HEADER IMMUNE SYSTEM 31-JAN-05 1YPZ TITLE IMMUNE RECEPTOR CAVEAT 1YPZ NAG I 1 HAS WRONG CHIRALITY AT ATOM C1 NAG J 1 HAS WRONG CAVEAT 2 1YPZ CHIRALITY AT ATOM C1 NAG L 1 HAS WRONG CHIRALITY AT ATOM C1 CAVEAT 3 1YPZ NAG M 1 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: H2-T22 PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 7 CHAIN: B, D; COMPND 8 SYNONYM: HDCMA22P; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: T CELL RECEPTOR DELTA; COMPND 12 CHAIN: E, G; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: T-CELL RECEPTOR GAMMA CHAIN; COMPND 16 CHAIN: F, H; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: B2M; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 18 MOL_ID: 3; SOURCE 19 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 20 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 21 ORGANISM_TAXID: 10090; SOURCE 22 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 23 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 25 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 26 MOL_ID: 4; SOURCE 27 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 28 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 29 ORGANISM_TAXID: 10090; SOURCE 30 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 31 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 32 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 33 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS H2-T22 PROTEIN, BETA-2-MICROGLOBULIN, T CELL RECEPTOR DELTA, T-CELL KEYWDS 2 RECEPTOR GAMMA CHAIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR E.J.ADAMS,K.C.GARCIA REVDAT 4 29-JUL-20 1YPZ 1 CAVEAT COMPND REMARK SEQADV REVDAT 4 2 1 HETNAM LINK SITE ATOM REVDAT 3 13-JUL-11 1YPZ 1 VERSN REVDAT 2 24-FEB-09 1YPZ 1 VERSN REVDAT 1 12-APR-05 1YPZ 0 JRNL AUTH E.J.ADAMS,Y.H.CHIEN,K.C.GARCIA JRNL TITL STRUCTURE OF A GAMMADELTA T CELL RECEPTOR IN COMPLEX WITH JRNL TITL 2 THE NONCLASSICAL MHC T22. JRNL REF SCIENCE V. 308 227 2005 JRNL REFN ISSN 0036-8075 JRNL PMID 15821084 JRNL DOI 10.1126/SCIENCE.1106885 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2977092.840 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 28542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : 0.330 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1458 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4190 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 237 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.027 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 12801 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 183 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 103.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.83000 REMARK 3 B22 (A**2) : 2.37000 REMARK 3 B33 (A**2) : 4.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM SIGMAA (A) : 0.54 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.58 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.83 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.280 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 6.650 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 11.200; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 8.190 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 12.850; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.13 REMARK 3 BSOL : 18.36 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031793. