data_1YP8 # _entry.id 1YP8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YP8 pdb_00001yp8 10.2210/pdb1yp8/pdb RCSB RCSB031776 ? ? WWPDB D_1000031776 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-05-24 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2024-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_spectrometer 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' pdbx_entry_details 8 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YP8 _pdbx_database_status.recvd_initial_deposition_date 2005-01-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mulvenna, J.P.' 1 'Sando, L.' 2 'Craik, D.J.' 3 # _citation.id primary _citation.title 'Processing of a 22 kDa precursor protein to produce the circular protein tricyclon A.' _citation.journal_abbrev Structure _citation.journal_volume 13 _citation.page_first 691 _citation.page_last 701 _citation.year 2005 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15893660 _citation.pdbx_database_id_DOI 10.1016/j.str.2005.02.013 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mulvenna, J.P.' 1 ? primary 'Sando, L.' 2 ? primary 'Craik, D.J.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'tricyclon A' _entity.formula_weight 3506.961 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CGESCFLGTCYTKGCSCGEWKLCYGTNGGTIFD _entity_poly.pdbx_seq_one_letter_code_can CGESCFLGTCYTKGCSCGEWKLCYGTNGGTIFD _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 GLY n 1 3 GLU n 1 4 SER n 1 5 CYS n 1 6 PHE n 1 7 LEU n 1 8 GLY n 1 9 THR n 1 10 CYS n 1 11 TYR n 1 12 THR n 1 13 LYS n 1 14 GLY n 1 15 CYS n 1 16 SER n 1 17 CYS n 1 18 GLY n 1 19 GLU n 1 20 TRP n 1 21 LYS n 1 22 LEU n 1 23 CYS n 1 24 TYR n 1 25 GLY n 1 26 THR n 1 27 ASN n 1 28 GLY n 1 29 GLY n 1 30 THR n 1 31 ILE n 1 32 PHE n 1 33 ASP n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Viola tricolor' _entity_src_nat.pdbx_ncbi_taxonomy_id 214053 _entity_src_nat.genus Viola _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 1 1 CYS CYS A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 CYS 5 5 5 CYS CYS A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 CYS 15 15 15 CYS CYS A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 CYS 17 17 17 CYS CYS A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 TRP 20 20 20 TRP TRP A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 CYS 23 23 23 CYS CYS A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 ASP 33 33 33 ASP ASP A . n # _exptl.entry_id 1YP8 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1YP8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YP8 _struct.title 'Solution structure of the cyclotide tricyclon A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YP8 _struct_keywords.pdbx_keywords 