data_1YR9 # _entry.id 1YR9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YR9 pdb_00001yr9 10.2210/pdb1yr9/pdb RCSB RCSB031839 ? ? WWPDB D_1000031839 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1YR6 'the same protein in Apo form' unspecified PDB 1YR7 'the same protein in GTP-gamma-S bound form' unspecified PDB 1YR8 'the same protein in GTP bound form' unspecified PDB 1YRA 'the same protein in GDP bound form' unspecified PDB 1YRB 'the same protein in GDP and Mg bound form' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YR9 _pdbx_database_status.recvd_initial_deposition_date 2005-02-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gras, S.' 1 'Carpentier, P.' 2 'Armengaud, J.' 3 'Housset, D.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structural insights into a new homodimeric self-activated GTPase family.' 'Embo Rep.' 8 569 575 2007 ? UK 1469-221X ? ? 17468740 10.1038/sj.embor.7400958 1 ;Expression, purification, crystallization and preliminary crystallographic analysis of the PAB0955 gene product ; 'Acta Crystallogr.,Sect.F' 61 208 211 2005 ? DK 1744-3091 ? ? ? 10.1107/S1744309105000035 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gras, S.' 1 ? primary 'Chaumont, V.' 2 ? primary 'Fernandez, B.' 3 ? primary 'Carpentier, P.' 4 ? primary 'Charrier-Savournin, F.' 5 ? primary 'Schmitt, S.' 6 ? primary 'Pineau, C.' 7 ? primary 'Flament, D.' 8 ? primary 'Hecker, A.' 9 ? primary 'Forterre, P.' 10 ? primary 'Armengaud, J.' 11 ? primary 'Housset, D.' 12 ? 1 'Gras, S.' 13 ? 1 'Fernandez, B.' 14 ? 1 'Chaumont, V.' 15 ? 1 'Carpentier, P.' 16 ? 1 'Armengaud, J.' 17 ? 1 'Housset, D.' 18 ? # _cell.entry_id 1YR9 _cell.length_a 58.820 _cell.length_b 84.051 _cell.length_c 53.167 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1YR9 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ATP(GTP)binding protein' 30334.795 1 ? ? 'residues 1-248' ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 3 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 4 water nat water 18.015 24 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PAB0955 gene product' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MRGSHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGP NGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVR FFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKT REGFEDLETLAYEHYCTCGDLT ; _entity_poly.pdbx_seq_one_letter_code_can ;MRGSHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGP NGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVR FFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKT REGFEDLETLAYEHYCTCGDLT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 GLY n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 GLY n 1 12 MET n 1 13 ALA n 1 14 SER n 1 15 MET n 1 16 ILE n 1 17 VAL n 1 18 VAL n 1 19 PHE n 1 20 VAL n 1 21 GLY n 1 22 THR n 1 23 ALA n 1 24 GLY n 1 25 SER n 1 26 GLY n 1 27 LYS n 1 28 THR n 1 29 THR n 1 30 LEU n 1 31 THR n 1 32 GLY n 1 33 GLU n 1 34 PHE n 1 35 GLY n 1 36 ARG n 1 37 TYR n 1 38 LEU n 1 39 GLU n 1 40 ASP n 1 41 ASN n 1 42 TYR n 1 43 LYS n 1 44 VAL n 1 45 ALA n 1 46 TYR n 1 47 VAL n 1 48 ASN n 1 49 LEU n 1 50 ASP n 1 51 THR n 1 52 GLY n 1 53 VAL n 1 54 LYS n 1 55 GLU n 1 56 LEU n 1 57 PRO n 1 58 TYR n 1 59 GLU n 1 60 PRO n 1 61 SER n 1 62 ILE n 1 63 ASP n 1 64 VAL n 1 65 ARG n 1 66 GLU n 1 67 PHE n 1 68 VAL n 1 69 THR n 1 70 VAL n 1 71 GLU n 1 72 GLU n 1 73 ILE n 1 74 MET n 1 75 ARG n 1 76 GLU n 1 77 GLY n 1 78 TYR n 1 79 GLY n 1 80 PRO n 1 81 ASN n 1 82 GLY n 1 83 ALA n 1 84 ILE n 1 85 VAL n 1 86 GLU n 1 87 SER n 1 88 TYR n 1 89 ASP n 1 90 ARG n 1 91 LEU n 1 92 MET n 1 93 GLU n 1 94 LYS n 1 95 PHE n 1 96 ASN n 1 97 GLU n 1 98 TYR n 1 99 LEU n 1 100 ASN n 1 101 LYS n 1 102 ILE n 1 103 LEU n 1 104 ARG n 1 105 LEU n 1 106 GLU n 1 107 LYS n 1 108 GLU n 1 109 ASN n 1 110 ASP n 1 111 TYR n 1 112 VAL n 1 113 LEU n 1 114 ILE n 1 115 ASP n 1 116 THR n 1 117 PRO n 1 118 GLY n 1 119 GLN n 1 120 MET n 1 121 GLU n 1 122 THR n 1 123 PHE n 1 124 LEU n 1 125 PHE n 1 126 HIS n 1 127 GLU n 1 128 PHE n 1 129 GLY n 1 130 VAL n 1 131 ARG n 1 132 LEU n 1 133 MET n 1 134 GLU n 1 135 ASN n 1 136 LEU n 1 137 PRO n 1 138 TYR n 1 139 PRO n 1 140 LEU n 1 141 VAL n 1 142 VAL n 1 143 TYR n 1 144 ILE n 1 145 SER n 1 146 ASP n 1 147 PRO n 1 148 GLU n 1 149 ILE n 1 150 LEU n 1 151 LYS n 1 152 LYS n 1 153 PRO n 1 154 ASN n 1 155 ASP n 1 156 TYR n 1 157 CYS n 1 158 PHE n 1 159 VAL n 1 160 ARG n 1 161 PHE n 1 162 PHE n 1 163 ALA n 1 164 LEU n 1 165 LEU n 1 166 ILE n 1 167 ASP n 1 168 LEU n 1 169 ARG n 1 170 LEU n 1 171 GLY n 1 172 ALA n 1 173 THR n 1 174 THR n 1 175 ILE n 1 176 PRO n 1 177 ALA n 1 178 LEU n 1 179 ASN n 1 180 LYS n 1 181 VAL n 1 182 ASP n 1 183 LEU n 1 184 LEU n 1 185 SER n 1 186 GLU n 1 187 GLU n 1 188 GLU n 1 189 LYS n 1 190 GLU n 1 191 ARG n 1 192 HIS n 1 193 ARG n 1 194 LYS n 1 195 TYR n 1 196 PHE n 1 197 GLU n 1 198 ASP n 1 199 ILE n 1 200 ASP n 1 201 TYR n 1 202 LEU n 1 203 THR n 1 204 ALA n 1 205 ARG n 1 206 LEU n 1 207 LYS n 1 208 LEU n 1 209 ASP n 1 210 PRO n 1 211 SER n 1 212 MET n 1 213 GLN n 1 214 GLY n 1 215 LEU n 1 216 MET n 1 217 ALA n 1 218 TYR n 1 219 LYS n 1 220 MET n 1 221 CYS n 1 222 SER n 1 223 MET n 1 224 MET n 1 225 THR n 1 226 GLU n 1 227 VAL n 1 228 LEU n 1 