data_1YQ5 # _entry.id 1YQ5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YQ5 pdb_00001yq5 10.2210/pdb1yq5/pdb RCSB RCSB031799 ? ? WWPDB D_1000031799 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-04-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_entry_details 5 4 'Structure model' pdbx_modification_feature 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YQ5 _pdbx_database_status.recvd_initial_deposition_date 2005-02-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1YQ6 'The same protein, another space group' unspecified PDB 1YQ8 'The same protein, another domain' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Merckel, M.C.' 1 'Huiskonen, J.T.' 2 'Goldman, A.' 3 'Bamford, D.H.' 4 'Tuma, R.' 5 # _citation.id primary _citation.title 'The structure of the bacteriophage PRD1 spike sheds light on the evolution of viral capsid architecture.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 18 _citation.page_first 161 _citation.page_last 170 _citation.year 2005 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15837420 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2005.03.019 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Merckel, M.C.' 1 ? primary 'Huiskonen, J.T.' 2 ? primary 'Bamford, D.H.' 3 ? primary 'Goldman, A.' 4 ? primary 'Tuma, R.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Minor capsid protein' 14594.293 2 ? ? 'residues 197-340' ? 2 water nat water 18.015 230 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PRD1 vertex protein P5, Protein P5' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GGVTDALSL(MSE)YSTSTGGPASIAANALTDFDLSGALTVNSVGTGLTKSAAGIQLAAGKSGLYQIT(MSE)TVKNNTV TTGNYLLRVKYGSSDFVVACPASSLTAGGTISLLIYCNVLGVVSLDVLKFSLCNDGAALSNYIINITAAKIN ; _entity_poly.pdbx_seq_one_letter_code_can ;GGVTDALSLMYSTSTGGPASIAANALTDFDLSGALTVNSVGTGLTKSAAGIQLAAGKSGLYQITMTVKNNTVTTGNYLLR VKYGSSDFVVACPASSLTAGGTISLLIYCNVLGVVSLDVLKFSLCNDGAALSNYIINITAAKIN ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 VAL n 1 4 THR n 1 5 ASP n 1 6 ALA n 1 7 LEU n 1 8 SER n 1 9 LEU n 1 10 MSE n 1 11 TYR n 1 12 SER n 1 13 THR n 1 14 SER n 1 15 THR n 1 16 GLY n 1 17 GLY n 1 18 PRO n 1 19 ALA n 1 20 SER n 1 21 ILE n 1 22 ALA n 1 23 ALA n 1 24 ASN n 1 25 ALA n 1 26 LEU n 1 27 THR n 1 28 ASP n 1 29 PHE n 1 30 ASP n 1 31 LEU n 1 32 SER n 1 33 GLY n 1 34 ALA n 1 35 LEU n 1 36 THR n 1 37 VAL n 1 38 ASN n 1 39 SER n 1 40 VAL n 1 41 GLY n 1 42 THR n 1 43 GLY n 1 44 LEU n 1 45 THR n 1 46 LYS n 1 47 SER n 1 48 ALA n 1 49 ALA n 1 50 GLY n 1 51 ILE n 1 52 GLN n 1 53 LEU n 1 54 ALA n 1 55 ALA n 1 56 GLY n 1 57 LYS n 1 58 SER n 1 59 GLY n 1 60 LEU n 1 61 TYR n 1 62 GLN n 1 63 ILE n 1 64 THR n 1 65 MSE n 1 66 THR n 1 67 VAL n 1 68 LYS n 1 69 ASN n 1 70 ASN n 1 71 THR n 1 72 VAL n 1 73 THR n 1 74 THR n 1 75 GLY n 1 76 ASN n 1 77 TYR n 1 78 LEU n 1 79 LEU n 1 80 ARG n 1 81 VAL n 1 82 LYS n 1 83 TYR n 1 84 GLY n 1 85 SER n 1 86 SER n 1 87 ASP n 1 88 PHE n 1 89 VAL n 1 90 VAL n 1 91 ALA n 1 92 CYS n 1 93 PRO n 1 94 ALA n 1 95 SER n 1 96 SER n 1 97 LEU n 1 98 THR n 1 99 ALA n 1 100 GLY n 1 101 GLY n 1 102 THR n 1 103 ILE n 1 104 SER n 1 105 LEU n 1 106 LEU n 1 107 ILE n 1 108 TYR n 1 109 CYS n 1 110 ASN n 1 111 VAL n 1 112 LEU n 1 113 GLY n 1 114 VAL n 1 115 VAL n 1 116 SER n 1 117 LEU n 1 118 ASP n 1 119 VAL n 1 120 LEU n 1 121 LYS n 1 122 PHE n 1 123 SER n 1 124 LEU n 1 125 CYS n 1 126 ASN n 1 127 ASP n 1 128 GLY n 1 129 ALA n 1 130 ALA n 1 131 LEU n 1 132 SER n 1 133 ASN n 1 134 TYR n 1 135 ILE n 1 136 ILE n 1 137 ASN n 1 138 ILE n 1 139 THR n 1 140 ALA n 1 141 ALA n 1 142 LYS n 1 143 ILE n 1 144 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Tectivirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Enterobacteria phage PRD1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10658 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 197 197 GLY GLY A . n A 1 2 GLY 2 198 198 GLY GLY A . n A 1 3 VAL 3 199 199 VAL VAL A . n A 1 4 THR 4 200 200 THR THR A . n A 1 5 ASP 5 201 201 ASP ASP A . n A 1 6 ALA 6 202 202 ALA ALA A . n A 1 7 LEU 7 203 203 LEU LEU A . n A 1 8 SER 8 204 204 SER SER A . n A 1 9 LEU 9 205 205 LEU LEU A . n A 1 10 MSE 10 206 206 MSE MSE A . n A 1 11 TYR 11 207 207 TYR TYR A . n A 1 12 SER 12 208 208 SER SER A . n A 1 13 THR 13 209 209 THR THR A . n A 1 14 SER 14 210 210 SER SER A . n A 1 15 THR 15 211 211 THR THR A . n A 1 16 GLY 16 212 212 GLY GLY A . n A 1 17 GLY 17 213 213 GLY GLY A . n A 1 18 PRO 18 214 214 PRO PRO A . n A 1 19 ALA 19 215 215 ALA ALA A . n A 1 20 SER 20 216 216 SER SER A . n A 1 21 ILE 21 217 217 ILE ILE A . n A 1 22 ALA 22 218 218 ALA ALA A . n A 1 23 ALA 23 219 219 ALA ALA A . n A 1 24 ASN 24 220 220 ASN ASN A . n A 1 25 ALA 25 221 221 ALA ALA A . n A 1 26 LEU 26 222 222 LEU LEU A . n A 1 27 THR 27 223 223 THR THR A . n A 1 28 ASP 28 224 224 ASP ASP A . n A 1 29 PHE 29 225 225 