data_1YM9 # _entry.id 1YM9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YM9 pdb_00001ym9 10.2210/pdb1ym9/pdb RCSB RCSB031680 ? ? WWPDB D_1000031680 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1YMD 'Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfonic form' unspecified PDB 1YMK 'Crystal Structure of the CDC25B phosphatase catalytic domain in the apo form' unspecified PDB 1YML 'Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfenic form' unspecified PDB 1YS0 ;Crystal Structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the disulfide form ; unspecified # _pdbx_database_status.entry_id 1YM9 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry N _pdbx_database_status.recvd_initial_deposition_date 2005-01-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Buhrman, G.K.' 1 'Parker, B.' 2 'Sohn, J.' 3 'Rudolph, J.' 4 'Mattos, C.' 5 # _citation.id primary _citation.title 'Structural Mechanism of Oxidative Regulation of the Phosphatase Cdc25B via an Intramolecular Disulfide Bond' _citation.journal_abbrev Biochemistry _citation.journal_volume 44 _citation.page_first 5307 _citation.page_last 5316 _citation.year 2005 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15807524 _citation.pdbx_database_id_DOI '10.1021/bi047449fS0006-2960(04)07449-5' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Buhrman, G.K.' 1 ? primary 'Parker, B.' 2 ? primary 'Sohn, J.' 3 ? primary 'Rudolph, J.' 4 ? primary 'Mattos, C.' 5 ? # _cell.entry_id 1YM9 _cell.length_a 49.268 _cell.length_b 70.627 _cell.length_c 73.761 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YM9 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.cell_setting orthorhombic _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'M-phase inducer phosphatase 2' 20713.801 1 3.1.3.48 ? 'catalytic domain' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 water nat water 18.015 137 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CDC25B Phosphatase; Dual specificity phosphatase Cdc25B' # _entity_name_sys.entity_id 1 _entity_name_sys.name E.C.3.1.3.48 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLK SPIAPCSLDKRVILIFH(CSD)EFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPM NHEAFKDELKTFRLKTRSW ; _entity_poly.pdbx_seq_one_letter_code_can ;MELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLK SPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEA FKDELKTFRLKTRSW ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 LEU n 1 4 ILE n 1 5 GLY n 1 6 ASP n 1 7 TYR n 1 8 SER n 1 9 LYS n 1 10 ALA n 1 11 PHE n 1 12 LEU n 1 13 LEU n 1 14 GLN n 1 15 THR n 1 16 VAL n 1 17 ASP n 1 18 GLY n 1 19 LYS n 1 20 HIS n 1 21 GLN n 1 22 ASP n 1 23 LEU n 1 24 LYS n 1 25 TYR n 1 26 ILE n 1 27 SER n 1 28 PRO n 1 29 GLU n 1 30 THR n 1 31 MET n 1 32 VAL n 1 33 ALA n 1 34 LEU n 1 35 LEU n 1 36 THR n 1 37 GLY n 1 38 LYS n 1 39 PHE n 1 40 SER n 1 41 ASN n 1 42 ILE n 1 43 VAL n 1 44 ASP n 1 45 LYS n 1 46 PHE n 1 47 VAL n 1 48 ILE n 1 49 VAL n 1 50 ASP n 1 51 CYS n 1 52 ARG n 1 53 TYR n 1 54 PRO n 1 55 TYR n 1 56 GLU n 1 57 TYR n 1 58 GLU n 1 59 GLY n 1 60 GLY n 1 61 HIS n 1 62 ILE n 1 63 LYS n 1 64 THR n 1 65 ALA n 1 66 VAL n 1 67 ASN n 1 68 LEU n 1 69 PRO n 1 70 LEU n 1 71 GLU n 1 72 ARG n 1 73 ASP n 1 74 ALA n 1 75 GLU n 1 76 SER n 1 77 PHE n 1 78 LEU n 1 79 LEU n 1 80 LYS n 1 81 SER n 1 82 PRO n 1 83 ILE n 1 84 ALA n 1 85 PRO n 1 86 CYS n 1 87 SER n 1 88 LEU n 1 89 ASP n 1 90 LYS n 1 91 ARG n 1 92 VAL n 1 93 ILE n 1 94 LEU n 1 95 ILE n 1 96 PHE n 1 97 HIS n 1 98 CSD n 1 99 GLU n 1 100 PHE n 1 101 SER n 1 102 SER n 1 103 GLU n 1 104 ARG n 1 105 GLY n 1 106 PRO n 1 107 ARG n 1 108 MET n 1 109 CYS n 1 110 ARG n 1 111 PHE n 1 112 ILE n 1 113 ARG n 1 114 GLU n 1 115 ARG n 1 116 ASP n 1 117 ARG n 1 118 ALA n 1 119 VAL n 1 120 ASN n 1 121 ASP n 1 122 TYR n 1 123 PRO n 1 124 SER n 1 125 LEU n 1 126 TYR n 1 127 TYR n 1 128 PRO n 1 129 GLU n 1 130 MET n 1 131 TYR n 1 132 ILE n 1 133 LEU n 1 134 LYS n 1 135 GLY n 1 136 GLY n 1 137 TYR n 1 138 LYS n 1 139 GLU n 1 140 PHE n 1 141 PHE n 1 142 PRO n 1 143 GLN n 1 144 HIS n 1 145 PRO n 1 146 ASN n 1 147 PHE n 1 148 CYS n 1 149 GLU n 1 150 PRO n 1 151 GLN n 1 152 ASP n 1 153 TYR n 1 154 ARG n 1 155 PRO n 1 156 MET n 1 157 ASN n 1 158 HIS n 1 159 GLU n 1 160 ALA n 1 161 PHE n 1 162 LYS n 1 163 ASP n 1 164 GLU n 1 165 LEU n 1 166 LYS n 1 167 THR n 1 168 PHE n 1 169 ARG n 1 170 LEU n 1 171 LYS n 1 172 THR n 1 173 ARG n 1 174 SER n 1 175 TRP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'CDC25B, CDC25HU2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code MPIP2_HUMAN _struct_ref.pdbx_db_accession P30305 _struct_ref.pdbx_align_begin 391 _struct_ref.pdbx_seq_one_letter_code ;ELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKS PIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAF KDELKTFRLKTRSW ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YM9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 175 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P30305 _struct_ref_seq.db_align_beg 391 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 564 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 377 _struct_ref_seq.pdbx_auth_seq_align_end 550 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YM9 MET A 1 ? UNP P30305 ? ? 'initiating methionine' 376 1 1 1YM9 CSD A 98 ? UNP P30305 CYS 487 'modified residue' 473 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CSD 'L-peptide linking' n 3-SULFINOALANINE 'S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE' 'C3 H7 N O4 S' 153.157 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1YM9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 57.6 _exptl_crystal.density_Matthews 2.92 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.pH 7.25 _exptl_crystal_grow.pdbx_details 'DTT, Tris, Ammonium Sulfate, pH 7.25, VAPOR DIFFUSION, HANGING DROP, temperature 100.0K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 1YM9 _reflns.observed_criterion_sigma_I 0. _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35.44 _reflns.d_resolution_high 2.00 _reflns.number_obs 16387 _reflns.number_all 16387 _reflns.percent_possible_obs 91.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 23.0 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 1YM9 _refine.ls_number_reflns_obs 16387 _refine.ls_number_reflns_all 16387 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 431894.49 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.44 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 91.1 _refine.ls_R_factor_obs 0.2181 _refine.ls_R_factor_all 0.2181 _refine.ls_R_factor_R_work 0.218 _refine.ls_R_factor_R_free 0.237 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 1626 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 30.2 _refine.aniso_B[1][1] 4.30 _refine.aniso_B[2][2] -2.13 _refine.aniso_B[3][3] -2.16 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.373336 _refine.solvent_model_param_bsol 19.4377 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1QB0' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1YM9 _refine_analyze.Luzzati_coordinate_error_obs 0.24 _refine_analyze.Luzzati_sigma_a_obs 0.24 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.28 _refine_analyze.Luzzati_sigma_a_free 0.25 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1429 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 137 _refine_hist.number_atoms_total 1567 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 35.44 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.6 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.58 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.27 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.99 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.08 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.13 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 2319 _refine_ls_shell.R_factor_R_work 0.283 _refine_ls_shell.percent_reflns_obs 87.8 _refine_ls_shell.R_factor_R_free 0.306 _refine_ls_shell.R_factor_R_free_error 0.019 _refine_ls_shell.percent_reflns_R_free 9.9 _refine_ls_shell.number_reflns_R_free 254 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN3.PARAM PROTEIN3.TOP 'X-RAY DIFFRACTION' 2 ION.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1YM9 _struct.title 'Crystal structure of the CDC25B phosphatase catalytic domain with the active site cysteine in the sulfinic form' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YM9 _struct_keywords.pdbx_keywords 'HYDROLASE, CELL CYCLE' _struct_keywords.text 'Sulfinic Cysteine, HYDROLASE, CELL CYCLE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 27 ? THR A 36 ? SER A 402 THR A 411 1 ? 10 HELX_P HELX_P2 2 TYR A 53 ? GLY A 59 ? TYR A 428 GLY A 434 1 ? 7 HELX_P HELX_P3 3 LEU A 70 ? LYS A 80 ? LEU A 445 LYS A 455 1 ? 11 HELX_P HELX_P4 4 GLU A 103 ? VAL A 119 ? GLU A 478 VAL A 494 1 ? 17 HELX_P HELX_P5 5 GLY A 135 ? PHE A 141 ? GLY A 510 PHE A 516 1 ? 7 HELX_P HELX_P6 6 HIS A 144 ? ASN A 146 ? HIS A 519 ASN A 521 5 ? 3 HELX_P HELX_P7 7 HIS A 158 ? ALA A 160 ? HIS A 533 ALA A 535 5 ? 3 HELX_P HELX_P8 8 PHE A 161 ? LEU A 170 ? PHE A 536 LEU A 545 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HIS 97 C ? ? ? 