229 PRO n 1 230 PRO n 1 231 VAL n 1 232 ARG n 1 233 VAL n 1 234 LEU n 1 235 TYR n 1 236 LEU n 1 237 SER n 1 238 ALA n 1 239 LYS n 1 240 THR n 1 241 ARG n 1 242 GLU n 1 243 GLY n 1 244 PHE n 1 245 GLU n 1 246 ASP n 1 247 LEU n 1 248 GLU n 1 249 THR n 1 250 LEU n 1 251 ALA n 1 252 TYR n 1 253 GLU n 1 254 HIS n 1 255 TYR n 1 256 CYS n 1 257 THR n 1 258 CYS n 1 259 GLY n 1 260 ASP n 1 261 LEU n 1 262 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pyrococcus _entity_src_gen.pdbx_gene_src_gene PAB0955 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus abyssi' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 29292 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta(DE3)pLys' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pCRT7/NT-topo _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code CAB50343 _struct_ref.pdbx_db_accession 5458856 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEK FNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATT IPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH YCTCGDLT ; _struct_ref.pdbx_align_begin 30 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YR9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 15 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 262 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5458856 _struct_ref_seq.db_align_beg 30 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 277 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 248 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YR9 MET A 1 ? GB 5458856 ? ? 'expression tag' 487 1 1 1YR9 ARG A 2 ? GB 5458856 ? ? 'expression tag' 488 2 1 1YR9 GLY A 3 ? GB 5458856 ? ? 'expression tag' 489 3 1 1YR9 SER A 4 ? GB 5458856 ? ? 'expression tag' 490 4 1 1YR9 HIS A 5 ? GB 5458856 ? ? 'expression tag' 491 5 1 1YR9 HIS A 6 ? GB 5458856 ? ? 'expression tag' 492 6 1 1YR9 HIS A 7 ? GB 5458856 ? ? 'expression tag' 493 7 1 1YR9 HIS A 8 ? GB 5458856 ? ? 'expression tag' 494 8 1 1YR9 HIS A 9 ? GB 5458856 ? ? 'expression tag' 495 9 1 1YR9 HIS A 10 ? GB 5458856 ? ? 'expression tag' 496 10 1 1YR9 GLY A 11 ? GB 5458856 ? ? 'expression tag' 497 11 1 1YR9 MET A 12 ? GB 5458856 ? ? 'expression tag' 498 12 1 1YR9 ALA A 13 ? GB 5458856 ? ? 'expression tag' 499 13 1 1YR9 SER A 14 ? GB 5458856 ? ? 'expression tag' 500 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1YR9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_percent_sol 43.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5 _exptl_crystal_grow.pdbx_details ;8% PEG6000, 1M Lithium chloride, 50mM NaCl, 10% glycerol, 0.1M Citric Acid , 1mM GTP, 20mM DTT, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2004-06-18 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM30A' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM30A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979 # _reflns.entry_id 1YR9 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.80 _reflns.d_resolution_low 100 _reflns.number_all 6880 _reflns.number_obs 6729 _reflns.percent_possible_obs 97.8 _reflns.pdbx_Rmerge_I_obs 0.093 _reflns.pdbx_Rsym_value 0.093 _reflns.pdbx_netI_over_sigmaI 15.19 _reflns.B_iso_Wilson_estimate 46.798 _reflns.pdbx_redundancy 7.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.90 _reflns_shell.percent_possible_all 93.8 _reflns_shell.Rmerge_I_obs 0.455 _reflns_shell.pdbx_Rsym_value 0.455 _reflns_shell.meanI_over_sigI_obs 4.60 _reflns_shell.pdbx_redundancy 7.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 618 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1YR9 _refine.ls_number_reflns_obs 6680 _refine.ls_number_reflns_all 6794 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 98.11 _refine.ls_R_factor_obs 0.232 _refine.ls_R_factor_all 0.232 _refine.ls_R_factor_R_work 0.225 _refine.ls_R_factor_R_free 0.346 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 663 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc .914 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 46.798 _refine.aniso_B[1][1] 1.29 _refine.aniso_B[2][2] -1.37 _refine.aniso_B[3][3] .08 _refine.aniso_B[1][2] .00 _refine.aniso_B[1][3] .00 _refine.aniso_B[2][3] .00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii .80 _refine.pdbx_solvent_shrinkage_radii .80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 1YR6 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML .230 _refine.overall_SU_B 10.880 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1999 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 24 _refine_hist.number_atoms_total 2056 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d .008 .022 ? 2080 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.175 2.012 ? 2822 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.736 5.000 ? 245 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.342 24.082 ? 98 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 21.117 15.000 ? 368 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.790 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr .067 .200 ? 312 'X-RAY DIFFRACTION' ? r_gen_planes_refined .003 .020 ? 1555 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined .293 .300 ? 1172 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined .347 .500 ? 