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.26500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.98500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.52500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.98500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.26500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.52500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 85270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: K, L, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET G 131 CG SD CE REMARK 470 LYS G 132 CG CD CE NZ REMARK 470 LYS G 142 CG CD CE NZ REMARK 470 ILE H 128 CG1 CG2 CD1 REMARK 470 HIS H 212 CG ND1 CD2 CE1 NE2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 PHE G 129 REMARK 475 ILE G 151 REMARK 475 ARG G 154 REMARK 475 SER G 156 REMARK 475 LYS G 157 REMARK 475 LYS G 158 REMARK 475 VAL G 160 REMARK 475 PHE G 162 REMARK 475 GLY G 183 REMARK 475 ASN G 186 REMARK 475 SER G 187 REMARK 475 THR G 189 REMARK 475 VAL G 192 REMARK 475 ASP G 203 REMARK 475 ALA G 207 REMARK 475 LYS H 122 REMARK 475 ARG H 123 REMARK 475 VAL H 139 REMARK 475 ASN H 143 REMARK 475 LEU H 144 REMARK 475 THR H 149 REMARK 475 ALA H 156 REMARK 475 GLY H 171 REMARK 475 ASN H 172 REMARK 475 THR H 196 REMARK 475 GLY H 203 REMARK 475 LYS H 204 REMARK 475 GLU H 205 REMARK 475 LYS H 216 REMARK 475 GLY H 218 REMARK 475 ALA H 219 REMARK 475 PHE H 225 REMARK 475 PRO H 226 REMARK 475 ILE H 228 REMARK 475 LYS H 229 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN G 121 CB CG CD OE1 NE2 REMARK 480 PRO G 122 C O CB CG CD REMARK 480 PRO G 123 N CA C O REMARK 480 ALA G 124 N CA C O REMARK 480 LYS G 125 CB CG CD CE NZ REMARK 480 SER G 127 N CA C O REMARK 480 ILE G 130 N CA C O REMARK 480 LYS G 132 CB REMARK 480 THR G 135 N CA C O REMARK 480 ALA G 138 N CA C O REMARK 480 CYS G 139 CB SG REMARK 480 PRO G 146 CB CG CD REMARK 480 GLU G 148 CB CG CD OE1 OE2 REMARK 480 VAL G 149 N CA C O REMARK 480 THR G 150 N CA C O REMARK 480 LEU G 153 N CA C O REMARK 480 SER G 155 N CA C O REMARK 480 ILE G 159 N CA C O REMARK 480 GLU G 161 N CA C O REMARK 480 ALA G 165 CB REMARK 480 VAL G 167 CB CG1 CG2 REMARK 480 SER G 169 CB OG REMARK 480 PRO G 170 CB CG CD REMARK 480 SER G 171 CB OG REMARK 480 ALA G 176 CB REMARK 480 LYS G 178 CB CG CD CE NZ REMARK 480 TYR G 182 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 TYR G 182 OH REMARK 480 ASP G 184 N CA C O REMARK 480 SER G 185 N CA C O REMARK 480 VAL G 188 CB CG1 CG2 REMARK 480 CYS G 190 CB SG REMARK 480 SER G 191 CB OG REMARK 480 GLN G 193 CB CG CD OE1 NE2 REMARK 480 HIS G 194 CB CG ND1 CD2 CE1 NE2 REMARK 480 ASN G 195 N CA C O REMARK 480 SER G 196 N CA C O REMARK 480 GLU G 197 CB CG CD OE1 OE2 REMARK 480 VAL G 199 CB CG1 CG2 REMARK 480 HIS G 200 CB CG ND1 CD2 CE1 NE2 REMARK 480 THR G 202 N CA C O REMARK 480 PHE G 204 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 GLU G 205 CB CG CD OE1 OE2 REMARK 480 ASP H 121 N CA C O REMARK 480 LEU H 124 N CA C O REMARK 480 ASP H 125 C O CB CG OD1 OD2 REMARK 480 ALA H 126 N CA C O REMARK 480 ASP H 127 CB CG OD1 OD2 REMARK 480 ILE H 128 N CA C O REMARK 480 SER H 129 N CA C O CB REMARK 480 PRO H 130 CB CG CD REMARK 480 LYS H 131 CB REMARK 480 THR H 133 CB REMARK 480 ILE H 134 CB REMARK 480 PHE H 135 CB REMARK 480 LEU H 136 CB CG CD1 CD2 REMARK 480 PRO H 137 N CA C O CB REMARK 480 SER H 138 CB OG REMARK 480 ALA H 140 N CA C O REMARK 480 GLU H 141 CB CG CD OE1 OE2 REMARK 480 HIS H 145 CB CG ND1 CD2 CE1 NE2 REMARK 480 LYS H 146 N CA C O REMARK 480 TYR H 150 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 TYR H 150 OH REMARK 480 CYS H 152 CB SG REMARK 480 LEU H 153 CB REMARK 480 LEU H 154 CB CG CD1 CD2 REMARK 480 GLU H 155 CB CG CD OE1 OE2 REMARK 480 PHE H 157 N CA C O CB REMARK 480 PHE H 158 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 PRO H 159 N CA C O REMARK 480 ILE H 162 CB CG1 CG2 CD1 REMARK 480 TYR H 165 CB REMARK 480 TRP H 166 CB CG CD1 CD2 NE1 CE2 CE3 REMARK 480 TRP H 166 CZ2 CZ3 CH2 REMARK 480 LYS H 167 CB REMARK 480 GLU H 168 N CA C O CB REMARK 480 LYS H 169 N CA C O REMARK 480 ASP H 170 CB CG OD1 OD2 REMARK 480 THR H 173 N CA C O REMARK 480 ILE H 174 CB CG1 CG2 CD1 REMARK 480 LEU H 175 CB REMARK 480 ASP H 176 N CA C O REMARK 480 SER H 177 CB OG REMARK 