PHE PHE A . n A 1 30 ASP 30 226 226 ASP ASP A . n A 1 31 LEU 31 227 227 LEU LEU A . n A 1 32 SER 32 228 228 SER SER A . n A 1 33 GLY 33 229 229 GLY GLY A . n A 1 34 ALA 34 230 230 ALA ALA A . n A 1 35 LEU 35 231 231 LEU LEU A . n A 1 36 THR 36 232 232 THR THR A . n A 1 37 VAL 37 233 233 VAL VAL A . n A 1 38 ASN 38 234 234 ASN ASN A . n A 1 39 SER 39 235 235 SER SER A . n A 1 40 VAL 40 236 236 VAL VAL A . n A 1 41 GLY 41 237 237 GLY GLY A . n A 1 42 THR 42 238 238 THR THR A . n A 1 43 GLY 43 239 239 GLY GLY A . n A 1 44 LEU 44 240 240 LEU LEU A . n A 1 45 THR 45 241 241 THR THR A . n A 1 46 LYS 46 242 242 LYS LYS A . n A 1 47 SER 47 243 243 SER SER A . n A 1 48 ALA 48 244 244 ALA ALA A . n A 1 49 ALA 49 245 245 ALA ALA A . n A 1 50 GLY 50 246 246 GLY GLY A . n A 1 51 ILE 51 247 247 ILE ILE A . n A 1 52 GLN 52 248 248 GLN GLN A . n A 1 53 LEU 53 249 249 LEU LEU A . n A 1 54 ALA 54 250 250 ALA ALA A . n A 1 55 ALA 55 251 251 ALA ALA A . n A 1 56 GLY 56 252 252 GLY GLY A . n A 1 57 LYS 57 253 253 LYS LYS A . n A 1 58 SER 58 254 254 SER SER A . n A 1 59 GLY 59 255 255 GLY GLY A . n A 1 60 LEU 60 256 256 LEU LEU A . n A 1 61 TYR 61 257 257 TYR TYR A . n A 1 62 GLN 62 258 258 GLN GLN A . n A 1 63 ILE 63 259 259 ILE ILE A . n A 1 64 THR 64 260 260 THR THR A . n A 1 65 MSE 65 261 261 MSE MSE A . n A 1 66 THR 66 262 262 THR THR A . n A 1 67 VAL 67 263 263 VAL VAL A . n A 1 68 LYS 68 264 264 LYS LYS A . n A 1 69 ASN 69 265 265 ASN ASN A . n A 1 70 ASN 70 266 266 ASN ASN A . n A 1 71 THR 71 267 267 THR THR A . n A 1 72 VAL 72 268 268 VAL VAL A . n A 1 73 THR 73 269 269 THR THR A . n A 1 74 THR 74 270 270 THR THR A . n A 1 75 GLY 75 271 271 GLY GLY A . n A 1 76 ASN 76 272 272 ASN ASN A . n A 1 77 TYR 77 273 273 TYR TYR A . n A 1 78 LEU 78 274 274 LEU LEU A . n A 1 79 LEU 79 275 275 LEU LEU A . n A 1 80 ARG 80 276 276 ARG ARG A . n A 1 81 VAL 81 277 277 VAL VAL A . n A 1 82 LYS 82 278 278 LYS LYS A . n A 1 83 TYR 83 279 279 TYR TYR A . n A 1 84 GLY 84 280 280 GLY GLY A . n A 1 85 SER 85 281 281 SER SER A . n A 1 86 SER 86 282 282 SER SER A . n A 1 87 ASP 87 283 283 ASP ASP A . n A 1 88 PHE 88 284 284 PHE PHE A . n A 1 89 VAL 89 285 285 VAL VAL A . n A 1 90 VAL 90 286 286 VAL VAL A . n A 1 91 ALA 91 287 287 ALA ALA A . n A 1 92 CYS 92 288 288 CYS CYS A . n A 1 93 PRO 93 289 289 PRO PRO A . n A 1 94 ALA 94 290 290 ALA ALA A . n A 1 95 SER 95 291 291 SER SER A . n A 1 96 SER 96 292 292 SER SER A . n A 1 97 LEU 97 293 293 LEU LEU A . n A 1 98 THR 98 294 294 THR THR A . n A 1 99 ALA 99 295 295 ALA ALA A . n A 1 100 GLY 100 296 296 GLY GLY A . n A 1 101 GLY 101 297 297 GLY GLY A . n A 1 102 THR 102 298 298 THR THR A . n A 1 103 ILE 103 299 299 ILE ILE A . n A 1 104 SER 104 300 300 SER SER A . n A 1 105 LEU 105 301 301 LEU LEU A . n A 1 106 LEU 106 302 302 LEU LEU A . n A 1 107 ILE 107 303 303 ILE ILE A . n A 1 108 TYR 108 304 304 TYR TYR A . n A 1 109 CYS 109 305 305 CYS CYS A . n A 1 110 ASN 110 306 306 ASN ASN A . n A 1 111 VAL 111 307 307 VAL VAL A . n A 1 112 LEU 112 308 308 LEU LEU A . n A 1 113 GLY 113 309 309 GLY GLY A . n A 1 114 VAL 114 310 310 VAL VAL A . n A 1 115 VAL 115 311 311 VAL VAL A . n A 1 116 SER 116 312 312 SER SER A . n A 1 117 LEU 117 313 313 LEU LEU A . n A 1 118 ASP 118 314 314 ASP ASP A . n A 1 119 VAL 119 315 315 VAL VAL A . n A 1 120 LEU 120 316 316 LEU LEU A . n A 1 121 LYS 121 317 317 LYS LYS A . n A 1 122 PHE 122 318 318 PHE PHE A . n A 1 123 SER 123 319 319 SER SER A . n A 1 124 LEU 124 320 320 LEU LEU A . n A 1 125 CYS 125 321 321 CYS CYS A . n A 1 126 ASN 126 322 322 ASN ASN A . n A 1 127 ASP 127 323 323 ASP ASP A . n A 1 128 GLY 128 324 324 GLY GLY A . n A 1 129 ALA 129 325 325 ALA ALA A . n A 1 130 ALA 130 326 326 ALA ALA A . n A 1 131 LEU 131 327 327 LEU LEU A . n A 1 132 SER 132 328 328 SER SER A . n A 1 133 ASN 133 329 329 ASN ASN A . n A 1 134 TYR 134 330 330 TYR TYR A . n A 1 135 ILE 135 331 331 ILE ILE A . n A 1 136 ILE 136 332 332 ILE ILE A . n A 1 137 ASN 137 333 333 ASN ASN A . n A 1 138 ILE 138 334 334 ILE ILE A . n A 1 139 THR 139 335 335 THR THR A . n A 1 140 ALA 140 336 336 ALA ALA A . n A 1 141 ALA 141 337 337 ALA ALA A . n A 1 142 LYS 142 338 338 LYS LYS A . n A 1 143 ILE 143 339 339 ILE ILE A . n A 1 144 ASN 144 340 340 ASN ASN A . n B 1 1 GLY 1 197 197 GLY GLY B . n B 1 2 GLY 2 198 198 GLY GLY B . n B 1 3 VAL 3 199 199 VAL VAL B . n B 1 4 THR 4 200 200 THR THR B . n B 1 5 ASP 5 201 201 ASP ASP B . n B 1 6 ALA 6 202 202 ALA ALA B . n B 1 7 LEU 7 203 203 LEU LEU B . n B 1 8 SER 8 204 204 SER SER B . n B 1 9 LEU 9 205 205 LEU LEU B . n B 1 10 MSE 10 206 206 MSE MSE B . n B 1 11 TYR 11 207 207 TYR TYR B . n B 1 12 SER 12 208 208 SER SER B . n B 1 13 THR 13 209 209 THR THR B . n B 1 14 SER 14 210 210 SER SER B . n B 1 15 THR 15 211 211 THR THR B . n B 1 16 GLY 16 212 212 GLY GLY B . n B 1 17 GLY 17 213 213 GLY