data_1YRK # _entry.id 1YRK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YRK pdb_00001yrk 10.2210/pdb1yrk/pdb RCSB RCSB031849 ? ? WWPDB D_1000031849 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_entry_details 5 4 'Structure model' pdbx_modification_feature 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YRK _pdbx_database_status.recvd_initial_deposition_date 2005-02-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry N _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1BDY _pdbx_database_related.details 'C2 Domain From Protein Kinase C Delta' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Benes, C.H.' 1 'Wu, N.' 2 'Elia, A.E.' 3 'Dharia, T.' 4 'Cantley, L.C.' 5 'Soltoff, S.P.' 6 # _citation.id primary _citation.title 'The C2 domain of PKCdelta is a phosphotyrosine binding domain.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 121 _citation.page_first 271 _citation.page_last 280 _citation.year 2005 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15851022 _citation.pdbx_database_id_DOI 10.1016/j.cell.2005.02.019 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Benes, C.H.' 1 ? primary 'Wu, N.' 2 ? primary 'Elia, A.E.' 3 ? primary 'Dharia, T.' 4 ? primary 'Cantley, L.C.' 5 ? primary 'Soltoff, S.P.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein kinase C, delta type' 14287.434 1 ? ? 'C2 domain, residues 1-123' ? 2 polymer syn '13-residue peptide' 1645.809 1 ? ? ? 'an optimal peptide motif for C2 binding' 3 non-polymer syn 'ACETIC ACID' 60.052 1 ? ? ? ? 4 water nat water 18.015 220 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name nPKC-delta # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHMAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAA EEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQAKVLMSVQYFLE ; ;GSHMAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAA EEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQAKVLMSVQYFLE ; A ? 2 'polypeptide(L)' no yes 'MALYSI(PTR)QPYVFA' MALYSIYQPYVFA B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ACETIC ACID' ACY 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 PRO n 1 7 PHE n 1 8 LEU n 1 9 ARG n 1 10 ILE n 1 11 ALA n 1 12 PHE n 1 13 ASN n 1 14 SER n 1 15 TYR n 1 16 GLU n 1 17 LEU n 1 18 GLY n 1 19 SER n 1 20 LEU n 1 21 GLN n 1 22 ALA n 1 23 GLU n 1 24 ASP n 1 25 GLU n 1 26 ALA n 1 27 ASN n 1 28 GLN n 1 29 PRO n 1 30 PHE n 1 31 CYS n 1 32 ALA n 1 33 VAL n 1 34 LYS n 1 35 MET n 1 36 LYS n 1 37 GLU n 1 38 ALA n 1 39 LEU n 1 40 SER n 1 41 THR n 1 42 GLU n 1 43 ARG n 1 44 GLY n 1 45 LYS n 1 46 THR n 1 47 LEU n 1 48 VAL n 1 49 GLN n 1 50 LYS n 1 51 LYS n 1 52 PRO n 1 53 THR n 1 54 MET n 1 55 TYR n 1 56 PRO n 1 57 GLU n 1 58 TRP n 1 59 LYS n 1 60 SER n 1 61 THR n 1 62 PHE n 1 63 ASP n 1 64 ALA n 1 65 HIS n 1 66 ILE n 1 67 TYR n 1 68 GLU n 1 69 GLY n 1 70 ARG n 1 71 VAL n 1 72 ILE n 1 73 GLN n 1 74 ILE n 1 75 VAL n 1 76 LEU n 1 77 MET n 1 78 ARG n 1 79 ALA n 1 80 ALA n 1 81 GLU n 1 82 GLU n 1 83 PRO n 1 84 VAL n 1 85 SER n 1 86 GLU n 1 87 VAL n 1 88 THR n 1 89 VAL n 1 90 GLY n 1 91 VAL n 1 92 SER n 1 93 VAL n 1 94 LEU n 1 95 ALA n 1 96 GLU n 1 97 ARG n 1 98 CYS n 1 99 LYS n 1 100 LYS n 1 101 ASN n 1 102 ASN n 1 103 GLY n 1 104 LYS n 1 105 ALA n 1 106 GLU n 1 107 PHE n 1 108 TRP n 1 109 LEU n 1 110 ASP n 1 111 LEU n 1 112 GLN n 1 113 PRO n 1 114 GLN n 1 115 ALA n 1 116 LYS n 1 117 VAL n 1 118 LEU n 1 119 MET n 1 120 SER n 1 121 VAL n 1 122 GLN n 1 123 TYR n 1 124 PHE n 1 125 LEU n 1 126 GLU n 2 1 MET n 2 2 ALA n 2 3 LEU n 2 4 TYR n 2 5 SER n 2 6 ILE n 2 7 PTR n 2 8 GLN n 2 9 PRO n 2 10 TYR n 2 11 VAL n 2 12 PHE n 2 13 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) codon plus' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'The peptide was chemically synthesized' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PTR 'L-peptide linking' n O-PHOSPHOTYROSINE PHOSPHONOTYROSINE 'C9 H12 N O6 P' 261.168 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 -2 GLY GLY A . n A 1 2 SER 2 -1 -1 SER SER A . n A 1 3 HIS 3 0 0 HIS HIS A . n A 1 4 MET 4 1 1 MET MET A . n A 1 5 ALA 5 2 2 ALA ALA A . n A 1 6 PRO 6 3 3 PRO PRO A . n A 1 7 PHE 7 4 4 PHE PHE A . n A 1 8 LEU 8 5 5 LEU LEU A . n A 1 9 ARG 9 6 6 ARG ARG A . n A 1 10 ILE 10 7 7 ILE ILE A . n A 1 11 ALA 11 8 8 ALA ALA A . n A 1 12 PHE 12 9 9 PHE PHE A . n A 1 13 ASN 13 10 10 ASN ASN A . n A 1 14 SER 14 11 11 SER SER A . n A 1 15 TYR 15 12 12 TYR TYR A . n A 1 16 GLU 16 13 13 GLU GLU A . n A 1 17 LEU 17 14 14 LEU LEU A . n A 1 18 GLY 18 15 15 GLY GLY A . n A 1 19 SER 19 16 16 SER SER A . n A 1 20 LEU 20 17 17 LEU LEU A . n A 1 21 GLN 21 18 18 GLN GLN A . n A 1 22 ALA 22 19 19 ALA ALA A . n A 1 23 GLU 23 20 20 GLU GLU A . n A 1 24 ASP 24 21 21 ASP ASP A . n A 1 25 GLU 25 22 22 GLU GLU A . n A 1 26 ALA 26 23 23 ALA ALA A . n A 1 27 ASN 27 24 24 ASN ASN A . n A 1 28 GLN 28 25 25 GLN GLN A . n A 1 29 PRO 29 26 26 PRO PRO A . n A 1 30 PHE 30 27 27 PHE PHE A . n A 1 31 CYS 31 28 28 CYS CYS A . n A 1 32 ALA 32 29 29 ALA ALA A . n A 1 33 VAL 33 30 30 VAL VAL A . n A 1 34 LYS 34 31 31 LYS LYS A . n A 1 35 MET 35 32 32 MET MET