1_555 A CSD 98 N ? ? A HIS 472 A CSD 473 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A CSD 98 C ? ? ? 1_555 A GLU 99 N ? ? A CSD 473 A GLU 474 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 122 A . ? TYR 497 A PRO 123 A ? PRO 498 A 1 -0.16 2 GLU 149 A . ? GLU 524 A PRO 150 A ? PRO 525 A 1 -1.01 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 25 ? ILE A 26 ? TYR A 400 ILE A 401 A 2 GLU A 129 ? LEU A 133 ? GLU A 504 LEU A 508 A 3 ARG A 91 ? HIS A 97 ? ARG A 466 HIS A 472 A 4 VAL A 43 ? ASP A 50 ? VAL A 418 ASP A 425 A 5 VAL A 66 ? ASN A 67 ? VAL A 441 ASN A 442 B 1 HIS A 61 ? ILE A 62 ? HIS A 436 ILE A 437 B 2 CYS A 148 ? GLU A 149 ? CYS A 523 GLU A 524 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 26 ? N ILE A 401 O ILE A 132 ? O ILE A 507 A 2 3 O TYR A 131 ? O TYR A 506 N PHE A 96 ? N PHE A 471 A 3 4 O ILE A 95 ? O ILE A 470 N VAL A 49 ? N VAL A 424 A 4 5 N ILE A 48 ? N ILE A 423 O VAL A 66 ? O VAL A 441 B 1 2 N HIS A 61 ? N HIS A 436 O GLU A 149 ? O GLU A 524 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CL _struct_site.pdbx_auth_seq_id 1001 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE CL A 1001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HOH C . ? HOH A 13 . ? 1_555 ? 2 AC1 4 HOH C . ? HOH A 134 . ? 1_555 ? 3 AC1 4 GLU A 71 ? GLU A 446 . ? 1_555 ? 4 AC1 4 ARG A 173 ? ARG A 548 . ? 1_555 ? # _atom_sites.entry_id 1YM9 _atom_sites.fract_transf_matrix[1][1] 0.020297 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014159 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013557 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 376 376 MET MET A . n A 1 2 GLU 2 377 377 GLU GLU A . n A 1 3 LEU 3 378 378 LEU LEU A . n A 1 4 ILE 4 379 379 ILE ILE A . n A 1 5 GLY 5 380 380 GLY GLY A . n A 1 6 ASP 6 381 381 ASP ASP A . n A 1 7 TYR 7 382 382 TYR TYR A . n A 1 8 SER 8 383 383 SER SER A . n A 1 9 LYS 9 384 384 LYS LYS A . n A 1 10 ALA 10 385 385 ALA ALA A . n A 1 11 PHE 11 386 386 PHE PHE A . n A 1 12 LEU 12 387 387 LEU LEU A . n A 1 13 LEU 13 388 388 LEU LEU A . n A 1 14 GLN 14 389 389 GLN GLN A . n A 1 15 THR 15 390 390 THR THR A . n A 1 16 VAL 16 391 391 VAL VAL A . n A 1 17 ASP 17 392 392 ASP ASP A . n A 1 18 GLY 18 393 393 GLY GLY A . n A 1 19 LYS 19 394 394 LYS LYS A . n A 1 20 HIS 20 395 395 HIS HIS A . n A 1 21 GLN 21 396 396 GLN GLN A . n A 1 22 ASP 22 397 397 ASP ASP A . n A 1 23 LEU 23 398 398 LEU LEU A . n A 1 24 LYS 24 399 399 LYS LYS A . n A 1 25 TYR 25 400 400 TYR TYR A . n A 1 26 ILE 26 401 401 ILE ILE A . n A 1 27 SER 27 402 402 SER SER A . n A 1 28 PRO 28 403 403 PRO PRO A . n A 1 29 GLU 29 404 404 GLU GLU A . n A 1 30 THR 30 405 405 THR THR A . n A 1 31 MET 31 406 406 MET MET A . n A 1 32 VAL 32 407 407 VAL VAL A . n A 1 33 ALA 33 408 408 ALA ALA A . n A 1 34 LEU 34 409 409 LEU LEU A . n A 1 35 LEU 35 410 410 LEU LEU A . n A 1 36 THR 36 411 411 THR THR A . n A 1 37 GLY 37 412 412 GLY GLY A . n A 1 38 LYS 38 413 413 LYS LYS A . n A 1 39 PHE 39 414 414 PHE PHE A . n A 1 40 SER 40 415 415 SER SER A . n A 1 41 ASN 41 416 416 ASN ASN A . n A 1 42 ILE 42 417 417 ILE ILE A . n A 1 43 VAL 43 418 418 VAL VAL A . n A 1 44 ASP 44 419 419 ASP ASP A . n A 1 45 LYS 45 420 420 LYS LYS A . n A 1 46 PHE 46 421 421 PHE PHE A . n A 1 47 VAL 47 422 422 VAL VAL A . n A 1 48 ILE 48 423 423 ILE ILE A . n A 1 49 VAL 49 424 424 VAL VAL A . n A 1 50 ASP 50 425 425 ASP ASP A . n A 1 51 CYS 51 426 426 CYS CYS A . n A 1 52 ARG 52 427 427 ARG ARG A . n A 1 53 TYR 53 428 428 TYR TYR A . n A 1 54 PRO 54 429 429 PRO PRO A . n A 1 55 TYR 55 430 430 TYR TYR A . n A 1 56 GLU 56 431 431 GLU GLU A . n A 1 57 TYR 57 432 432 TYR TYR A . n A 1 58 GLU 58 433 433 GLU GLU A . n A 1 59 GLY 59 434 434 GLY GLY A . n A 1 60 GLY 60 435 435 GLY GLY A . n A 1 61 HIS 61 436 436 HIS HIS A . n A 1 62 ILE 62 437 437 ILE ILE A . n A 1 63 LYS 63 438 438 LYS LYS A . n A 1 64 THR 64 439 439 THR THR A . n A 1 65 ALA 65 440 440 ALA ALA A . n A 1 66 VAL 66 441 441 VAL VAL A . n A 1 67 ASN 67 442 442 ASN ASN A . n A 1 68 LEU 68 443 443 LEU LEU A . n A 1 69 PRO 69 444 444 PRO PRO A . n A 1 70 LEU 70 445 445 LEU LEU A . n A 1 71 GLU 71 446 446 GLU GLU A . n A 1 72 ARG 72 447 447 ARG ARG A . n A 1 73 ASP 73 448 448 ASP ASP A . n A 1 74 ALA 74 449 449 ALA ALA A . n A 1 75 GLU 75 450 450 GLU GLU A . n A 1 76 SER 76 451 451 SER SER A . n A 1 77 PHE 77 452 452 PHE PHE A . n A 1 78 LEU 78 453 453 LEU LEU A . n A 1 79 LEU 79 454 454 LEU LEU A . n A 1 80 LYS 80 455 455 LYS LYS A . n A 1 81 SER 81 456 456 SER SER A . n