GLY B . n B 1 18 PRO 18 214 214 PRO PRO B . n B 1 19 ALA 19 215 215 ALA ALA B . n B 1 20 SER 20 216 216 SER SER B . n B 1 21 ILE 21 217 217 ILE ILE B . n B 1 22 ALA 22 218 218 ALA ALA B . n B 1 23 ALA 23 219 219 ALA ALA B . n B 1 24 ASN 24 220 220 ASN ASN B . n B 1 25 ALA 25 221 221 ALA ALA B . n B 1 26 LEU 26 222 222 LEU LEU B . n B 1 27 THR 27 223 223 THR THR B . n B 1 28 ASP 28 224 224 ASP ASP B . n B 1 29 PHE 29 225 225 PHE PHE B . n B 1 30 ASP 30 226 226 ASP ASP B . n B 1 31 LEU 31 227 227 LEU LEU B . n B 1 32 SER 32 228 228 SER SER B . n B 1 33 GLY 33 229 229 GLY GLY B . n B 1 34 ALA 34 230 230 ALA ALA B . n B 1 35 LEU 35 231 231 LEU LEU B . n B 1 36 THR 36 232 232 THR THR B . n B 1 37 VAL 37 233 233 VAL VAL B . n B 1 38 ASN 38 234 234 ASN ASN B . n B 1 39 SER 39 235 235 SER SER B . n B 1 40 VAL 40 236 236 VAL VAL B . n B 1 41 GLY 41 237 237 GLY GLY B . n B 1 42 THR 42 238 238 THR THR B . n B 1 43 GLY 43 239 239 GLY GLY B . n B 1 44 LEU 44 240 240 LEU LEU B . n B 1 45 THR 45 241 241 THR THR B . n B 1 46 LYS 46 242 242 LYS LYS B . n B 1 47 SER 47 243 243 SER SER B . n B 1 48 ALA 48 244 244 ALA ALA B . n B 1 49 ALA 49 245 245 ALA ALA B . n B 1 50 GLY 50 246 246 GLY GLY B . n B 1 51 ILE 51 247 247 ILE ILE B . n B 1 52 GLN 52 248 248 GLN GLN B . n B 1 53 LEU 53 249 249 LEU LEU B . n B 1 54 ALA 54 250 250 ALA ALA B . n B 1 55 ALA 55 251 251 ALA ALA B . n B 1 56 GLY 56 252 252 GLY GLY B . n B 1 57 LYS 57 253 253 LYS LYS B . n B 1 58 SER 58 254 254 SER SER B . n B 1 59 GLY 59 255 255 GLY GLY B . n B 1 60 LEU 60 256 256 LEU LEU B . n B 1 61 TYR 61 257 257 TYR TYR B . n B 1 62 GLN 62 258 258 GLN GLN B . n B 1 63 ILE 63 259 259 ILE ILE B . n B 1 64 THR 64 260 260 THR THR B . n B 1 65 MSE 65 261 261 MSE MSE B . n B 1 66 THR 66 262 262 THR THR B . n B 1 67 VAL 67 263 263 VAL VAL B . n B 1 68 LYS 68 264 264 LYS LYS B . n B 1 69 ASN 69 265 265 ASN ASN B . n B 1 70 ASN 70 266 266 ASN ASN B . n B 1 71 THR 71 267 267 THR THR B . n B 1 72 VAL 72 268 268 VAL VAL B . n B 1 73 THR 73 269 269 THR THR B . n B 1 74 THR 74 270 270 THR THR B . n B 1 75 GLY 75 271 271 GLY GLY B . n B 1 76 ASN 76 272 272 ASN ASN B . n B 1 77 TYR 77 273 273 TYR TYR B . n B 1 78 LEU 78 274 274 LEU LEU B . n B 1 79 LEU 79 275 275 LEU LEU B . n B 1 80 ARG 80 276 276 ARG ARG B . n B 1 81 VAL 81 277 277 VAL VAL B . n B 1 82 LYS 82 278 278 LYS LYS B . n B 1 83 TYR 83 279 279 TYR TYR B . n B 1 84 GLY 84 280 280 GLY GLY B . n B 1 85 SER 85 281 281 SER SER B . n B 1 86 SER 86 282 282 SER SER B . n B 1 87 ASP 87 283 283 ASP ASP B . n B 1 88 PHE 88 284 284 PHE PHE B . n B 1 89 VAL 89 285 285 VAL VAL B . n B 1 90 VAL 90 286 286 VAL VAL B . n B 1 91 ALA 91 287 287 ALA ALA B . n B 1 92 CYS 92 288 288 CYS CYS B . n B 1 93 PRO 93 289 289 PRO PRO B . n B 1 94 ALA 94 290 290 ALA ALA B . n B 1 95 SER 95 291 291 SER SER B . n B 1 96 SER 96 292 292 SER SER B . n B 1 97 LEU 97 293 293 LEU LEU B . n B 1 98 THR 98 294 294 THR THR B . n B 1 99 ALA 99 295 295 ALA ALA B . n B 1 100 GLY 100 296 296 GLY GLY B . n B 1 101 GLY 101 297 297 GLY GLY B . n B 1 102 THR 102 298 298 THR THR B . n B 1 103 ILE 103 299 299 ILE ILE B . n B 1 104 SER 104 300 300 SER SER B . n B 1 105 LEU 105 301 301 LEU LEU B . n B 1 106 LEU 106 302 302 LEU LEU B . n B 1 107 ILE 107 303 303 ILE ILE B . n B 1 108 TYR 108 304 304 TYR TYR B . n B 1 109 CYS 109 305 305 CYS CYS B . n B 1 110 ASN 110 306 306 ASN ASN B . n B 1 111 VAL 111 307 307 VAL VAL B . n B 1 112 LEU 112 308 308 LEU LEU B . n B 1 113 GLY 113 309 309 GLY GLY B . n B 1 114 VAL 114 310 310 VAL VAL B . n B 1 115 VAL 115 311 311 VAL VAL B . n B 1 116 SER 116 312 312 SER SER B . n B 1 117 LEU 117 313 313 LEU LEU B . n B 1 118 ASP 118 314 314 ASP ASP B . n B 1 119 VAL 119 315 315 VAL VAL B . n B 1 120 LEU 120 316 316 LEU LEU B . n B 1 121 LYS 121 317 317 LYS LYS B . n B 1 122 PHE 122 318 318 PHE PHE B . n B 1 123 SER 123 319 319 SER SER B . n B 1 124 LEU 124 320 320 LEU LEU B . n B 1 125 CYS 125 321 321 CYS CYS B . n B 1 126 ASN 126 322 322 ASN ASN B . n B 1 127 ASP 127 323 323 ASP ASP B . n B 1 128 GLY 128 324 324 GLY GLY B . n B 1 129 ALA 129 325 325 ALA ALA B . n B 1 130 ALA 130 326 326 ALA ALA B . n B 1 131 LEU 131 327 327 LEU LEU B . n B 1 132 SER 132 328 328 SER SER B . n B 1 133 ASN 133 329 329 ASN ASN B . n B 1 134 TYR 134 330 330 TYR TYR B . n B 1 135 ILE 135 331 331 ILE ILE B . n B 1 136 ILE 136 332 332 ILE ILE B . n B 1 137 ASN 137 333 333 ASN ASN B . n B 1 138 ILE 138 334 334 ILE ILE B . n B 1 139 THR 139 335 335 THR THR B . n B 1 140 ALA 140 336 336 ALA ALA B . n B 1 141 ALA 141 337 337 ALA ALA B . n B 1 142 LYS 142 338 338 LYS LYS B . n B 1 143 ILE 143 339 339 ILE ILE B . n B 1 144 ASN 144 340 340 ASN ASN B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 341 2 HOH HOH A . C 2 HOH 2 342 3 HOH HOH A . C 2 HOH 3 343 5 HOH HOH A . C 2 HOH 4 344 8 HOH HOH A . C 2 