HEADER TRANSFERASE 27-JAN-05 1YOM TITLE CRYSTAL STRUCTURE OF SRC KINASE DOMAIN IN COMPLEX WITH PURVALANOL A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SRC KINASE DOMAIN; COMPND 5 SYNONYM: P60-SRC, C-SRC; COMPND 6 EC: 2.7.1.112; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS PROTEIN TYROSINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.B.BREITENLECHNER,N.A.KAIRIES,K.HONOLD,S.SCHEIBLICH,H.KOLL, AUTHOR 2 E.GREITER,S.KOCH,W.SCHAEFER,R.HUBER,R.A.ENGH REVDAT 4 10-NOV-21 1YOM 1 REMARK SEQADV REVDAT 3 24-FEB-09 1YOM 1 VERSN REVDAT 2 07-FEB-06 1YOM 1 JRNL REVDAT 1 27-JAN-06 1YOM 0 JRNL AUTH C.B.BREITENLECHNER,N.A.KAIRIES,K.HONOLD,S.SCHEIBLICH,H.KOLL, JRNL AUTH 2 E.GREITER,S.KOCH,W.SCHAEFER,R.HUBER,R.A.ENGH JRNL TITL CRYSTAL STRUCTURES OF ACTIVE SRC KINASE DOMAIN COMPLEXES JRNL REF J.MOL.BIOL. V. 353 222 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16168436 JRNL DOI 10.1016/J.JMB.2005.08.023 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 14312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.313 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 742 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1056 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.4420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4169 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.32000 REMARK 3 B22 (A**2) : -1.81000 REMARK 3 B33 (A**2) : 5.08000 REMARK 3 B12 (A**2) : 1.30000 REMARK 3 B13 (A**2) : -0.11000 REMARK 3 B23 (A**2) : -0.10000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.523 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.380 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.723 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.811 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4340 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3951 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5884 ; 1.692 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9202 ; 0.912 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 517 ; 7.741 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 633 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4734 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 856 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1051 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4799 ; 0.222 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2556 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 97 ; 0.212 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.159 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 85 ; 0.245 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2601 ; 0.638 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4204 ; 1.188 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1739 ; 1.253 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1680 ; 2.196 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YOM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 21.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12300 REMARK 200 FOR THE DATA SET : 4.