1409 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined .282 .500 ? 148 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined .295 .300 ? 79 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined .197 .500 ? 6 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it .667 2.000 ? 1247 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.198 3.000 ? 1996 'X-RAY DIFFRACTION' ? r_scbond_it .716 3.000 ? 936 'X-RAY DIFFRACTION' ? r_scangle_it 1.092 4.000 ? 826 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 15 _refine_ls_shell.d_res_high 2.803 _refine_ls_shell.d_res_low 2.897 _refine_ls_shell.number_reflns_R_work 599 _refine_ls_shell.R_factor_R_work 0.26 _refine_ls_shell.percent_reflns_obs 95.38 _refine_ls_shell.R_factor_R_free 0.35 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.number_reflns_obs 538 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 1YR9 _struct.title 'PAB0955 crystal structure : a GTPase in GDP and PO4 bound form from Pyrococcus abyssi' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YR9 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'GTP binding protein, GTPase, P-loop, Rossmann Fold, GDP, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details 'the biological assembly is a dimer generated by two fold axis : -x +1, -y, z' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 26 ? GLU A 39 ? GLY A 12 GLU A 25 1 ? 14 HELX_P HELX_P2 2 THR A 69 ? GLY A 77 ? THR A 55 GLY A 63 1 ? 9 HELX_P HELX_P3 3 GLY A 79 ? MET A 92 ? GLY A 65 MET A 78 1 ? 14 HELX_P HELX_P4 4 LYS A 94 ? ARG A 104 ? LYS A 80 ARG A 90 1 ? 11 HELX_P HELX_P5 5 LEU A 105 ? ASN A 109 ? LEU A 91 ASN A 95 5 ? 5 HELX_P HELX_P6 6 GLN A 119 ? HIS A 126 ? GLN A 105 HIS A 112 1 ? 8 HELX_P HELX_P7 7 HIS A 126 ? ASN A 135 ? HIS A 112 ASN A 121 1 ? 10 HELX_P HELX_P8 8 ASP A 146 ? LEU A 150 ? ASP A 132 LEU A 136 5 ? 5 HELX_P HELX_P9 9 LYS A 152 ? GLY A 171 ? LYS A 138 GLY A 157 1 ? 20 HELX_P HELX_P10 10 GLU A 187 ? TYR A 195 ? GLU A 173 TYR A 181 1 ? 9 HELX_P HELX_P11 11 ILE A 199 ? LYS A 207 ? ILE A 185 LYS A 193 1 ? 9 HELX_P HELX_P12 12 SER A 211 ? CYS A 221 ? SER A 197 CYS A 207 1 ? 11 HELX_P HELX_P13 13 GLY A 243 ? CYS A 258 ? GLY A 229 CYS A 244 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 157 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 221 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 143 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 207 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.843 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 62 ? ASP A 63 ? ILE A 48 ASP A 49 A 2 VAL A 44 ? ASN A 48 ? VAL A 30 ASN A 34 A 3 TYR A 111 ? ASP A 115 ? TYR A 97 ASP A 101 A 4 MET A 15 ? VAL A 20 ? MET A 1 VAL A 6 A 5 LEU A 140 ? SER A 145 ? LEU A 126 SER A 131 A 6 THR A 174 ? LEU A 178 ? THR A 160 LEU A 164 A 7 LEU A 234 ? TYR A 235 ? LEU A 220 TYR A 221 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 62 ? O ILE A 48 N ASN A 48 ? N ASN A 34 A 2 3 N VAL A 47 ? N VAL A 33 O ASP A 115 ? O ASP A 101 A 3 4 O ILE A 114 ? O ILE A 100 N VAL A 17 ? N VAL A 3 A 4 5 N VAL A 20 ? N VAL A 6 O ILE A 144 ? O ILE A 130 A 5 6 N VAL A 141 ? N VAL A 127 O ILE A 175 ? O ILE A 161 A 6 7 N LEU A 178 ? N LEU A 164 O LEU A 234 ? O LEU A 220 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PO4 501 ? 5 'BINDING SITE FOR RESIDUE PO4 A 501' AC2 Software A GDP 401 ? 13 'BINDING SITE FOR RESIDUE GDP A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLY A 52 ? GLY A 38 . ? 1_555 ? 2 AC1 5 VAL A 53 ? VAL A 39 . ? 1_555 ? 3 AC1 5 LYS A 54 ? LYS A 40 . ? 1_555 ? 4 AC1 5 ASN A 81 ? ASN A 67 . ? 2_655 ? 5 AC1 5 GLY A 82 ? GLY A 68 . ? 2_655 ? 6 AC2 13 THR A 22 ? THR A 8 . ? 1_555 ? 7 AC2 13 GLY A 24 ? GLY A 10 . ? 1_555 ? 8 AC2 13 SER A 25 ? SER A 11 . ? 1_555 ? 9 AC2 13 GLY A 26 ? GLY A 12 . ? 1_555 ? 10 AC2 13 LYS A 27 ? LYS A 13 . ? 1_555 ? 11 AC2 13 THR A 28 ? THR A 14 . ? 1_555 ? 12 AC2 13 THR A 29 ? THR A 15 . ? 1_555 ? 13 AC2 13 ASN A 179 ? ASN A 165 . ? 1_555 ? 14 AC2 13 LYS A 180 ? LYS A 166 . ? 1_555 ? 15 AC2 13 ASP A 182 ? ASP A 168 . ? 1_555 ? 16 AC2 13 SER A 237 ? SER A 223 . ? 1_555 ? 17 AC2 13 ALA A 238 ? ALA A 224 . ? 1_555 ? 18 AC2 13 HOH D . ? HOH A 509 . ? 1_555 ? # _database_PDB_matrix.entry_id 1YR9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1YR9 _atom_sites.fract_transf_matrix[1][1] 0.017001 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011898 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018809 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 487 ? ? ? A . n A 1 2 ARG 2 488 ? ? ? A . n A 1 3 GLY 3 489 ? ? ? A . n A 1 4 SER 4 490 ? ? ? A . n A 1 5 HIS 5 491 ? ? ? A . n A 1 6 HIS 6 492 ? ? ? A . n A 1 7 HIS 7 493 ? ? ? A . n A 1 8 HIS 8 494 ? ? ? A . n A 1 9 HIS 9 495 ? ? ? A . n A 1 10 HIS 10 496 ? ? ? A . n A 1 11 GLY 11 497 ? ? ? A . n A 1 12 MET 12 498 ? ? ? A . n A 1 13 ALA 13 499 499 ALA ALA A . n A 1 14 SER 14 500 500 SER SER A . n A 1 15 MET 15 1 1 MET MET A . n A 1 16 ILE 16 2 2 ILE ILE A . n A 1 17 VAL 17 3 3 VAL VAL A . n A 1 18 VAL 18 4 4 VAL VAL A . n A 1 19 PHE 19 5 5 PHE PHE A . n A 1 20 VAL 20 6 6 VAL VAL A . n A 1 21 GLY 21 7 7 GLY GLY A . n A 1 22 THR 22 8 8 THR THR A . n A 1 23 ALA 23 9 9 ALA ALA A . n A 1 24 GLY 24 10 10 GLY GLY A . n A 1 25 SER 25 11 11 SER SER A . n A 1 26 GLY 