HOH 5 345 9 HOH HOH A . C 2 HOH 6 346 13 HOH HOH A . C 2 HOH 7 347 14 HOH HOH A . C 2 HOH 8 348 15 HOH HOH A . C 2 HOH 9 349 17 HOH HOH A . C 2 HOH 10 350 19 HOH HOH A . C 2 HOH 11 351 21 HOH HOH A . C 2 HOH 12 352 24 HOH HOH A . C 2 HOH 13 353 25 HOH HOH A . C 2 HOH 14 354 27 HOH HOH A . C 2 HOH 15 355 29 HOH HOH A . C 2 HOH 16 356 31 HOH HOH A . C 2 HOH 17 357 34 HOH HOH A . C 2 HOH 18 358 35 HOH HOH A . C 2 HOH 19 359 38 HOH HOH A . C 2 HOH 20 360 40 HOH HOH A . C 2 HOH 21 361 42 HOH HOH A . C 2 HOH 22 362 43 HOH HOH A . C 2 HOH 23 363 46 HOH HOH A . C 2 HOH 24 364 48 HOH HOH A . C 2 HOH 25 365 49 HOH HOH A . C 2 HOH 26 366 50 HOH HOH A . C 2 HOH 27 367 52 HOH HOH A . C 2 HOH 28 368 54 HOH HOH A . C 2 HOH 29 369 57 HOH HOH A . C 2 HOH 30 370 61 HOH HOH A . C 2 HOH 31 371 63 HOH HOH A . C 2 HOH 32 372 64 HOH HOH A . C 2 HOH 33 373 66 HOH HOH A . C 2 HOH 34 374 68 HOH HOH A . C 2 HOH 35 375 71 HOH HOH A . C 2 HOH 36 376 72 HOH HOH A . C 2 HOH 37 377 76 HOH HOH A . C 2 HOH 38 378 78 HOH HOH A . C 2 HOH 39 379 80 HOH HOH A . C 2 HOH 40 380 82 HOH HOH A . C 2 HOH 41 381 83 HOH HOH A . C 2 HOH 42 382 84 HOH HOH A . C 2 HOH 43 383 85 HOH HOH A . C 2 HOH 44 384 87 HOH HOH A . C 2 HOH 45 385 89 HOH HOH A . C 2 HOH 46 386 91 HOH HOH A . C 2 HOH 47 387 92 HOH HOH A . C 2 HOH 48 388 93 HOH HOH A . C 2 HOH 49 389 96 HOH HOH A . C 2 HOH 50 390 98 HOH HOH A . C 2 HOH 51 391 99 HOH HOH A . C 2 HOH 52 392 106 HOH HOH A . C 2 HOH 53 393 107 HOH HOH A . C 2 HOH 54 394 109 HOH HOH A . C 2 HOH 55 395 110 HOH HOH A . C 2 HOH 56 396 112 HOH HOH A . C 2 HOH 57 397 113 HOH HOH A . C 2 HOH 58 398 116 HOH HOH A . C 2 HOH 59 399 119 HOH HOH A . C 2 HOH 60 400 120 HOH HOH A . C 2 HOH 61 401 121 HOH HOH A . C 2 HOH 62 402 122 HOH HOH A . C 2 HOH 63 403 127 HOH HOH A . C 2 HOH 64 404 128 HOH HOH A . C 2 HOH 65 405 130 HOH HOH A . C 2 HOH 66 406 131 HOH HOH A . C 2 HOH 67 407 133 HOH HOH A . C 2 HOH 68 408 138 HOH HOH A . C 2 HOH 69 409 140 HOH HOH A . C 2 HOH 70 410 141 HOH HOH A . C 2 HOH 71 411 142 HOH HOH A . C 2 HOH 72 412 143 HOH HOH A . C 2 HOH 73 413 146 HOH HOH A . C 2 HOH 74 414 147 HOH HOH A . C 2 HOH 75 415 148 HOH HOH A . C 2 HOH 76 416 149 HOH HOH A . C 2 HOH 77 417 150 HOH HOH A . C 2 HOH 78 418 151 HOH HOH A . C 2 HOH 79 419 157 HOH HOH A . C 2 HOH 80 420 158 HOH HOH A . C 2 HOH 81 421 161 HOH HOH A . C 2 HOH 82 422 162 HOH HOH A . C 2 HOH 83 423 164 HOH HOH A . C 2 HOH 84 424 168 HOH HOH A . C 2 HOH 85 425 171 HOH HOH A . C 2 HOH 86 426 174 HOH HOH A . C 2 HOH 87 427 177 HOH HOH A . C 2 HOH 88 428 178 HOH HOH A . C 2 HOH 89 429 179 HOH HOH A . C 2 HOH 90 430 181 HOH HOH A . C 2 HOH 91 431 182 HOH HOH A . C 2 HOH 92 432 183 HOH HOH A . C 2 HOH 93 433 186 HOH HOH A . C 2 HOH 94 434 187 HOH HOH A . C 2 HOH 95 435 189 HOH HOH A . C 2 HOH 96 436 191 HOH HOH A . C 2 HOH 97 437 192 HOH HOH A . C 2 HOH 98 438 193 HOH HOH A . C 2 HOH 99 439 199 HOH HOH A . C 2 HOH 100 440 202 HOH HOH A . C 2 HOH 101 441 203 HOH HOH A . C 2 HOH 102 442 204 HOH HOH A . C 2 HOH 103 443 207 HOH HOH A . C 2 HOH 104 444 209 HOH HOH A . C 2 HOH 105 445 210 HOH HOH A . C 2 HOH 106 446 212 HOH HOH A . C 2 HOH 107 447 213 HOH HOH A . C 2 HOH 108 448 216 HOH HOH A . C 2 HOH 109 449 217 HOH HOH A . C 2 HOH 110 450 218 HOH HOH A . C 2 HOH 111 451 220 HOH HOH A . C 2 HOH 112 452 221 HOH HOH A . C 2 HOH 113 453 222 HOH HOH A . C 2 HOH 114 454 223 HOH HOH A . C 2 HOH 115 455 225 HOH HOH A . C 2 HOH 116 456 228 HOH HOH A . D 2 HOH 1 341 1 HOH HOH B . D 2 HOH 2 342 4 HOH HOH B . D 2 HOH 3 343 6 HOH HOH B . D 2 HOH 4 344 7 HOH HOH B . D 2 HOH 5 345 10 HOH HOH B . D 2 HOH 6 346 11 HOH HOH B . D 2 HOH 7 347 12 HOH HOH B . D 2 HOH 8 348 16 HOH HOH B . D 2 HOH 9 349 18 HOH HOH B . D 2 HOH 10 350 20 HOH HOH B . D 2 HOH 11 351 22 HOH HOH B . D 2 HOH 12 352 23 HOH HOH B . D 2 HOH 13 353 26 HOH HOH B . D 2 HOH 14 354 28 HOH HOH B . D 2 HOH 15 355 30 HOH HOH B . D 2 HOH 16 356 32 HOH HOH B . D 2 HOH 17 357 33 HOH HOH B . D 2 HOH 18 358 36 HOH HOH B . D 2 HOH 19 359 37 HOH HOH B . D 2 HOH 20 360 39 HOH HOH B . D 2 HOH 21 361 41 HOH HOH B . D 2 HOH 22 362 44 HOH HOH B . D 2 HOH 23 363 45 HOH HOH B . D 2 HOH 24 364 47 HOH HOH B . D 2 HOH 25 365 51 HOH HOH B . D 2 HOH 26 366 53 HOH HOH B . D 2 HOH 27 367 55 HOH HOH B . D 2 HOH 28 368 56 HOH HOH B . D 2 HOH 29 369 58 HOH HOH B . D 2 HOH 30 370 59 HOH HOH B . D 2 HOH 31 371 60 HOH HOH B . D 2 HOH 32 372 62 HOH HOH B . D 2 HOH 33 373 65 HOH HOH B . D 2 HOH 34 374 67 HOH HOH B . D 2 HOH 35 375 69 HOH HOH B . D 2 HOH 36 376 70 HOH HOH B . D 2 HOH 37 377 73 HOH HOH B . D 2 HOH 38 378 74 HOH HOH B . D 2 HOH 39 379 75 HOH HOH B . D 2 HOH 40 380 77 HOH HOH B . D 2 HOH 41 381 79 HOH HOH B . D 2 HOH 42 382 81 HOH HOH B . D 2 HOH 43 383 86 HOH HOH B . D 2 HOH 44 384 88 HOH HOH B . D 2 HOH 45 385 90 HOH HOH B . D 2 HOH 46 386 94 HOH HOH B . D 2 HOH 47 387 95 HOH HOH B . D 2 HOH 48 388 97 HOH HOH B . D 2 HOH 49 389 100 HOH HOH B . D 2 HOH 50 390 101 HOH HOH B . D 2 HOH 51 391 102 HOH HOH B . D 2 HOH 52 392 103 HOH HOH B . D 2 HOH 53 393 104 HOH HOH B . D 2 HOH 54 394 105 HOH HOH B . D 2 HOH 55 395 108 HOH HOH B . D 2 HOH 56 396 111 HOH HOH B . D 2 HOH 57 397 114 HOH HOH B . D 2 HOH 58 398 115 HOH HOH B . D 2 HOH 59 399 117 HOH HOH B . D 2 HOH 60 400 118 HOH HOH B . D 2 HOH 61 401 123 HOH HOH B . D 2 HOH 62 402 124 HOH HOH B . D 2 HOH 63 403 125 HOH HOH B . D 2 HOH 64 404 126 HOH HOH B . D 2 HOH 65 405 129 HOH HOH B . D 2 HOH 66 406 132 HOH HOH B . D 2 HOH 67 407 134 HOH HOH B . D 2 HOH 68 408 135 HOH HOH B . D 2 HOH 69 409 136 HOH HOH B . D 2 HOH 70 410 137 HOH HOH B . D 2 HOH 71 411 139 HOH HOH B . D 2 HOH 72 412 144 HOH HOH B . D 2 HOH 73 413 145 HOH HOH B . D 2 HOH 74 414 152 HOH HOH B . D 2 HOH 75 415 153 HOH HOH B . D 2 HOH 76 416 154 HOH HOH B . D 2 HOH 77 417 155 HOH HOH B . D 2 HOH 78 418 156 HOH HOH B . D 2 HOH 79 419 159 HOH HOH B . D 2 HOH 80 420 160 HOH HOH B . D 2 HOH 81 421 163 HOH HOH B . D 2 HOH 82 422 165 HOH HOH B . D 2 HOH 83 423 166 HOH HOH B . D 2 HOH 84 424 167 HOH HOH B . D 2 HOH 85 425 169 HOH HOH B . D 2 HOH 86 426 170 HOH HOH B . D 2 HOH 87 427 172 HOH HOH B . D 2 HOH 88 428 173 HOH HOH B . D 2 HOH 89 429 175 HOH HOH B . D 2 HOH 90 430 176 HOH HOH B . D 2 HOH 91 431 180 HOH HOH B . D 2 HOH 92 432 184 HOH HOH B . D 2 HOH 93 433 185 HOH HOH B . D 2 HOH 94 434 188 HOH HOH B . D 2 HOH 95 435 190 HOH HOH B . D 2 HOH 96 436 194 HOH HOH B . D 2 HOH 97 437 195 HOH HOH B . D 2 HOH 98 438 196 HOH HOH B . D 2 HOH 99 439 197 HOH HOH B . D 2 HOH 100 440 198 HOH HOH B . D 2 HOH 101 441 200 HOH HOH B . D 2 HOH 102 442 201 HOH HOH B . D 2 HOH 103 443 205 HOH HOH B . D 2 HOH 104 444 206 HOH HOH B . D 2 HOH 105 445 208 HOH HOH B . D 2 HOH 106 446 211 HOH HOH B . D 2 HOH 107 447 214 HOH HOH B . D 2 HOH 108 448 215 HOH HOH B . D 2 HOH 109 449 219 HOH HOH B . D 2 HOH 110 450 224 HOH HOH B . D 2 HOH 111 451 226 HOH HOH B . D 2 HOH 112 452 227 HOH HOH B . D 2 HOH 113 453 229 HOH HOH B . D 2 HOH 114 454 230 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SCALEPACK 'data scaling' . ? 2 SOLVE phasing . ? 3 CNS refinement . ? 4 HKL-2000 'data reduction' . ? 5 # _cell.entry_id 1YQ5 _cell.length_a 114.370 _cell.length_b 114.370 _cell.length_c 114.370 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YQ5 _symmetry.space_group_name_H-M 'P 21 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1YQ5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.97 _exptl_crystal.density_percent_sol 58.7 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details 'Na-formate, Na-acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 200.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-10-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.978335 1.0 2 0.978497 1.0 3 0.885595 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.978335, 0.978497, 0.885595' # _reflns.entry_id 1YQ5 _reflns.observed_criterion_sigma_F -3.0 _reflns.observed_criterion_sigma_I -3.0 _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 20.0 _reflns.number_all 33901 _reflns.number_obs 33901 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1YQ5 _refine.ls_d_res_high 2.0 _refine.ls_d_res_low 19.91 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 33503 _refine.ls_number_reflns_obs 33503 _refine.ls_number_reflns_R_free 3338 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.217 _refine.ls_R_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.239 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2030 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 230 _refine_hist.number_atoms_total 2260 _refine_hist.d_res_high 2.0 _refine_hist.d_res_low 19.91 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1YQ5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YQ5 _struct.title 'PRD1 vertex protein P5' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YQ5 _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'beta-spiral, beta-jelly-roll, Viral protein' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code COA5_BPPRD _struct_ref.pdbx_db_accession P22536 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GGVTDALSLMYSTSTGGPASIAANALTDFDLSGALTVNSVGTGLTKSAAGIQLAAGKSGLYQITMTVKNNTVTTGNYLLR VKYGSSDFVVACPASSLTAGGTISLLIYCNVLGVPSLDVLKFSLCNDGAALSNYIINITAAKIN ; _struct_ref.pdbx_align_begin 196 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1YQ5 A 1 ? 144 ? P22536 196 ? 339 ? 197 340 2 1 1YQ5 B 1 ? 144 ? P22536 196 ? 339 ? 