A 1 82 PRO 82 457 457 PRO PRO A . n A 1 83 ILE 83 458 458 ILE ILE A . n A 1 84 ALA 84 459 459 ALA ALA A . n A 1 85 PRO 85 460 460 PRO PRO A . n A 1 86 CYS 86 461 ? ? ? A . n A 1 87 SER 87 462 ? ? ? A . n A 1 88 LEU 88 463 ? ? ? A . n A 1 89 ASP 89 464 ? ? ? A . n A 1 90 LYS 90 465 465 LYS LYS A . n A 1 91 ARG 91 466 466 ARG ARG A . n A 1 92 VAL 92 467 467 VAL VAL A . n A 1 93 ILE 93 468 468 ILE ILE A . n A 1 94 LEU 94 469 469 LEU LEU A . n A 1 95 ILE 95 470 470 ILE ILE A . n A 1 96 PHE 96 471 471 PHE PHE A . n A 1 97 HIS 97 472 472 HIS HIS A . n A 1 98 CSD 98 473 473 CSD CSD A . n A 1 99 GLU 99 474 474 GLU GLU A . n A 1 100 PHE 100 475 475 PHE PHE A . n A 1 101 SER 101 476 476 SER SER A . n A 1 102 SER 102 477 477 SER SER A . n A 1 103 GLU 103 478 478 GLU GLU A . n A 1 104 ARG 104 479 479 ARG ARG A . n A 1 105 GLY 105 480 480 GLY GLY A . n A 1 106 PRO 106 481 481 PRO PRO A . n A 1 107 ARG 107 482 482 ARG ARG A . n A 1 108 MET 108 483 483 MET MET A . n A 1 109 CYS 109 484 484 CYS CYS A . n A 1 110 ARG 110 485 485 ARG ARG A . n A 1 111 PHE 111 486 486 PHE PHE A . n A 1 112 ILE 112 487 487 ILE ILE A . n A 1 113 ARG 113 488 488 ARG ARG A . n A 1 114 GLU 114 489 489 GLU GLU A . n A 1 115 ARG 115 490 490 ARG ARG A . n A 1 116 ASP 116 491 491 ASP ASP A . n A 1 117 ARG 117 492 492 ARG ARG A . n A 1 118 ALA 118 493 493 ALA ALA A . n A 1 119 VAL 119 494 494 VAL VAL A . n A 1 120 ASN 120 495 495 ASN ASN A . n A 1 121 ASP 121 496 496 ASP ASP A . n A 1 122 TYR 122 497 497 TYR TYR A . n A 1 123 PRO 123 498 498 PRO PRO A . n A 1 124 SER 124 499 499 SER SER A . n A 1 125 LEU 125 500 500 LEU LEU A . n A 1 126 TYR 126 501 501 TYR TYR A . n A 1 127 TYR 127 502 502 TYR TYR A . n A 1 128 PRO 128 503 503 PRO PRO A . n A 1 129 GLU 129 504 504 GLU GLU A . n A 1 130 MET 130 505 505 MET MET A . n A 1 131 TYR 131 506 506 TYR TYR A . n A 1 132 ILE 132 507 507 ILE ILE A . n A 1 133 LEU 133 508 508 LEU LEU A . n A 1 134 LYS 134 509 509 LYS LYS A . n A 1 135 GLY 135 510 510 GLY GLY A . n A 1 136 GLY 136 511 511 GLY GLY A . n A 1 137 TYR 137 512 512 TYR TYR A . n A 1 138 LYS 138 513 513 LYS LYS A . n A 1 139 GLU 139 514 514 GLU GLU A . n A 1 140 PHE 140 515 515 PHE PHE A . n A 1 141 PHE 141 516 516 PHE PHE A . n A 1 142 PRO 142 517 517 PRO PRO A . n A 1 143 GLN 143 518 518 GLN GLN A . n A 1 144 HIS 144 519 519 HIS HIS A . n A 1 145 PRO 145 520 520 PRO PRO A . n A 1 146 ASN 146 521 521 ASN ASN A . n A 1 147 PHE 147 522 522 PHE PHE A . n A 1 148 CYS 148 523 523 CYS CYS A . n A 1 149 GLU 149 524 524 GLU GLU A . n A 1 150 PRO 150 525 525 PRO PRO A . n A 1 151 GLN 151 526 526 GLN GLN A . n A 1 152 ASP 152 527 527 ASP ASP A . n A 1 153 TYR 153 528 528 TYR TYR A . n A 1 154 ARG 154 529 529 ARG ARG A . n A 1 155 PRO 155 530 530 PRO PRO A . n A 1 156 MET 156 531 531 MET MET A . n A 1 157 ASN 157 532 532 ASN ASN A . n A 1 158 HIS 158 533 533 HIS HIS A . n A 1 159 GLU 159 534 534 GLU GLU A . n A 1 160 ALA 160 535 535 ALA ALA A . n A 1 161 PHE 161 536 536 PHE PHE A . n A 1 162 LYS 162 537 537 LYS LYS A . n A 1 163 ASP 163 538 538 ASP ASP A . n A 1 164 GLU 164 539 539 GLU GLU A . n A 1 165 LEU 165 540 540 LEU LEU A . n A 1 166 LYS 166 541 541 LYS LYS A . n A 1 167 THR 167 542 542 THR THR A . n A 1 168 PHE 168 543 543 PHE PHE A . n A 1 169 ARG 169 544 544 ARG ARG A . n A 1 170 LEU 170 545 545 LEU LEU A . n A 1 171 LYS 171 546 546 LYS LYS A . n A 1 172 THR 172 547 547 THR THR A . n A 1 173 ARG 173 548 548 ARG ARG A . n A 1 174 SER 174 549 549 SER SER A . n A 1 175 TRP 175 550 550 TRP TRP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 1001 1001 CL CL A . C 3 HOH 1 1 1 HOH HOH A . C 3 HOH 2 2 2 HOH HOH A . C 3 HOH 3 3 3 HOH HOH A . C 3 HOH 4 4 4 HOH HOH A . C 3 HOH 5 5 5 HOH HOH A . C 3 HOH 6 6 6 HOH HOH A . C 3 HOH 7 7 7 HOH HOH A . C 3 HOH 8 8 8 HOH HOH A . C 3 HOH 9 9 9 HOH HOH A . C 3 HOH 10 10 10 HOH HOH A . C 3 HOH 11 11 11 HOH HOH A . C 3 HOH 12 12 12 HOH HOH A . C 3 HOH 13 13 13 HOH HOH A . C 3 HOH 14 14 14 HOH HOH A . C 3 HOH 15 15 15 HOH HOH A . C 3 HOH 16 16 16 HOH HOH A . C 3 HOH 17 17 17 HOH HOH A . C 3 HOH 18 18 18 HOH HOH A . C 3 HOH 19 19 19 HOH HOH A . C 3 HOH 20 20 20 HOH HOH A . C 3 HOH 21 21 21 HOH HOH A . C 3 HOH 22 22 22 HOH HOH A . C 3 HOH 23 23 23 HOH HOH A . C 3 HOH 24 24 24 HOH HOH A . C 3 HOH 25 25 25 HOH HOH A . C 3 HOH 26 26 26 HOH HOH A . C 3 HOH 27 27 27 HOH HOH A . C 3 HOH 28 28 28 HOH HOH A . C 3 HOH 29 29 29 HOH HOH A . C 3 HOH 30 30 30 HOH HOH A . C 3 HOH 31 31 31 HOH HOH A . C 3 HOH 32 32 32 HOH HOH A . C 3 HOH 33 33 33 HOH HOH A . C 3 HOH 34 34 34 HOH HOH A . C 3 HOH 35 35 35 HOH