26 12 12 GLY GLY A . n A 1 27 LYS 27 13 13 LYS LYS A . n A 1 28 THR 28 14 14 THR THR A . n A 1 29 THR 29 15 15 THR THR A . n A 1 30 LEU 30 16 16 LEU LEU A . n A 1 31 THR 31 17 17 THR THR A . n A 1 32 GLY 32 18 18 GLY GLY A . n A 1 33 GLU 33 19 19 GLU GLU A . n A 1 34 PHE 34 20 20 PHE PHE A . n A 1 35 GLY 35 21 21 GLY GLY A . n A 1 36 ARG 36 22 22 ARG ARG A . n A 1 37 TYR 37 23 23 TYR TYR A . n A 1 38 LEU 38 24 24 LEU LEU A . n A 1 39 GLU 39 25 25 GLU GLU A . n A 1 40 ASP 40 26 26 ASP ASP A . n A 1 41 ASN 41 27 27 ASN ASN A . n A 1 42 TYR 42 28 28 TYR TYR A . n A 1 43 LYS 43 29 29 LYS LYS A . n A 1 44 VAL 44 30 30 VAL VAL A . n A 1 45 ALA 45 31 31 ALA ALA A . n A 1 46 TYR 46 32 32 TYR TYR A . n A 1 47 VAL 47 33 33 VAL VAL A . n A 1 48 ASN 48 34 34 ASN ASN A . n A 1 49 LEU 49 35 35 LEU LEU A . n A 1 50 ASP 50 36 36 ASP ASP A . n A 1 51 THR 51 37 37 THR THR A . n A 1 52 GLY 52 38 38 GLY GLY A . n A 1 53 VAL 53 39 39 VAL VAL A . n A 1 54 LYS 54 40 40 LYS LYS A . n A 1 55 GLU 55 41 41 GLU GLU A . n A 1 56 LEU 56 42 42 LEU LEU A . n A 1 57 PRO 57 43 43 PRO PRO A . n A 1 58 TYR 58 44 44 TYR TYR A . n A 1 59 GLU 59 45 45 GLU GLU A . n A 1 60 PRO 60 46 46 PRO PRO A . n A 1 61 SER 61 47 47 SER SER A . n A 1 62 ILE 62 48 48 ILE ILE A . n A 1 63 ASP 63 49 49 ASP ASP A . n A 1 64 VAL 64 50 50 VAL VAL A . n A 1 65 ARG 65 51 51 ARG ARG A . n A 1 66 GLU 66 52 52 GLU GLU A . n A 1 67 PHE 67 53 53 PHE PHE A . n A 1 68 VAL 68 54 54 VAL VAL A . n A 1 69 THR 69 55 55 THR THR A . n A 1 70 VAL 70 56 56 VAL VAL A . n A 1 71 GLU 71 57 57 GLU GLU A . n A 1 72 GLU 72 58 58 GLU GLU A . n A 1 73 ILE 73 59 59 ILE ILE A . n A 1 74 MET 74 60 60 MET MET A . n A 1 75 ARG 75 61 61 ARG ARG A . n A 1 76 GLU 76 62 62 GLU GLU A . n A 1 77 GLY 77 63 63 GLY GLY A . n A 1 78 TYR 78 64 64 TYR TYR A . n A 1 79 GLY 79 65 65 GLY GLY A . n A 1 80 PRO 80 66 66 PRO PRO A . n A 1 81 ASN 81 67 67 ASN ASN A . n A 1 82 GLY 82 68 68 GLY GLY A . n A 1 83 ALA 83 69 69 ALA ALA A . n A 1 84 ILE 84 70 70 ILE ILE A . n A 1 85 VAL 85 71 71 VAL VAL A . n A 1 86 GLU 86 72 72 GLU GLU A . n A 1 87 SER 87 73 73 SER SER A . n A 1 88 TYR 88 74 74 TYR TYR A . n A 1 89 ASP 89 75 75 ASP ASP A . n A 1 90 ARG 90 76 76 ARG ARG A . n A 1 91 LEU 91 77 77 LEU LEU A . n A 1 92 MET 92 78 78 MET MET A . n A 1 93 GLU 93 79 79 GLU GLU A . n A 1 94 LYS 94 80 80 LYS LYS A . n A 1 95 PHE 95 81 81 PHE PHE A . n A 1 96 ASN 96 82 82 ASN ASN A . n A 1 97 GLU 97 83 83 GLU GLU A . n A 1 98 TYR 98 84 84 TYR TYR A . n A 1 99 LEU 99 85 85 LEU LEU A . n A 1 100 ASN 100 86 86 ASN ASN A . n A 1 101 LYS 101 87 87 LYS LYS A . n A 1 102 ILE 102 88 88 ILE ILE A . n A 1 103 LEU 103 89 89 LEU LEU A . n A 1 104 ARG 104 90 90 ARG ARG A . n A 1 105 LEU 105 91 91 LEU LEU A . n A 1 106 GLU 106 92 92 GLU GLU A . n A 1 107 LYS 107 93 93 LYS LYS A . n A 1 108 GLU 108 94 94 GLU GLU A . n A 1 109 ASN 109 95 95 ASN ASN A . n A 1 110 ASP 110 96 96 ASP ASP A . n A 1 111 TYR 111 97 97 TYR TYR A . n A 1 112 VAL 112 98 98 VAL VAL A . n A 1 113 LEU 113 99 99 LEU LEU A . n A 1 114 ILE 114 100 100 ILE ILE A . n A 1 115 ASP 115 101 101 ASP ASP A . n A 1 116 THR 116 102 102 THR THR A . n A 1 117 PRO 117 103 103 PRO PRO A . n A 1 118 GLY 118 104 104 GLY GLY A . n A 1 119 GLN 119 105 105 GLN GLN A . n A 1 120 MET 120 106 106 MET MET A . n A 1 121 GLU 121 107 107 GLU GLU A . n A 1 122 THR 122 108 108 THR THR A . n A 1 123 PHE 123 109 109 PHE PHE A . n A 1 124 LEU 124 110 110 LEU LEU A . n A 1 125 PHE 125 111 111 PHE PHE A . n A 1 126 HIS 126 112 112 HIS HIS A . n A 1 127 GLU 127 113 113 GLU GLU A . n A 1 128 PHE 128 114 114 PHE PHE A . n A 1 129 GLY 129 115 115 GLY GLY A . n A 1 130 VAL 130 116 116 VAL VAL A . n A 1 131 ARG 131 117 117 ARG ARG A . n A 1 132 LEU 132 118 118 LEU LEU A . n A 1 133 MET 133 119 119 MET MET A . n A 1 134 GLU 134 120 120 GLU GLU A . n A 1 135 ASN 135 121 121 ASN ASN A . n A 1 136 LEU 136 122 122 LEU LEU A . n A 1 137 PRO 137 123 123 PRO PRO A . n A 1 138 TYR 138 124 124 TYR TYR A . n A 1 139 PRO 139 125 125 PRO PRO A . n A 1 140 LEU 140 126 126 LEU LEU A . n A 1 141 VAL 141 127 127 VAL VAL A . n A 1 142 VAL 142 128 128 VAL VAL A . n A 1 143 TYR 143 129 129 TYR TYR A . n A 1 144 ILE 144 130 130 ILE ILE A . n A 1 145 SER 145 131 131 SER SER A . n A 1 146 ASP 146 132 132 ASP ASP A . n A 1 147 PRO 147 133 133 PRO PRO A . n A 1 148 GLU 148 134 134 GLU GLU A . n A 1 149 ILE 149 135 135 ILE ILE A . n A 1 150 LEU 150 136 136 LEU LEU A . n A 1 151 LYS 151 137 137 LYS LYS A . n A 1 152 LYS 152 138 138 LYS LYS A . n A 1 153 PRO 153 139 139 PRO PRO A . n A 1 154 ASN 154 140 140 ASN ASN A . n A 1 155 ASP 155 141 141 ASP ASP A . n A 1 156 TYR 156 142 142 TYR TYR A . n A 1 157 CYS 157 143 143 CYS CYS A . n A 1 158 PHE 158 144 144 PHE PHE A . n A 1 159 VAL 159 145 145 VAL VAL A . n A 1 160 ARG 160 146 146 ARG ARG A . n A 1 161 PHE 161 147 147 PHE PHE A . n A 1 162 PHE 162 148 148 PHE PHE A . n A 1 163 ALA 163 149 149 ALA ALA A . n A 1 164 LEU 164 150 150 LEU LEU A . n A 1 165 LEU 165 151 151 LEU LEU A . n A 1 166 ILE 166 152 152 ILE ILE A . n A 1 167 ASP 167 153 153 ASP ASP A . n A 1 168 LEU 168 154 154 LEU LEU A . n A 1 169 ARG 169 155 155 ARG ARG A . n A 1 170 LEU 170 156 156 LEU LEU A . n A 1 171 GLY 171 157 157 GLY GLY A . n A 1 172 ALA 172 158 158 ALA