197 340 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YQ5 MSE A 10 ? UNP P22536 MET 205 'modified residue' 206 1 1 1YQ5 MSE A 65 ? UNP P22536 MET 260 'modified residue' 261 2 1 1YQ5 VAL A 115 ? UNP P22536 PRO 310 'SEE REMARK 999' 311 3 2 1YQ5 MSE B 10 ? UNP P22536 MET 205 'modified residue' 206 4 2 1YQ5 MSE B 65 ? UNP P22536 MET 260 'modified residue' 261 5 2 1YQ5 VAL B 115 ? UNP P22536 PRO 310 'SEE REMARK 999' 311 6 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA,PQS trimeric 3 2 author_and_software_defined_assembly PISA,PQS trimeric 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5630 ? 1 MORE -44 ? 1 'SSA (A^2)' 14380 ? 2 'ABSA (A^2)' 5580 ? 2 MORE -45 ? 2 'SSA (A^2)' 14410 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3 A,C 2 1,4,5 B,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 4 'crystal symmetry operation' 7_555 -z+1/2,-x,y+1/2 0.0000000000 0.0000000000 -1.0000000000 57.1850000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 57.1850000000 5 'crystal symmetry operation' 10_545 -y,z-1/2,-x+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -57.1850000000 -1.0000000000 0.0000000000 0.0000000000 57.1850000000 # loop_ _struct_biol.id _struct_biol.details _struct_biol.pdbx_parent_biol_id 1 ;The biological assembly is a trimer generated from the chain A in the asymmetric unit by the operations: z,x,y and y,z,x. ; ? 2 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 9 C ? ? ? 1_555 A MSE 10 N ? ? A LEU 205 A MSE 206 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A MSE 10 C ? ? ? 1_555 A TYR 11 N ? ? A MSE 206 A TYR 207 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? A THR 64 C ? ? ? 1_555 A MSE 65 N ? ? A THR 260 A MSE 261 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale4 covale both ? A MSE 65 C ? ? ? 1_555 A THR 66 N ? ? A MSE 261 A THR 262 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? B LEU 9 C ? ? ? 1_555 B MSE 10 N ? ? B LEU 205 B MSE 206 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? B MSE 10 C ? ? ? 1_555 B TYR 11 N ? ? B MSE 206 B TYR 207 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale both ? B THR 64 C ? ? ? 1_555 B MSE 65 N ? ? B THR 260 B MSE 261 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale8 covale both ? B MSE 65 C ? ? ? 1_555 B THR 66 N ? ? B MSE 261 B THR 262 1_555 ? ? ? ? ? ? ? 1.327 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 10 ? . . . . MSE A 206 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 65 ? . . . . MSE A 261 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE B 10 ? . . . . MSE B 206 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE B 65 ? . . . . MSE B 261 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? C ? 5 ? D ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 35 ? VAL A 40 ? LEU A 231 VAL A 236 A 2 ASP A 5 ? TYR A 11 ? ASP A 201 TYR A 207 A 3 ILE A 135 ? LYS A 142 ? ILE A 331 LYS A 338 A 4 GLY A 59 ? LYS A 68 ? GLY A 255 LYS A 264 A 5 GLY A 100 ? CYS A 109 ? GLY A 296 CYS A 305 B 1 LEU A 44 ? LYS A 46 ? LEU A 240 LYS A 242 B 2 ILE A 51 ? LEU A 53 ? ILE A 247 LEU A 249 B 3 VAL A 119 ? ASN A 126 ? VAL A 315 ASN A 322 B 4 ASN A 76 ? TYR A 83 ? ASN A 272 TYR A 279 B 5 SER A 86 ? PRO A 93 ? SER A 282 PRO A 289 C 1 LEU B 35 ? VAL B 40 ? LEU B 231 VAL B 236 C 2 ASP B 5 ? TYR B 11 ? ASP B 201 TYR B 207 C 3 ILE B 135 ? LYS B 142 ? ILE B 331 LYS B 338 C 4 GLY B 59 ? LYS B 68 ? GLY B 255 LYS B 264 C 5 GLY B 100 ? CYS B 109 ? GLY B 296 CYS B 305 D 1 LEU B 44 ? LYS B 46 ? LEU B 240 LYS B 242 D 2 ILE B 51 ? LEU B 53 ? ILE B 247 LEU B 249 D 3 VAL B 119 ? ASN B 126 ? VAL B 315 ASN B 322 D 4 ASN B 76 ? TYR B 83 ? ASN B 272 TYR B 279 D 5 SER B 86 ? PRO B 93 ? SER B 282 PRO B 289 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASN A 38 ? O ASN A 234 N SER A 8 ? N SER A 204 A 2 3 N TYR A 11 ? N TYR A 207 O ILE A 136 ? O ILE A 332 A 3 4 O ALA A 141 ? O ALA A 337 N GLN A 62 ? N GLN A 258 A 4 5 N ILE A 63 ? N ILE A 259 O LEU A 105 ? O LEU A 301 B 1 2 N THR A 45 ? N THR A 241 O GLN A 52 ? O GLN A 248 B 2 3 N ILE A 51 ? N ILE A 247 O LEU A 120 ? O LEU A 316 B 3 4 O SER A 123 ? O SER A 319 N ARG A 80 ? N ARG A 276 B 4 5 N TYR A 77 ? N TYR A 273 O CYS A 92 ? O CYS A 288 C 1 2 O ASN B 38 ? O ASN B 234 N SER B 8 ? N SER B 204 C 2 3 N TYR B 11 ? N TYR B 207 O ILE B 136 ? O ILE B 332 C 3 4 O ALA B 141 ? O ALA B 337 N GLN B 62 ? N GLN B 258 C 4 5 N ILE B 63 ? N ILE B 259 O LEU B 105 ? O LEU B 301 D 1 2 N THR B 45 ? N THR B 241 O GLN B 52 ? O GLN B 248 D 2 3 N ILE B 51 ? N ILE B 247 O LEU B 120 ? O LEU B 316 D 3 4 O SER B 123 ? O SER B 319 N ARG B 80 ? N ARG B 276 D 4 5 N VAL B 81 ? N VAL B 277 O PHE B 88 ? O PHE B 284 # _pdbx_entry_details.entry_id 1YQ5 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 253 ? ? -99.66 31.60 2 1 ASN A 329 ? ? -149.01 53.57 3 1 ASN B 329 ? ? -148.94 53.46 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 10 A MSE 206 ? MET SELENOMETHIONINE 2 A MSE 65 A MSE 261 ? MET SELENOMETHIONINE 3 B MSE 10 B MSE 206 ? MET SELENOMETHIONINE 4 B MSE 65 B MSE 261 ? MET SELENOMETHIONINE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLY N N N N 108 GLY CA C N N 109 GLY