HOH A . C 3 HOH 36 36 36 HOH HOH A . C 3 HOH 37 37 37 HOH HOH A . C 3 HOH 38 38 38 HOH HOH A . C 3 HOH 39 39 39 HOH HOH A . C 3 HOH 40 40 40 HOH HOH A . C 3 HOH 41 41 41 HOH HOH A . C 3 HOH 42 42 42 HOH HOH A . C 3 HOH 43 43 43 HOH HOH A . C 3 HOH 44 44 44 HOH HOH A . C 3 HOH 45 45 45 HOH HOH A . C 3 HOH 46 46 46 HOH HOH A . C 3 HOH 47 47 47 HOH HOH A . C 3 HOH 48 48 48 HOH HOH A . C 3 HOH 49 49 49 HOH HOH A . C 3 HOH 50 50 50 HOH HOH A . C 3 HOH 51 51 51 HOH HOH A . C 3 HOH 52 52 52 HOH HOH A . C 3 HOH 53 53 53 HOH HOH A . C 3 HOH 54 54 54 HOH HOH A . C 3 HOH 55 55 55 HOH HOH A . C 3 HOH 56 56 56 HOH HOH A . C 3 HOH 57 57 57 HOH HOH A . C 3 HOH 58 58 58 HOH HOH A . C 3 HOH 59 59 59 HOH HOH A . C 3 HOH 60 60 60 HOH HOH A . C 3 HOH 61 61 61 HOH HOH A . C 3 HOH 62 62 62 HOH HOH A . C 3 HOH 63 63 63 HOH HOH A . C 3 HOH 64 64 64 HOH HOH A . C 3 HOH 65 65 65 HOH HOH A . C 3 HOH 66 66 66 HOH HOH A . C 3 HOH 67 67 67 HOH HOH A . C 3 HOH 68 68 68 HOH HOH A . C 3 HOH 69 69 69 HOH HOH A . C 3 HOH 70 70 70 HOH HOH A . C 3 HOH 71 71 71 HOH HOH A . C 3 HOH 72 72 72 HOH HOH A . C 3 HOH 73 73 73 HOH HOH A . C 3 HOH 74 74 74 HOH HOH A . C 3 HOH 75 75 75 HOH HOH A . C 3 HOH 76 76 76 HOH HOH A . C 3 HOH 77 77 77 HOH HOH A . C 3 HOH 78 78 78 HOH HOH A . C 3 HOH 79 79 79 HOH HOH A . C 3 HOH 80 80 80 HOH HOH A . C 3 HOH 81 81 81 HOH HOH A . C 3 HOH 82 82 82 HOH HOH A . C 3 HOH 83 83 83 HOH HOH A . C 3 HOH 84 84 84 HOH HOH A . C 3 HOH 85 85 85 HOH HOH A . C 3 HOH 86 86 86 HOH HOH A . C 3 HOH 87 87 87 HOH HOH A . C 3 HOH 88 88 88 HOH HOH A . C 3 HOH 89 89 89 HOH HOH A . C 3 HOH 90 90 90 HOH HOH A . C 3 HOH 91 91 91 HOH HOH A . C 3 HOH 92 92 92 HOH HOH A . C 3 HOH 93 93 93 HOH HOH A . C 3 HOH 94 94 94 HOH HOH A . C 3 HOH 95 95 95 HOH HOH A . C 3 HOH 96 96 96 HOH HOH A . C 3 HOH 97 97 97 HOH HOH A . C 3 HOH 98 98 98 HOH HOH A . C 3 HOH 99 99 99 HOH HOH A . C 3 HOH 100 100 100 HOH HOH A . C 3 HOH 101 101 101 HOH HOH A . C 3 HOH 102 102 102 HOH HOH A . C 3 HOH 103 103 103 HOH HOH A . C 3 HOH 104 104 104 HOH HOH A . C 3 HOH 105 105 105 HOH HOH A . C 3 HOH 106 106 106 HOH HOH A . C 3 HOH 107 107 107 HOH HOH A . C 3 HOH 108 108 108 HOH HOH A . C 3 HOH 109 109 109 HOH HOH A . C 3 HOH 110 110 110 HOH HOH A . C 3 HOH 111 111 111 HOH HOH A . C 3 HOH 112 112 112 HOH HOH A . C 3 HOH 113 113 113 HOH HOH A . C 3 HOH 114 114 114 HOH HOH A . C 3 HOH 115 115 115 HOH HOH A . C 3 HOH 116 116 116 HOH HOH A . C 3 HOH 117 117 117 HOH HOH A . C 3 HOH 118 118 118 HOH HOH A . C 3 HOH 119 119 119 HOH HOH A . C 3 HOH 120 120 120 HOH HOH A . C 3 HOH 121 121 121 HOH HOH A . C 3 HOH 122 122 122 HOH HOH A . C 3 HOH 123 123 123 HOH HOH A . C 3 HOH 124 124 124 HOH HOH A . C 3 HOH 125 125 125 HOH HOH A . C 3 HOH 126 126 126 HOH HOH A . C 3 HOH 127 127 127 HOH HOH A . C 3 HOH 128 128 128 HOH HOH A . C 3 HOH 129 129 129 HOH HOH A . C 3 HOH 130 130 130 HOH HOH A . C 3 HOH 131 131 131 HOH HOH A . C 3 HOH 132 132 132 HOH HOH A . C 3 HOH 133 133 133 HOH HOH A . C 3 HOH 134 134 134 HOH HOH A . C 3 HOH 135 135 135 HOH HOH A . C 3 HOH 136 136 136 HOH HOH A . C 3 HOH 137 137 137 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id CSD _pdbx_struct_mod_residue.label_seq_id 98 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id CSD _pdbx_struct_mod_residue.auth_seq_id 473 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id CYS _pdbx_struct_mod_residue.details 3-SULFINOALANINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-04-12 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2014-11-12 5 'Structure model' 1 4 2018-01-31 6 'Structure model' 1 5 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Non-polymer description' 4 5 'Structure model' 'Experimental preparation' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' 8 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' exptl_crystal_grow 2 6 'Structure model' chem_comp_atom 3 6 'Structure model' chem_comp_bond 4 6 'Structure model' database_2 5 6 'Structure model' pdbx_initial_refinement_model 6 6 'Structure model' struct_conn 7 6 'Structure model' struct_ref_seq_dif 8 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_exptl_crystal_grow.temp' 2 6 'Structure model' '_database_2.pdbx_DOI' 3 6 'Structure model' '_database_2.pdbx_database_accession' 4 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 6 'Structure model' '_struct_ref_seq_dif.details' 6 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 HKL-2000 'data reduction' . ? 4 CNS phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 439 ? ? 