480 GLU H 179 CB REMARK 480 LEU H 183 CB CG CD1 CD2 REMARK 480 LYS H 184 N CA C O REMARK 480 ASN H 186 N CA C O REMARK 480 ASP H 187 CB CG OD1 OD2 REMARK 480 THR H 188 CB OG1 CG2 REMARK 480 MET H 190 CB REMARK 480 LYS H 191 CB REMARK 480 PRO H 198 CB CG CD REMARK 480 GLU H 199 N CA C O REMARK 480 ARG H 200 CB CG CD NE CZ NH1 NH2 REMARK 480 ALA H 201 CB REMARK 480 MET H 202 CB CG SD CE REMARK 480 HIS H 206 N CA C O REMARK 480 ARG H 207 CB CG CD NE CZ NH1 NH2 REMARK 480 ASP H 220 CB CG OD1 OD2 REMARK 480 PHE H 224 N CA C O REMARK 480 SER H 227 N CA C O CB REMARK 480 LYS H 230 N CA C CB CG CD CE REMARK 480 LYS H 230 NZ OXT REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 219 N GLY A 221 1.58 REMARK 500 NE2 HIS A 155 OG SER A 157 1.66 REMARK 500 CD2 HIS A 155 N SER A 157 1.88 REMARK 500 ND2 ASN E 24 N2 NAG J 1 2.06 REMARK 500 CE1 PHE C 84 NH2 ARG G 30 2.07 REMARK 500 CG ASN G 133 O1 NAG L 1 2.09 REMARK 500 NE2 GLN C 32 OD2 ASP D 53 2.09 REMARK 500 ND2 ASN E 24 O1 NAG J 1 2.09 REMARK 500 NE2 HIS A 155 CB SER A 157 2.10 REMARK 500 O PRO G 8 OG1 THR G 112 2.11 REMARK 500 CA ILE H 134 O6 NAG L 1 2.12 REMARK 500 CD1 LEU H 136 O7 NAG L 1 2.13 REMARK 500 CB ARG C 194 O ASP C 198 2.14 REMARK 500 NE2 GLN C 96 NE2 HIS D 31 2.15 REMARK 500 O PHE G 25 O ARG G 69 2.18 REMARK 500 O TYR C 209 N ALA C 211 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN C 255 CE LYS F 66 1545 1.35 REMARK 500 OE2 GLU A 53 NZ LYS E 157 1455 1.36 REMARK 500 CD GLN C 255 NZ LYS F 66 1545 1.96 REMARK 500 CD GLN C 255 CE LYS F 66 1545 2.13 REMARK 500 NE2 GLN C 255 NZ LYS F 66 1545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 235 C - N - CA ANGL. DEV. = 14.2 DEGREES REMARK 500 PRO E 126 C - N - CD ANGL. DEV. = -13.7 DEGREES REMARK 500 PRO F 14 C - N - CA ANGL. DEV. = 12.8 DEGREES REMARK 500 PRO F 119 C - N - CD ANGL. DEV. = -16.6 DEGREES REMARK 500 PRO G 126 C - N - CA ANGL. DEV. = 12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 14 -137.81 -132.53 REMARK 500 PRO A 15 -141.06 -60.85 REMARK 500 LEU A 17 3.01 -66.86 REMARK 500 ASP A 29 -149.58 61.74 REMARK 500 PHE A 36 129.34 -175.96 REMARK 500 SER A 37 -134.26 -144.71 REMARK 500 LYS A 39 62.21 71.00 REMARK 500 GLU A 40 122.74 -175.65 REMARK 500 PRO A 50 -73.55 -43.42 REMARK 500 TRP A 51 65.41 -46.79 REMARK 500 GLU A 56 76.13 -1.78 REMARK 500 TRP A 60 -8.46 -149.65 REMARK 500 THR A 80 -8.57 -57.76 REMARK 500 PHE A 84 -9.41 -55.57 REMARK 500 ASN A 86 52.13 39.75 REMARK 500 MET A 89 20.77 -67.78 REMARK 500 GLU A 104 65.15 175.87 REMARK 500 ASP A 106 -16.96 -49.60 REMARK 500 HIS A 108 22.76 47.30 REMARK 500 ASN A 114 82.73 -162.55 REMARK 500 TYR A 118 -120.84 -83.39 REMARK 500 SER A 120 -1.91 -177.18 REMARK 500 ASN A 129 -90.68 14.52 REMARK 500 SER A 151 55.94 -93.95 REMARK 500 GLN A 158 22.94 -168.75 REMARK 500 LEU A 160 -19.77 -49.30 REMARK 500 CYS A 164 -54.82 -26.29 REMARK 500 LYS A 174 13.68 -68.52 REMARK 500 LYS A 176 -36.85 -26.49 REMARK 500 PRO A 193 156.29 -35.81 REMARK 500 TYR A 209 -93.66 -82.02 REMARK 500 ASN A 220 -61.67 16.44 REMARK 500 GLU A 254 7.56 37.29 REMARK 500 GLN A 255 -12.27 -150.15 REMARK 500 PRO B 14 104.31 -52.47 REMARK 500 HIS B 31 -70.35 -94.02 REMARK 500 GLU B 47 -86.22 -30.96 REMARK 500 LYS B 58 -51.04 -28.79 REMARK 500 ASP B 59 35.98 -88.94 REMARK 500 TRP B 60 -2.24 49.77 REMARK 500 GLU B 74 -44.52 -10.33 REMARK 500 LYS B 75 40.78 -106.53 REMARK 500 PRO C 15 76.78 -37.92 REMARK 500 PRO C 20 -162.70 -66.45 REMARK 500 ILE C 24 78.66 -157.08 REMARK 500 ASP C 29 55.65 37.57 REMARK 500 ARG C 44 92.72 -61.25 REMARK 500 GLU C 56 -63.17 18.11 REMARK 500 GLU C 61 -0.23 -145.43 REMARK 500 MET C 89 9.21 -63.97 REMARK 500 REMARK 500 THIS ENTRY HAS 242 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR D 63 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAINS E,F,G,H HAVE NO CORRESPONDING