C C N N 110 GLY O O N N 111 GLY OXT O N N 112 GLY H H N N 113 GLY H2 H N N 114 GLY HA2 H N N 115 GLY HA3 H N N 116 GLY HXT H N N 117 HOH O O N N 118 HOH H1 H N N 119 HOH H2 H N N 120 ILE N N N N 121 ILE CA C N S 122 ILE C C N N 123 ILE O O N N 124 ILE CB C N S 125 ILE CG1 C N N 126 ILE CG2 C N N 127 ILE CD1 C N N 128 ILE OXT O N N 129 ILE H H N N 130 ILE H2 H N N 131 ILE HA H N N 132 ILE HB H N N 133 ILE HG12 H N N 134 ILE HG13 H N N 135 ILE HG21 H N N 136 ILE HG22 H N N 137 ILE HG23 H N N 138 ILE HD11 H N N 139 ILE HD12 H N N 140 ILE HD13 H N N 141 ILE HXT H N N 142 LEU N N N N 143 LEU CA C N S 144 LEU C C N N 145 LEU O O N N 146 LEU CB C N N 147 LEU CG C N N 148 LEU CD1 C N N 149 LEU CD2 C N N 150 LEU OXT O N N 151 LEU H H N N 152 LEU H2 H N N 153 LEU HA H N N 154 LEU HB2 H N N 155 LEU HB3 H N N 156 LEU HG H N N 157 LEU HD11 H N N 158 LEU HD12 H N N 159 LEU HD13 H N N 160 LEU HD21 H N N 161 LEU HD22 H N N 162 LEU HD23 H N N 163 LEU HXT H N N 164 LYS N N N N 165 LYS CA C N S 166 LYS C C N N 167 LYS O O N N 168 LYS CB C N N 169 LYS CG C N N 170 LYS CD C N N 171 LYS CE C N N 172 LYS NZ N N N 173 LYS OXT O N N 174 LYS H H N N 175 LYS H2 H N N 176 LYS HA H N N 177 LYS HB2 H N N 178 LYS HB3 H N N 179 LYS HG2 H N N 180 LYS HG3 H N N 181 LYS HD2 H N N 182 LYS HD3 H N N 183 LYS HE2 H N N 184 LYS HE3 H N N 185 LYS HZ1 H N N 186 LYS HZ2 H N N 187 LYS HZ3 H N N 188 LYS HXT H N N 189 MET N N N N 190 MET CA C N S 191 MET C C N N 192 MET O O N N 193 MET CB C N N 194 MET CG C N N 195 MET SD S N N 196 MET CE C N N 197 MET OXT O N N 198 MET H H N N 199 MET H2 H N N 200 MET HA H N N 201 MET HB2 H N N 202 MET HB3 H N N 203 MET HG2 H N N 204 MET HG3 H N N 205 MET HE1 H N N 206 MET HE2 H N N 207 MET HE3 H N N 208 MET HXT H N N 209 MSE N N N N 210 MSE CA C N S 211 MSE C C N N 212 MSE O O N N 213 MSE OXT O N N 214 MSE CB C N N 215 MSE CG C N N 216 MSE SE SE N N 217 MSE CE C N N 218 MSE H H N N 219 MSE H2 H N N 220 MSE HA H N N 221 MSE HXT H N N 222 MSE HB2 H N N 223 MSE HB3 H N N 224 MSE HG2 H N N 225 MSE HG3 H N N 226 MSE HE1 H N N 227 MSE HE2 H N N 228 MSE HE3 H N N 229 PHE N N N N 230 PHE CA C N S 231 PHE C C N N 232 PHE O O N N 233 PHE CB C N N 234 PHE CG C Y N 235 PHE CD1 C Y N 236 PHE CD2 C Y N 237 PHE CE1 C Y N 238 PHE CE2 C Y N 239 PHE CZ C Y N 240 PHE OXT O N N 241 PHE H H N N 242 PHE H2 H N N 243 PHE HA H N N 244 PHE HB2 H N N 245 PHE HB3 H N N 246 PHE HD1 H N N 247 PHE HD2 H N N 248 PHE HE1 H N N 249 PHE HE2 H N N 250 PHE HZ H N N 251 PHE HXT H N N 252 PRO N N N N 253 PRO CA C N S 254 PRO C C N N 255 PRO O O N N 256 PRO CB C N N 257 PRO CG C N N 258 PRO CD C N N 259 PRO OXT O N N 260 PRO H H N N 261 PRO HA H N N 262 PRO HB2 H N N 263 PRO HB3 H N N 264 PRO HG2 H N N 265 PRO HG3 H N N 266 PRO HD2 H N N 267 PRO HD3 H N N 268 PRO HXT H N N 269 SER N N N N 270 SER CA C N S 271 SER C C N N 272 SER O O N N 273 SER CB C N N 274 SER OG O N N 275 SER OXT O N N 276 SER H H N N 277 SER H2 H N N 278 SER HA H N N 279 SER HB2 H N N 280 SER HB3 H N N 281 SER HG H N N 282 SER HXT H N N 283 THR N N N N 284 THR CA C N S 285 THR C C N N 286 THR O O N N 287 THR CB C N R 288 THR OG1 O N N 289 THR CG2 C N N 290 THR OXT O N N 291 THR H H N N 292 THR H2 H N N 293 THR HA H N N 294 THR HB H N N 295 THR HG1 H N N 296 THR HG21 H N N 297 THR HG22 H N N 298 THR HG23 H N N 299 THR HXT H N N 300 TYR N N N N 301 TYR CA C N S 302 TYR C C N N 303 TYR O O N N 304 TYR CB C N N 305 TYR CG C Y N 306 TYR CD1 C Y N 307 TYR CD2 C Y N 308 TYR CE1 C Y N 309 TYR CE2 C Y N 310 TYR CZ C Y N 311 TYR OH O N N 312 TYR OXT O N N 313 TYR H H N N 314 TYR H2 H N N 315 TYR HA H N N 316 TYR HB2 H N N 317 TYR HB3 H N N 318 TYR HD1 H N N 319 TYR HD2 H N N 320 TYR HE1 H N N 321 TYR HE2 H N N 322 TYR HH H N N 323 TYR HXT H N N 324 VAL N N N N 325 VAL CA C N S 326 VAL C C N N 327 VAL O O N N 328 VAL CB C N N 329 VAL CG1 C N N 330 VAL CG2 C N N 331 VAL OXT O N N 332 VAL H H N N 333 VAL H2 H N N 334 VAL HA H N N 335 VAL HB H N N 336 VAL HG11 H N N 337 VAL HG12 H N N 338 VAL HG13 H N N 339 VAL HG21 H N N 340 VAL HG22 H N N 341 VAL HG23 H N N 342 VAL HXT H N N 343 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLY N CA sing N N 102 GLY N H sing N N 103 GLY N H2 sing N N 104 GLY CA C sing N N 105 GLY CA HA2 sing N N 106 GLY CA HA3 sing N N 107 GLY C O doub N N 108 GLY C OXT sing N N 109 GLY OXT HXT sing N N 110 HOH O H1 sing N N 111 HOH O H2 sing N N 112 ILE N CA sing N N 113 ILE N H sing N N 114 ILE N H2 sing N N 115 ILE CA C sing N N 116 ILE CA CB sing N N 117 ILE CA HA sing N N 118 ILE C O doub N N 119 ILE C OXT sing N N 120 ILE CB CG1 sing N N 121 ILE CB CG2 sing N N 122 ILE CB HB sing N N 123 ILE CG1 CD1 sing N N 124 ILE CG1 HG12 sing N N 125 ILE CG1 HG13 sing N N 126 ILE CG2 HG21 sing N N 127 ILE CG2 HG22 sing N N 128 ILE CG2 HG23 sing N N 129 ILE CD1 HD11 sing N N 130 ILE CD1 HD12 sing N N 131 ILE CD1 