HEADER LAYSE, TOXIN 04-FEB-05 1YRT TITLE CRYSTAL STRUCTURE ANALYSIS OF THE ADENYLYL CYCLAES CATALYTIC DOMAIN OF TITLE 2 ADENYLYL CYCLASE TOXIN OF BORDETELLA PERTUSSIS IN PRESENCE OF C- TITLE 3 TERMINAL CALMODULIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL HEMOLYSIN-ADENYLATE CYCLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CALMODULIN-SENSITIVE ADENYLATE CYCLASE; COMPND 5 SYNONYM: CYCLOLYSIN, ACT, AC-HLY; COMPND 6 EC: 4.6.1.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CALMODULIN; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: CAM, CALM, CAM1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PERTUSSIS; SOURCE 3 ORGANISM_TAXID: 520; SOURCE 4 GENE: CYA, CYAA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEX; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: CALM1, CALM2, CALM3; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PUBS520; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PPROEX KEYWDS CYAA, CAM, LAYSE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.GUO,Y.SHEN,Y.S.LEE,C.S.GIBBS,M.MRKSICH,W.J.TANG REVDAT 3 14-FEB-24 1YRT 1 REMARK LINK REVDAT 2 24-FEB-09 1YRT 1 VERSN REVDAT 1 17-JAN-06 1YRT 0 JRNL AUTH Q.GUO,Y.SHEN,Y.S.LEE,C.S.GIBBS,M.MRKSICH,W.J.TANG JRNL TITL STRUCTURAL BASIS FOR THE INTERACTION OF BORDETELLA PERTUSSIS JRNL TITL 2 ADENYLYL CYCLASE TOXIN WITH CALMODULIN. JRNL REF EMBO J. V. 24 3190 2005 JRNL REFN ISSN 0261-4189 JRNL PMID 16138079 JRNL DOI 10.1038/SJ.EMBOJ.7600800 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 25680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1240 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3235 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.023 REMARK 3 BOND ANGLES (DEGREES) : 1.120 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YRT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031857. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04189,0.97948,0.97929,0.95645 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25680 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, ISOPROPANOL, SODIUM CITRATE , REMARK 280 PH 5.6, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.60550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.68100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.68100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.80275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.68100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.68100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 104.40825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.68100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.68100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.80275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.68100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.68100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 104.40825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.60550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 GLN A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 GLN A 6 REMARK 465 ALA A 226 REMARK 465 SER A 227 REMARK 465 GLU A 228 REMARK 465 ALA A 229 REMARK 465 THR A 230 REMARK 465 GLY A 231 REMARK 465 GLY A 232 REMARK 465 LYS B 75 