'CELL CYCLE' _struct_keywords.text 'beta-sheet, cystine knot, cyclic backbone, cyclotide, CELL CYCLE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1YP8 _struct_ref.pdbx_db_accession 1YP8 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YP8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 33 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1YP8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 33 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 33 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 1 SG ? ? ? 1_555 A CYS 15 SG ? ? A CYS 1 A CYS 15 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 17 SG ? ? A CYS 5 A CYS 17 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf3 disulf ? ? A CYS 10 SG ? ? ? 1_555 A CYS 23 SG ? ? A CYS 10 A CYS 23 1_555 ? ? ? ? ? ? ? 2.027 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 1 ? CYS A 15 ? CYS A 1 ? 1_555 CYS A 15 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 5 ? CYS A 17 ? CYS A 5 ? 1_555 CYS A 17 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 10 ? CYS A 23 ? CYS A 10 ? 1_555 CYS A 23 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 15 ? GLY A 18 ? CYS A 15 GLY A 18 A 2 LEU A 22 ? ASN A 27 ? LEU A 22 ASN A 27 A 3 THR A 30 ? PHE A 32 ? THR A 30 PHE A 32 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 16 ? N SER A 16 O TYR A 24 ? O TYR A 24 A 2 3 N GLY A 25 ? N GLY A 25 O PHE A 32 ? O PHE A 32 # _pdbx_entry_details.entry_id 1YP8 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N A CYS 1 ? ? C A ASP 33 ? ? 1.32 2 2 N A CYS 1 ? ? C A ASP 33 ? ? 1.33 3 2 OE2 A GLU 3 ? ? HG1 A THR 12 ? ? 1.59 4 3 N A CYS 1 ? ? C A ASP 33 ? ? 1.33 5 4 N A CYS 1 ? ? C A ASP 33 ? ? 1.33 6 5 N A CYS 1 ? ? C A ASP 33 ? ? 1.32 7 5 OE2 A GLU 3 ? ? HG1 A THR 12 ? ? 1.60 8 6 N A CYS 1 ? ? C A ASP 33 ? ? 1.33 9 7 N A CYS 1 ? ? C A ASP 33 ? ? 1.32 10 7 OE2 A GLU 3 ? ? HG1 A THR 12 ? ? 1.60 11 8 N A CYS 1 ? ? C A ASP 33 ? ? 1.32 12 9 N A CYS 1 ? ? C A ASP 33 ? ? 1.32 13 10 N A CYS 1 ? ? C A ASP 33 ? ? 1.32 14 11 N A CYS 1 ? ? C A ASP 33 ? ? 1.32 15 12 N A CYS 1 ? ? C A ASP 33 ? ? 1.32 16 12 OE2 A GLU 3 ? ? HG1 A THR 12 ? ? 1.59 17 13 N A CYS 1 ? ? C A ASP 33 ? ? 1.33 18 14 N A CYS 1 ? ? C A ASP 33 ? ? 1.32 19 14 OE2 A GLU 3 ? ? HG1 A THR 12 ? ? 1.59 20 15 N A CYS 1 ? ? C A ASP 33 ? ? 1.32 21 16 N A CYS 1 ? ? C A ASP 33 ? ? 1.32 22 17 N A CYS 1 ? ? C A ASP 33 ? ? 1.33 23 18 N A CYS 1 ? ? C A ASP 33 ? ? 1.33 24 19 N A CYS 1 ? ? C A ASP 33 ? ? 1.33 25 19 OE2 A GLU 3 ? ? HG1 A THR 12 ? ? 1.59 26 20 N A CYS 1 ? ? C A ASP 33 ? ? 