A . n A 1 36 LYS 36 33 33 LYS LYS A . n A 1 37 GLU 37 34 34 GLU GLU A . n A 1 38 ALA 38 35 35 ALA ALA A . n A 1 39 LEU 39 36 36 LEU LEU A . n A 1 40 SER 40 37 37 SER SER A . n A 1 41 THR 41 38 38 THR THR A . n A 1 42 GLU 42 39 39 GLU GLU A . n A 1 43 ARG 43 40 40 ARG ARG A . n A 1 44 GLY 44 41 41 GLY GLY A . n A 1 45 LYS 45 42 42 LYS LYS A . n A 1 46 THR 46 43 43 THR THR A . n A 1 47 LEU 47 44 44 LEU LEU A . n A 1 48 VAL 48 45 45 VAL VAL A . n A 1 49 GLN 49 46 46 GLN GLN A . n A 1 50 LYS 50 47 47 LYS LYS A . n A 1 51 LYS 51 48 48 LYS LYS A . n A 1 52 PRO 52 49 49 PRO PRO A . n A 1 53 THR 53 50 50 THR THR A . n A 1 54 MET 54 51 51 MET MET A . n A 1 55 TYR 55 52 52 TYR TYR A . n A 1 56 PRO 56 53 53 PRO PRO A . n A 1 57 GLU 57 54 54 GLU GLU A . n A 1 58 TRP 58 55 55 TRP TRP A . n A 1 59 LYS 59 56 56 LYS LYS A . n A 1 60 SER 60 57 57 SER SER A . n A 1 61 THR 61 58 58 THR THR A . n A 1 62 PHE 62 59 59 PHE PHE A . n A 1 63 ASP 63 60 60 ASP ASP A . n A 1 64 ALA 64 61 61 ALA ALA A . n A 1 65 HIS 65 62 62 HIS HIS A . n A 1 66 ILE 66 63 63 ILE ILE A . n A 1 67 TYR 67 64 64 TYR TYR A . n A 1 68 GLU 68 65 65 GLU GLU A . n A 1 69 GLY 69 66 66 GLY GLY A . n A 1 70 ARG 70 67 67 ARG ARG A . n A 1 71 VAL 71 68 68 VAL VAL A . n A 1 72 ILE 72 69 69 ILE ILE A . n A 1 73 GLN 73 70 70 GLN GLN A . n A 1 74 ILE 74 71 71 ILE ILE A . n A 1 75 VAL 75 72 72 VAL VAL A . n A 1 76 LEU 76 73 73 LEU LEU A . n A 1 77 MET 77 74 74 MET MET A . n A 1 78 ARG 78 75 75 ARG ARG A . n A 1 79 ALA 79 76 76 ALA ALA A . n A 1 80 ALA 80 77 77 ALA ALA A . n A 1 81 GLU 81 78 78 GLU GLU A . n A 1 82 GLU 82 79 79 GLU GLU A . n A 1 83 PRO 83 80 80 PRO PRO A . n A 1 84 VAL 84 81 81 VAL VAL A . n A 1 85 SER 85 82 82 SER SER A . n A 1 86 GLU 86 83 83 GLU GLU A . n A 1 87 VAL 87 84 84 VAL VAL A . n A 1 88 THR 88 85 85 THR THR A . n A 1 89 VAL 89 86 86 VAL VAL A . n A 1 90 GLY 90 87 87 GLY GLY A . n A 1 91 VAL 91 88 88 VAL VAL A . n A 1 92 SER 92 89 89 SER SER A . n A 1 93 VAL 93 90 90 VAL VAL A . n A 1 94 LEU 94 91 91 LEU LEU A . n A 1 95 ALA 95 92 92 ALA ALA A . n A 1 96 GLU 96 93 93 GLU GLU A . n A 1 97 ARG 97 94 94 ARG ARG A . n A 1 98 CYS 98 95 95 CYS CYS A . n A 1 99 LYS 99 96 96 LYS LYS A . n A 1 100 LYS 100 97 97 LYS LYS A . n A 1 101 ASN 101 98 98 ASN ASN A . n A 1 102 ASN 102 99 99 ASN ASN A . n A 1 103 GLY 103 100 100 GLY GLY A . n A 1 104 LYS 104 101 101 LYS LYS A . n A 1 105 ALA 105 102 102 ALA ALA A . n A 1 106 GLU 106 103 103 GLU GLU A . n A 1 107 PHE 107 104 104 PHE PHE A . n A 1 108 TRP 108 105 105 TRP TRP A . n A 1 109 LEU 109 106 106 LEU LEU A . n A 1 110 ASP 110 107 107 ASP ASP A . n A 1 111 LEU 111 108 108 LEU LEU A . n A 1 112 GLN 112 109 109 GLN GLN A . n A 1 113 PRO 113 110 110 PRO PRO A . n A 1 114 GLN 114 111 111 GLN GLN A . n A 1 115 ALA 115 112 112 ALA ALA A . n A 1 116 LYS 116 113 113 LYS LYS A . n A 1 117 VAL 117 114 114 VAL VAL A . n A 1 118 LEU 118 115 115 LEU LEU A . n A 1 119 MET 119 116 116 MET MET A . n A 1 120 SER 120 117 117 SER SER A . n A 1 121 VAL 121 118 118 VAL VAL A . n A 1 122 GLN 122 119 119 GLN GLN A . n A 1 123 TYR 123 120 120 TYR TYR A . n A 1 124 PHE 124 121 121 PHE PHE A . n A 1 125 LEU 125 122 122 LEU LEU A . n A 1 126 GLU 126 123 123 GLU GLU A . n B 2 1 MET 1 1 1 MET MET B . n B 2 2 ALA 2 2 2 ALA ALA B . n B 2 3 LEU 3 3 3 LEU LEU B . n B 2 4 TYR 4 4 4 TYR TYR B . n B 2 5 SER 5 5 5 SER SER B . n B 2 6 ILE 6 6 6 ILE ILE B . n B 2 7 PTR 7 7 7 PTR PTR B . n B 2 8 GLN 8 8 8 GLN GLN B . n B 2 9 PRO 9 9 9 PRO PRO B . n B 2 10 TYR 10 10 10 TYR TYR B . n B 2 11 VAL 11 11 11 VAL VAL B . n B 2 12 PHE 12 12 12 PHE PHE B . n B 2 13 ALA 13 13 13 ALA ALA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ACY 1 2001 2001 ACY ACY A . D 4 HOH 1 2002 2 HOH TIP A . D 4 HOH 2 2003 5 HOH TIP A . D 4 HOH 3 2004 6 HOH TIP A . D 4 HOH 4 2005 8 HOH TIP A . D 4 HOH 5 2006 9 HOH TIP A . D 4 HOH 6 2007 10 HOH TIP A . D 4 HOH 7 2008 11 HOH TIP A . D 4 HOH 8 2009 12 HOH TIP A . D 4 HOH 9 2010 13 HOH TIP A . D 4 HOH 10 2011 14 HOH TIP A . D 4 HOH 11 2012 15 HOH TIP A . D 4 HOH 12 2013 16 HOH TIP A . D 4 HOH 13 2014 17 HOH TIP A . D 4 HOH 14 2015 18 HOH TIP A . D 4 HOH 15 2016 19 HOH TIP A . D 4 HOH 16 2017 21 HOH TIP A . D 4 HOH 17 2018 22 HOH TIP A . D 4 HOH 18 2019 23 HOH TIP A . D 4 HOH 19 2020 24 HOH TIP A . D 4 HOH 20 2021 25 HOH TIP A . D 4 HOH 21 2022 26 HOH TIP A . D 4 HOH 22 2023 27 HOH TIP A . D 4 HOH 23 2024 28 HOH TIP A . D 4 HOH 24 2025 30 HOH TIP A . D 4 HOH 25 2026 31 HOH TIP A . D 4 HOH 26 2027 32 HOH TIP A . D 4 HOH 27 2028 33 HOH TIP A . D 4 HOH 28 2029 34 HOH TIP A . D 4 HOH 29 2030 35 HOH TIP A . D 4 HOH 30 2031 36 HOH TIP A . D 4 HOH 31 2032 37 HOH TIP A . D 4 HOH 32 2033 39 HOH TIP A . D 4 HOH 33 2034 41 HOH TIP A . D 4 HOH 34 2035 42 HOH TIP A . D 4 HOH 35 2036 44 HOH TIP A . D 4 HOH 36 2037 45 HOH TIP A . D 4 HOH 37 2038 47 HOH TIP A . D 4 HOH 38 2039 48 HOH TIP A . D 4 HOH 39 2040 49 HOH TIP A . D 4 HOH 40 2041 50 HOH TIP A . D 4 HOH 41 2042 51 HOH TIP A . D 4 HOH 42 2043 52 HOH TIP A . D 4 HOH 43 2044 53 HOH TIP A . D 4 HOH 44 2045 54 HOH TIP A . D 4 HOH 45 2046 55 HOH TIP A . D 4 HOH 46 2047 56 HOH TIP A . D 