79.45 -3.44 2 1 CSD A 473 ? ? -128.15 -144.95 3 1 PHE A 475 ? ? -126.78 -106.12 4 1 ASN A 532 ? ? -93.12 34.81 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A CYS 461 ? A CYS 86 2 1 Y 1 A SER 462 ? A SER 87 3 1 Y 1 A LEU 463 ? A LEU 88 4 1 Y 1 A ASP 464 ? A ASP 89 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CSD N N N N 75 CSD CA C N R 76 CSD CB C N N 77 CSD SG S N N 78 CSD C C N N 79 CSD O O N N 80 CSD OXT O N N 81 CSD OD1 O N N 82 CSD OD2 O N N 83 CSD H H N N 84 CSD H2 H N N 85 CSD HA H N N 86 CSD HB2 H N N 87 CSD HB3 H N N 88 CSD HXT H N N 89 CSD HD2 H N N 90 CYS N N N N 91 CYS CA C N R 92 CYS C C N N 93 CYS O O N N 94 CYS CB C N N 95 CYS SG S N N 96 CYS OXT O N N 97 CYS H H N N 98 CYS H2 H N N 99 CYS HA H N N 100 CYS HB2 H N N 101 CYS HB3 H N N 102 CYS HG H N N 103 CYS HXT H N N 104 GLN N N N N 105 GLN CA C N S 106 GLN C C N N 107 GLN O O N N 108 GLN CB C N N 109 GLN CG C N N 110 GLN CD C N N 111 GLN OE1 O N N 112 GLN NE2 N N N 113 GLN OXT O N N 114 GLN H H N N 115 GLN H2 H N N 116 GLN HA H N N 117 GLN HB2 H N N 118 GLN HB3 H N N 119 GLN HG2 H N N 120 GLN HG3 H N N 121 GLN HE21 H N N 122 GLN HE22 H N N 123 GLN HXT H N N 124 GLU N N N N 125 GLU CA C N S 126 GLU C C N N 127 GLU O O N N 128 GLU CB C N N 129 GLU CG C N N 130 GLU CD C N N 131 GLU OE1 O N N 132 GLU OE2 O N N 133 GLU OXT O N N 134 GLU H H N N 135 GLU H2 H N N 136 GLU HA H N N 137 GLU HB2 H N N 138 GLU HB3 H N N 139 GLU HG2 H N N 140 GLU HG3 H N N 141 GLU HE2 H N N 142 GLU HXT H N N 143 GLY N N N N 144 GLY CA C N N 145 GLY C C N N 146 GLY O O N N 147 GLY OXT O N N 148 GLY H H N N 149 GLY H2 H N N 150 GLY HA2 H N N 151 GLY HA3 H N N 152 GLY HXT H N N 153 HIS N N N N 154 HIS CA C N S 155 HIS C C N N 156 HIS O O N N 157 HIS CB C N N 158 HIS CG C Y N 159 HIS ND1 N Y N 160 HIS CD2 C Y N 161 HIS CE1 C Y N 162 HIS NE2 N Y N 163 HIS OXT O N N 164 HIS H H N N 165 HIS H2 H N N 166 HIS HA H N N 167 HIS HB2 H N N 168 HIS HB3 H N N 169 HIS HD1 H N N 170 HIS HD2 H N N 171 HIS HE1 H N N 172 HIS HE2 H N N 173 HIS HXT H N N 174 HOH O O N N 175 HOH H1 H N N 176 HOH H2 H N N 177 ILE N N N N 178 ILE CA C N S 179 ILE C C N N 180 ILE O O N N 181 ILE CB C N S 182 ILE CG1 C N N 183 ILE CG2 C N N 184 ILE CD1 C N N 185 ILE OXT O N N 186 ILE H H N N 187 ILE H2 H N N 188 ILE HA H N N 189 ILE HB H N N 190 ILE HG12 H N N 191 ILE HG13 H N N 192 ILE HG21 H N N 193 ILE HG22 H N N 194 ILE HG23 H N N 195 ILE HD11 H N N 196 ILE HD12 H N N 197 ILE HD13 H N N 198 ILE HXT H N N 199 LEU N N N N 200 LEU CA C N S 201 LEU C C N N 202 LEU O O N N 203 LEU CB C N N 204 LEU CG C N N 205 LEU CD1 C N N 206 LEU CD2 C N N 207 LEU OXT O N N 208 LEU H H N N 209 LEU H2 H N N 210 LEU HA H N N 211 LEU HB2 H N N 212 LEU HB3 H N N 213 LEU HG H N N 214 LEU HD11 H N N 215 LEU HD12 H N N 216 LEU HD13 H N N 217 LEU HD21 H N N 218 LEU HD22 H N N 219 LEU HD23 H N N 220 LEU HXT H N N 221 LYS N N N N 222 LYS CA C N S 223 LYS C C N N 224 LYS O O N N 225 LYS CB C N N 226 LYS CG C N N 227 LYS CD C N N 228 LYS CE C N N 229 LYS NZ N N N 230 LYS OXT O N N 231 LYS H H N N 232 LYS H2 H N N 233 LYS HA H N N 234 LYS HB2 H N N 235 LYS HB3 H N N 236 LYS HG2 H N N 237 LYS HG3 H N N 238 LYS HD2 H N N 239 LYS HD3 H N N 240 LYS HE2 H N N 241 LYS HE3 H N N 242 LYS HZ1 H N N 243 LYS HZ2 H N N 244 LYS HZ3 H N N 245 LYS HXT H N N 246 MET N N N N 247 MET CA C N S 248 MET C C N N 249 MET O O N N 250 MET CB C N N 251 MET CG C N N 252 MET SD S N N 253 MET CE C N N 254 MET OXT O N N 255 MET H H N N 256 MET H2 H N N 257 MET HA H N N 258 MET HB2 H N N 259 MET HB3 H N N 260 MET HG2 H N N 261 MET HG3 H N N 262 MET HE1 H N N 263 MET HE2 H N N 264 MET HE3 H N N 265 MET HXT H N N 266 PHE N N N N 267 PHE CA C N S 268 PHE C C N N 269 PHE O O N N 270 PHE CB C N N 271 PHE CG C Y N 272 PHE CD1 C Y N 273 PHE CD2 C Y N 274 PHE CE1 C Y N 275 PHE CE2 C Y N 276 PHE CZ C Y N 277 PHE OXT O N N 278 PHE H H N N 279 PHE H2 H N N 280 PHE HA H N N 281 PHE HB2 H N N 282 PHE HB3 H N N 283 PHE HD1 H N N 284 PHE HD2 H N N 285 PHE HE1 H N N 286 PHE HE2 H N N 287 PHE HZ H N N 288 PHE HXT H N N 289 PRO N N N N 290 PRO CA C N S 291 PRO C C N N 292 PRO O O N N 293 PRO CB C N N 294 PRO CG C N N 295 PRO CD C N N 296 PRO OXT O N N 297 PRO H H N N 298 PRO HA H N N 299 PRO HB2 H N N 300 PRO HB3 H N N 301 PRO HG2 H N N 302 PRO HG3 H N N 303 PRO HD2 H N N 304 PRO HD3 H N N 305 PRO HXT H N N 306 SER N N N N 307 SER CA C N S 308 SER C C N N 309 SER O O N N 310 SER CB C N N 311 SER OG O N N 312 SER OXT O N N 313 SER H H N N 314 SER H2 H N N 315 SER HA H N N 316 SER HB2 H N N 317 SER HB3 H N N 318 SER HG H N N 319 SER HXT H N N 320 THR N N N N 321 THR CA C N S 322 THR C C N N 323 THR O O N