1.33 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 4 ? ? -150.60 63.15 2 1 TRP A 20 ? ? -73.86 25.73 3 2 LEU A 7 ? ? -99.24 39.03 4 3 LEU A 7 ? ? -93.59 38.47 5 4 CYS A 5 ? ? -78.24 48.94 6 4 LEU A 7 ? ? -99.19 39.00 7 5 CYS A 5 ? ? -69.61 65.98 8 5 LEU A 7 ? ? -99.11 45.67 9 5 GLU A 19 ? ? -37.08 133.97 10 6 SER A 4 ? ? -150.24 74.97 11 6 TRP A 20 ? ? -75.60 32.69 12 8 LEU A 7 ? ? -98.80 41.47 13 8 CYS A 10 ? ? -77.77 -157.27 14 8 GLU A 19 ? ? -39.60 135.46 15 9 LEU A 7 ? ? -90.99 39.91 16 9 GLU A 19 ? ? -39.06 138.53 17 10 LEU A 7 ? ? -114.85 -129.79 18 11 TRP A 20 ? ? -78.57 37.09 19 11 LEU A 22 ? ? -106.95 -161.01 20 12 LEU A 7 ? ? -97.78 35.89 21 12 GLU A 19 ? ? -35.23 131.92 22 13 TRP A 20 ? ? -75.87 29.08 23 14 CYS A 5 ? ? -69.77 64.50 24 14 LEU A 7 ? ? -103.89 45.59 25 14 GLU A 19 ? ? -39.01 136.24 26 15 GLU A 19 ? ? -38.30 133.96 27 16 LEU A 7 ? ? -96.13 32.08 28 16 GLU A 19 ? ? -69.95 42.46 29 17 CYS A 5 ? ? -69.27 85.56 30 17 CYS A 10 ? ? -85.22 -155.00 31 17 THR A 26 ? ? -150.46 62.86 32 18 LEU A 7 ? ? -100.02 40.17 33 18 THR A 26 ? ? -150.82 62.47 34 20 SER A 4 ? ? -150.02 83.15 # _pdbx_nmr_ensemble.entry_id 1YP8 _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1YP8 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '2mg tricyclon A' '0.55ml 90% H2O/10% D2O with with 0.1ml of CD3CN' 2 '2mg tricyclon A' '0.55ml D2O with with 0.1ml of CD3CN' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 305 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 3.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D TOCSY' 1 2 1 '2D NOESY' 1 3 1 DQF-COSY 1 4 2 E-COSY 2 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal 'structure solution' CNS 1.1 ? 1 refinement CNS 1.1 ? 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 ASP N N N N 18 ASP CA C N S 19 ASP C C N N 20 ASP O O N N 21 ASP CB C N N 22 ASP CG C N N 23 ASP OD1 O N N 24 ASP OD2 O N N 25 ASP OXT O N N 26 ASP H H N N 27 ASP H2 H N N 28 ASP HA H N N 29 ASP HB2 H N N 30 ASP HB3 H N N 31 ASP HD2 H N N 32 ASP HXT H N N 33 CYS N N N N 34 CYS CA C N R 35 CYS C C N N 36 CYS O O N N 37 CYS CB C N N 38 CYS SG S N N 39 CYS OXT O N N 40 CYS H H N N 41 CYS H2 H N N 42 CYS HA H N N 43 CYS HB2 H N N 44 CYS HB3 H N N 45 CYS HG H N N 46 CYS HXT H N N 47 GLU N N N N 48 GLU CA C N S 49 GLU C C N N 50 GLU O O N N 51 GLU CB C N N 52 GLU CG C N N 53 GLU CD C N N 54 GLU OE1 O N N 55 GLU OE2 O N N 56 GLU OXT O N N 57 GLU H H N N 58 GLU H2 H N N 59 GLU HA H N N 60 GLU HB2 H N N 61 GLU HB3 H N N 62 GLU HG2 H N N 63 GLU HG3 H N N 64 GLU HE2 H N N 65 GLU HXT H N N 66 GLY N N N N 67 GLY CA C N N 68 GLY C C N N 69 GLY O O N N 70 GLY OXT O N N 71 GLY H H N N 72 GLY H2 H N N 73 GLY HA2 H N N 74 GLY HA3 H N N 75 GLY HXT H N N 76 ILE N N N N 77 ILE CA C N S 78 ILE C C N N 79 ILE O O N N 80 ILE CB C N S 81 ILE CG1 C N N 82 ILE CG2 C N N 83 ILE CD1 C N N 84 ILE OXT O N N 85 ILE H H N N 86 ILE H2 H N N 87 ILE