ALA A . n A 1 173 THR 173 159 159 THR THR A . n A 1 174 THR 174 160 160 THR THR A . n A 1 175 ILE 175 161 161 ILE ILE A . n A 1 176 PRO 176 162 162 PRO PRO A . n A 1 177 ALA 177 163 163 ALA ALA A . n A 1 178 LEU 178 164 164 LEU LEU A . n A 1 179 ASN 179 165 165 ASN ASN A . n A 1 180 LYS 180 166 166 LYS LYS A . n A 1 181 VAL 181 167 167 VAL VAL A . n A 1 182 ASP 182 168 168 ASP ASP A . n A 1 183 LEU 183 169 169 LEU LEU A . n A 1 184 LEU 184 170 170 LEU LEU A . n A 1 185 SER 185 171 171 SER SER A . n A 1 186 GLU 186 172 172 GLU GLU A . n A 1 187 GLU 187 173 173 GLU GLU A . n A 1 188 GLU 188 174 174 GLU GLU A . n A 1 189 LYS 189 175 175 LYS LYS A . n A 1 190 GLU 190 176 176 GLU GLU A . n A 1 191 ARG 191 177 177 ARG ARG A . n A 1 192 HIS 192 178 178 HIS HIS A . n A 1 193 ARG 193 179 179 ARG ARG A . n A 1 194 LYS 194 180 180 LYS LYS A . n A 1 195 TYR 195 181 181 TYR TYR A . n A 1 196 PHE 196 182 182 PHE PHE A . n A 1 197 GLU 197 183 183 GLU GLU A . n A 1 198 ASP 198 184 184 ASP ASP A . n A 1 199 ILE 199 185 185 ILE ILE A . n A 1 200 ASP 200 186 186 ASP ASP A . n A 1 201 TYR 201 187 187 TYR TYR A . n A 1 202 LEU 202 188 188 LEU LEU A . n A 1 203 THR 203 189 189 THR THR A . n A 1 204 ALA 204 190 190 ALA ALA A . n A 1 205 ARG 205 191 191 ARG ARG A . n A 1 206 LEU 206 192 192 LEU LEU A . n A 1 207 LYS 207 193 193 LYS LYS A . n A 1 208 LEU 208 194 194 LEU LEU A . n A 1 209 ASP 209 195 195 ASP ASP A . n A 1 210 PRO 210 196 196 PRO PRO A . n A 1 211 SER 211 197 197 SER SER A . n A 1 212 MET 212 198 198 MET MET A . n A 1 213 GLN 213 199 199 GLN GLN A . n A 1 214 GLY 214 200 200 GLY GLY A . n A 1 215 LEU 215 201 201 LEU LEU A . n A 1 216 MET 216 202 202 MET MET A . n A 1 217 ALA 217 203 203 ALA ALA A . n A 1 218 TYR 218 204 204 TYR TYR A . n A 1 219 LYS 219 205 205 LYS LYS A . n A 1 220 MET 220 206 206 MET MET A . n A 1 221 CYS 221 207 207 CYS CYS A . n A 1 222 SER 222 208 208 SER SER A . n A 1 223 MET 223 209 209 MET MET A . n A 1 224 MET 224 210 210 MET MET A . n A 1 225 THR 225 211 211 THR THR A . n A 1 226 GLU 226 212 212 GLU GLU A . n A 1 227 VAL 227 213 213 VAL VAL A . n A 1 228 LEU 228 214 214 LEU LEU A . n A 1 229 PRO 229 215 215 PRO PRO A . n A 1 230 PRO 230 216 216 PRO PRO A . n A 1 231 VAL 231 217 217 VAL VAL A . n A 1 232 ARG 232 218 218 ARG ARG A . n A 1 233 VAL 233 219 219 VAL VAL A . n A 1 234 LEU 234 220 220 LEU LEU A . n A 1 235 TYR 235 221 221 TYR TYR A . n A 1 236 LEU 236 222 222 LEU LEU A . n A 1 237 SER 237 223 223 SER SER A . n A 1 238 ALA 238 224 224 ALA ALA A . n A 1 239 LYS 239 225 225 LYS LYS A . n A 1 240 THR 240 226 226 THR THR A . n A 1 241 ARG 241 227 227 ARG ARG A . n A 1 242 GLU 242 228 228 GLU GLU A . n A 1 243 GLY 243 229 229 GLY GLY A . n A 1 244 PHE 244 230 230 PHE PHE A . n A 1 245 GLU 245 231 231 GLU GLU A . n A 1 246 ASP 246 232 232 ASP ASP A . n A 1 247 LEU 247 233 233 LEU LEU A . n A 1 248 GLU 248 234 234 GLU GLU A . n A 1 249 THR 249 235 235 THR THR A . n A 1 250 LEU 250 236 236 LEU LEU A . n A 1 251 ALA 251 237 237 ALA ALA A . n A 1 252 TYR 252 238 238 TYR TYR A . n A 1 253 GLU 253 239 239 GLU GLU A . n A 1 254 HIS 254 240 240 HIS HIS A . n A 1 255 TYR 255 241 241 TYR TYR A . n A 1 256 CYS 256 242 242 CYS CYS A . n A 1 257 THR 257 243 243 THR THR A . n A 1 258 CYS 258 244 244 CYS CYS A . n A 1 259 GLY 259 245 ? ? ? A . n A 1 260 ASP 260 246 ? ? ? A . n A 1 261 LEU 261 247 ? ? ? A . n A 1 262 THR 262 248 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 501 102 PO4 PO4 A . C 3 GDP 1 401 401 GDP GDP A . D 4 HOH 1 502 1 HOH HOH A . D 4 HOH 2 503 2 HOH HOH A . D 4 HOH 3 504 3 HOH HOH A . D 4 HOH 4 505 4 HOH HOH A . D 4 HOH 5 506 5 HOH HOH A . D 4 HOH 6 507 6 HOH HOH A . D 4 HOH 7 508 7 HOH HOH A . D 4 HOH 8 509 8 HOH HOH A . D 4 HOH 9 510 9 HOH HOH A . D 4 HOH 10 511 10 HOH HOH A . D 4 HOH 11 512 11 HOH HOH A . D 4 HOH 12 513 12 HOH HOH A . D 4 HOH 13 514 13 HOH HOH A . D 4 HOH 14 515 14 HOH HOH A . D 4 HOH 15 516 15 HOH HOH A . D 4 HOH 16 517 16 HOH HOH A . D 4 HOH 17 518 17 HOH HOH A . D 4 HOH 18 519 18 HOH HOH A . D 4 HOH 19 520 19 HOH HOH A . D 4 HOH 20 521 20 HOH HOH A . D 4 HOH 21 522 21 HOH HOH A . D 4 HOH 22 523 22 HOH HOH A . D 4 HOH 23 524 23 HOH HOH A . D 4 HOH 24 525 24 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6430 ? 1 MORE -64 ? 1 'SSA (A^2)' 19990 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 58.8200000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-02-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2014-11-12 5 'Structure model' 1 4 2017-10-11 6 'Structure model' 1 5 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Structure summary' 5 5 'Structure model' 'Refinement description' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' 8 6 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' software 2 6 'Structure model' chem_comp_atom 3 6 'Structure model' chem_comp_bond 4 6 'Structure model' database_2 5 6 'Structure model' pdbx_initial_refinement_model 6 6 'Structure model' struct_ref_seq_dif 7 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.classification' 2 5 'Structure model' '_software.name' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' 5 6 'Structure model' '_struct_ref_seq_dif.details' 6 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 ProDC 'data collection' . ? 