 327
PCA N N N N 328
PCA CA C N S 329
PCA CB C N N 330
PCA CG C N N 331
PCA CD C N N 332
PCA OE O N N 333
PCA C C N N 334
PCA O O N N 335
PCA OXT O N N 336
PCA H H N N 337
PCA HA H N N 338
PCA HB2 H N N 339
PCA HB3 H N N 340
PCA HG2 H N N 341
PCA HG3 H N N 342
PCA HXT H N N 343
PHE N N N N 344
PHE CA C N S 345
PHE C C N N 346
PHE O O N N 347
PHE CB C N N 348
PHE CG C Y N 349
PHE CD1 C Y N 350
PHE CD2 C Y N 351
PHE CE1 C Y N 352
PHE CE2 C Y N 353
PHE CZ C Y N 354
PHE OXT O N N 355
PHE H H N N 356
PHE H2 H N N 357
PHE HA H N N 358
PHE HB2 H N N 359
PHE HB3 H N N 360
PHE HD1 H N N 361
PHE HD2 H N N 362
PHE HE1 H N N 363
PHE HE2 H N N 364
PHE HZ H N N 365
PHE HXT H N N 366
PRO N N N N 367
PRO CA C N S 368
PRO C C N N 369
PRO O O N N 370
PRO CB C N N 371
PRO CG C N N 372
PRO CD C N N 373
PRO OXT O N N 374
PRO H H N N 375
PRO HA H N N 376
PRO HB2 H N N 377
PRO HB3 H N N 378
PRO HG2 H N N 379
PRO HG3 H N N 380
PRO HD2 H N N 381
PRO HD3 H N N 382
PRO HXT H N N 383
SER N N N N 384
SER CA C N S 385
SER C C N N 386
SER O O N N 387
SER CB C N N 388
SER OG O N N 389
SER OXT O N N 390
SER H H N N 391
SER H2 H N N 392
SER HA H N N 393
SER HB2 H N N 394
SER HB3 H N N 395
SER HG H N N 396
SER HXT H N N 397
SO4 S S N N 398
SO4 O1 O N N 399
SO4 O2 O N N 400
SO4 O3 O N N 401
SO4 O4 O N N 402
THR N N N N 403
THR CA C N S 404
THR C C N N 405
THR O O N N 406
THR CB C N R 407
THR OG1 O N N 408
THR CG2 C N N 409
THR OXT O N N 410
THR H H N N 411
THR H2 H N N 412
THR HA H N N 413
THR HB H N N 414
THR HG1 H N N 415
THR HG21 H N N 416
THR HG22 H N N 417
THR HG23 H N N 418
THR HXT H N N 419
TRP N N N N 420
TRP CA C N S 421
TRP C C N N 422
TRP O O N N 423
TRP CB C N N 424
TRP CG C Y N 425
TRP CD1 C Y N 426
TRP CD2 C Y N 427
TRP NE1 N Y N 428
TRP CE2 C Y N 429
TRP CE3 C Y N 430
TRP CZ2 C Y N 431
TRP CZ3 C Y N 432
TRP CH2 C Y N 433
TRP OXT O N N 434
TRP H H N N 435
TRP H2 H N N 436
TRP HA H N N 437
TRP HB2 H N N 438
TRP HB3 H N N 439
TRP HD1 H N N 440
TRP HE1 H N N 441
TRP HE3 H N N 442
TRP HZ2 H N N 443
TRP HZ3 H N N 444
TRP HH2 H N N 445
TRP HXT H N N 446
TYR N N N N 447
TYR CA C N S 448
TYR C C N N 449
TYR O O N N 450
TYR CB C N N 451
TYR CG C Y N 452
TYR CD1 C Y N 453
TYR CD2 C Y N 454
TYR CE1 C Y N 455
TYR CE2 C Y N 456
TYR CZ C Y N 457
TYR OH O N N 458
TYR OXT O N N 459
TYR H H N N 460
TYR H2 H N N 461
TYR HA H N N 462
TYR HB2 H N N 463
TYR HB3 H N N 464
TYR HD1 H N N 465
TYR HD2 H N N 466
TYR HE1 H N N 467
TYR HE2 H N N 468
TYR HH H N N 469
TYR HXT H N N 470
VAL N N N N 471
VAL CA C N S 472
VAL C C N N 473
VAL O O N N 474
VAL CB C N N 475