HA H N N 88 ILE HB H N N 89 ILE HG12 H N N 90 ILE HG13 H N N 91 ILE HG21 H N N 92 ILE HG22 H N N 93 ILE HG23 H N N 94 ILE HD11 H N N 95 ILE HD12 H N N 96 ILE HD13 H N N 97 ILE HXT H N N 98 LEU N N N N 99 LEU CA C N S 100 LEU C C N N 101 LEU O O N N 102 LEU CB C N N 103 LEU CG C N N 104 LEU CD1 C N N 105 LEU CD2 C N N 106 LEU OXT O N N 107 LEU H H N N 108 LEU H2 H N N 109 LEU HA H N N 110 LEU HB2 H N N 111 LEU HB3 H N N 112 LEU HG H N N 113 LEU HD11 H N N 114 LEU HD12 H N N 115 LEU HD13 H N N 116 LEU HD21 H N N 117 LEU HD22 H N N 118 LEU HD23 H N N 119 LEU HXT H N N 120 LYS N N N N 121 LYS CA C N S 122 LYS C C N N 123 LYS O O N N 124 LYS CB C N N 125 LYS CG C N N 126 LYS CD C N N 127 LYS CE C N N 128 LYS NZ N N N 129 LYS OXT O N N 130 LYS H H N N 131 LYS H2 H N N 132 LYS HA H N N 133 LYS HB2 H N N 134 LYS HB3 H N N 135 LYS HG2 H N N 136 LYS HG3 H N N 137 LYS HD2 H N N 138 LYS HD3 H N N 139 LYS HE2 H N N 140 LYS HE3 H N N 141 LYS HZ1 H N N 142 LYS HZ2 H N N 143 LYS HZ3 H N N 144 LYS HXT H N N 145 PHE N N N N 146 PHE CA C N S 147 PHE C C N N 148 PHE O O N N 149 PHE CB C N N 150 PHE CG C Y N 151 PHE CD1 C Y N 152 PHE CD2 C Y N 153 PHE CE1 C Y N 154 PHE CE2 C Y N 155 PHE CZ C Y N 156 PHE OXT O N N 157 PHE H H N N 158 PHE H2 H N N 159 PHE HA H N N 160 PHE HB2 H N N 161 PHE HB3 H N N 162 PHE HD1 H N N 163 PHE HD2 H N N 164 PHE HE1 H N N 165 PHE HE2 H N N 166 PHE HZ H N N 167 PHE HXT H N N 168 SER N N N N 169 SER CA C N S 170 SER C C N N 171 SER O O N N 172 SER CB C N N 173 SER OG O N N 174 SER OXT O N N 175 SER H H N N 176 SER H2 H N N 177 SER HA H N N 178 SER HB2 H N N 179 SER HB3 H N N 180 SER HG H N N 181 SER HXT H N N 182 THR N N N N 183 THR CA C N S 184 THR C C N N 185 THR O O N N 186 THR CB C N R 187 THR OG1 O N N 188 THR CG2 C N N 189 THR OXT O N N 190 THR H H N N 191 THR H2 H N N 192 THR HA H N N 193 THR HB H N N 194 THR HG1 H N N 195 THR HG21 H N N 196 THR HG22 H N N 197 THR HG23 H N N 198 THR HXT H N N 199 TRP N N N N 200 TRP CA C N S 201 TRP C C N N 202 TRP O O N N 203 TRP CB C N N 204 TRP CG C Y N 205 TRP CD1 C Y N 206 TRP CD2 C Y N 207 TRP NE1 N Y N 208 TRP CE2 C Y N 209 TRP CE3 C Y N 210 TRP CZ2 C Y N 211 TRP CZ3 C Y N 212 TRP CH2 C Y N 213 TRP OXT O N N 214 TRP H H N N 215 TRP H2 H N N 216 TRP HA H N N 217 TRP HB2 H N N 218 TRP HB3 H N N 219 TRP HD1 H N N 220 TRP HE1 H N N 221 TRP HE3 H N N 222 TRP HZ2 H N N 223 TRP HZ3 H N N 224 TRP HH2 H N N 225 TRP HXT H N N 226 TYR N N N N 227 TYR CA C N S 228 TYR C C N N 229 TYR O O N N 230 TYR CB C N N 231 TYR CG C Y N 232 TYR CD1 C Y N 233 TYR CD2 C Y N 234 TYR CE1 C Y N 235 TYR CE2 C Y N 236 TYR CZ C Y N 237 TYR OH O N N 238 TYR OXT O N N 239 TYR H H N N 240 TYR H2 H N N 241 TYR HA H N N 242 TYR HB2 H N N 243 TYR HB3 H N N 244 TYR