4 HOH 47 2048 57 HOH TIP A . D 4 HOH 48 2049 58 HOH TIP A . D 4 HOH 49 2050 59 HOH TIP A . D 4 HOH 50 2051 60 HOH TIP A . D 4 HOH 51 2052 61 HOH TIP A . D 4 HOH 52 2053 62 HOH TIP A . D 4 HOH 53 2054 64 HOH TIP A . D 4 HOH 54 2055 65 HOH TIP A . D 4 HOH 55 2056 66 HOH TIP A . D 4 HOH 56 2057 67 HOH TIP A . D 4 HOH 57 2058 68 HOH TIP A . D 4 HOH 58 2059 70 HOH TIP A . D 4 HOH 59 2060 71 HOH TIP A . D 4 HOH 60 2061 72 HOH TIP A . D 4 HOH 61 2062 73 HOH TIP A . D 4 HOH 62 2063 74 HOH TIP A . D 4 HOH 63 2064 76 HOH TIP A . D 4 HOH 64 2065 77 HOH TIP A . D 4 HOH 65 2066 78 HOH TIP A . D 4 HOH 66 2067 79 HOH TIP A . D 4 HOH 67 2068 80 HOH TIP A . D 4 HOH 68 2069 81 HOH TIP A . D 4 HOH 69 2070 82 HOH TIP A . D 4 HOH 70 2071 83 HOH TIP A . D 4 HOH 71 2072 84 HOH TIP A . D 4 HOH 72 2073 85 HOH TIP A . D 4 HOH 73 2074 87 HOH TIP A . D 4 HOH 74 2075 88 HOH TIP A . D 4 HOH 75 2076 89 HOH TIP A . D 4 HOH 76 2077 90 HOH TIP A . D 4 HOH 77 2078 91 HOH TIP A . D 4 HOH 78 2079 92 HOH TIP A . D 4 HOH 79 2080 93 HOH TIP A . D 4 HOH 80 2081 94 HOH TIP A . D 4 HOH 81 2082 95 HOH TIP A . D 4 HOH 82 2083 96 HOH TIP A . D 4 HOH 83 2084 98 HOH TIP A . D 4 HOH 84 2085 100 HOH TIP A . D 4 HOH 85 2086 101 HOH TIP A . D 4 HOH 86 2087 102 HOH TIP A . D 4 HOH 87 2088 103 HOH TIP A . D 4 HOH 88 2089 104 HOH TIP A . D 4 HOH 89 2090 105 HOH TIP A . D 4 HOH 90 2091 107 HOH TIP A . D 4 HOH 91 2092 108 HOH TIP A . D 4 HOH 92 2093 109 HOH TIP A . D 4 HOH 93 2094 110 HOH TIP A . D 4 HOH 94 2095 111 HOH TIP A . D 4 HOH 95 2096 112 HOH TIP A . D 4 HOH 96 2097 113 HOH TIP A . D 4 HOH 97 2098 114 HOH TIP A . D 4 HOH 98 2099 115 HOH TIP A . D 4 HOH 99 2100 116 HOH TIP A . D 4 HOH 100 2101 117 HOH TIP A . D 4 HOH 101 2102 118 HOH TIP A . D 4 HOH 102 2103 119 HOH TIP A . D 4 HOH 103 2104 120 HOH TIP A . D 4 HOH 104 2105 121 HOH TIP A . D 4 HOH 105 2106 122 HOH TIP A . D 4 HOH 106 2107 123 HOH TIP A . D 4 HOH 107 2108 124 HOH TIP A . D 4 HOH 108 2109 125 HOH TIP A . D 4 HOH 109 2110 126 HOH TIP A . D 4 HOH 110 2111 127 HOH TIP A . D 4 HOH 111 2112 128 HOH TIP A . D 4 HOH 112 2113 129 HOH TIP A . D 4 HOH 113 2114 130 HOH TIP A . D 4 HOH 114 2115 132 HOH TIP A . D 4 HOH 115 2116 133 HOH TIP A . D 4 HOH 116 2117 134 HOH TIP A . D 4 HOH 117 2118 135 HOH TIP A . D 4 HOH 118 2119 136 HOH TIP A . D 4 HOH 119 2120 137 HOH TIP A . D 4 HOH 120 2121 138 HOH TIP A . D 4 HOH 121 2122 139 HOH TIP A . D 4 HOH 122 2123 140 HOH TIP A . D 4 HOH 123 2124 141 HOH TIP A . D 4 HOH 124 2125 142 HOH TIP A . D 4 HOH 125 2126 143 HOH TIP A . D 4 HOH 126 2127 144 HOH TIP A . D 4 HOH 127 2128 145 HOH TIP A . D 4 HOH 128 2129 146 HOH TIP A . D 4 HOH 129 2130 147 HOH TIP A . D 4 HOH 130 2131 148 HOH TIP A . D 4 HOH 131 2132 149 HOH TIP A . D 4 HOH 132 2133 150 HOH TIP A . D 4 HOH 133 2134 151 HOH TIP A . D 4 HOH 134 2135 152 HOH TIP A . D 4 HOH 135 2136 153 HOH TIP A . D 4 HOH 136 2137 154 HOH TIP A . D 4 HOH 137 2138 155 HOH TIP A . D 4 HOH 138 2139 156 HOH TIP A . D 4 HOH 139 2140 157 HOH TIP A . D 4 HOH 140 2141 158 HOH TIP A . D 4 HOH 141 2142 159 HOH TIP A . D 4 HOH 142 2143 160 HOH TIP A . D 4 HOH 143 2144 161 HOH TIP A . D 4 HOH 144 2145 162 HOH TIP A . D 4 HOH 145 2146 163 HOH TIP A . D 4 HOH 146 2147 164 HOH TIP A . D 4 HOH 147 2148 165 HOH TIP A . D 4 HOH 148 2149 166 HOH TIP A . D 4 HOH 149 2150 167 HOH TIP A . D 4 HOH 150 2151 168 HOH TIP A . D 4 HOH 151 2152 169 HOH TIP A . D 4 HOH 152 2153 170 HOH TIP A . D 4 HOH 153 2154 171 HOH TIP A . D 4 HOH 154 2155 173 HOH TIP A . D 4 HOH 155 2156 174 HOH TIP A . D 4 HOH 156 2157 175 HOH TIP A . D 4 HOH 157 2158 176 HOH TIP A . D 4 HOH 158 2159 177 HOH TIP A . D 4 HOH 159 2160 178 HOH TIP A . D 4 HOH 160 2161 179 HOH TIP A . D 4 HOH 161 2162 180 HOH TIP A . D 4 HOH 162 2163 181 HOH TIP A . D 4 HOH 163 2164 182 HOH TIP A . D 4 HOH 164 2165 183 HOH TIP A . D 4 HOH 165 2166 186 HOH TIP A . D 4 HOH 166 2167 187 HOH TIP A . D 4 HOH 167 2168 188 HOH TIP A . D 4 HOH 168 2169 189 HOH TIP A . D 4 HOH 169 2170 190 HOH TIP A . D 4 HOH 170 2171 191 HOH TIP A . D 4 HOH 171 2172 192 HOH TIP A . D 4 HOH 172 2173 193 HOH TIP A . D 4 HOH 173 2174 194 HOH TIP A . D 4 HOH 174 2175 196 HOH TIP A . D 4 HOH 175 2176 198 HOH TIP A . D 4 HOH 176 2177 200 HOH TIP A . D 4 HOH 177 2178 201 HOH TIP A . D 4 HOH 178 2179 202 HOH TIP A . D 4 HOH 179 2180 203 HOH TIP A . D 4 HOH 180 2181 204 HOH TIP A . D 4 HOH 181 2182 205 HOH TIP A . D 4 HOH 182 2183 206 HOH TIP A . D 4 HOH 183 2184 209 HOH TIP A . D 4 HOH 184 2185 210 HOH TIP A . D 4 HOH 185 2186 211 HOH TIP A . D 4 HOH 186 2187 212 HOH TIP A . D 4 HOH 187 2188 214 HOH TIP A . D 4 HOH 188 2189 215 HOH TIP A . D 4 HOH 189 2190 217 HOH TIP A . D 4 HOH 190 2191 218 HOH TIP A . D 4 HOH 191 2192 219 HOH TIP A . E 4 HOH 1 14 1 HOH TIP B . E 4 HOH 2 15 3 HOH TIP B . E 4 HOH 3 16 4 HOH TIP B . E 4 HOH 4 17 7 HOH TIP B . E 4 HOH 5 18 20 HOH TIP B . E 4 HOH 6 19 29 HOH TIP B . E 4 HOH 7 20 38 HOH TIP B . E 4 HOH 8 21 40 HOH TIP B . E 4 HOH 9 22 43 HOH TIP B . E 4 HOH 10 23 46 HOH TIP B . E 4 HOH 11 24 63 HOH TIP B . E 4 HOH 12 25 69 HOH TIP B . E 4 HOH 13 26 75 HOH TIP B . E 4 HOH 14 27 86 HOH TIP B . E 4 HOH 