VAL CG1 C N N 476
VAL CG2 C N N 477
VAL OXT O N N 478
VAL H H N N 479
VAL H2 H N N 480
VAL HA H N N 481
VAL HB H N N 482
VAL HG11 H N N 483
VAL HG12 H N N 484
VAL HG13 H N N 485
VAL HG21 H N N 486
VAL HG22 H N N 487
VAL HG23 H N N 488
VAL HXT H N N 489
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
CYS N CA sing N N 70
CYS N H sing N N 71
CYS N H2 sing N N 72
CYS CA C sing N N 73
CYS CA CB sing N N 74
CYS CA HA sing N N 75
CYS C O doub N N 76
CYS C OXT sing N N 77
CYS CB SG sing N N 78
CYS CB HB2 sing N N 79
CYS CB HB3 sing N N 80
CYS SG HG sing N N 81
CYS OXT HXT sing N N 82
FUC C1 C2 sing N N 83
FUC C1 O1 sing N N 84
FUC C1 O5 sing N N 85
FUC C1 H1 sing N N 86
FUC C2 C3 sing N N 87
FUC C2 O2 sing N N 88
FUC C2 H2 sing N N 89
FUC C3 C4 sing N N 90
FUC C3 O3 sing N N 91
FUC C3 H3 sing N N 92
FUC C4 C5 sing N N 93
FUC C4 O4 sing N N 94
FUC C4 H4 sing N N 95
FUC C5 C6 sing N N 96
FUC C5 O5 sing N N 97
FUC C5 H5 sing N N 98
FUC C6 H61 sing N N 99
FUC C6 H62 sing N N 100
FUC C6 H63 sing N N 101
FUC O1 HO1 sing N N 102
FUC O2 HO2 sing N N 103
FUC O3 HO3 sing N N 104
FUC O4 HO4 sing N N 105
GLN N CA sing N N 106
GLN N H sing N N 107
GLN N H2 sing N N 108
GLN CA C sing N N 109
GLN CA CB sing N N 110
GLN CA HA sing N N 111
GLN C O doub N N 112
GLN C OXT sing N N 113
GLN CB CG sing N N 114
GLN CB HB2 sing N N 115
GLN CB HB3 sing N N 116
GLN CG CD sing N N 117
GLN CG HG2 sing N N 118
GLN CG HG3 sing N N 119
GLN CD OE1 doub N N 120
GLN CD NE2 sing N N 121
GLN NE2 HE21 sing N N 122
GLN NE2 HE22 sing N N 123
GLN OXT HXT sing N N 124
GLU N CA sing N N 125
GLU N H sing N N 126
GLU N H2 sing N N 127
GLU CA C sing N N 128
GLU CA CB sing N N 129
GLU CA HA sing N N 130
GLU C O doub N N 131
GLU C OXT sing N N 132
GLU CB CG sing N N 133
GLU CB HB2 sing N N 134
GLU CB HB3 sing N N 135
GLU CG CD sing N N 136
GLU CG HG2 sing N N 137
GLU CG HG3 sing N N 138
GLU CD OE1 doub N N 139
GLU CD OE2 sing N N 140
GLU OE2 HE2 sing N N 141
GLU OXT HXT sing N N 142
GLY N CA sing N N 143
GLY N H sing N N 144
GLY N H2 sing N N 145
GLY CA C sing N N 146
GLY CA HA2 sing N N 147
GLY CA HA3 sing N N 148
GLY C O doub N N 149
GLY C OXT sing N N 150
GLY OXT HXT sing N N 151
HIS N CA sing N N 152
HIS N H sing N N 153
HIS N H2 sing N N 154
HIS CA C sing N N 155
HIS CA CB sing N N 156
HIS CA HA sing N N 157
HIS C O doub N N 158
HIS C OXT sing N N 159
HIS CB CG sing N N 160
HIS CB HB2 sing N N 161
HIS CB HB3 sing N N 162
HIS CG ND1 sing Y N 163
HIS CG CD2 doub Y N 164
HIS ND1 CE1 doub Y N 165
HIS ND1 HD1 sing N N 166
HIS CD2 NE2 sing Y N 167
HIS CD2 HD2 sing N N 168