N 324 THR CB C N R 325 THR OG1 O N N 326 THR CG2 C N N 327 THR OXT O N N 328 THR H H N N 329 THR H2 H N N 330 THR HA H N N 331 THR HB H N N 332 THR HG1 H N N 333 THR HG21 H N N 334 THR HG22 H N N 335 THR HG23 H N N 336 THR HXT H N N 337 TRP N N N N 338 TRP CA C N S 339 TRP C C N N 340 TRP O O N N 341 TRP CB C N N 342 TRP CG C Y N 343 TRP CD1 C Y N 344 TRP CD2 C Y N 345 TRP NE1 N Y N 346 TRP CE2 C Y N 347 TRP CE3 C Y N 348 TRP CZ2 C Y N 349 TRP CZ3 C Y N 350 TRP CH2 C Y N 351 TRP OXT O N N 352 TRP H H N N 353 TRP H2 H N N 354 TRP HA H N N 355 TRP HB2 H N N 356 TRP HB3 H N N 357 TRP HD1 H N N 358 TRP HE1 H N N 359 TRP HE3 H N N 360 TRP HZ2 H N N 361 TRP HZ3 H N N 362 TRP HH2 H N N 363 TRP HXT H N N 364 TYR N N N N 365 TYR CA C N S 366 TYR C C N N 367 TYR O O N N 368 TYR CB C N N 369 TYR CG C Y N 370 TYR CD1 C Y N 371 TYR CD2 C Y N 372 TYR CE1 C Y N 373 TYR CE2 C Y N 374 TYR CZ C Y N 375 TYR OH O N N 376 TYR OXT O N N 377 TYR H H N N 378 TYR H2 H N N 379 TYR HA H N N 380 TYR HB2 H N N 381 TYR HB3 H N N 382 TYR HD1 H N N 383 TYR HD2 H N N 384 TYR HE1 H N N 385 TYR HE2 H N N 386 TYR HH H N N 387 TYR HXT H N N 388 VAL N N N N 389 VAL CA C N S 390 VAL C C N N 391 VAL O O N N 392 VAL CB C N N 393 VAL CG1 C N N 394 VAL CG2 C N N 395 VAL OXT O N N 396 VAL H H N N 397 VAL H2 H N N 398 VAL HA H N N 399 VAL HB H N N 400 VAL HG11 H N N 401 VAL HG12 H N N 402 VAL HG13 H N N 403 VAL HG21 H N N 404 VAL HG22 H N N 405 VAL HG23 H N N 406 VAL HXT H N N 407 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CSD N CA sing N N 70 CSD N H sing N N 71 CSD N H2 sing N N 72 CSD CA CB sing N N 73 CSD CA C sing N N 74 CSD CA HA sing N N 75 CSD CB SG sing N N 76 CSD CB HB2 sing N N 77 CSD CB HB3 sing N N 78 CSD SG OD1 doub N N 79 CSD SG OD2 sing N N 80 CSD C O doub N N 81 CSD C OXT sing N N 82 CSD OXT HXT sing N N 83 CSD OD2 HD2 sing N N 84 CYS N CA sing N N 85 CYS N H sing N N 86 CYS N H2 sing N N 87 CYS CA C sing N N 88 CYS CA CB sing N N 89 CYS CA HA sing N N 90 CYS C O doub N N 91 CYS C OXT sing N N 92 CYS CB SG sing N N 93 CYS CB HB2 sing N N 94 CYS CB HB3 sing N N 95 CYS SG HG sing N N 96 CYS OXT HXT sing N N 97 GLN N CA sing N N 98 GLN N H sing N N 99 GLN N H2 sing N N 100 GLN CA C sing N N 101 GLN CA CB sing N N 102 GLN CA HA sing N N 103 GLN C O doub N N 104 GLN C OXT sing N N 105 GLN CB CG sing N N 106 GLN CB HB2 sing N N 107 GLN CB HB3 sing N N 108 GLN CG CD sing N N 109 GLN CG HG2 sing N N 110 GLN CG HG3 sing N N 111 GLN CD OE1 doub N N 112 GLN CD NE2 sing N N 113 GLN NE2 HE21 sing N N 114 GLN NE2 HE22 sing N N 115 GLN OXT HXT sing N N 116 GLU N CA sing N N 117 GLU N H sing N N 118 GLU N H2 sing N N 119 GLU CA C sing N N 120 GLU CA CB sing N N 121 GLU CA HA sing N N 122 GLU C O doub N N 123 GLU C OXT sing N N 124 GLU CB CG sing N N 125 GLU CB HB2 sing N N 126 GLU CB HB3 sing N N 127 GLU CG CD sing N N 128 GLU CG HG2 sing N N 129 GLU CG HG3 sing N N 130 GLU CD OE1 doub N N 131 GLU CD OE2 sing N N 132 GLU OE2 HE2 sing N N 133 GLU OXT HXT sing N N 134 GLY N CA sing N N 135 GLY N H sing N N 136 GLY N H2 sing N N 137 GLY CA C sing N N 138 GLY CA HA2 sing N N 139 GLY CA HA3 sing N N 140 GLY C O doub N N 141 GLY C OXT sing N N 142 GLY OXT HXT sing N N 143 HIS N CA sing N N 144 HIS N H sing N N 145 HIS N H2 sing N N 146 HIS CA C sing N N 147 HIS CA CB sing N N 148 HIS CA HA sing N N 149 HIS C O doub N N 150 HIS C OXT sing N N 151 HIS CB CG sing N N 152 HIS CB HB2 sing N N 153 HIS CB HB3 sing N N 154 HIS CG ND1 sing Y N 155 HIS CG CD2 doub Y N 156 HIS ND1 CE1 doub Y N 157 HIS ND1 HD1 sing N N 158 HIS CD2 NE2 sing Y N 159 HIS CD2 HD2 sing N N 160 HIS CE1 NE2 sing Y N 161 HIS CE1 HE1 sing N N 162 HIS NE2 HE2 sing N N 163 HIS OXT HXT sing N N 164 HOH O H1 sing N N 165 HOH O H2 sing N N 166 ILE N CA sing N N 167 ILE N H sing N N 168 ILE N H2 sing N N 169 ILE CA C sing N N 170 ILE CA CB sing N N 171 ILE CA HA sing N N 172 ILE C O doub N N 173 ILE C OXT sing N N 174 ILE CB CG1 sing N N 175 ILE CB CG2 sing N N 176 ILE CB HB sing N N 177 ILE CG1 CD1 sing N N 178 ILE CG1 HG12 sing N N 179 ILE CG1 HG13 sing N N 180 ILE CG2 HG21 sing N N 181 ILE CG2 HG22 sing N N 182 ILE CG2 HG23 sing N N 183 ILE CD1 HD11 sing N N 184 ILE CD1 HD12 sing N N 185 ILE CD1 HD13 sing N N 186 ILE OXT HXT sing N N 187 LEU N CA sing N N 188 LEU N H sing N N 189 LEU N H2 sing N N 190 LEU CA C sing N N 191 LEU CA CB sing N N 192 LEU CA HA sing N N 193 LEU C O doub N N 194 LEU C OXT sing N N 195 LEU CB CG sing N N 196 LEU CB HB2 sing N N 197 LEU CB HB3 sing N N 198 LEU CG CD1 sing N N 199 LEU CG CD2 sing N N 200 LEU CG HG sing N N 201 LEU