15 28 97 HOH TIP B . E 4 HOH 16 29 99 HOH TIP B . E 4 HOH 17 30 106 HOH TIP B . E 4 HOH 18 31 131 HOH TIP B . E 4 HOH 19 32 172 HOH TIP B . E 4 HOH 20 33 184 HOH TIP B . E 4 HOH 21 34 185 HOH TIP B . E 4 HOH 22 35 195 HOH TIP B . E 4 HOH 23 36 197 HOH TIP B . E 4 HOH 24 37 199 HOH TIP B . E 4 HOH 25 38 207 HOH TIP B . E 4 HOH 26 39 208 HOH TIP B . E 4 HOH 27 40 213 HOH TIP B . E 4 HOH 28 41 216 HOH TIP B . E 4 HOH 29 42 220 HOH TIP B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _cell.entry_id 1YRK _cell.length_a 37.272 _cell.length_b 41.856 _cell.length_c 88.463 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YRK _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1YRK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.57 _exptl_crystal.density_percent_sol 52.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'PEG4K, PEG200, potassium acetate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-08-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE F1' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline F1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1YRK _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100 _reflns.d_resolution_high 1.7 _reflns.number_obs 15254 _reflns.number_all 15581 _reflns.percent_possible_obs 97.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 9.5 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1YRK _refine.ls_number_reflns_obs 15254 _refine.ls_number_reflns_all 15254 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 276148.03 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.35 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 96.2 _refine.ls_R_factor_obs 0.176 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.176 _refine.ls_R_factor_R_free 0.221 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.8 _refine.ls_number_reflns_R_free 1043 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 12.9 _refine.aniso_B[1][1] 0.10 _refine.aniso_B[2][2] 0.60 _refine.aniso_B[3][3] -0.70 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.364346 _refine.solvent_model_param_bsol 41.0499 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1YRK _refine_analyze.Luzzati_coordinate_error_obs 0.16 _refine_analyze.Luzzati_sigma_a_obs 0.05 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.21 _refine_analyze.Luzzati_sigma_a_free 0.09 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1117 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 224 _refine_hist.number_atoms_total 1341 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 34.35 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.5 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.95 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.24 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.65 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.89 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.79 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.81 _refine_ls_shell.number_reflns_R_work 2257 _refine_ls_shell.R_factor_R_work 0.183 _refine_ls_shell.percent_reflns_obs 92.4 _refine_ls_shell.R_factor_R_free 0.253 _refine_ls_shell.R_factor_R_free_error 0.023 _refine_ls_shell.percent_reflns_R_free 5.1 _refine_ls_shell.number_reflns_R_free 121 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PRO.PARAM PRO.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' 3 ACY.PARAM ? 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1YRK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YRK _struct.title 'The C2 Domain of PKC<delta> is a new Phospho-Tyrosine Binding Domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YRK _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'C2 domain, PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP KPCD_HUMAN Q05655 1 ;MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAAEEP VSEVTVGVSVLAERCKKNNGKAEFWLDLQPQAKVLMSVQYFLE ; 1 ? 2 PDB 1YRK 1YRK 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1YRK A 4 ? 126 ? Q05655 1 ? 123 ? 1 123 2 2 1YRK B 1 ? 13 ? 1YRK 1 ? 13 ? 1 13 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YRK GLY A 1 ? UNP Q05655 ? ? 'cloning artifact' -2 1 1 1YRK SER A 2 ? UNP Q05655 ? ? 'cloning artifact' -1 2 1 1YRK HIS A 3 ? UNP Q05655 ? ? 'cloning artifact' 0 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1300 ? 1 MORE -11 ? 1 'SSA (A^2)' 8590 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'The protein is the monomeric form.' _struct_biol.pdbx_parent_biol_id ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id VAL _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 91 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LYS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 100 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id VAL _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 88 _struct_conf.end_auth_comp_id LYS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 97 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B ILE 6 C ? ? ? 1_555 B PTR 7 N ? ? B ILE 6 B PTR 7 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale2 covale both ? B PTR 7 C ? ? ? 