HIS CE1 NE2 sing Y N 169
HIS CE1 HE1 sing N N 170
HIS NE2 HE2 sing N N 171
HIS OXT HXT sing N N 172
HOH O H1 sing N N 173
HOH O H2 sing N N 174
ILE N CA sing N N 175
ILE N H sing N N 176
ILE N H2 sing N N 177
ILE CA C sing N N 178
ILE CA CB sing N N 179
ILE CA HA sing N N 180
ILE C O doub N N 181
ILE C OXT sing N N 182
ILE CB CG1 sing N N 183
ILE CB CG2 sing N N 184
ILE CB HB sing N N 185
ILE CG1 CD1 sing N N 186
ILE CG1 HG12 sing N N 187
ILE CG1 HG13 sing N N 188
ILE CG2 HG21 sing N N 189
ILE CG2 HG22 sing N N 190
ILE CG2 HG23 sing N N 191
ILE CD1 HD11 sing N N 192
ILE CD1 HD12 sing N N 193
ILE CD1 HD13 sing N N 194
ILE OXT HXT sing N N 195
LEU N CA sing N N 196
LEU N H sing N N 197
LEU N H2 sing N N 198
LEU CA C sing N N 199
LEU CA CB sing N N 200
LEU CA HA sing N N 201
LEU C O doub N N 202
LEU C OXT sing N N 203
LEU CB CG sing N N 204
LEU CB HB2 sing N N 205
LEU CB HB3 sing N N 206
LEU CG CD1 sing N N 207
LEU CG CD2 sing N N 208
LEU CG HG sing N N 209
LEU CD1 HD11 sing N N 210
LEU CD1 HD12 sing N N 211
LEU CD1 HD13 sing N N 212
LEU CD2 HD21 sing N N 213
LEU CD2 HD22 sing N N 214
LEU CD2 HD23 sing N N 215
LEU OXT HXT sing N N 216
LYS N CA sing N N 217
LYS N H sing N N 218
LYS N H2 sing N N 219
LYS CA C sing N N 220
LYS CA CB sing N N 221
LYS CA HA sing N N 222
LYS C O doub N N 223
LYS C OXT sing N N 224
LYS CB CG sing N N 225
LYS CB HB2 sing N N 226
LYS CB HB3 sing N N 227
LYS CG CD sing N N 228
LYS CG HG2 sing N N 229
LYS CG HG3 sing N N 230
LYS CD CE sing N N 231
LYS CD HD2 sing N N 232
LYS CD HD3 sing N N 233
LYS CE NZ sing N N 234
LYS CE HE2 sing N N 235
LYS CE HE3 sing N N 236
LYS NZ HZ1 sing N N 237
LYS NZ HZ2 sing N N 238
LYS NZ HZ3 sing N N 239
LYS OXT HXT sing N N 240
MAN C1 C2 sing N N 241
MAN C1 O1 sing N N 242
MAN C1 O5 sing N N 243
MAN C1 H1 sing N N 244
MAN C2 C3 sing N N 245
MAN C2 O2 sing N N 246
MAN C2 H2 sing N N 247
MAN C3 C4 sing N N 248
MAN C3 O3 sing N N 249
MAN C3 H3 sing N N 250
MAN C4 C5 sing N N 251
MAN C4 O4 sing N N 252
MAN C4 H4 sing N N 253
MAN C5 C6 sing N N 254
MAN C5 O5 sing N N 255
MAN C5 H5 sing N N 256
MAN C6 O6 sing N N 257
MAN C6 H61 sing N N 258
MAN C6 H62 sing N N 259
MAN O1 HO1 sing N N 260
MAN O2 HO2 sing N N 261
MAN O3 HO3 sing N N 262
MAN O4 HO4 sing N N 263
MAN O6 HO6 sing N N 264
MET N CA sing N N 265
MET N H sing N N 266
MET N H2 sing N N 267
MET CA C sing N N 268
MET CA CB sing N N 269
MET CA HA sing N N 270
MET C O doub N N 271
MET C OXT sing N N 272
MET CB CG sing N N 273
MET CB HB2 sing N N 274
MET CB HB3 sing N N 275
MET CG SD sing N N 276
MET CG HG2 sing N N 277