2 XDS 'data scaling' . ? 3 AMoRE phasing . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 58 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 NH1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ARG _pdbx_validate_close_contact.auth_seq_id_2 61 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.01 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 PRO _pdbx_validate_rmsd_angle.auth_seq_id_1 215 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 216 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 216 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 129.64 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation 10.34 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 43 ? ? -63.94 0.17 2 1 GLU A 52 ? ? -34.70 -27.08 3 1 GLU A 58 ? ? -68.41 -73.68 4 1 ILE A 59 ? ? -37.14 -14.80 5 1 ARG A 61 ? ? -56.47 15.31 6 1 TYR A 64 ? ? -43.82 157.58 7 1 PRO A 66 ? ? -38.04 -74.33 8 1 MET A 78 ? ? -60.03 12.66 9 1 GLU A 83 ? ? -62.81 -70.57 10 1 LEU A 85 ? ? -57.05 -83.80 11 1 ASN A 86 ? ? -29.18 -40.39 12 1 ARG A 90 ? ? -58.39 -2.52 13 1 LYS A 93 ? ? -87.21 34.41 14 1 GLU A 94 ? ? -144.42 19.91 15 1 GLN A 105 ? ? -68.61 83.09 16 1 MET A 106 ? ? -36.83 -39.85 17 1 GLU A 113 ? ? -29.23 -36.66 18 1 GLU A 134 ? ? -78.60 20.22 19 1 ALA A 158 ? ? -176.87 136.19 20 1 LEU A 169 ? ? -63.20 19.51 21 1 SER A 171 ? ? -101.44 -156.60 22 1 GLU A 172 ? ? -96.83 -69.49 23 1 LYS A 175 ? ? -75.76 20.22 24 1 GLU A 176 ? ? -143.90 -25.91 25 1 PHE A 182 ? ? -172.15 -95.40 26 1 SER A 208 ? ? 89.60 12.39 27 1 GLU A 212 ? ? -59.60 -101.62 28 1 LEU A 214 ? ? 146.84 80.13 29 1 PRO A 215 ? ? -22.45 132.92 30 1 VAL A 217 ? ? 83.88 142.57 31 1 THR A 226 ? ? -96.98 31.92 32 1 ARG A 227 ? ? 38.83 35.07 33 1 THR A 235 ? ? -50.57 -75.18 34 1 LEU A 236 ? ? -29.59 -55.80 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 487 ? A MET 1 2 1 Y 1 A ARG 488 ? A ARG 2 3 1 Y 1 A GLY 489 ? A GLY 3 4 1 Y 1 A SER 490 ? A SER 4 5 1 Y 1 A HIS 491 ? A HIS 5 6 1 Y 1 A HIS 492 ? A HIS 6 7 1 Y 1 A HIS 493 ? A HIS 7 8 1 Y 1 A HIS 494 ? A HIS 8 9 1 Y 1 A HIS 495 ? A HIS 9 10 1 Y 1 A HIS 496 ? A HIS 10 11 1 Y 1 A GLY 497 ? A GLY 11 12 1 Y 1 A MET 498 ? A MET 12 13 1 Y 1 A GLY 245 ? A GLY 259 14 1 Y 1 A ASP 246 ? A ASP 260 15 1 Y 1 A LEU 247 ? A LEU 261 16 1 Y 1 A THR 248 ? A THR 262 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GDP PB P N N 88 GDP O1B O N N 89 GDP O2B O N N 90 GDP O3B O N N 91 GDP O3A O N N 92 GDP PA P N N 93 GDP O1A O N N 94 GDP O2A O N N 95 GDP "O5'" O N N 96 GDP "C5'" C N N 97 GDP "C4'" C N R 98 GDP "O4'" O N N 99 GDP "C3'" C N S 100 GDP "O3'" O N N 101 GDP "C2'" C N R 102 GDP "O2'" O N N 103 GDP "C1'" C N R 104 GDP N9 N Y N 105 GDP C8 C Y N 106 GDP N7 N Y N 107 GDP C5 C Y N 108 GDP C6 C N N 109 GDP O6 O N N 110 GDP N1 N N N 111 GDP C2 C N N 112 GDP N2 N N N 113 GDP N3 N N N 114 GDP C4 C Y N 115 GDP HOB2 H N N 116 GDP HOB3 H N N 117 GDP HOA2 H N N 118 GDP "H5'" H N N 119 GDP "H5''" H N N 120 GDP "H4'" H N N 121 GDP "H3'" H N N 122 GDP "HO3'" H N N 123 GDP "H2'" H N N 124 GDP "HO2'" H N N 125 GDP "H1'" H N N 126 GDP H8 H N N 127 GDP HN1 H N N 128 GDP HN21 H N N 129 GDP HN22 H N N 130 GLN N N N N 131 GLN CA C N S 132 GLN C C N N 133 GLN O O N N 134 GLN CB C N N 135 GLN CG C N N 136 GLN CD C N N 137 GLN OE1 O N N 138 GLN NE2 N N N 139 GLN OXT O N N 140 GLN H H N N 141 GLN H2 H N N 142 GLN HA H N N 143 GLN HB2 H N N 144 GLN HB3 H N N 145 GLN HG2 H N N 146 GLN HG3 H N N 147 GLN HE21 H N N 148 GLN HE22 H N N 149 GLN HXT H N N 150 GLU N N N N 151 GLU CA C N S 152 GLU C C N N 153 GLU O O N N 154 GLU CB C N N 155 GLU CG C N N 156 GLU CD C N N 157 GLU OE1 O N N 158 GLU OE2 O N N 159 GLU OXT O N N 160 GLU H H N N 161 GLU H2 H N N 162 GLU HA H N N 163 GLU HB2 H N N 164 GLU HB3 H N N 165 GLU HG2 H N N 166 GLU HG3 H N N 167 GLU HE2 H N N 168 GLU HXT H N N 169 GLY N N N N 170 GLY CA C N N 171 GLY C C N N 172 GLY O O N N 173 GLY OXT O N N 174 GLY H H N N 175 GLY H2 H N N 176 GLY HA2 H N N 177 GLY HA3 H N N 178 GLY HXT H N N 179 HIS N N N N 180 HIS CA C N S 181 HIS C C N N 182 HIS O O N N 183 HIS CB C N N 184 HIS CG C Y N 185 HIS ND1 N Y N 186 HIS CD2 C Y N 187 HIS CE1 C Y N 188 HIS NE2 N Y N 189 HIS OXT O N N 190 HIS H H N N 191 HIS H2 H N N 192 HIS HA H N N 193 HIS HB2 H N N 194 HIS HB3 H N N 195 HIS HD1 H N N 196 HIS HD2 H N N 197 HIS HE1 H N N 198 HIS HE2 H N N 199 HIS HXT H N N 200 HOH O O N N 201 HOH H1 H N N 202 HOH H2 H N N 203 ILE N N N N 204 ILE CA C N S 205 ILE C C N N 206 ILE O O N N 207 ILE CB C N S 208 ILE CG1 C N N 209 ILE CG2 C N N 210 ILE CD1 C N N 211 ILE OXT O N N 212 ILE H H N N 213 ILE H2 H N N 214 ILE HA H N N 215 ILE HB H N N 216 ILE HG12 H N N 217 ILE HG13 H N N 218 ILE HG21 H N N 219 ILE HG22 H N N 220 ILE HG23 H N N 221 ILE HD11 H N N 222 ILE HD12 H N N 223 ILE HD13 H N N 224 ILE HXT H N N 225 LEU N N N N 226 LEU CA C N S 227 LEU C C N N 228 LEU O O N N 229 LEU CB C N N 230 LEU CG C N N 231 LEU CD1 C N N 232 LEU CD2 C N N 233 LEU OXT O N N 234 LEU H H N N 235 LEU H2 H N N 236 LEU HA H N N 237 LEU HB2 H N N 238 LEU HB3 H N N 239 LEU HG H N N 240 LEU HD11 H N N 241 LEU HD12 H N N 242 LEU HD13 H N N 243 LEU HD21 H N N 244 LEU HD22 H N N 245 LEU HD23 H N N 246 LEU HXT H N N 247 LYS N N N N 248 LYS CA C N S 249 LYS C