1_555 B GLN 8 N ? ? B PTR 7 B GLN 8 1_555 ? ? ? ? ? ? ? 1.342 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id PTR _pdbx_modification_feature.label_asym_id B _pdbx_modification_feature.label_seq_id 7 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id . _pdbx_modification_feature.modified_residue_label_asym_id . _pdbx_modification_feature.modified_residue_label_seq_id . _pdbx_modification_feature.modified_residue_label_alt_id . _pdbx_modification_feature.auth_comp_id PTR _pdbx_modification_feature.auth_asym_id B _pdbx_modification_feature.auth_seq_id 7 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id . _pdbx_modification_feature.modified_residue_auth_asym_id . _pdbx_modification_feature.modified_residue_auth_seq_id . _pdbx_modification_feature.modified_residue_PDB_ins_code . _pdbx_modification_feature.modified_residue_symmetry . _pdbx_modification_feature.comp_id_linking_atom . _pdbx_modification_feature.modified_residue_id_linking_atom . _pdbx_modification_feature.modified_residue_id TYR _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id PTR _pdbx_modification_feature.type Phosphorylation _pdbx_modification_feature.category 'Named protein modification' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLN _struct_mon_prot_cis.label_seq_id 112 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLN _struct_mon_prot_cis.auth_seq_id 109 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 113 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 110 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.32 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 61 ? HIS A 65 ? THR A 58 HIS A 62 A 2 MET A 4 ? GLU A 16 ? MET A 1 GLU A 13 A 3 LYS A 116 ? GLU A 126 ? LYS A 113 GLU A 123 A 4 LYS A 104 ? ASP A 110 ? LYS A 101 ASP A 107 B 1 GLY A 44 ? VAL A 48 ? GLY A 41 VAL A 45 B 2 PHE A 30 ? THR A 41 ? PHE A 27 THR A 38 B 3 VAL A 71 ? ALA A 79 ? VAL A 68 ALA A 76 B 4 GLU A 82 ? GLY A 90 ? GLU A 79 GLY A 87 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 62 ? O PHE A 59 N ILE A 10 ? N ILE A 7 A 2 3 N PHE A 7 ? N PHE A 4 O PHE A 124 ? O PHE A 121 A 3 4 O VAL A 121 ? O VAL A 118 N ALA A 105 ? N ALA A 102 B 1 2 O VAL A 48 ? O VAL A 45 N GLU A 37 ? N GLU A 34 B 2 3 N PHE A 30 ? N PHE A 27 O MET A 77 ? O MET A 74 B 3 4 N LEU A 76 ? N LEU A 73 O VAL A 84 ? O VAL A 81 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ACY _struct_site.pdbx_auth_seq_id 2001 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE ACY A 2001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASN A 101 ? ASN A 98 . ? 1_555 ? 2 AC1 5 ALA A 105 ? ALA A 102 . ? 1_555 ? 3 AC1 5 GLU A 106 ? GLU A 103 . ? 1_555 ? 4 AC1 5 HOH D . ? HOH A 2066 . ? 3_645 ? 5 AC1 5 HOH D . ? HOH A 2124 . ? 1_555 ? # _pdbx_entry_details.entry_id 1YRK _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 56 ? ? 74.24 -8.42 2 1 ALA A 112 ? ? 78.59 166.69 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id PTR _pdbx_struct_mod_residue.label_seq_id 7 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id PTR _pdbx_struct_mod_residue.auth_seq_id 7 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id TYR _pdbx_struct_mod_residue.details O-PHOSPHOTYROSINE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACY C C N N 1 ACY O O N N 2 ACY OXT O N N 3 ACY CH3 C N N 4 ACY HXT H N N 5 ACY H1 H N N 6 ACY H2 H N N 7 ACY H3 H N N 8 ALA N N N N 9 ALA CA C N S 10 ALA C C N N 11 ALA O O N N 12 ALA CB C N N 13 ALA OXT O N N 14 ALA H H N N 15 ALA H2 H N N 16 ALA HA H N N 17 ALA HB1 H N N 18 ALA HB2 H N N 19 ALA HB3 H N N 20 ALA HXT H N N 21 ARG N N N N 22 ARG CA C N S 23 ARG C C N N 24 ARG O O N N 25 ARG CB C N N 26 ARG CG C N N 27 ARG CD C N N 28 ARG NE N N N 29 ARG CZ C N N 30 ARG NH1 N N N 31 ARG NH2 N N N 32 ARG OXT O N N 33 ARG H H N N 34 ARG H2 H N N 35 ARG HA H N N 36 ARG HB2 H N N 37 ARG HB3 H N N 38 ARG HG2 H N N 39 ARG HG3 H N N 40 ARG HD2 H N N 41 ARG HD3 H N N 42 ARG HE H N N 43 ARG HH11 H N N 44 ARG HH12 H N N 45 ARG HH21 H N N 46 ARG HH22 H N N 47 ARG HXT H N N 48 ASN N N N N 49 ASN CA C N S 50 ASN C C N N 51 ASN O O N N 52 ASN CB C N N 53 ASN CG C N N 54 ASN OD1 O N N 55 ASN ND2 N N N 56 ASN OXT O N N 57 ASN H H N N 58 ASN H2 H N N 59 ASN HA H N N 60 ASN HB2 H N N 61 ASN HB3 H N N 62 ASN HD21 H N N 63 ASN HD22 H N N 64 ASN HXT H N N 65 ASP N N N N 66 ASP CA C N S 67 ASP C C N N 68 ASP O O N N 69 ASP CB C N N 70 ASP CG C N N 71 ASP OD1 O N N 72 ASP OD2 O N N 73 ASP OXT O N N 74 ASP H H N N 75 ASP H2 H N N 76 ASP HA H N N 77 ASP HB2 H N N 78 ASP HB3 H N N 79 ASP HD2 H N N 80 ASP HXT H N N 81 CYS N N N N 82 CYS CA C N R 83 CYS C C N N 84 CYS O O N N 85 CYS CB C N N 86 CYS SG S N N 87 CYS OXT O N N 88 CYS H H N N 89 CYS H2 H N N 90 CYS HA H N N 91 CYS HB2 H N N 92 CYS HB3 H N N 93 CYS HG H N N 94 CYS HXT H N N 95 GLN N N N N 96 GLN CA C N S 97 GLN C C N N 98 GLN O O N N 99 GLN CB C N N 100 GLN CG C N N 101 GLN CD C N N 102 GLN OE1 O N N 103 GLN NE2 N N N 104 GLN OXT O N N 105 GLN H H N N 106 GLN H2 H N N 107 GLN HA H N N 108 GLN HB2 H N N 109 GLN HB3 H N N 110 GLN HG2 H N N 111 GLN HG3 H N N 112 GLN HE21 H N N 113 GLN HE22 