MET CG HG3 sing N N 278
MET SD CE sing N N 279
MET CE HE1 sing N N 280
MET CE HE2 sing N N 281
MET CE HE3 sing N N 282
MET OXT HXT sing N N 283
NAG C1 C2 sing N N 284
NAG C1 O1 sing N N 285
NAG C1 O5 sing N N 286
NAG C1 H1 sing N N 287
NAG C2 C3 sing N N 288
NAG C2 N2 sing N N 289
NAG C2 H2 sing N N 290
NAG C3 C4 sing N N 291
NAG C3 O3 sing N N 292
NAG C3 H3 sing N N 293
NAG C4 C5 sing N N 294
NAG C4 O4 sing N N 295
NAG C4 H4 sing N N 296
NAG C5 C6 sing N N 297
NAG C5 O5 sing N N 298
NAG C5 H5 sing N N 299
NAG C6 O6 sing N N 300
NAG C6 H61 sing N N 301
NAG C6 H62 sing N N 302
NAG C7 C8 sing N N 303
NAG C7 N2 sing N N 304
NAG C7 O7 doub N N 305
NAG C8 H81 sing N N 306
NAG C8 H82 sing N N 307
NAG C8 H83 sing N N 308
NAG N2 HN2 sing N N 309
NAG O1 HO1 sing N N 310
NAG O3 HO3 sing N N 311
NAG O4 HO4 sing N N 312
NAG O6 HO6 sing N N 313
PCA N CA sing N N 314
PCA N CD sing N N 315
PCA N H sing N N 316
PCA CA CB sing N N 317
PCA CA C sing N N 318
PCA CA HA sing N N 319
PCA CB CG sing N N 320
PCA CB HB2 sing N N 321
PCA CB HB3 sing N N 322
PCA CG CD sing N N 323
PCA CG HG2 sing N N 324
PCA CG HG3 sing N N 325
PCA CD OE doub N N 326
PCA C O doub N N 327
PCA C OXT sing N N 328
PCA OXT HXT sing N N 329
PHE N CA sing N N 330
PHE N H sing N N 331
PHE N H2 sing N N 332
PHE CA C sing N N 333
PHE CA CB sing N N 334
PHE CA HA sing N N 335
PHE C O doub N N 336
PHE C OXT sing N N 337
PHE CB CG sing N N 338
PHE CB HB2 sing N N 339
PHE CB HB3 sing N N 340
PHE CG CD1 doub Y N 341
PHE CG CD2 sing Y N 342
PHE CD1 CE1 sing Y N 343
PHE CD1 HD1 sing N N 344
PHE CD2 CE2 doub Y N 345
PHE CD2 HD2 sing N N 346
PHE CE1 CZ doub Y N 347
PHE CE1 HE1 sing N N 348
PHE CE2 CZ sing Y N 349
PHE CE2 HE2 sing N N 350
PHE CZ HZ sing N N 351
PHE OXT HXT sing N N 352
PRO N CA sing N N 353
PRO N CD sing N N 354
PRO N H sing N N 355
PRO CA C sing N N 356
PRO CA CB sing N N 357
PRO CA HA sing N N 358
PRO C O doub N N 359
PRO C OXT sing N N 360
PRO CB CG sing N N 361
PRO CB HB2 sing N N 362
PRO CB HB3 sing N N 363
PRO CG CD sing N N 364
PRO CG HG2 sing N N 365
PRO CG HG3 sing N N 366
PRO CD HD2 sing N N 367
PRO CD HD3 sing N N 368
PRO OXT HXT sing N N 369
SER N CA sing N N 370
SER N H sing N N 371
SER N H2 sing N N 372
SER CA C sing N N 373
SER CA CB sing N N 374
SER CA HA sing N N 375
SER C O doub N N 376
SER C OXT sing N N 377
SER CB OG sing N N 378
SER CB HB2 sing N N 379
SER CB HB3 sing N N 380
SER OG HG sing N N 381
SER OXT HXT sing N N 382
SO4 S O1 doub N N 383
SO4 S O2 doub N N 384
SO4 S O3 sing N N 385
SO4 S O4 sing N N 386
THR N CA sing N N 387