ENTRIES IN THE REMARK 999 STANDARD DATABASES. DBREF 1YPZ A 1 260 GB 13277891 AAH03819 29 288 DBREF 1YPZ C 1 260 GB 13277891 AAH03819 29 288 DBREF 1YPZ B -2 99 UNP P61769 B2MG_HUMAN 19 118 DBREF 1YPZ D -2 99 UNP P61769 B2MG_HUMAN 19 118 DBREF 1YPZ E 1 207 PDB 1YPZ 1YPZ 1 207 DBREF 1YPZ F 1 230 PDB 1YPZ 1YPZ 1 230 DBREF 1YPZ G 1 207 PDB 1YPZ 1YPZ 1 207 DBREF 1YPZ H 1 230 PDB 1YPZ 1YPZ 1 230 SEQADV 1YPZ ASP B -1 UNP P61769 CLONING ARTIFACT SEQADV 1YPZ PRO B 0 UNP P61769 CLONING ARTIFACT SEQADV 1YPZ ASP D -1 UNP P61769 CLONING ARTIFACT SEQADV 1YPZ PRO D 0 UNP P61769 CLONING ARTIFACT SEQRES 1 A 260 GLY SER HIS SER LEU ARG TYR PHE TYR THR ALA VAL SER SEQRES 2 A 260 ARG PRO GLY LEU GLY GLU PRO TRP PHE ILE ILE VAL GLY SEQRES 3 A 260 TYR VAL ASP ASP MET GLN VAL LEU ARG PHE SER SER LYS SEQRES 4 A 260 GLU GLU THR PRO ARG MET ALA PRO TRP LEU GLU GLN GLU SEQRES 5 A 260 GLU ALA ASP ASN TRP GLU GLN GLN THR ARG ILE VAL THR SEQRES 6 A 260 ILE GLN GLY GLN LEU SER GLU ARG ASN LEU MET THR LEU SEQRES 7 A 260 VAL HIS PHE TYR ASN LYS SER MET ASP ASP SER HIS THR SEQRES 8 A 260 LEU GLN TRP LEU GLN GLY CYS ASP VAL GLU PRO ASP ARG SEQRES 9 A 260 HIS LEU CYS LEU TRP TYR ASN GLN LEU ALA TYR ASP SER SEQRES 10 A 260 GLU ASP LEU PRO THR LEU ASN GLU ASN PRO SER SER CYS SEQRES 11 A 260 THR VAL GLY ASN SER THR VAL PRO HIS ILE SER GLN ASP SEQRES 12 A 260 LEU LYS SER HIS CYS SER ASP LEU LEU GLN LYS TYR LEU SEQRES 13 A 260 GLU LYS GLY LYS GLU ARG LEU LEU ARG SER ASP PRO PRO SEQRES 14 A 260 LYS ALA HIS VAL THR ARG HIS PRO ARG PRO GLU GLY ASP SEQRES 15 A 260 VAL THR LEU ARG CYS TRP ALA LEU GLY PHE TYR PRO ALA SEQRES 16 A 260 ASP ILE THR LEU THR TRP GLN LEU ASN GLY GLU GLU LEU SEQRES 17 A 260 THR GLN ASP MET GLU LEU VAL GLU THR ARG PRO ALA GLY SEQRES 18 A 260 ASP GLY THR PHE GLN LYS TRP ALA ALA VAL VAL VAL PRO SEQRES 19 A 260 LEU GLY LYS GLU GLN SER TYR THR CYS HIS VAL TYR HIS SEQRES 20 A 260 GLU GLY LEU PRO GLU PRO LEU ILE LEU ARG TRP GLY GLY SEQRES 1 B 102 ALA ASP PRO ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SEQRES 2 B 102 SER ARG HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU SEQRES 3 B 102 ASN CYS TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU SEQRES 4 B 102 VAL ASP LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL SEQRES 5 B 102 GLU HIS SER ASP LEU SER PHE SER LYS ASP TRP SER PHE SEQRES 6 B 102 TYR LEU LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS SEQRES 7 B 102 ASP GLU TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER SEQRES 8 B 102 GLN PRO LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 260 GLY SER HIS SER LEU ARG TYR PHE TYR THR ALA VAL SER SEQRES 2 C 260 ARG PRO GLY LEU GLY GLU PRO TRP PHE ILE ILE VAL GLY SEQRES 3 C 260 TYR VAL ASP ASP MET GLN VAL LEU ARG PHE SER SER LYS SEQRES 4 C 260 GLU GLU THR PRO ARG MET ALA PRO TRP LEU GLU GLN GLU SEQRES 5 C 260 GLU ALA ASP ASN TRP GLU GLN GLN THR ARG ILE VAL THR SEQRES 6 C 260 ILE GLN GLY GLN LEU SER GLU ARG ASN LEU MET THR LEU SEQRES 7 C 260 VAL HIS PHE TYR ASN LYS SER MET ASP ASP SER HIS THR SEQRES 8 C 260 LEU GLN TRP LEU GLN GLY CYS ASP VAL GLU PRO ASP ARG SEQRES 9 C 260 HIS LEU CYS LEU TRP TYR ASN GLN LEU ALA TYR ASP SER SEQRES 10 C 260 GLU ASP LEU PRO THR LEU ASN GLU ASN PRO SER SER CYS SEQRES 11 C 260 THR VAL GLY ASN SER THR VAL PRO HIS ILE SER GLN ASP SEQRES 12 C 260 LEU LYS SER HIS CYS SER ASP LEU LEU GLN LYS TYR LEU SEQRES 13 C 260 GLU LYS GLY LYS GLU ARG LEU LEU ARG SER ASP PRO PRO SEQRES 14 C 260 LYS ALA HIS VAL THR ARG HIS PRO ARG PRO GLU GLY ASP SEQRES 15 C 260 VAL THR LEU ARG CYS TRP ALA LEU GLY PHE TYR PRO ALA SEQRES 16 C 260 ASP ILE THR LEU THR TRP GLN LEU ASN GLY GLU GLU LEU SEQRES 17 C 260 THR GLN ASP MET GLU LEU VAL GLU THR ARG PRO ALA GLY SEQRES 18 C 260 ASP GLY THR PHE GLN LYS TRP ALA ALA VAL VAL VAL PRO SEQRES 19 C 260 LEU GLY LYS GLU GLN SER TYR THR