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46900 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% ETHYLENE GLYCOL , PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 253 REMARK 465 THR A 254 REMARK 465 GLN A 255 REMARK 465 GLY A 256 REMARK 465 PHE A 407 REMARK 465 GLY A 408 REMARK 465 LEU A 409 REMARK 465 ALA A 410 REMARK 465 ARG A 411 REMARK 465 LEU A 412 REMARK 465 ILE A 413 REMARK 465 GLU A 414 REMARK 465 ASP A 415 REMARK 465 ASN A 416 REMARK 465 GLU A 417 REMARK 465 TRP A 418 REMARK 465 THR A 419 REMARK 465 ALA A 420 REMARK 465 ARG A 421 REMARK 465 GLN A 422 REMARK 465 GLY A 423 REMARK 465 ALA A 424 REMARK 465 LYS A 425 REMARK 465 GLN B 253 REMARK 465 THR B 254 REMARK 465 GLN B 255 REMARK 465 GLY B 256 REMARK 465 GLY B 408 REMARK 465 LEU B 409 REMARK 465 ALA B 410 REMARK 465 ARG B 411 REMARK 465 LEU B 412 REMARK 465 ILE B 413 REMARK 465 GLU B 414 REMARK 465 ASP B 415 REMARK 465 ASN B 416 REMARK 465 GLU B 417 REMARK 465 TRP B 418 REMARK 465 THR B 419 REMARK 465 ALA B 420 REMARK 465 ARG B 421 REMARK 465 GLN B 422 REMARK 465 GLY B 423 REMARK 465 ALA B 424 REMARK 465 LYS B 425 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 277 CB CG CD OE1 NE2 REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 PHE A 426 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 277 CB CG CD OE1 NE2 REMARK 470 LYS B 297 CG CD CE NZ REMARK 470 GLU B 312 CG CD OE1 OE2 REMARK 470 PHE B 426 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 454 OG1 THR A 458 1.91 REMARK 500 OH TYR A 529 OXT LEU A 535 1.99 REMARK 500 OG SER A 492 OE1 GLU A 526 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 260 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 367 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 260 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 475 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 266 32.86 -85.47 REMARK 500 ARG A 270 88.04 -151.35 REMARK 500 GLU A 272 -84.33 -104.37 REMARK 500 GLN A 277 -137.57 -134.95 REMARK 500 PHE A 280 47.66 -108.61 REMARK 500 ASN A 289 -132.46 53.12 REMARK 500 THR A 291 -139.51 -103.74 REMARK 500 THR A 292 115.97 62.77 REMARK 500 THR A 303 -88.38 -76.92 REMARK 500 GLU A 312 19.38 -67.21 REMARK 500 ALA A 329 143.71 177.27 REMARK 500 ARG A 387 -0.58 82.21 REMARK 500 ASP A 388 64.97 -164.83 REMARK 500 ASN A 399 34.32 72.56 REMARK 500 LEU A 400 29.46 49.23 REMARK 500 ALA A 405 -179.51 158.85 REMARK 500 PRO A 484 -172.31 -66.69 REMARK 500 PRO A 487 125.57 -31.22 REMARK 500 GLU A 488 17.97 55.80 REMARK 500 PRO A 490 152.15 -48.85 REMARK 500 GLU A 506 -3.47 -59.93 REMARK 500 ARG B 270 59.73 -172.70 REMARK 500 LEU B 271 128.52 -34.83 REMARK 500 GLU B 272 -72.25 -119.97 REMARK 500 GLN B 277 -132.43 -97.69 REMARK 500 ASN B 289 -83.09 43.68 REMARK 500 THR B 291 -150.74 -97.72 REMARK 500 THR B 292 92.12 70.43 REMARK 500 PRO B 301 99.30 -38.64 REMARK 500 THR B 303 -76.27 40.01 REMARK 500 SER B 305 -178.60 -52.36 REMARK 500 ARG B 320 118.60 -172.06 REMARK 500 SER B 332 57.49 -102.13 REMARK 500 GLU B 333 98.86 -160.49 REMARK 500 GLU B 334 112.47 -31.35 REMARK 500 ARG B 387 -24.58 85.73 REMARK 500 LEU B 400 31.71 37.00 REMARK 500 ALA B 405 -153.06 -150.45 REMARK 500 ASP B 406 44.85 39.29 REMARK 500 PRO B 427 44.94 -94.51 REMARK 500 ARG B 440 57.98 -90.09 REMARK 500 TYR B 465 68.85 35.70 REMARK 500 CYS B 485 104.52 -25.91 REMARK 500 PRO B 487 113.90 -37.19 REMARK 500 PRO B 490 150.87 -40.78 REMARK 500 THR B 525 -46.65 -148.