REMARK 465 MET B 76 REMARK 465 LYS B 77 REMARK 465 ASP B 78 REMARK 465 LYS B 148 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 7 N GLY A 8 1.36 REMARK 500 O MET A 132 N ALA A 133 1.79 REMARK 500 OD1 ASP B 93 O ASN B 97 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD2 LEU A 233 O HOH A 431 6555 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 7 C GLY A 8 N -0.216 REMARK 500 GLY A 8 C TYR A 9 N 0.213 REMARK 500 GLU A 91 CB GLU A 91 CG 0.120 REMARK 500 MET A 132 C ALA A 133 N -0.443 REMARK 500 GLY A 135 N GLY A 135 CA 0.384 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 7 CA - C - N ANGL. DEV. = 38.1 DEGREES REMARK 500 ALA A 7 O - C - N ANGL. DEV. = -52.5 DEGREES REMARK 500 GLY A 8 C - N - CA ANGL. DEV. = 12.7 DEGREES REMARK 500 GLY A 8 CA - C - N ANGL. DEV. = -20.9 DEGREES REMARK 500 ALA A 10 N - CA - CB ANGL. DEV. = -22.6 DEGREES REMARK 500 ALA A 10 N - CA - C ANGL. DEV. = 29.7 DEGREES REMARK 500 PHE A 86 CA - C - N ANGL. DEV. = 14.7 DEGREES REMARK 500 GLY A 87 C - N - CA ANGL. DEV. = -14.7 DEGREES REMARK 500 ARG A 119 NE - CZ - NH1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 119 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 GLY A 135 C - N - CA ANGL. DEV. = -22.2 DEGREES REMARK 500 LEU A 233 O - C - N ANGL. DEV. = -12.7 DEGREES REMARK 500 ASP A 234 C - N - CA ANGL. DEV. = 26.3 DEGREES REMARK 500 ASP A 234 CA - CB - CG ANGL. DEV. = -17.9 DEGREES REMARK 500 ARG A 258 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 258 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 VAL A 290 CB - CA - C ANGL. DEV. = 14.6 DEGREES REMARK 500 VAL A 290 O - C - N ANGL. DEV. = -11.3 DEGREES REMARK 500 GLY A 291 C - N - CA ANGL. DEV. = -17.9 DEGREES REMARK 500 THR A 326 N - CA - C ANGL. DEV. = -23.6 DEGREES REMARK 500 ARG A 327 N - CA - CB ANGL. DEV. = -28.9 DEGREES REMARK 500 ARG A 338 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 338 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ASP B 95 N - CA - C ANGL. DEV. = -18.1 DEGREES REMARK 500 GLY B 96 C - N - CA ANGL. DEV. = -14.5 DEGREES REMARK 500 THR B 110 N - CA - CB ANGL. DEV. = -33.5 DEGREES REMARK 500 GLY B 134 C - N - CA ANGL. DEV. = -18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 9 88.19 64.98 REMARK 500 ALA A 89 172.79 -55.71 REMARK 500 HIS A 106 59.20 -112.94 REMARK 500 ASP A 134 22.86 87.74 REMARK 500 LYS A 166 122.36 -36.04 REMARK 500 ASP A 169 -0.97 -44.08 REMARK 500 THR A 210 -133.22 -101.88 REMARK 500 SER A 211 51.87 -144.77 REMARK 500 ARG A 223 -136.34 -93.92 REMARK 500 ASP A 234 88.91 47.32 REMARK 500 VAL A 290 -159.61 -106.26 REMARK 500 GLU A 311 -9.32 -55.29 REMARK 500 ASP A 360 -157.89 -101.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 7 GLY A 8 133.48 REMARK 500 GLY A 8 TYR A 9 -146.83 REMARK 500 ASP A 134 GLY A 135 -142.59 REMARK 500 LEU A 233 ASP A 234 -128.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 342 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 7 55.78 REMARK 500 GLY A 8 -21.09 REMARK 500 MET A 132 -18.18 REMARK 500 ALA A 133 17.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 93 OD2 REMARK 620 2 ASP B 95 OD1 74.2 REMARK 620 3 ASN B 97 OD1 87.7 80.6 REMARK 620 4 TYR B 99 O 82.0 148.0 77.4 REMARK 620 5 GLU B 104 OE1 107.4 126.1 151.7 81.1 REMARK 620 6 GLU B 104 OE2 96.8 75.0 152.8 129.7 51.