C N N 250 LYS O O N N 251 LYS CB C N N 252 LYS CG C N N 253 LYS CD C N N 254 LYS CE C N N 255 LYS NZ N N N 256 LYS OXT O N N 257 LYS H H N N 258 LYS H2 H N N 259 LYS HA H N N 260 LYS HB2 H N N 261 LYS HB3 H N N 262 LYS HG2 H N N 263 LYS HG3 H N N 264 LYS HD2 H N N 265 LYS HD3 H N N 266 LYS HE2 H N N 267 LYS HE3 H N N 268 LYS HZ1 H N N 269 LYS HZ2 H N N 270 LYS HZ3 H N N 271 LYS HXT H N N 272 MET N N N N 273 MET CA C N S 274 MET C C N N 275 MET O O N N 276 MET CB C N N 277 MET CG C N N 278 MET SD S N N 279 MET CE C N N 280 MET OXT O N N 281 MET H H N N 282 MET H2 H N N 283 MET HA H N N 284 MET HB2 H N N 285 MET HB3 H N N 286 MET HG2 H N N 287 MET HG3 H N N 288 MET HE1 H N N 289 MET HE2 H N N 290 MET HE3 H N N 291 MET HXT H N N 292 PHE N N N N 293 PHE CA C N S 294 PHE C C N N 295 PHE O O N N 296 PHE CB C N N 297 PHE CG C Y N 298 PHE CD1 C Y N 299 PHE CD2 C Y N 300 PHE CE1 C Y N 301 PHE CE2 C Y N 302 PHE CZ C Y N 303 PHE OXT O N N 304 PHE H H N N 305 PHE H2 H N N 306 PHE HA H N N 307 PHE HB2 H N N 308 PHE HB3 H N N 309 PHE HD1 H N N 310 PHE HD2 H N N 311 PHE HE1 H N N 312 PHE HE2 H N N 313 PHE HZ H N N 314 PHE HXT H N N 315 PO4 P P N N 316 PO4 O1 O N N 317 PO4 O2 O N N 318 PO4 O3 O N N 319 PO4 O4 O N N 320 PRO N N N N 321 PRO CA C N S 322 PRO C C N N 323 PRO O O N N 324 PRO CB C N N 325 PRO CG C N N 326 PRO CD C N N 327 PRO OXT O N N 328 PRO H H N N 329 PRO HA H N N 330 PRO HB2 H N N 331 PRO HB3 H N N 332 PRO HG2 H N N 333 PRO HG3 H N N 334 PRO HD2 H N N 335 PRO HD3 H N N 336 PRO HXT H N N 337 SER N N N N 338 SER CA C N S 339 SER C C N N 340 SER O O N N 341 SER CB C N N 342 SER OG O N N 343 SER OXT O N N 344 SER H H N N 345 SER H2 H N N 346 SER HA H N N 347 SER HB2 H N N 348 SER HB3 H N N 349 SER HG H N N 350 SER HXT H N N 351 THR N N N N 352 THR CA C N S 353 THR C C N N 354 THR O O N N 355 THR CB C N R 356 THR OG1 O N N 357 THR CG2 C N N 358 THR OXT O N N 359 THR H H N N 360 THR H2 H N N 361 THR HA H N N 362 THR HB H N N 363 THR HG1 H N N 364 THR HG21 H N N 365 THR HG22 H N N 366 THR HG23 H N N 367 THR HXT H N N 368 TYR N N N N 369 TYR CA C N S 370 TYR C C N N 371 TYR O O N N 372 TYR CB C N N 373 TYR CG C Y N 374 TYR CD1 C Y N 375 TYR CD2 C Y N 376 TYR CE1 C Y N 377 TYR CE2 C Y N 378 TYR CZ C Y N 379 TYR OH O N N 380 TYR OXT O N N 381 TYR H H N N 382 TYR H2 H N N 383 TYR HA H N N 384 TYR HB2 H N N 385 TYR HB3 H N N 386 TYR HD1 H N N 387 TYR HD2 H N N 388 TYR HE1 H N N 389 TYR HE2 H N N 390 TYR HH H N N 391 TYR HXT H N N 392 VAL N N N N 393 VAL CA C N S 394 VAL C C N N 395 VAL O O N N 396 VAL CB C N N 397 VAL CG1 C N N 398 VAL CG2 C N N 399 VAL OXT O N N 400 VAL H H N N 401 VAL H2 H N N 402 VAL HA H N N 403 VAL HB H N N 404 VAL HG11 H N N 405 VAL HG12 H N N 406 VAL HG13 H N N 407 VAL HG21 H N N 408 VAL HG22 H N N 409 VAL HG23 H N N 410 VAL HXT H N N 411 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GDP PB O1B doub N N 83 GDP PB O2B sing N N 84 GDP PB O3B sing N N 85 GDP PB O3A sing N N 86 GDP O2B HOB2 sing N N 87 GDP O3B HOB3 sing N N 88 GDP O3A PA sing N N 89 GDP PA O1A doub N N 90 GDP PA O2A sing N N 91 GDP PA "O5'" sing N N 92 GDP O2A HOA2 sing N N 93 GDP "O5'" "C5'" sing N N 94 GDP "C5'" "C4'" sing N N 95 GDP "C5'" "H5'" sing N N 96 GDP "C5'" "H5''" sing N N 97 GDP "C4'" "O4'" sing N N 98 GDP "C4'" "C3'" sing N N 99 GDP "C4'" "H4'" sing N N 100 GDP "O4'" "C1'" sing N N 101 GDP "C3'" "O3'" sing N N 102 GDP "C3'" "C2'" sing N N 103 GDP "C3'" "H3'" sing N N 104 GDP "O3'" "HO3'" sing N N 105 GDP "C2'" "O2'" sing N N 106 GDP "C2'" "C1'" sing N N 107 GDP "C2'" "H2'" sing N N 108 GDP "O2'" "HO2'" sing N N 109 GDP "C1'" N9 sing N N 110 GDP "C1'" "H1'" sing N N 111 GDP N9 C8 sing Y N 112 GDP N9 C4 sing Y N 113 GDP C8 N7 doub Y N 114 GDP C8 H8 sing N N 115 GDP N7 C5 sing Y N 116 GDP C5 C6 sing N N 117 GDP C5 C4 doub Y N 118 GDP C6 O6 doub N N 119 GDP C6 N1 sing N N 120 GDP N1 C2 sing N N 121 GDP N1 HN1 sing N N 122 GDP C2 N2 sing N N 123 GDP C2 N3 doub N N 124 GDP N2 HN21 sing N N 125 GDP N2 HN22 sing N N 126 GDP N3 C4 sing N N 127 GLN N CA sing N N 128 GLN N H sing N N 129 GLN N H2 sing N N 130 GLN CA C sing N N 131 GLN CA CB sing N N 132 GLN CA HA sing N N 133 GLN C O doub N N 134 GLN C OXT sing N N 135 GLN CB CG sing N N 136 GLN CB HB2 sing N N 137 GLN CB HB3 sing N N 138 GLN CG CD sing N N 139 GLN CG HG2 sing N N 140 GLN CG HG3 sing N N 141 GLN CD OE1 doub N N 142 GLN CD NE2 sing N N 143 GLN NE2 HE21 sing N N 144 GLN NE2 HE22 sing N N 145 GLN OXT HXT sing N N 146 GLU N CA sing N N 147 GLU N H sing N N 148 GLU N H2 sing N N 149 GLU CA C sing N N 150 GLU CA CB sing N N 151 GLU CA HA sing N N 152 GLU C O doub N N 153 GLU C OXT sing N N 154 GLU CB CG sing N N 155 GLU CB HB2 sing N N 156 GLU CB HB3 sing N N 157 GLU CG CD sing N N 158 GLU CG HG2 sing N N 159 GLU CG HG3 sing N N 160 GLU CD OE1 doub N N 161 GLU CD OE2 sing N N 162 GLU OE2 HE2 sing N N 163 GLU OXT HXT sing N N 164 GLY N CA sing N N 165 GLY N H sing N N 166 GLY N H2 sing N N 167 GLY CA C sing N N 168 GLY CA HA2 sing N N 169 GLY CA HA3 sing N N 170 GLY C O doub N N 171 GLY C OXT sing N N 172 GLY OXT HXT sing N N 173 HIS N CA sing N N 174 HIS N H sing N N 175 HIS N H2 sing N N 176 HIS CA C sing N N 177 HIS CA CB sing N N 178 HIS CA HA sing N N 179 HIS C O doub N N 180 HIS C OXT sing N N 