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P01 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P01 B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YOJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SRC KINASE DOMAIN REMARK 900 RELATED ID: 1YOL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SRC KINASE DOMAIN IN COMPLEX WITH CGP77675 DBREF 1YOM A 253 535 UNP P12931 SRC_HUMAN 253 535 DBREF 1YOM B 253 535 UNP P12931 SRC_HUMAN 253 535 SEQADV 1YOM ASN A 344 UNP P12931 SER 344 ENGINEERED MUTATION SEQADV 1YOM SER A 369 UNP P12931 ALA 369 ENGINEERED MUTATION SEQADV 1YOM TRP A 418 UNP P12931 TYR 418 ENGINEERED MUTATION SEQADV 1YOM ASN B 344 UNP P12931 SER 344 ENGINEERED MUTATION SEQADV 1YOM SER B 369 UNP P12931 ALA 369 ENGINEERED MUTATION SEQADV 1YOM TRP B 418 UNP P12931 TYR 418 ENGINEERED MUTATION SEQRES 1 A 283 GLN THR GLN GLY LEU ALA LYS ASP ALA TRP GLU ILE PRO SEQRES 2 A 283 ARG GLU SER LEU ARG LEU GLU VAL LYS LEU GLY GLN GLY SEQRES 3 A 283 CYS PHE GLY GLU VAL TRP MET GLY THR TRP ASN GLY THR SEQRES 4 A 283 THR ARG VAL ALA ILE LYS THR LEU LYS PRO GLY THR MET SEQRES 5 A 283 SER PRO GLU ALA PHE LEU GLN GLU ALA GLN VAL MET LYS SEQRES 6 A 283 LYS LEU ARG HIS GLU LYS LEU VAL GLN LEU TYR ALA VAL SEQRES 7 A 283 VAL SER GLU GLU PRO ILE TYR ILE VAL THR GLU TYR MET SEQRES 8 A 283 ASN LYS GLY SER LEU LEU ASP PHE LEU LYS GLY GLU THR SEQRES 9 A 283 GLY LYS TYR LEU ARG LEU PRO GLN LEU VAL ASP MET SER SEQRES 10 A 283 ALA GLN ILE ALA SER GLY MET ALA TYR VAL GLU ARG MET SEQRES 11 A 283 ASN TYR VAL HIS ARG ASP LEU ARG ALA ALA ASN ILE LEU SEQRES 12 A 283 VAL GLY GLU ASN LEU VAL CYS LYS VAL ALA ASP PHE GLY SEQRES 13 A 283 LEU ALA ARG LEU ILE GLU ASP ASN GLU TRP THR ALA ARG SEQRES 14 A 283 GLN GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU SEQRES 15 A 283 ALA ALA LEU TYR GLY ARG PHE THR ILE LYS SER ASP VAL SEQRES 16 A 283 TRP SER PHE GLY ILE LEU LEU THR GLU LEU THR THR LYS SEQRES 17 A 283 GLY ARG VAL PRO TYR PRO GLY MET VAL ASN ARG GLU VAL SEQRES 18 A 283 LEU ASP GLN VAL GLU ARG GLY TYR ARG MET PRO CYS PRO SEQRES 19 A 283 PRO GLU CYS PRO GLU SER LEU HIS ASP LEU MET CYS GLN SEQRES 20 A 283 CYS TRP ARG LYS GLU PRO GLU GLU ARG PRO THR PHE GLU SEQRES 21 A 283 TYR LEU GLN ALA PHE LEU GLU ASP TYR PHE THR SER THR SEQRES 22 A 283 GLU PRO GLN TYR GLN PRO GLY GLU ASN LEU SEQRES 1 B 283 GLN THR GLN GLY LEU ALA LYS ASP ALA TRP GLU ILE PRO SEQRES 2 B 283 ARG GLU SER LEU ARG LEU GLU VAL LYS LEU GLY GLN GLY SEQRES 3 B 283 CYS PHE GLY GLU VAL TRP MET GLY THR TRP ASN GLY THR SEQRES 4 B 283 THR ARG VAL ALA ILE LYS THR LEU LYS PRO GLY THR MET SEQRES 5 B 283 SER PRO GLU ALA PHE LEU GLN GLU ALA GLN VAL MET LYS SEQRES 6 B 283 LYS LEU ARG HIS GLU LYS LEU VAL GLN LEU TYR ALA VAL SEQRES 7 B 283 VAL SER GLU GLU PRO ILE TYR ILE VAL THR GLU TYR MET SEQRES 8 B 283 ASN LYS GLY SER LEU LEU ASP PHE LEU LYS GLY GLU THR SEQRES 9 B 283 GLY LYS TYR LEU ARG LEU PRO GLN LEU VAL ASP MET SER SEQRES 10 B 283 ALA GLN ILE ALA SER GLY MET ALA TYR VAL GLU ARG MET SEQRES 11 B 283 ASN TYR VAL HIS ARG ASP LEU ARG ALA ALA ASN ILE LEU SEQRES 12 B 283 VAL GLY