H N N 114 GLN HXT H N N 115 GLU N N N N 116 GLU CA C N S 117 GLU C C N N 118 GLU O O N N 119 GLU CB C N N 120 GLU CG C N N 121 GLU CD C N N 122 GLU OE1 O N N 123 GLU OE2 O N N 124 GLU OXT O N N 125 GLU H H N N 126 GLU H2 H N N 127 GLU HA H N N 128 GLU HB2 H N N 129 GLU HB3 H N N 130 GLU HG2 H N N 131 GLU HG3 H N N 132 GLU HE2 H N N 133 GLU HXT H N N 134 GLY N N N N 135 GLY CA C N N 136 GLY C C N N 137 GLY O O N N 138 GLY OXT O N N 139 GLY H H N N 140 GLY H2 H N N 141 GLY HA2 H N N 142 GLY HA3 H N N 143 GLY HXT H N N 144 HIS N N N N 145 HIS CA C N S 146 HIS C C N N 147 HIS O O N N 148 HIS CB C N N 149 HIS CG C Y N 150 HIS ND1 N Y N 151 HIS CD2 C Y N 152 HIS CE1 C Y N 153 HIS NE2 N Y N 154 HIS OXT O N N 155 HIS H H N N 156 HIS H2 H N N 157 HIS HA H N N 158 HIS HB2 H N N 159 HIS HB3 H N N 160 HIS HD1 H N N 161 HIS HD2 H N N 162 HIS HE1 H N N 163 HIS HE2 H N N 164 HIS HXT H N N 165 HOH O O N N 166 HOH H1 H N N 167 HOH H2 H N N 168 ILE N N N N 169 ILE CA C N S 170 ILE C C N N 171 ILE O O N N 172 ILE CB C N S 173 ILE CG1 C N N 174 ILE CG2 C N N 175 ILE CD1 C N N 176 ILE OXT O N N 177 ILE H H N N 178 ILE H2 H N N 179 ILE HA H N N 180 ILE HB H N N 181 ILE HG12 H N N 182 ILE HG13 H N N 183 ILE HG21 H N N 184 ILE HG22 H N N 185 ILE HG23 H N N 186 ILE HD11 H N N 187 ILE HD12 H N N 188 ILE HD13 H N N 189 ILE HXT H N N 190 LEU N N N N 191 LEU CA C N S 192 LEU C C N N 193 LEU O O N N 194 LEU CB C N N 195 LEU CG C N N 196 LEU CD1 C N N 197 LEU CD2 C N N 198 LEU OXT O N N 199 LEU H H N N 200 LEU H2 H N N 201 LEU HA H N N 202 LEU HB2 H N N 203 LEU HB3 H N N 204 LEU HG H N N 205 LEU HD11 H N N 206 LEU HD12 H N N 207 LEU HD13 H N N 208 LEU HD21 H N N 209 LEU HD22 H N N 210 LEU HD23 H N N 211 LEU HXT H N N 212 LYS N N N N 213 LYS CA C N S 214 LYS C C N N 215 LYS O O N N 216 LYS CB C N N 217 LYS CG C N N 218 LYS CD C N N 219 LYS CE C N N 220 LYS NZ N N N 221 LYS OXT O N N 222 LYS H H N N 223 LYS H2 H N N 224 LYS HA H N N 225 LYS HB2 H N N 226 LYS HB3 H N N 227 LYS HG2 H N N 228 LYS HG3 H N N 229 LYS HD2 H N N 230 LYS HD3 H N N 231 LYS HE2 H N N 232 LYS HE3 H N N 233 LYS HZ1 H N N 234 LYS HZ2 H N N 235 LYS HZ3 H N N 236 LYS HXT H N N 237 MET N N N N 238 MET CA C N S 239 MET C C N N 240 MET O O N N 241 MET CB C N N 242 MET CG C N N 243 MET SD S N N 244 MET CE C N N 245 MET OXT O N N 246 MET H H N N 247 MET H2 H N N 248 MET HA H N N 249 MET HB2 H N N 250 MET HB3 H N N 251 MET HG2 H N N 252 MET HG3 H N N 253 MET HE1 H N N 254 MET HE2 H N N 255 MET HE3 H N N 256 MET HXT H N N 257 PHE N N N N 258 PHE CA C N S 259 PHE C C N N 260 PHE O O N N 261 PHE CB C N N 262 PHE CG C Y N 263 PHE CD1 C Y N 264 PHE CD2 C Y N 265 PHE CE1 C Y N 266 PHE CE2 C Y N 267 PHE CZ C Y N 268 PHE OXT O N N 269 PHE H H N N 270 PHE H2 H N N 271 PHE HA H N N 272 PHE HB2 H N N 273 PHE HB3 H N N 274 PHE HD1 H N N 275 PHE HD2 H N N 276 PHE HE1 H N N 277 PHE HE2 H N N 278 PHE HZ H N N 279 PHE HXT H N N 280 PRO N N N N 281 PRO CA C N S 282 PRO C C N N 283 PRO O O N N 284 PRO CB C N N 285 PRO CG C N N 286 PRO CD C N N 287 PRO OXT O N N 288 PRO H H N N 289 PRO HA H N N 290 PRO HB2 H N N 291 PRO HB3 H N N 292 PRO HG2 H N N 293 PRO HG3 H N N 294 PRO HD2 H N N 295 PRO HD3 H N N 296 PRO HXT H N N 297 PTR N N N N 298 PTR CA C N S 299 PTR C C N N 300 PTR O O N N 301 PTR OXT O N N 302 PTR CB C N N 303 PTR CG C Y N 304 PTR CD1 C Y N 305 PTR CD2 C Y N 306 PTR CE1 C Y N 307 PTR CE2 C Y N 308 PTR CZ C Y N 309 PTR OH O N N 310 PTR P P N N 311 PTR O1P O N N 312 PTR O2P O N N 313 PTR O3P O N N 314 PTR H H N N 315 PTR H2 H N N 316 PTR HA H N N 317 PTR HXT H N N 318 PTR HB2 H N N 319 PTR HB3 H N N 320 PTR HD1 H N N 321 PTR HD2 H N N 322 PTR HE1 H N N 323 PTR HE2 H N N 324 PTR HO2P H N N 325 PTR HO3P H N N 326 SER N N N N 327 SER CA C N S 328 SER C C N N 329 SER O O N N 330 SER CB C N N 331 SER OG O N N 332 SER OXT O N N 333 SER H H N N 334 SER H2 H N N 335 SER HA H N N 336 SER HB2 H N N 337 SER HB3 H N N 338 SER HG H N N 339 SER HXT H N N 340 THR N N N N 341 THR CA C N S 342 THR C C N N 343 THR O O N N 344 THR CB C N R 345 THR OG1 O N N 346 THR CG2 C N N 347 THR OXT O N N 348 THR H H N N 349 THR H2 H N N 350 THR HA H N N 351 THR HB H N N 352 THR HG1 H N N 353 THR HG21 H N N 354 THR HG22 H N N 355 THR HG23 H N N 356 THR HXT H N N 357 TRP N N N N 358 TRP CA C N S 359 TRP C C N N 360 TRP O O N N 361 TRP CB C N N 362 TRP CG C Y N 363 TRP CD1 C Y N 364 TRP CD2 C Y N 365 TRP NE1 N Y N 366 TRP CE2 C Y N 367 TRP CE3 C Y N 368 TRP CZ2 C Y N 369 TRP CZ3 C Y N 370 TRP CH2 C Y N 371 TRP OXT O N N 372 TRP H H N N 373 TRP H2 H N N 374 TRP HA H N N 375 TRP HB2 H N N 376 TRP HB3 H N N 377 TRP HD1 H N N 378 TRP HE1 H N N 379 TRP HE3 H N N 380 TRP HZ2 H N N 381 TRP HZ3 H N N 382 TRP HH2 H N N 383 TRP HXT H N N 384 TYR N N N N 385 TYR CA C N S 386 TYR C C N N 387 TYR O O N N 388 TYR CB C N N 389 TYR CG C Y N 390 TYR CD1 C Y N 391 TYR CD2 C Y N 392 TYR CE1 C Y N 393 TYR CE2 C Y N 394 TYR CZ C Y N 395 TYR OH O N N 396 TYR OXT O N N 397 TYR H H N N 398 TYR H2 H N N 399 TYR HA H N N 400 TYR HB2 H N N 401 TYR HB3 H N N 402 TYR HD1 H N N 403 TYR HD2 H N N 404 TYR HE1 H N N 405 TYR HE2 H N N 406 TYR HH