CD1 HD11 sing N N 202 LEU CD1 HD12 sing N N 203 LEU CD1 HD13 sing N N 204 LEU CD2 HD21 sing N N 205 LEU CD2 HD22 sing N N 206 LEU CD2 HD23 sing N N 207 LEU OXT HXT sing N N 208 LYS N CA sing N N 209 LYS N H sing N N 210 LYS N H2 sing N N 211 LYS CA C sing N N 212 LYS CA CB sing N N 213 LYS CA HA sing N N 214 LYS C O doub N N 215 LYS C OXT sing N N 216 LYS CB CG sing N N 217 LYS CB HB2 sing N N 218 LYS CB HB3 sing N N 219 LYS CG CD sing N N 220 LYS CG HG2 sing N N 221 LYS CG HG3 sing N N 222 LYS CD CE sing N N 223 LYS CD HD2 sing N N 224 LYS CD HD3 sing N N 225 LYS CE NZ sing N N 226 LYS CE HE2 sing N N 227 LYS CE HE3 sing N N 228 LYS NZ HZ1 sing N N 229 LYS NZ HZ2 sing N N 230 LYS NZ HZ3 sing N N 231 LYS OXT HXT sing N N 232 MET N CA sing N N 233 MET N H sing N N 234 MET N H2 sing N N 235 MET CA C sing N N 236 MET CA CB sing N N 237 MET CA HA sing N N 238 MET C O doub N N 239 MET C OXT sing N N 240 MET CB CG sing N N 241 MET CB HB2 sing N N 242 MET CB HB3 sing N N 243 MET CG SD sing N N 244 MET CG HG2 sing N N 245 MET CG HG3 sing N N 246 MET SD CE sing N N 247 MET CE HE1 sing N N 248 MET CE HE2 sing N N 249 MET CE HE3 sing N N 250 MET OXT HXT sing N N 251 PHE N CA sing N N 252 PHE N H sing N N 253 PHE N H2 sing N N 254 PHE CA C sing N N 255 PHE CA CB sing N N 256 PHE CA HA sing N N 257 PHE C O doub N N 258 PHE C OXT sing N N 259 PHE CB CG sing N N 260 PHE CB HB2 sing N N 261 PHE CB HB3 sing N N 262 PHE CG CD1 doub Y N 263 PHE CG CD2 sing Y N 264 PHE CD1 CE1 sing Y N 265 PHE CD1 HD1 sing N N 266 PHE CD2 CE2 doub Y N 267 PHE CD2 HD2 sing N N 268 PHE CE1 CZ doub Y N 269 PHE CE1 HE1 sing N N 270 PHE CE2 CZ sing Y N 271 PHE CE2 HE2 sing N N 272 PHE CZ HZ sing N N 273 PHE OXT HXT sing N N 274 PRO N CA sing N N 275 PRO N CD sing N N 276 PRO N H sing N N 277 PRO CA C sing N N 278 PRO CA CB sing N N 279 PRO CA HA sing N N 280 PRO C O doub N N 281 PRO C OXT sing N N 282 PRO CB CG sing N N 283 PRO CB HB2 sing N N 284 PRO CB HB3 sing N N 285 PRO CG CD sing N N 286 PRO CG HG2 sing N N 287 PRO CG HG3 sing N N 288 PRO CD HD2 sing N N 289 PRO CD HD3 sing N N 290 PRO OXT HXT sing N N 291 SER N CA sing N N 292 SER N H sing N N 293 SER N H2 sing N N 294 SER CA C sing N N 295 SER CA CB sing N N 296 SER CA HA sing N N 297 SER C O doub N N 298 SER C OXT sing N N 299 SER CB OG sing N N 300 SER CB HB2 sing N N 301 SER CB HB3 sing N N 302 SER OG HG sing N N 303 SER OXT HXT sing N N 304 THR N CA sing N N 305 THR N H sing N N 306 THR N H2 sing N N 307 THR CA C sing N N 308 THR CA CB sing N N 309 THR CA HA sing N N 310 THR C O doub N N 311 THR C OXT sing N N 312 THR CB OG1 sing N N 313 THR CB CG2 sing N N 314 THR CB HB sing N N 315 THR OG1 HG1 sing N N 316 THR CG2 HG21 sing N N 317 THR CG2 HG22 sing N N 318 THR CG2 HG23 sing N N 319 THR OXT HXT sing N N 320 TRP N CA sing N N 321 TRP N H sing N N 322 TRP N H2 sing N N 323 TRP CA C sing N N 324 TRP CA CB sing N N 325 TRP CA HA sing N N 326 TRP C O doub N N 327 TRP C OXT sing N N 328 TRP CB CG sing N N 329 TRP CB HB2 sing N N 330 TRP CB HB3 sing N N 331 TRP CG CD1 doub Y N 332 TRP CG CD2 sing Y N 333 TRP CD1 NE1 sing Y N 334 TRP CD1 HD1 sing N N 335 TRP CD2 CE2 doub Y N 336 TRP CD2 CE3 sing Y N 337 TRP NE1 CE2 sing Y N 338 TRP NE1 HE1 sing N N 339 TRP CE2 CZ2 sing Y N 340 TRP CE3 CZ3 doub Y N 341 TRP CE3 HE3 sing N N 342 TRP CZ2 CH2 doub Y N 343 TRP CZ2 HZ2 sing N N 344 TRP CZ3 CH2 sing Y N 345 TRP CZ3 HZ3 sing N N 346 TRP CH2 HH2 sing N N 347 TRP OXT HXT sing N N 348 TYR N CA sing N N 349 TYR N H sing N N 350 TYR N H2 sing N N 351 TYR CA C sing N N 352 TYR CA CB sing N N 353 TYR CA HA sing N N 354 TYR C O doub N N 355 TYR C OXT sing N N 356 TYR CB CG sing N N 357 TYR CB HB2 sing N N 358 TYR CB HB3 sing N N 359 TYR CG CD1 doub Y N 360 TYR CG CD2 sing Y N 361 TYR CD1 CE1 sing Y N 362 TYR CD1 HD1 sing N N 363 TYR CD2 CE2 doub Y N 364 TYR CD2 HD2 sing N N 365 TYR CE1 CZ doub Y N 366 TYR CE1 HE1 sing N N 367 TYR CE2 CZ sing Y N 368 TYR CE2 HE2 sing N N 369 TYR CZ OH sing N N 370 TYR OH HH sing N N 371 TYR OXT HXT sing N N 372 VAL N CA sing N N 373 VAL N H sing N N 374 VAL N H2 sing N N 375 VAL CA C sing N N 376 VAL CA CB sing N N 377 VAL CA HA sing N N 378 VAL C O doub N N 379 VAL C OXT sing N N 380 VAL CB CG1 sing N N 381 VAL CB CG2 sing N N 382 VAL CB HB sing N N 383 VAL CG1 HG11 sing N N 384 VAL CG1 HG12 sing N N 385 VAL CG1 HG13 sing N N 386 VAL CG2 HG21 sing N N 387 VAL CG2 HG22 sing N N 388 VAL CG2 HG23 sing N N 389 VAL OXT HXT sing N N 390 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1QB0 _pdbx_initial_refinement_model.details 'PDB ENTRY 1QB0' #