GLU ASN LEU VAL CYS LYS VAL ALA ASP PHE GLY SEQRES 13 B 283 LEU ALA ARG LEU ILE GLU ASP ASN GLU TRP THR ALA ARG SEQRES 14 B 283 GLN GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU SEQRES 15 B 283 ALA ALA LEU TYR GLY ARG PHE THR ILE LYS SER ASP VAL SEQRES 16 B 283 TRP SER PHE GLY ILE LEU LEU THR GLU LEU THR THR LYS SEQRES 17 B 283 GLY ARG VAL PRO TYR PRO GLY MET VAL ASN ARG GLU VAL SEQRES 18 B 283 LEU ASP GLN VAL GLU ARG GLY TYR ARG MET PRO CYS PRO SEQRES 19 B 283 PRO GLU CYS PRO GLU SER LEU HIS ASP LEU MET CYS GLN SEQRES 20 B 283 CYS TRP ARG LYS GLU PRO GLU GLU ARG PRO THR PHE GLU SEQRES 21 B 283 TYR LEU GLN ALA PHE LEU GLU ASP TYR PHE THR SER THR SEQRES 22 B 283 GLU PRO GLN TYR GLN PRO GLY GLU ASN LEU HET P01 A 1 27 HET P01 B 2 27 HETNAM P01 2-({6-[(3-CHLOROPHENYL)AMINO]-9-ISOPROPYL-9H-PURIN-2- HETNAM 2 P01 YL}AMINO)-3-METHYLBUTAN-1-OL HETSYN P01 PURVALANOL A FORMUL 3 P01 2(C19 H25 CL N6 O) FORMUL 5 HOH *124(H2 O) HELIX 1 1 ALA A 313 LEU A 319 1 7 HELIX 2 2 SER A 347 GLY A 354 1 8 HELIX 3 3 GLU A 355 LEU A 360 5 6 HELIX 4 4 ARG A 361 MET A 382 1 22 HELIX 5 5 ARG A 390 ALA A 392 5 3 HELIX 6 6 GLU A 398 LEU A 400 5 3 HELIX 7 7 ALA A 432 GLY A 439 1 8 HELIX 8 8 THR A 442 THR A 459 1 18 HELIX 9 9 VAL A 469 ARG A 479 1 11 HELIX 10 10 PRO A 490 TRP A 501 1 12 HELIX 11 11 THR A 510 ASP A 520 1 11 HELIX 12 12 ASP A 520 THR A 525 1 6 HELIX 13 13 PRO B 306 PHE B 309 5 4 HELIX 14 14 LEU B 310 LEU B 319 1 10 HELIX 15 15 SER B 347 GLY B 354 1 8 HELIX 16 16 GLU B 355 LEU B 360 5 6 HELIX 17 17 ARG B 361 MET B 382 1 22 HELIX 18 18 ARG B 390 ALA B 392 5 3 HELIX 19 19 PRO B 427 THR B 431 5 5 HELIX 20 20 ALA B 432 GLY B 439 1 8 HELIX 21 21 THR B 442 THR B 459 1 18 HELIX 22 22 VAL B 469 GLY B 480 1 12 HELIX 23 23 PRO B 490 TRP B 501 1 12 HELIX 24 24 GLU B 504 ARG B 508 5 5 HELIX 25 25 THR B 510 ASP B 520 1 11 HELIX 26 26 ASP B 520 THR B 525 1 6 SHEET 1 A 5 ARG A 270 GLY A 276 0 SHEET 2 A 5 VAL A 283 THR A 287 -1 O MET A 285 N VAL A 273 SHEET 3 A 5 ARG A 293 THR A 298 -1 O ILE A 296 N TRP A 284 SHEET 4 A 5 TYR A 337 THR A 340 -1 O ILE A 338 N LYS A 297 SHEET 5 A 5 LEU A 327 VAL A 331 -1 N ALA A 329 O VAL A 339 SHEET 1 B 2 ILE A 394 VAL A 396 0 SHEET 2 B 2 CYS A 402 VAL A 404 -1 O LYS A 403 N LEU A 395 SHEET 1 C 5 VAL B 273 LYS B 274 0 SHEET 2 C 5 GLY B 281 MET B 285 -1 O MET B 285 N VAL B 273 SHEET 3 C 5 VAL B 294 LEU B 299 -1 O ILE B 296 N TRP B 284 SHEET 4 C 5 TYR B 337 GLU B 341 -1 O ILE B 338 N LYS B 297 SHEET 5 C 5 LEU B 327 VAL B 331 -1 N TYR B 328 O VAL B 339 SHEET 1 D 2 ILE B 394 VAL B 396 0 SHEET 2 D 2 CYS B 402 VAL B 404 -1 O LYS B 403 N LEU B 395 CISPEP 1 GLU A 334 PRO A 335 0 -1.26 CISPEP 2 GLU B 334 PRO B 335 0 15.09 SITE 1 AC1 11 LEU A 275 VAL A 283 ALA A 295 VAL A 325 SITE 2 AC1 11 THR A 340 GLU A 341 TYR A 342 MET A 343 SITE 3 AC1 11 GLY A 346 LEU A 395 HOH A 581 SITE 1 AC2 11 GLY B 276 VAL B 283 ALA B 295 VAL B 325 SITE 2 AC2 11 THR B 340 GLU B 341 TYR B 342 MET B 343 SITE 3 AC2 11 ASN B 344 GLY B 346 LEU B 395 CRYST1 41.698 63.078 74.055 100.61 88.86 89.89 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023982 -0.000046 -0.000496 0.00000 SCALE2 0.000000 0.015853 0.002971 0.00000 SCALE3 0.000000 0.000000 0.013741 0.00000