CYS HIS VAL TYR HIS SEQRES 20 C 260 GLU GLY LEU PRO GLU PRO LEU ILE LEU ARG TRP GLY GLY SEQRES 1 D 102 ALA ASP PRO ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SEQRES 2 D 102 SER ARG HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU SEQRES 3 D 102 ASN CYS TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU SEQRES 4 D 102 VAL ASP LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL SEQRES 5 D 102 GLU HIS SER ASP LEU SER PHE SER LYS ASP TRP SER PHE SEQRES 6 D 102 TYR LEU LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS SEQRES 7 D 102 ASP GLU TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER SEQRES 8 D 102 GLN PRO LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 E 207 GLY ASP GLN VAL GLU GLN SER PRO SER ALA LEU SER LEU SEQRES 2 E 207 HIS GLU GLY THR ASP SER ALA LEU ARG CYS ASN PHE THR SEQRES 3 E 207 THR THR MET ARG SER VAL GLN TRP PHE ARG GLN ASN SER SEQRES 4 E 207 ARG GLY SER LEU ILE SER LEU PHE TYR LEU ALA SER GLY SEQRES 5 E 207 THR LYS GLU ASN GLY ARG LEU LYS SER ALA PHE ASP SER SEQRES 6 E 207 LYS GLU ARG ARG TYR SER THR LEU HIS ILE ARG ASP ALA SEQRES 7 E 207 GLN LEU GLU ASP SER GLY THR TYR PHE CYS ALA ALA ASP SEQRES 8 E 207 THR TRP HIS ILE SER GLU GLY TYR GLU LEU GLY THR ASP SEQRES 9 E 207 LYS LEU VAL PHE GLY GLN GLY THR GLN VAL THR VAL GLU SEQRES 10 E 207 PRO LYS SER GLN PRO PRO ALA LYS PRO SER VAL PHE ILE SEQRES 11 E 207 MET LYS ASN GLY THR ASN VAL ALA CYS LEU VAL LYS ASP SEQRES 12 E 207 PHE TYR PRO LYS GLU VAL THR ILE SER LEU ARG SER SER SEQRES 13 E 207 LYS LYS ILE VAL GLU PHE ASP PRO ALA ILE VAL ILE SER SEQRES 14 E 207 PRO SER GLY LYS TYR SER ALA VAL LYS LEU GLY GLN TYR SEQRES 15 E 207 GLY ASP SER ASN SER VAL THR CYS SER VAL GLN HIS ASN SEQRES 16 E 207 SER GLU THR VAL HIS SER THR ASP PHE GLU ALA ALA SEQRES 1 F 230 HIS GLY LYS LEU GLU GLN PRO GLU ILE SER ILE SER ARG SEQRES 2 F 230 PRO ARG ASP GLU THR ALA GLN ILE SER CYS LYS VAL PHE SEQRES 3 F 230 ILE GLU SER PHE ARG SER VAL THR ILE HIS TRP TYR ARG SEQRES 4 F 230 GLN LYS PRO ASN GLN GLY LEU GLU PHE LEU LEU TYR VAL SEQRES 5 F 230 LEU ALA THR PRO THR HIS ILE PHE LEU ASP LYS GLU TYR SEQRES 6 F 230 LYS LYS MET GLU ALA SER LYS ASN PRO SER ALA SER THR SEQRES 7 F 230 SER ILE LEU THR ILE TYR SER LEU GLU GLU GLU ASP GLU SEQRES 8 F 230 ALA ILE TYR TYR CYS SER TYR GLY GLU GLY SER SER GLY SEQRES 9 F 230 PHE HIS LYS VAL PHE ALA GLU GLY THR LYS LEU ILE VAL SEQRES 10 F 230 ILE PRO SER ASP LYS ARG LEU ASP ALA ASP ILE SER PRO SEQRES 11 F 230 LYS PRO THR ILE PHE LEU PRO SER VAL ALA GLU THR ASN SEQRES 12 F 230 LEU HIS LYS THR GLY THR TYR LEU CYS LEU LEU GLU ALA SEQRES 13 F 230 PHE PHE PRO ASP VAL ILE ARG VAL TYR TRP LYS GLU LYS SEQRES 14 F 230 ASP GLY ASN THR ILE LEU ASP SER GLN GLU GLY ASP THR SEQRES 15 F 230 LEU LYS THR ASN ASP THR TYR MET LYS PHE SER TRP LEU SEQRES 16 F 230 THR VAL PRO GLU ARG ALA MET GLY LYS GLU HIS ARG CYS SEQRES 17 F 230 ILE VAL LYS HIS GLU ASN ASN LYS GLY GLY ALA ASP GLN SEQRES 18 F 230 ALA ILE PHE PHE PRO SER ILE LYS LYS SEQRES 1 G 207 GLY ASP GLN VAL GLU GLN SER PRO SER ALA LEU SER LEU SEQRES 2 G 207 HIS GLU GLY THR ASP SER ALA LEU ARG CYS ASN PHE THR SEQRES 3 G 207 THR THR MET ARG SER VAL GLN TRP PHE ARG GLN ASN SER SEQRES 4 G 207 ARG GLY SER LEU ILE SER LEU PHE TYR LEU ALA SER GLY SEQRES 5 G 207 THR LYS GLU ASN GLY ARG LEU LYS SER ALA PHE ASP SER SEQRES 6 G 207 LYS GLU ARG ARG TYR SER THR LEU HIS ILE ARG ASP ALA SEQRES 7 G 207 GLN LEU GLU ASP SER GLY THR TYR PHE CYS ALA ALA ASP SEQRES 8 G 207 THR TRP HIS ILE SER GLU GLY TYR GLU LEU GLY THR ASP SEQRES 9 G 207 LYS LEU VAL PHE GLY GLN GLY THR GLN VAL THR VAL GLU SEQRES 10 G 207 PRO LYS SER GLN PRO PRO ALA LYS PRO SER VAL PHE ILE SEQRES 11 G 207 MET LYS ASN GLY THR ASN VAL ALA CYS LEU VAL LYS ASP SEQRES 12 G 207 PHE TYR PRO LYS GLU VAL THR ILE SER LEU ARG SER SER SEQRES 13 G 207 LYS LYS ILE VAL