181 HIS CB CG sing N N 182 HIS CB HB2 sing N N 183 HIS CB HB3 sing N N 184 HIS CG ND1 sing Y N 185 HIS CG CD2 doub Y N 186 HIS ND1 CE1 doub Y N 187 HIS ND1 HD1 sing N N 188 HIS CD2 NE2 sing Y N 189 HIS CD2 HD2 sing N N 190 HIS CE1 NE2 sing Y N 191 HIS CE1 HE1 sing N N 192 HIS NE2 HE2 sing N N 193 HIS OXT HXT sing N N 194 HOH O H1 sing N N 195 HOH O H2 sing N N 196 ILE N CA sing N N 197 ILE N H sing N N 198 ILE N H2 sing N N 199 ILE CA C sing N N 200 ILE CA CB sing N N 201 ILE CA HA sing N N 202 ILE C O doub N N 203 ILE C OXT sing N N 204 ILE CB CG1 sing N N 205 ILE CB CG2 sing N N 206 ILE CB HB sing N N 207 ILE CG1 CD1 sing N N 208 ILE CG1 HG12 sing N N 209 ILE CG1 HG13 sing N N 210 ILE CG2 HG21 sing N N 211 ILE CG2 HG22 sing N N 212 ILE CG2 HG23 sing N N 213 ILE CD1 HD11 sing N N 214 ILE CD1 HD12 sing N N 215 ILE CD1 HD13 sing N N 216 ILE OXT HXT sing N N 217 LEU N CA sing N N 218 LEU N H sing N N 219 LEU N H2 sing N N 220 LEU CA C sing N N 221 LEU CA CB sing N N 222 LEU CA HA sing N N 223 LEU C O doub N N 224 LEU C OXT sing N N 225 LEU CB CG sing N N 226 LEU CB HB2 sing N N 227 LEU CB HB3 sing N N 228 LEU CG CD1 sing N N 229 LEU CG CD2 sing N N 230 LEU CG HG sing N N 231 LEU CD1 HD11 sing N N 232 LEU CD1 HD12 sing N N 233 LEU CD1 HD13 sing N N 234 LEU CD2 HD21 sing N N 235 LEU CD2 HD22 sing N N 236 LEU CD2 HD23 sing N N 237 LEU OXT HXT sing N N 238 LYS N CA sing N N 239 LYS N H sing N N 240 LYS N H2 sing N N 241 LYS CA C sing N N 242 LYS CA CB sing N N 243 LYS CA HA sing N N 244 LYS C O doub N N 245 LYS C OXT sing N N 246 LYS CB CG sing N N 247 LYS CB HB2 sing N N 248 LYS CB HB3 sing N N 249 LYS CG CD sing N N 250 LYS CG HG2 sing N N 251 LYS CG HG3 sing N N 252 LYS CD CE sing N N 253 LYS CD HD2 sing N N 254 LYS CD HD3 sing N N 255 LYS CE NZ sing N N 256 LYS CE HE2 sing N N 257 LYS CE HE3 sing N N 258 LYS NZ HZ1 sing N N 259 LYS NZ HZ2 sing N N 260 LYS NZ HZ3 sing N N 261 LYS OXT HXT sing N N 262 MET N CA sing N N 263 MET N H sing N N 264 MET N H2 sing N N 265 MET CA C sing N N 266 MET CA CB sing N N 267 MET CA HA sing N N 268 MET C O doub N N 269 MET C OXT sing N N 270 MET CB CG sing N N 271 MET CB HB2 sing N N 272 MET CB HB3 sing N N 273 MET CG SD sing N N 274 MET CG HG2 sing N N 275 MET CG HG3 sing N N 276 MET SD CE sing N N 277 MET CE HE1 sing N N 278 MET CE HE2 sing N N 279 MET CE HE3 sing N N 280 MET OXT HXT sing N N 281 PHE N CA sing N N 282 PHE N H sing N N 283 PHE N H2 sing N N 284 PHE CA C sing N N 285 PHE CA CB sing N N 286 PHE CA HA sing N N 287 PHE C O doub N N 288 PHE C OXT sing N N 289 PHE CB CG sing N N 290 PHE CB HB2 sing N N 291 PHE CB HB3 sing N N 292 PHE CG CD1 doub Y N 293 PHE CG CD2 sing Y N 294 PHE CD1 CE1 sing Y N 295 PHE CD1 HD1 sing N N 296 PHE CD2 CE2 doub Y N 297 PHE CD2 HD2 sing N N 298 PHE CE1 CZ doub Y N 299 PHE CE1 HE1 sing N N 300 PHE CE2 CZ sing Y N 301 PHE CE2 HE2 sing N N 302 PHE CZ HZ sing N N 303 PHE OXT HXT sing N N 304 PO4 P O1 doub N N 305 PO4 P O2 sing N N 306 PO4 P O3 sing N N 307 PO4 P O4 sing N N 308 PRO N CA sing N N 309 PRO N CD sing N N 310 PRO N H sing N N 311 PRO CA C sing N N 312 PRO CA CB sing N N 313 PRO CA HA sing N N 314 PRO C O doub N N 315 PRO C OXT sing N N 316 PRO CB CG sing N N 317 PRO CB HB2 sing N N 318 PRO CB HB3 sing N N 319 PRO CG CD sing N N 320 PRO CG HG2 sing N N 321 PRO CG HG3 sing N N 322 PRO CD HD2 sing N N 323 PRO CD HD3 sing N N 324 PRO OXT HXT sing N N 325 SER N CA sing N N 326 SER N H sing N N 327 SER N H2 sing N N 328 SER CA C sing N N 329 SER CA CB sing N N 330 SER CA HA sing N N 331 SER C O doub N N 332 SER C OXT sing N N 333 SER CB OG sing N N 334 SER CB HB2 sing N N 335 SER CB HB3 sing N N 336 SER OG HG sing N N 337 SER OXT HXT sing N N 338 THR N CA sing N N 339 THR N H sing N N 340 THR N H2 sing N N 341 THR CA C sing N N 342 THR CA CB sing N N 343 THR CA HA sing N N 344 THR C O doub N N 345 THR C OXT sing N N 346 THR CB OG1 sing N N 347 THR CB CG2 sing N N 348 THR CB HB sing N N 349 THR OG1 HG1 sing N N 350 THR CG2 HG21 sing N N 351 THR CG2 HG22 sing N N 352 THR CG2 HG23 sing N N 353 THR OXT HXT sing N N 354 TYR N CA sing N N 355 TYR N H sing N N 356 TYR N H2 sing N N 357 TYR CA C sing N N 358 TYR CA CB sing N N 359 TYR CA HA sing N N 360 TYR C O doub N N 361 TYR C OXT sing N N 362 TYR CB CG sing N N 363 TYR CB HB2 sing N N 364 TYR CB HB3 sing N N 365 TYR CG CD1 doub Y N 366 TYR CG CD2 sing Y N 367 TYR CD1 CE1 sing Y N 368 TYR CD1 HD1 sing N N 369 TYR CD2 CE2 doub Y N 370 TYR CD2 HD2 sing N N 371 TYR CE1 CZ doub Y N 372 TYR CE1 HE1 sing N N 373 TYR CE2 CZ sing Y N 374 TYR CE2 HE2 sing N N 375 TYR CZ OH sing N N 376 TYR OH HH sing N N 377 TYR OXT HXT sing N N 378 VAL N CA sing N N 379 VAL N H sing N N 380 VAL N H2 sing N N 381 VAL CA C sing N N 382 VAL CA CB sing N N 383 VAL CA HA sing N N 384 VAL C O doub N N 385 VAL C OXT sing N N 386 VAL CB CG1 sing N N 387 VAL CB CG2 sing N N 388 VAL CB HB sing N N 389 VAL CG1 HG11 sing N N 390 VAL CG1 HG12 sing N N 391 VAL CG1 HG13 sing N N 392 VAL CG2 HG21 sing N N 393 VAL CG2 HG22 sing N N 394 VAL CG2 HG23 sing N N 395 VAL OXT HXT sing N N 396 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 "GUANOSINE-5'-DIPHOSPHATE" GDP 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1YR6 _pdbx_initial_refinement_model.details ? #