H N N 407 TYR HXT H N N 408 VAL N N N N 409 VAL CA C N S 410 VAL C C N N 411 VAL O O N N 412 VAL CB C N N 413 VAL CG1 C N N 414 VAL CG2 C N N 415 VAL OXT O N N 416 VAL H H N N 417 VAL H2 H N N 418 VAL HA H N N 419 VAL HB H N N 420 VAL HG11 H N N 421 VAL HG12 H N N 422 VAL HG13 H N N 423 VAL HG21 H N N 424 VAL HG22 H N N 425 VAL HG23 H N N 426 VAL HXT H N N 427 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACY C O doub N N 1 ACY C OXT sing N N 2 ACY C CH3 sing N N 3 ACY OXT HXT sing N N 4 ACY CH3 H1 sing N N 5 ACY CH3 H2 sing N N 6 ACY CH3 H3 sing N N 7 ALA N CA sing N N 8 ALA N H sing N N 9 ALA N H2 sing N N 10 ALA CA C sing N N 11 ALA CA CB sing N N 12 ALA CA HA sing N N 13 ALA C O doub N N 14 ALA C OXT sing N N 15 ALA CB HB1 sing N N 16 ALA CB HB2 sing N N 17 ALA CB HB3 sing N N 18 ALA OXT HXT sing N N 19 ARG N CA sing N N 20 ARG N H sing N N 21 ARG N H2 sing N N 22 ARG CA C sing N N 23 ARG CA CB sing N N 24 ARG CA HA sing N N 25 ARG C O doub N N 26 ARG C OXT sing N N 27 ARG CB CG sing N N 28 ARG CB HB2 sing N N 29 ARG CB HB3 sing N N 30 ARG CG CD sing N N 31 ARG CG HG2 sing N N 32 ARG CG HG3 sing N N 33 ARG CD NE sing N N 34 ARG CD HD2 sing N N 35 ARG CD HD3 sing N N 36 ARG NE CZ sing N N 37 ARG NE HE sing N N 38 ARG CZ NH1 sing N N 39 ARG CZ NH2 doub N N 40 ARG NH1 HH11 sing N N 41 ARG NH1 HH12 sing N N 42 ARG NH2 HH21 sing N N 43 ARG NH2 HH22 sing N N 44 ARG OXT HXT sing N N 45 ASN N CA sing N N 46 ASN N H sing N N 47 ASN N H2 sing N N 48 ASN CA C sing N N 49 ASN CA CB sing N N 50 ASN CA HA sing N N 51 ASN C O doub N N 52 ASN C OXT sing N N 53 ASN CB CG sing N N 54 ASN CB HB2 sing N N 55 ASN CB HB3 sing N N 56 ASN CG OD1 doub N N 57 ASN CG ND2 sing N N 58 ASN ND2 HD21 sing N N 59 ASN ND2 HD22 sing N N 60 ASN OXT HXT sing N N 61 ASP N CA sing N N 62 ASP N H sing N N 63 ASP N H2 sing N N 64 ASP CA C sing N N 65 ASP CA CB sing N N 66 ASP CA HA sing N N 67 ASP C O doub N N 68 ASP C OXT sing N N 69 ASP CB CG sing N N 70 ASP CB HB2 sing N N 71 ASP CB HB3 sing N N 72 ASP CG OD1 doub N N 73 ASP CG OD2 sing N N 74 ASP OD2 HD2 sing N N 75 ASP OXT HXT sing N N 76 CYS N CA sing N N 77 CYS N H sing N N 78 CYS N H2 sing N N 79 CYS CA C sing N N 80 CYS CA CB sing N N 81 CYS CA HA sing N N 82 CYS C O doub N N 83 CYS C OXT sing N N 84 CYS CB SG sing N N 85 CYS CB HB2 sing N N 86 CYS CB HB3 sing N N 87 CYS SG HG sing N N 88 CYS OXT HXT sing N N 89 GLN N CA sing N N 90 GLN N H sing N N 91 GLN N H2 sing N N 92 GLN CA C sing N N 93 GLN CA CB sing N N 94 GLN CA HA sing N N 95 GLN C O doub N N 96 GLN C OXT sing N N 97 GLN CB CG sing N N 98 GLN CB HB2 sing N N 99 GLN CB HB3 sing N N 100 GLN CG CD sing N N 101 GLN CG HG2 sing N N 102 GLN CG HG3 sing N N 103 GLN CD OE1 doub N N 104 GLN CD NE2 sing N N 105 GLN NE2 HE21 sing N N 106 GLN NE2 HE22 sing N N 107 GLN OXT HXT sing N N 108 GLU N CA sing N N 109 GLU N H sing N N 110 GLU N H2 sing N N 111 GLU CA C sing N N 112 GLU CA CB sing N N 113 GLU CA HA sing N N 114 GLU C O doub N N 115 GLU C OXT sing N N 116 GLU CB CG sing N N 117 GLU CB HB2 sing N N 118 GLU CB HB3 sing N N 119 GLU CG CD sing N N 120 GLU CG HG2 sing N N 121 GLU CG HG3 sing N N 122 GLU CD OE1 doub N N 123 GLU CD OE2 sing N N 124 GLU OE2 HE2 sing N N 125 GLU OXT HXT sing N N 126 GLY N CA sing N N 127 GLY N H sing N N 128 GLY N H2 sing N N 129 GLY CA C sing N N 130 GLY CA HA2 sing N N 131 GLY CA HA3 sing N N 132 GLY C O doub N N 133 GLY C OXT sing N N 134 GLY OXT HXT sing N N 135 HIS N CA sing N N 136 HIS N H sing N N 137 HIS N H2 sing N N 138 HIS CA C sing N N 139 HIS CA CB sing N N 140 HIS CA HA sing N N 141 HIS C O doub N N 142 HIS C OXT sing N N 143 HIS CB CG sing N N 144 HIS CB HB2 sing N N 145 HIS CB HB3 sing N N 146 HIS CG ND1 sing Y N 147 HIS CG CD2 doub Y N 148 HIS ND1 CE1 doub Y N 149 HIS ND1 HD1 sing N N 150 HIS CD2 NE2 sing Y N 151 HIS CD2 HD2 sing N N 152 HIS CE1 NE2 sing Y N 153 HIS CE1 HE1 sing N N 154 HIS NE2 HE2 sing N N 155 HIS OXT HXT sing N N 156 HOH O H1 sing N N 157 HOH O H2 sing N N 158 ILE N CA sing N N 159 ILE N H sing N N 160 ILE N H2 sing N N 161 ILE CA C sing N N 162 ILE CA CB sing N N 163 ILE CA HA sing N N 164 ILE C O doub N N 165 ILE C OXT sing N N 166 ILE CB CG1 sing N N 167 ILE CB CG2 sing N N 168 ILE CB HB sing N N 169 ILE CG1 CD1 sing N N 170 ILE CG1 HG12 sing N N 171 ILE CG1 HG13 sing N N 172 ILE CG2 HG21 sing N N 173 ILE CG2 HG22 sing N N 174 ILE CG2 HG23 sing N N 175 ILE CD1 HD11 sing N N 176 ILE CD1 HD12 sing N N 177 ILE CD1 HD13 sing N N 178 ILE OXT HXT sing N N 179 LEU N CA sing N N 180 LEU N H sing N N 181 LEU N H2 sing N N 182 LEU CA C sing N N 183 LEU CA CB sing N N 184 LEU CA HA sing N N 185 LEU C O doub N N 186 LEU C OXT sing N N 187 LEU CB CG sing N N 188 LEU CB HB2 sing N N 189 LEU CB HB3 sing N N 190 LEU CG CD1 sing N N 191 LEU CG CD2 sing N N 192 LEU CG HG sing N N 193 LEU CD1 HD11 sing N N 194 LEU CD1 HD12 sing N N 195 LEU CD1 HD13 sing N N 196 LEU CD2 HD21 sing N N 197 LEU CD2 HD22 sing N N 198 LEU CD2 HD23 sing N N 199 LEU OXT HXT sing N N 200 LYS N CA sing N N 201 LYS N H sing N N 202 LYS N H2 sing N N 203 LYS CA C sing N N 204 LYS CA CB sing N N 205 