HD13 sing N N 132 ILE OXT HXT sing N N 133 LEU N CA sing N N 134 LEU N H sing N N 135 LEU N H2 sing N N 136 LEU CA C sing N N 137 LEU CA CB sing N N 138 LEU CA HA sing N N 139 LEU C O doub N N 140 LEU C OXT sing N N 141 LEU CB CG sing N N 142 LEU CB HB2 sing N N 143 LEU CB HB3 sing N N 144 LEU CG CD1 sing N N 145 LEU CG CD2 sing N N 146 LEU CG HG sing N N 147 LEU CD1 HD11 sing N N 148 LEU CD1 HD12 sing N N 149 LEU CD1 HD13 sing N N 150 LEU CD2 HD21 sing N N 151 LEU CD2 HD22 sing N N 152 LEU CD2 HD23 sing N N 153 LEU OXT HXT sing N N 154 LYS N CA sing N N 155 LYS N H sing N N 156 LYS N H2 sing N N 157 LYS CA C sing N N 158 LYS CA CB sing N N 159 LYS CA HA sing N N 160 LYS C O doub N N 161 LYS C OXT sing N N 162 LYS CB CG sing N N 163 LYS CB HB2 sing N N 164 LYS CB HB3 sing N N 165 LYS CG CD sing N N 166 LYS CG HG2 sing N N 167 LYS CG HG3 sing N N 168 LYS CD CE sing N N 169 LYS CD HD2 sing N N 170 LYS CD HD3 sing N N 171 LYS CE NZ sing N N 172 LYS CE HE2 sing N N 173 LYS CE HE3 sing N N 174 LYS NZ HZ1 sing N N 175 LYS NZ HZ2 sing N N 176 LYS NZ HZ3 sing N N 177 LYS OXT HXT sing N N 178 MET N CA sing N N 179 MET N H sing N N 180 MET N H2 sing N N 181 MET CA C sing N N 182 MET CA CB sing N N 183 MET CA HA sing N N 184 MET C O doub N N 185 MET C OXT sing N N 186 MET CB CG sing N N 187 MET CB HB2 sing N N 188 MET CB HB3 sing N N 189 MET CG SD sing N N 190 MET CG HG2 sing N N 191 MET CG HG3 sing N N 192 MET SD CE sing N N 193 MET CE HE1 sing N N 194 MET CE HE2 sing N N 195 MET CE HE3 sing N N 196 MET OXT HXT sing N N 197 MSE N CA sing N N 198 MSE N H sing N N 199 MSE N H2 sing N N 200 MSE CA C sing N N 201 MSE CA CB sing N N 202 MSE CA HA sing N N 203 MSE C O doub N N 204 MSE C OXT sing N N 205 MSE OXT HXT sing N N 206 MSE CB CG sing N N 207 MSE CB HB2 sing N N 208 MSE CB HB3 sing N N 209 MSE CG SE sing N N 210 MSE CG HG2 sing N N 211 MSE CG HG3 sing N N 212 MSE SE CE sing N N 213 MSE CE HE1 sing N N 214 MSE CE HE2 sing N N 215 MSE CE HE3 sing N N 216 PHE N CA sing N N 217 PHE N H sing N N 218 PHE N H2 sing N N 219 PHE CA C sing N N 220 PHE CA CB sing N N 221 PHE CA HA sing N N 222 PHE C O doub N N 223 PHE C OXT sing N N 224 PHE CB CG sing N N 225 PHE CB HB2 sing N N 226 PHE CB HB3 sing N N 227 PHE CG CD1 doub Y N 228 PHE CG CD2 sing Y N 229 PHE CD1 CE1 sing Y N 230 PHE CD1 HD1 sing N N 231 PHE CD2 CE2 doub Y N 232 PHE CD2 HD2 sing N N 233 PHE CE1 CZ doub Y N 234 PHE CE1 HE1 sing N N 235 PHE CE2 CZ sing Y N 236 PHE CE2 HE2 sing N N 237 PHE CZ HZ sing N N 238 PHE OXT HXT sing N N 239 PRO N CA sing N N 240 PRO N CD sing N N 241 PRO N H sing N N 242 PRO CA C sing N N 243 PRO CA CB sing N N 244 PRO CA HA sing N N 245 PRO C O doub N N 246 PRO C OXT sing N N 247 PRO CB CG sing N N 248 PRO CB HB2 sing N N 249 PRO CB HB3 sing N N 250 PRO CG CD sing N N 251 PRO CG HG2 sing N N 252 PRO CG HG3 sing N N 253 PRO CD HD2 sing N N 254 PRO CD HD3 sing N N 255 PRO OXT HXT sing N N 256 SER N CA sing N N 257 SER N H sing N N 258 SER N H2 sing N N 259 SER CA C sing N N 260 SER CA CB sing N N 261 SER CA HA sing N N 262 SER C O doub N N 263 SER C OXT sing N N 264 SER CB OG sing N N 265 SER CB HB2 sing N N 266 SER CB HB3 sing N N 267 SER OG HG sing N N 268 SER OXT HXT sing N N 269 THR N CA sing N N 270 THR N H sing N N 271 THR N H2 sing N N 272 THR CA C sing N N 273 THR CA CB sing N N 274 THR CA HA sing N N 275 THR C O doub N N 276 THR C OXT sing N N 277 THR CB OG1 sing N N 278 THR CB CG2 sing N N 279 THR CB HB sing N N 280 THR OG1 HG1 sing N N 281 THR CG2 HG21 sing N N 282 THR CG2 HG22 sing N N 283 THR CG2 HG23 sing N N 284 THR OXT HXT sing N N 285 TYR N CA sing N N 286 TYR N H sing N N 287 TYR N H2 sing N N 288 TYR CA C sing N N 289 TYR CA CB sing N N 290 TYR CA HA sing N N 291 TYR C O doub N N 292 TYR C OXT sing N N 293 TYR CB CG sing N N 294 TYR CB HB2 sing N N 295 TYR CB HB3 sing N N 296 TYR CG CD1 doub Y N 297 TYR CG CD2 sing Y N 298 TYR CD1 CE1 sing Y N 299 TYR CD1 HD1 sing N N 300 TYR CD2 CE2 doub Y N 301 TYR CD2 HD2 sing N N 302 TYR CE1 CZ doub Y N 303 TYR CE1 HE1 sing N N 304 TYR CE2 CZ sing Y N 305 TYR CE2 HE2 sing N N 306 TYR CZ OH sing N N 307 TYR OH HH sing N N 308 TYR OXT HXT sing N N 309 VAL N CA sing N N 310 VAL N H sing N N 311 VAL N H2 sing N N 312 VAL CA C sing N N 313 VAL CA CB sing N N 314 VAL CA HA sing N N 315 VAL C O doub N N 316 VAL C OXT sing N N 317 VAL CB CG1 sing N N 318 VAL CB CG2 sing N N 319 VAL CB HB sing N N 320 VAL CG1 HG11 sing N N 321 VAL CG1 HG12 sing N N 322 VAL CG1 HG13 sing N N 323 VAL CG2 HG21 sing N N 324 VAL CG2 HG22 sing N N 325 VAL CG2 HG23 sing N N 326 VAL OXT HXT sing N N 327 # _atom_sites.entry_id 1YQ5 _atom_sites.fract_transf_matrix[1][1] 0.008744 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008744 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008744 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_