GLU PHE ASP PRO ALA ILE VAL ILE SER SEQRES 14 G 207 PRO SER GLY LYS TYR SER ALA VAL LYS LEU GLY GLN TYR SEQRES 15 G 207 GLY ASP SER ASN SER VAL THR CYS SER VAL GLN HIS ASN SEQRES 16 G 207 SER GLU THR VAL HIS SER THR ASP PHE GLU ALA ALA SEQRES 1 H 230 HIS GLY LYS LEU GLU GLN PRO GLU ILE SER ILE SER ARG SEQRES 2 H 230 PRO ARG ASP GLU THR ALA GLN ILE SER CYS LYS VAL PHE SEQRES 3 H 230 ILE GLU SER PHE ARG SER VAL THR ILE HIS TRP TYR ARG SEQRES 4 H 230 GLN LYS PRO ASN GLN GLY LEU GLU PHE LEU LEU TYR VAL SEQRES 5 H 230 LEU ALA THR PRO THR HIS ILE PHE LEU ASP LYS GLU TYR SEQRES 6 H 230 LYS LYS MET GLU ALA SER LYS ASN PRO SER ALA SER THR SEQRES 7 H 230 SER ILE LEU THR ILE TYR SER LEU GLU GLU GLU ASP GLU SEQRES 8 H 230 ALA ILE TYR TYR CYS SER TYR GLY GLU GLY SER SER GLY SEQRES 9 H 230 PHE HIS LYS VAL PHE ALA GLU GLY THR LYS LEU ILE VAL SEQRES 10 H 230 ILE PRO SER ASP LYS ARG LEU ASP ALA ASP ILE SER PRO SEQRES 11 H 230 LYS PRO THR ILE PHE LEU PRO SER VAL ALA GLU THR ASN SEQRES 12 H 230 LEU HIS LYS THR GLY THR TYR LEU CYS LEU LEU GLU ALA SEQRES 13 H 230 PHE PHE PRO ASP VAL ILE ARG VAL TYR TRP LYS GLU LYS SEQRES 14 H 230 ASP GLY ASN THR ILE LEU ASP SER GLN GLU GLY ASP THR SEQRES 15 H 230 LEU LYS THR ASN ASP THR TYR MET LYS PHE SER TRP LEU SEQRES 16 H 230 THR VAL PRO GLU ARG ALA MET GLY LYS GLU HIS ARG CYS SEQRES 17 H 230 ILE VAL LYS HIS GLU ASN ASN LYS GLY GLY ALA ASP GLN SEQRES 18 H 230 ALA ILE PHE PHE PRO SER ILE LYS LYS MODRES 1YPZ ASN E 24 ASN GLYCOSYLATION SITE MODRES 1YPZ ASN E 133 ASN GLYCOSYLATION SITE MODRES 1YPZ ASN F 186 ASN GLYCOSYLATION SITE MODRES 1YPZ ASN G 24 ASN GLYCOSYLATION SITE MODRES 1YPZ ASN G 133 ASN GLYCOSYLATION SITE HET NAG I 1 15 HET NAG I 2 15 HET MAN I 3 12 HET NAG J 1 15 HET NAG J 2 15 HET NAG K 1 15 HET NAG K 2 15 HET NAG L 1 15 HET NAG L 2 15 HET MAN L 3 12 HET NAG M 1 15 HET NAG M 2 14 HET FUC M 3 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE FORMUL 9 NAG 10(C8 H15 N O6) FORMUL 9 MAN 2(C6 H12 O6) FORMUL 13 FUC C6 H12 O5 HELIX 1 1 TRP A 60 PHE A 84 1 25 HELIX 2 2 PRO A 105 HIS A 108 5 4 HELIX 3 3 ASP A 159 LYS A 174 1 16 HELIX 4 4 GLU C 61 TYR C 85 1 25 HELIX 5 5 HIS C 163 LEU C 172 1 10 HELIX 6 6 LYS C 176 ARG C 181 1 6 HELIX 7 7 LEU C 224 MET C 228 5 5 HELIX 8 8 GLY C 252 GLN C 255 5 4 HELIX 9 9 GLN E 79 SER E 83 5 5 HELIX 10 10 ILE F 27 VAL F 33 5 7 HELIX 11 11 GLU F 87 GLU F 91 5 5 HELIX 12 12 SER F 138 LYS F 146 1 9 HELIX 13 13 PRO F 198 MET F 202 5 5 HELIX 14 14 GLN G 79 SER G 83 5 5 HELIX 15 15 THR G 202 PHE G 204 5 3 HELIX 16 16 GLU H 87 GLU H 91 5 5 HELIX 17 17 SER H 138 LYS H 146 1 9 SHEET 1 A 6 ARG A 44 MET A 45 0 SHEET 2 A 6 MET A 31 ARG A 35 -1 N ARG A 35 O ARG A 44 SHEET 3 A 6 TRP A 21 VAL A 28 -1 N GLY A 26 O LEU A 34 SHEET 4 A 6 HIS A 3 VAL A 12 -1 N PHE A 8 O VAL A 25 SHEET 5 A 6 THR A 94 GLU A 104 -1 O TRP A 97 N TYR A 9 SHEET 6 A 6 LEU A 109 ALA A 117 -1 O TYR A 113 N GLY A 100 SHEET 1 B 4 VAL A 189 ARG A 191 0 SHEET 2 B 4 VAL A 199 PHE A 208 -1 O ARG A 202 N THR A 190 SHEET 3 B 4 THR A 240 VAL A 249 -1 O VAL A 249 N VAL A 199 SHEET 4 B 4 GLU A 229 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 C 4 VAL A 189 ARG A 191 0 SHEET 2 C 4 VAL A 199 PHE A 208 -1 O ARG A 202 N THR A 190 SHEET 3 C 4 THR A 240 VAL A 249 -1 O VAL A 249 N VAL A 199 SHEET 4 C 4 ARG A 234 ALA A 236 -1 N ARG A 234 O GLN A 242 SHEET 1 D 3 THR A 214 GLN A 218 0 SHEET 2 D 3 THR A 258 TYR A 262 -1 O HIS A 260 N THR A 216 SHEET 3 D 3 LEU A 270 LEU A 272 -1 O LEU A 270 N VAL A 261 SHEET 1 E 4 LYS B 6 SER B 11 0 SHEET 2 E 4 ASN B 21 PHE B 30 -1 O TYR B 26 N GLN B 8 SHEET 3 E 4 PHE B 62 PHE B 70 -1 O LEU B 64 N VAL B 27 SHEET 4 E 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 F 4 LYS B 6 SER B 11 0 SHEET 2 F 4 ASN B 21 PHE B 30 -1 O TYR B 26 N GLN B 8 SHEET 3 F 4 PHE B 62 PHE B 70 -1 O LEU B 64 N VAL B 27 SHEET 4 F 