LYS CA HA sing N N 206 LYS C O doub N N 207 LYS C OXT sing N N 208 LYS CB CG sing N N 209 LYS CB HB2 sing N N 210 LYS CB HB3 sing N N 211 LYS CG CD sing N N 212 LYS CG HG2 sing N N 213 LYS CG HG3 sing N N 214 LYS CD CE sing N N 215 LYS CD HD2 sing N N 216 LYS CD HD3 sing N N 217 LYS CE NZ sing N N 218 LYS CE HE2 sing N N 219 LYS CE HE3 sing N N 220 LYS NZ HZ1 sing N N 221 LYS NZ HZ2 sing N N 222 LYS NZ HZ3 sing N N 223 LYS OXT HXT sing N N 224 MET N CA sing N N 225 MET N H sing N N 226 MET N H2 sing N N 227 MET CA C sing N N 228 MET CA CB sing N N 229 MET CA HA sing N N 230 MET C O doub N N 231 MET C OXT sing N N 232 MET CB CG sing N N 233 MET CB HB2 sing N N 234 MET CB HB3 sing N N 235 MET CG SD sing N N 236 MET CG HG2 sing N N 237 MET CG HG3 sing N N 238 MET SD CE sing N N 239 MET CE HE1 sing N N 240 MET CE HE2 sing N N 241 MET CE HE3 sing N N 242 MET OXT HXT sing N N 243 PHE N CA sing N N 244 PHE N H sing N N 245 PHE N H2 sing N N 246 PHE CA C sing N N 247 PHE CA CB sing N N 248 PHE CA HA sing N N 249 PHE C O doub N N 250 PHE C OXT sing N N 251 PHE CB CG sing N N 252 PHE CB HB2 sing N N 253 PHE CB HB3 sing N N 254 PHE CG CD1 doub Y N 255 PHE CG CD2 sing Y N 256 PHE CD1 CE1 sing Y N 257 PHE CD1 HD1 sing N N 258 PHE CD2 CE2 doub Y N 259 PHE CD2 HD2 sing N N 260 PHE CE1 CZ doub Y N 261 PHE CE1 HE1 sing N N 262 PHE CE2 CZ sing Y N 263 PHE CE2 HE2 sing N N 264 PHE CZ HZ sing N N 265 PHE OXT HXT sing N N 266 PRO N CA sing N N 267 PRO N CD sing N N 268 PRO N H sing N N 269 PRO CA C sing N N 270 PRO CA CB sing N N 271 PRO CA HA sing N N 272 PRO C O doub N N 273 PRO C OXT sing N N 274 PRO CB CG sing N N 275 PRO CB HB2 sing N N 276 PRO CB HB3 sing N N 277 PRO CG CD sing N N 278 PRO CG HG2 sing N N 279 PRO CG HG3 sing N N 280 PRO CD HD2 sing N N 281 PRO CD HD3 sing N N 282 PRO OXT HXT sing N N 283 PTR N CA sing N N 284 PTR N H sing N N 285 PTR N H2 sing N N 286 PTR CA C sing N N 287 PTR CA CB sing N N 288 PTR CA HA sing N N 289 PTR C O doub N N 290 PTR C OXT sing N N 291 PTR OXT HXT sing N N 292 PTR CB CG sing N N 293 PTR CB HB2 sing N N 294 PTR CB HB3 sing N N 295 PTR CG CD1 doub Y N 296 PTR CG CD2 sing Y N 297 PTR CD1 CE1 sing Y N 298 PTR CD1 HD1 sing N N 299 PTR CD2 CE2 doub Y N 300 PTR CD2 HD2 sing N N 301 PTR CE1 CZ doub Y N 302 PTR CE1 HE1 sing N N 303 PTR CE2 CZ sing Y N 304 PTR CE2 HE2 sing N N 305 PTR CZ OH sing N N 306 PTR OH P sing N N 307 PTR P O1P doub N N 308 PTR P O2P sing N N 309 PTR P O3P sing N N 310 PTR O2P HO2P sing N N 311 PTR O3P HO3P sing N N 312 SER N CA sing N N 313 SER N H sing N N 314 SER N H2 sing N N 315 SER CA C sing N N 316 SER CA CB sing N N 317 SER CA HA sing N N 318 SER C O doub N N 319 SER C OXT sing N N 320 SER CB OG sing N N 321 SER CB HB2 sing N N 322 SER CB HB3 sing N N 323 SER OG HG sing N N 324 SER OXT HXT sing N N 325 THR N CA sing N N 326 THR N H sing N N 327 THR N H2 sing N N 328 THR CA C sing N N 329 THR CA CB sing N N 330 THR CA HA sing N N 331 THR C O doub N N 332 THR C OXT sing N N 333 THR CB OG1 sing N N 334 THR CB CG2 sing N N 335 THR CB HB sing N N 336 THR OG1 HG1 sing N N 337 THR CG2 HG21 sing N N 338 THR CG2 HG22 sing N N 339 THR CG2 HG23 sing N N 340 THR OXT HXT sing N N 341 TRP N CA sing N N 342 TRP N H sing N N 343 TRP N H2 sing N N 344 TRP CA C sing N N 345 TRP CA CB sing N N 346 TRP CA HA sing N N 347 TRP C O doub N N 348 TRP C OXT sing N N 349 TRP CB CG sing N N 350 TRP CB HB2 sing N N 351 TRP CB HB3 sing N N 352 TRP CG CD1 doub Y N 353 TRP CG CD2 sing Y N 354 TRP CD1 NE1 sing Y N 355 TRP CD1 HD1 sing N N 356 TRP CD2 CE2 doub Y N 357 TRP CD2 CE3 sing Y N 358 TRP NE1 CE2 sing Y N 359 TRP NE1 HE1 sing N N 360 TRP CE2 CZ2 sing Y N 361 TRP CE3 CZ3 doub Y N 362 TRP CE3 HE3 sing N N 363 TRP CZ2 CH2 doub Y N 364 TRP CZ2 HZ2 sing N N 365 TRP CZ3 CH2 sing Y N 366 TRP CZ3 HZ3 sing N N 367 TRP CH2 HH2 sing N N 368 TRP OXT HXT sing N N 369 TYR N CA sing N N 370 TYR N H sing N N 371 TYR N H2 sing N N 372 TYR CA C sing N N 373 TYR CA CB sing N N 374 TYR CA HA sing N N 375 TYR C O doub N N 376 TYR C OXT sing N N 377 TYR CB CG sing N N 378 TYR CB HB2 sing N N 379 TYR CB HB3 sing N N 380 TYR CG CD1 doub Y N 381 TYR CG CD2 sing Y N 382 TYR CD1 CE1 sing Y N 383 TYR CD1 HD1 sing N N 384 TYR CD2 CE2 doub Y N 385 TYR CD2 HD2 sing N N 386 TYR CE1 CZ doub Y N 387 TYR CE1 HE1 sing N N 388 TYR CE2 CZ sing Y N 389 TYR CE2 HE2 sing N N 390 TYR CZ OH sing N N 391 TYR OH HH sing N N 392 TYR OXT HXT sing N N 393 VAL N CA sing N N 394 VAL N H sing N N 395 VAL N H2 sing N N 396 VAL CA C sing N N 397 VAL CA CB sing N N 398 VAL CA HA sing N N 399 VAL C O doub N N 400 VAL C OXT sing N N 401 VAL CB CG1 sing N N 402 VAL CB CG2 sing N N 403 VAL CB HB sing N N 404 VAL CG1 HG11 sing N N 405 VAL CG1 HG12 sing N N 406 VAL CG1 HG13 sing N N 407 VAL CG2 HG21 sing N N 408 VAL CG2 HG22 sing N N 409 VAL CG2 HG23 sing N N 410 VAL OXT HXT sing N N 411 # _atom_sites.entry_id 1YRK _atom_sites.fract_transf_matrix[1][1] 0.026830 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023891 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011304 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_