HD1 H N N 245 TYR HD2 H N N 246 TYR HE1 H N N 247 TYR HE2 H N N 248 TYR HH H N N 249 TYR HXT H N N 250 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 ASP N CA sing N N 17 ASP N H sing N N 18 ASP N H2 sing N N 19 ASP CA C sing N N 20 ASP CA CB sing N N 21 ASP CA HA sing N N 22 ASP C O doub N N 23 ASP C OXT sing N N 24 ASP CB CG sing N N 25 ASP CB HB2 sing N N 26 ASP CB HB3 sing N N 27 ASP CG OD1 doub N N 28 ASP CG OD2 sing N N 29 ASP OD2 HD2 sing N N 30 ASP OXT HXT sing N N 31 CYS N CA sing N N 32 CYS N H sing N N 33 CYS N H2 sing N N 34 CYS CA C sing N N 35 CYS CA CB sing N N 36 CYS CA HA sing N N 37 CYS C O doub N N 38 CYS C OXT sing N N 39 CYS CB SG sing N N 40 CYS CB HB2 sing N N 41 CYS CB HB3 sing N N 42 CYS SG HG sing N N 43 CYS OXT HXT sing N N 44 GLU N CA sing N N 45 GLU N H sing N N 46 GLU N H2 sing N N 47 GLU CA C sing N N 48 GLU CA CB sing N N 49 GLU CA HA sing N N 50 GLU C O doub N N 51 GLU C OXT sing N N 52 GLU CB CG sing N N 53 GLU CB HB2 sing N N 54 GLU CB HB3 sing N N 55 GLU CG CD sing N N 56 GLU CG HG2 sing N N 57 GLU CG HG3 sing N N 58 GLU CD OE1 doub N N 59 GLU CD OE2 sing N N 60 GLU OE2 HE2 sing N N 61 GLU OXT HXT sing N N 62 GLY N CA sing N N 63 GLY N H sing N N 64 GLY N H2 sing N N 65 GLY CA C sing N N 66 GLY CA HA2 sing N N 67 GLY CA HA3 sing N N 68 GLY C O doub N N 69 GLY C OXT sing N N 70 GLY OXT HXT sing N N 71 ILE N CA sing N N 72 ILE N H sing N N 73 ILE N H2 sing N N 74 ILE CA C sing N N 75 ILE CA CB sing N N 76 ILE CA HA sing N N 77 ILE C O doub N N 78 ILE C OXT sing N N 79 ILE CB CG1 sing N N 80 ILE CB CG2 sing N N 81 ILE CB HB sing N N 82 ILE CG1 CD1 sing N N 83 ILE CG1 HG12 sing N N 84 ILE CG1 HG13 sing N N 85 ILE CG2 HG21 sing N N 86 ILE CG2 HG22 sing N N 87 ILE CG2 HG23 sing N N 88 ILE CD1 HD11 sing N N 89 ILE CD1 HD12 sing N N 90 ILE CD1 HD13 sing N N 91 ILE OXT HXT sing N N 92 LEU N CA sing N N 93 LEU N H sing N N 94 LEU N H2 sing N N 95 LEU CA C sing N N 96 LEU CA CB sing N N 97 LEU CA HA sing N N 98 LEU C O doub N N 99 LEU C OXT sing N N 100 LEU CB CG sing N N 101 LEU CB HB2 sing N N 102 LEU CB HB3 sing N N 103 LEU CG CD1 sing N N 104 LEU CG CD2 sing N N 105 LEU CG HG sing N N 106 LEU CD1 HD11 sing N N 107 LEU CD1 HD12 sing N N 108 LEU CD1 HD13 sing N N 109 LEU CD2 HD21 sing N N 110 LEU CD2 HD22 sing N N 111 LEU CD2 HD23 sing N N 112 LEU OXT HXT sing N N 113 LYS N CA sing N N 114 LYS N H sing N N 115 LYS N H2 sing N N 116 LYS CA C sing N N 117 LYS CA CB sing N N 118 LYS CA HA sing N N 119 LYS C O doub N N 120 LYS C OXT sing N N 121 LYS CB CG sing N N 122 LYS CB HB2 sing N N 123 LYS CB HB3 sing N N 124 LYS CG CD sing N N 125 LYS CG HG2 sing N N 126 LYS CG HG3 sing N N 127 LYS CD CE sing N N 128 LYS CD HD2 sing N N 129 LYS CD HD3 sing N N 130 