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 G 4 GLU B 44 ARG B 45 0 SHEET 2 G 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 G 4 TYR B 78 ASN B 83 -1 O ARG B 81 N ASP B 38 SHEET 4 G 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 H 6 MET C 31 LEU C 34 0 SHEET 2 H 6 TRP C 21 VAL C 28 -1 N VAL C 28 O MET C 31 SHEET 3 H 6 HIS C 3 VAL C 12 -1 N VAL C 12 O TRP C 21 SHEET 4 H 6 THR C 94 VAL C 103 -1 O LEU C 95 N ALA C 11 SHEET 5 H 6 LEU C 111 TYR C 118 -1 O GLN C 115 N LEU C 98 SHEET 6 H 6 SER C 131 SER C 132 -1 O SER C 131 N TRP C 112 SHEET 1 I 3 LYS C 186 HIS C 188 0 SHEET 2 I 3 VAL C 199 PHE C 208 -1 O TRP C 204 N HIS C 188 SHEET 3 I 3 ARG C 191 PRO C 193 -1 N HIS C 192 O THR C 200 SHEET 1 J 4 LYS C 186 HIS C 188 0 SHEET 2 J 4 VAL C 199 PHE C 208 -1 O TRP C 204 N HIS C 188 SHEET 3 J 4 PHE C 241 VAL C 249 -1 O PHE C 241 N PHE C 208 SHEET 4 J 4 GLU C 229 LEU C 230 -1 N GLU C 229 O ALA C 246 SHEET 1 K 3 THR C 214 LEU C 219 0 SHEET 2 K 3 TYR C 257 TYR C 262 -1 O HIS C 260 N THR C 216 SHEET 3 K 3 LEU C 270 LEU C 272 -1 O LEU C 270 N VAL C 261 SHEET 1 L 4 VAL D 9 SER D 11 0 SHEET 2 L 4 ASN D 21 PHE D 30 -1 O ASN D 24 N TYR D 10 SHEET 3 L 4 PHE D 62 PHE D 70 -1 O LEU D 64 N VAL D 27 SHEET 4 L 4 GLU D 50 HIS D 51 -1 N GLU D 50 O TYR D 67 SHEET 1 M 4 VAL D 9 SER D 11 0 SHEET 2 M 4 ASN D 21 PHE D 30 -1 O ASN D 24 N TYR D 10 SHEET 3 M 4 PHE D 62 PHE D 70 -1 O LEU D 64 N VAL D 27 SHEET 4 M 4 SER D 55 PHE D 56 -1 N SER D 55 O TYR D 63 SHEET 1 N 4 GLU D 44 ARG D 45 0 SHEET 2 N 4 GLU D 36 LYS D 41 -1 N LYS D 41 O GLU D 44 SHEET 3 N 4 TYR D 78 ASN D 83 -1 O ARG D 81 N ASP D 38 SHEET 4 N 4 LYS D 91 LYS D 94 -1 O LYS D 91 N VAL D 82 SHEET 1 O 5 VAL E 4 GLN E 6 0 SHEET 2 O 5 SER E 19 PHE E 25 -1 O ASN E 24 N GLU E 5 SHEET 3 O 5 TYR E 70 ILE E 75 -1 O SER E 71 N CYS E 23 SHEET 4 O 5 LEU E 59 PHE E 63 -1 N LYS E 60 O HIS E 74 SHEET 5 O 5 GLY E 52 ASN E 56 -1 N GLY E 52 O PHE E 63 SHEET 1 P10 ILE E 44 LEU E 49 0 SHEET 2 P10 SER E 31 GLN E 37 -1 N VAL E 32 O LEU E 49 SHEET 3 P10 GLY E 84 ASP E 91 -1 O ALA E 89 N GLN E 33 SHEET 4 P10 THR E 112 GLU E 117 -1 O THR E 112 N TYR E 86 SHEET 5 P10 ALA E 10 HIS E 14 1 N LEU E 13 O GLU E 117 SHEET 6 P10 ALA G 10 HIS G 14 -1 O SER G 12 N ALA E 10 SHEET 7 P10 THR G 112 GLU G 117 1 O GLU G 117 N LEU G 13 SHEET 8 P10 GLY G 84 ILE G 95 -1 N GLY G 84 O VAL G 114 SHEET 9 P10 SER G 31 GLN G 37 -1 N GLN G 33 O ALA G 89 SHEET 10 P10 LEU G 43 LEU G 49 -1 O LEU G 46 N TRP G 34 SHEET 1 Q 8 VAL E 107 PHE E 108 0 SHEET 2 Q 8 GLY E 84 ASP E 91 -1 N ALA E 90 O VAL E 107 SHEET 3 Q 8 THR E 112 GLU E 117 -1 O THR E 112 N TYR E 86 SHEET 4 Q 8 ALA E 10 HIS E 14 1 N LEU E 13 O GLU E 117 SHEET 5 Q 8 ALA G 10 HIS G 14 -1 O SER G 12 N ALA E 10 SHEET 6 Q 8 THR G 112 GLU G 117 1 O GLU G 117 N LEU G 13 SHEET 7 Q 8 GLY G 84 ILE G 95 -1 N GLY G 84 O VAL G 114 SHEET 8 Q 8 LEU G 101 PHE G 108 -1 O VAL G 107 N ALA G 90 SHEET 1 R 4 SER E 127 ASN E 133 0 SHEET 2 R 4 ASN E 136 PHE E 144 -1 O ALA E 138 N MET E 131 SHEET 3 R 4 TYR E 174 LYS E 178 -1 O LYS E 178 N CYS E 139 SHEET 4 R 4 ALA E 165 ILE E 168 -1 N ALA E 165 O VAL E 177 SHEET 1 S 3 THR E 150 ARG E 154 0 SHEET 2 S 3 THR E 189 HIS E 194 -1 O GLN E 193 N THR E 150 SHEET 3 S 3 GLU E 197 HIS E 200 -1 O VAL E 199 N VAL E 192 SHEET 1 T 2 LYS E 158 GLU E 161 0 SHEET 2 T 2 GLY E 180 TYR E 182 -1 O GLN E 181 N VAL E 160 SHEET 1 U 5 LEU F 4 GLU F 5 0 SHEET 2 U 5 ALA F 19 VAL F 25 -1 O LYS F 24 N GLU F 5 SHEET 3 U 5 THR F 78 ILE F 83 -1 O LEU F 81 N ILE F 21 SHEET 4 U 5 LYS F 67 LYS F 72 -1 N ALA F 70 O THR F 82 SHEET 5 U 5 ILE F 59 ASP F 62 -1 N LEU F 61 O MET F 68 SHEET 1 V 5 SER F 10 PRO F 14 0 SHEET 2 V 5 THR F 113 ILE F 118 1 O LYS F 114 N ILE F 11 SHEET 3 V 5 ILE F 93 TYR F 98 -1 N TYR F 94 O THR F 113 SHEET 4 V 5 ILE F 35 GLN F 40 -1 N HIS F 36 O SER F 97 SHEET 5 V 5 GLU F 47 VAL F 52 -1 O GLU F 47 