THR N H sing N N 388
THR N H2 sing N N 389
THR CA C sing N N 390
THR CA CB sing N N 391
THR CA HA sing N N 392
THR C O doub N N 393
THR C OXT sing N N 394
THR CB OG1 sing N N 395
THR CB CG2 sing N N 396
THR CB HB sing N N 397
THR OG1 HG1 sing N N 398
THR CG2 HG21 sing N N 399
THR CG2 HG22 sing N N 400
THR CG2 HG23 sing N N 401
THR OXT HXT sing N N 402
TRP N CA sing N N 403
TRP N H sing N N 404
TRP N H2 sing N N 405
TRP CA C sing N N 406
TRP CA CB sing N N 407
TRP CA HA sing N N 408
TRP C O doub N N 409
TRP C OXT sing N N 410
TRP CB CG sing N N 411
TRP CB HB2 sing N N 412
TRP CB HB3 sing N N 413
TRP CG CD1 doub Y N 414
TRP CG CD2 sing Y N 415
TRP CD1 NE1 sing Y N 416
TRP CD1 HD1 sing N N 417
TRP CD2 CE2 doub Y N 418
TRP CD2 CE3 sing Y N 419
TRP NE1 CE2 sing Y N 420
TRP NE1 HE1 sing N N 421
TRP CE2 CZ2 sing Y N 422
TRP CE3 CZ3 doub Y N 423
TRP CE3 HE3 sing N N 424
TRP CZ2 CH2 doub Y N 425
TRP CZ2 HZ2 sing N N 426
TRP CZ3 CH2 sing Y N 427
TRP CZ3 HZ3 sing N N 428
TRP CH2 HH2 sing N N 429
TRP OXT HXT sing N N 430
TYR N CA sing N N 431
TYR N H sing N N 432
TYR N H2 sing N N 433
TYR CA C sing N N 434
TYR CA CB sing N N 435
TYR CA HA sing N N 436
TYR C O doub N N 437
TYR C OXT sing N N 438
TYR CB CG sing N N 439
TYR CB HB2 sing N N 440
TYR CB HB3 sing N N 441
TYR CG CD1 doub Y N 442
TYR CG CD2 sing Y N 443
TYR CD1 CE1 sing Y N 444
TYR CD1 HD1 sing N N 445
TYR CD2 CE2 doub Y N 446
TYR CD2 HD2 sing N N 447
TYR CE1 CZ doub Y N 448
TYR CE1 HE1 sing N N 449
TYR CE2 CZ sing Y N 450
TYR CE2 HE2 sing N N 451
TYR CZ OH sing N N 452
TYR OH HH sing N N 453
TYR OXT HXT sing N N 454
VAL N CA sing N N 455
VAL N H sing N N 456
VAL N H2 sing N N 457
VAL CA C sing N N 458
VAL CA CB sing N N 459
VAL CA HA sing N N 460
VAL C O doub N N 461
VAL C OXT sing N N 462
VAL CB CG1 sing N N 463
VAL CB CG2 sing N N 464
VAL CB HB sing N N 465
VAL CG1 HG11 sing N N 466
VAL CG1 HG12 sing N N 467
VAL CG1 HG13 sing N N 468
VAL CG2 HG21 sing N N 469
VAL CG2 HG22 sing N N 470
VAL CG2 HG23 sing N N 471
VAL OXT HXT sing N N 472
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
3 NAG 1 n
3 NAG 2 n
3 MAN 3 n
3 MAN 4 n
3 FUC 5 n
3 FUC 6 n
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 4CHA
_pdbx_initial_refinement_model.details 'PDB ENTRY 4CHA'
#
_atom_sites.entry_id 1YM0
_atom_sites.fract_transf_matrix[1][1] 0.010379
_atom_sites.fract_transf_matrix[1][2] 0.005992
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.011984
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.006631
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
MG
N
O
S
#
loop_