LYS CE NZ sing N N 131 LYS CE HE2 sing N N 132 LYS CE HE3 sing N N 133 LYS NZ HZ1 sing N N 134 LYS NZ HZ2 sing N N 135 LYS NZ HZ3 sing N N 136 LYS OXT HXT sing N N 137 PHE N CA sing N N 138 PHE N H sing N N 139 PHE N H2 sing N N 140 PHE CA C sing N N 141 PHE CA CB sing N N 142 PHE CA HA sing N N 143 PHE C O doub N N 144 PHE C OXT sing N N 145 PHE CB CG sing N N 146 PHE CB HB2 sing N N 147 PHE CB HB3 sing N N 148 PHE CG CD1 doub Y N 149 PHE CG CD2 sing Y N 150 PHE CD1 CE1 sing Y N 151 PHE CD1 HD1 sing N N 152 PHE CD2 CE2 doub Y N 153 PHE CD2 HD2 sing N N 154 PHE CE1 CZ doub Y N 155 PHE CE1 HE1 sing N N 156 PHE CE2 CZ sing Y N 157 PHE CE2 HE2 sing N N 158 PHE CZ HZ sing N N 159 PHE OXT HXT sing N N 160 SER N CA sing N N 161 SER N H sing N N 162 SER N H2 sing N N 163 SER CA C sing N N 164 SER CA CB sing N N 165 SER CA HA sing N N 166 SER C O doub N N 167 SER C OXT sing N N 168 SER CB OG sing N N 169 SER CB HB2 sing N N 170 SER CB HB3 sing N N 171 SER OG HG sing N N 172 SER OXT HXT sing N N 173 THR N CA sing N N 174 THR N H sing N N 175 THR N H2 sing N N 176 THR CA C sing N N 177 THR CA CB sing N N 178 THR CA HA sing N N 179 THR C O doub N N 180 THR C OXT sing N N 181 THR CB OG1 sing N N 182 THR CB CG2 sing N N 183 THR CB HB sing N N 184 THR OG1 HG1 sing N N 185 THR CG2 HG21 sing N N 186 THR CG2 HG22 sing N N 187 THR CG2 HG23 sing N N 188 THR OXT HXT sing N N 189 TRP N CA sing N N 190 TRP N H sing N N 191 TRP N H2 sing N N 192 TRP CA C sing N N 193 TRP CA CB sing N N 194 TRP CA HA sing N N 195 TRP C O doub N N 196 TRP C OXT sing N N 197 TRP CB CG sing N N 198 TRP CB HB2 sing N N 199 TRP CB HB3 sing N N 200 TRP CG CD1 doub Y N 201 TRP CG CD2 sing Y N 202 TRP CD1 NE1 sing Y N 203 TRP CD1 HD1 sing N N 204 TRP CD2 CE2 doub Y N 205 TRP CD2 CE3 sing Y N 206 TRP NE1 CE2 sing Y N 207 TRP NE1 HE1 sing N N 208 TRP CE2 CZ2 sing Y N 209 TRP CE3 CZ3 doub Y N 210 TRP CE3 HE3 sing N N 211 TRP CZ2 CH2 doub Y N 212 TRP CZ2 HZ2 sing N N 213 TRP CZ3 CH2 sing Y N 214 TRP CZ3 HZ3 sing N N 215 TRP CH2 HH2 sing N N 216 TRP OXT HXT sing N N 217 TYR N CA sing N N 218 TYR N H sing N N 219 TYR N H2 sing N N 220 TYR CA C sing N N 221 TYR CA CB sing N N 222 TYR CA HA sing N N 223 TYR C O doub N N 224 TYR C OXT sing N N 225 TYR CB CG sing N N 226 TYR CB HB2 sing N N 227 TYR CB HB3 sing N N 228 TYR CG CD1 doub Y N 229 TYR CG CD2 sing Y N 230 TYR CD1 CE1 sing Y N 231 TYR CD1 HD1 sing N N 232 TYR CD2 CE2 doub Y N 233 TYR CD2 HD2 sing N N 234 TYR CE1 CZ doub Y N 235 TYR CE1 HE1 sing N N 236 TYR CE2 CZ sing Y N 237 TYR CE2 HE2 sing N N 238 TYR CZ OH sing N N 239 TYR OH HH sing N N 240 TYR OXT HXT sing N N 241 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 1YP8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_