N ARG F 39 SHEET 1 W 4 SER F 10 PRO F 14 0 SHEET 2 W 4 THR F 113 ILE F 118 1 O LYS F 114 N ILE F 11 SHEET 3 W 4 ILE F 93 TYR F 98 -1 N TYR F 94 O THR F 113 SHEET 4 W 4 VAL F 108 PHE F 109 -1 O VAL F 108 N TYR F 98 SHEET 1 X 4 ILE F 134 PHE F 135 0 SHEET 2 X 4 GLY F 148 PHE F 157 -1 O LEU F 151 N PHE F 135 SHEET 3 X 4 THR F 188 VAL F 197 -1 O VAL F 197 N GLY F 148 SHEET 4 X 4 GLN F 178 GLU F 179 -1 N GLN F 178 O TRP F 194 SHEET 1 Y 4 ILE F 134 PHE F 135 0 SHEET 2 Y 4 GLY F 148 PHE F 157 -1 O LEU F 151 N PHE F 135 SHEET 3 Y 4 THR F 188 VAL F 197 -1 O VAL F 197 N GLY F 148 SHEET 4 Y 4 LEU F 183 THR F 185 -1 N LEU F 183 O MET F 190 SHEET 1 Z 3 ARG F 163 LYS F 167 0 SHEET 2 Z 3 HIS F 206 LYS F 211 -1 O ILE F 209 N TYR F 165 SHEET 3 Z 3 GLN F 221 PHE F 225 -1 O GLN F 221 N VAL F 210 SHEET 1 AA 4 GLU G 5 GLN G 6 0 SHEET 2 AA 4 SER G 19 ASN G 24 -1 O ASN G 24 N GLU G 5 SHEET 3 AA 4 TYR G 70 ILE G 75 -1 O ILE G 75 N SER G 19 SHEET 4 AA 4 LEU G 59 PHE G 63 -1 N ALA G 62 O THR G 72 SHEET 1 AB 3 SER G 127 PHE G 129 0 SHEET 2 AB 3 LEU G 140 PHE G 144 -1 O LYS G 142 N SER G 127 SHEET 3 AB 3 TYR G 174 SER G 175 -1 O TYR G 174 N PHE G 144 SHEET 1 AC 3 THR G 150 ARG G 154 0 SHEET 2 AC 3 THR G 189 HIS G 194 -1 O GLN G 193 N THR G 150 SHEET 3 AC 3 GLU G 197 HIS G 200 -1 O VAL G 199 N VAL G 192 SHEET 1 AD 5 SER H 10 PRO H 14 0 SHEET 2 AD 5 THR H 113 ILE H 118 1 O ILE H 116 N ILE H 11 SHEET 3 AD 5 ILE H 93 SER H 97 -1 N TYR H 94 O THR H 113 SHEET 4 AD 5 ILE H 35 GLN H 40 -1 N TYR H 38 O TYR H 95 SHEET 5 AD 5 GLU H 47 VAL H 52 -1 O LEU H 50 N TRP H 37 SHEET 1 AE 4 ALA H 19 LYS H 24 0 SHEET 2 AE 4 THR H 78 ILE H 83 -1 O LEU H 81 N ILE H 21 SHEET 3 AE 4 LYS H 67 ALA H 70 -1 N ALA H 70 O THR H 82 SHEET 4 AE 4 PHE H 60 ASP H 62 -1 N LEU H 61 O MET H 68 SHEET 1 AF 2 ILE H 134 PHE H 135 0 SHEET 2 AF 2 LEU H 151 CYS H 152 -1 O LEU H 151 N PHE H 135 SHEET 1 AG 2 GLN H 178 GLU H 179 0 SHEET 2 AG 2 SER H 193 TRP H 194 -1 O TRP H 194 N GLN H 178 SHEET 1 AH 2 LEU H 183 LYS H 184 0 SHEET 2 AH 2 TYR H 189 MET H 190 -1 O MET H 190 N LEU H 183 SSBOND 1 CYS A 101 CYS A 164 1555 1555 1.85 SSBOND 2 CYS A 110 CYS A 133 1555 1555 2.05 SSBOND 3 CYS A 203 CYS A 259 1555 1555 1.84 SSBOND 4 CYS B 25 CYS B 80 1555 1555 2.03 SSBOND 5 CYS C 101 CYS C 164 1555 1555 2.00 SSBOND 6 CYS C 203 CYS C 259 1555 1555 2.03 SSBOND 7 CYS D 25 CYS D 80 1555 1555 1.89 SSBOND 8 CYS E 23 CYS E 88 1555 1555 2.03 SSBOND 9 CYS E 139 CYS E 190 1555 1555 2.02 SSBOND 10 CYS F 152 CYS F 208 1555 1555 2.04 SSBOND 11 CYS G 23 CYS G 88 1555 1555 2.12 SSBOND 12 CYS G 139 CYS G 190 1555 1555 2.03 SSBOND 13 CYS H 23 CYS H 96 1555 1555 2.26 SSBOND 14 CYS H 152 CYS H 208 1555 1555 2.02 LINK NH2 ARG E 22 O7 NAG J 2 1555 1555 1.72 LINK ND2 ASN E 24 C1 NAG J 1 1555 1555 1.70 LINK ND2 ASN E 133 C1 NAG I 1 1555 1555 1.73 LINK ND2 ASN F 186 C1 NAG K 1 1555 1555 1.73 LINK CB ASN F 186 O1 NAG K 1 1555 1555 1.67 LINK ND2 ASN F 186 O5 NAG K 1 1555 1555 1.71 LINK CE1 PHE F 224 O2 MAN I 3 1555 1555 2.03 LINK ND2 ASN G 24 C1 NAG M 1 1555 1555 1.72 LINK ND2 ASN G 133 C1 NAG L 1 1555 1555 1.59 LINK ND2 ASN G 133 O1 NAG L 1 1555 1555 1.52 LINK N ILE H 134 O6 NAG L 1 1555 1555 1.86 LINK CB ILE H 134 O6 NAG L 1 1555 1555 1.98 LINK O ILE H 134 O5 NAG L 1 1555 1555 1.99 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.39 LINK O4 NAG I 2 C1 MAN I 3 1555 1555 1.39 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.39 LINK O4 NAG K 1 C1 NAG K 2 1555 1555 1.39 LINK O4 NAG L 1 C1 NAG L 2 1555 1555 1.39 LINK O4 NAG L 2 C1 MAN L 3 1555 1555 1.39 LINK O4 NAG M 1 C1 NAG M 2 1555 1555 1.39 LINK O6 NAG M 1 C1 FUC M 3 1555 1555 1.42 CRYST1 110.530 113.050 167.970 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009047 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008846 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005953 0.00000