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 800 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 129 OD2 REMARK 620 2 ASP B 131 OD1 83.0 REMARK 620 3 ASP B 133 OD1 88.0 76.0 REMARK 620 4 GLN B 135 O 88.9 152.8 77.7 REMARK 620 5 GLU B 140 OE1 115.6 125.6 148.0 81.2 REMARK 620 6 GLU B 140 OE2 90.8 77.7 153.7 128.5 53.1 REMARK 620 7 HOH B 809 O 162.2 83.3 77.6 98.1 81.8 97.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YRU RELATED DB: PDB DBREF 1YRT A 1 364 UNP P15318 CYAA_BORPE 1 364 DBREF 1YRT B 75 148 UNP P62158 CALM_HUMAN 75 148 SEQRES 1 A 364 MET GLN GLN SER HIS GLN ALA GLY TYR ALA ASN ALA ALA SEQRES 2 A 364 ASP ARG GLU SER GLY ILE PRO ALA ALA VAL LEU ASP GLY SEQRES 3 A 364 ILE LYS ALA VAL ALA LYS GLU LYS ASN ALA THR LEU MET SEQRES 4 A 364 PHE ARG LEU VAL ASN PRO HIS SER THR SER LEU ILE ALA SEQRES 5 A 364 GLU GLY VAL ALA THR LYS GLY LEU GLY VAL HIS ALA LYS SEQRES 6 A 364 SER SER ASP TRP GLY LEU GLN ALA GLY TYR ILE PRO VAL SEQRES 7 A 364 ASN PRO ASN LEU SER LYS LEU PHE GLY ARG ALA PRO GLU SEQRES 8 A 364 VAL ILE ALA ARG ALA ASP ASN ASP VAL ASN SER SER LEU SEQRES 9 A 364 ALA HIS GLY HIS THR ALA VAL ASP LEU THR LEU SER LYS SEQRES 10 A 364 GLU ARG LEU ASP TYR LEU ARG GLN ALA GLY LEU VAL THR SEQRES 11 A 364 GLY MET ALA ASP GLY VAL VAL ALA SER ASN HIS ALA GLY SEQRES 12 A 364 TYR GLU GLN PHE GLU PHE ARG VAL LYS GLU THR SER ASP SEQRES 13 A 364 GLY ARG TYR ALA VAL GLN TYR ARG ARG LYS GLY GLY ASP SEQRES 14 A 364 ASP PHE GLU ALA VAL LYS VAL ILE GLY ASN ALA ALA GLY SEQRES 15 A 364 ILE PRO LEU THR ALA ASP ILE ASP MET PHE ALA ILE MET SEQRES 16 A 364 PRO HIS LEU SER ASN PHE ARG ASP SER ALA ARG SER SER SEQRES 17 A 364 VAL THR SER GLY ASP SER VAL THR ASP TYR LEU ALA ARG SEQRES 18 A 364 THR ARG ARG ALA ALA SER GLU ALA THR GLY GLY LEU ASP SEQRES 19 A 364 ARG GLU ARG ILE ASP LEU LEU TRP LYS ILE ALA ARG ALA SEQRES 20 A 364 GLY ALA ARG SER ALA VAL GLY THR GLU ALA ARG ARG GLN SEQRES 21 A 364 PHE ARG TYR ASP GLY ASP MET ASN ILE GLY VAL ILE THR SEQRES 22 A 364 ASP PHE GLU LEU GLU VAL ARG ASN ALA LEU ASN ARG ARG SEQRES 23 A 364 ALA HIS ALA VAL GLY ALA GLN ASP VAL VAL GLN HIS GLY SEQRES 24 A 364 THR GLU GLN ASN ASN PRO PHE PRO GLU ALA ASP GLU LYS SEQRES 25 A 364 ILE PHE VAL VAL SER ALA THR GLY GLU SER GLN MET LEU SEQRES 26 A 364 THR ARG GLY GLN LEU LYS GLU TYR ILE GLY GLN GLN ARG SEQRES 27 A 364 GLY GLU GLY TYR VAL PHE TYR GLU ASN ARG ALA TYR GLY SEQRES 28 A 364 VAL ALA GLY LYS SER LEU PHE ASP ASP GLY LEU GLY ALA SEQRES 1 B 74 LYS MET LYS ASP THR ASP SER GLU GLU GLU ILE ARG GLU SEQRES 2 B 74 ALA PHE ARG VAL PHE ASP LYS ASP GLY ASN GLY TYR ILE SEQRES 3 B 74 SER ALA ALA GLU LEU ARG HIS VAL MET THR ASN LEU GLY SEQRES 4 B 74 GLU LYS LEU THR ASP GLU GLU VAL ASP GLU MET ILE ARG SEQRES 5 B 74 GLU ALA ASP ILE ASP GLY ASP GLY GLN VAL ASN TYR GLU SEQRES 6 B 74 GLU PHE VAL GLN MET MET THR ALA LYS HET CA B 800 1 HET CA B 801 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *160(H2 O) HELIX 1 1 ASN A 11 SER A 17 1 7 HELIX 2 2 PRO A 20 LYS A 34 1 15 HELIX 3 3 ASN A 44 GLU A 53 1 10 HELIX 4 4 TRP A 69 ALA A 73 5 5 HELIX 5 5 ASN A 79 SER A 83 5 5 HELIX 6 6 ALA A 89 HIS A 106 1 18 HELIX 7 7 SER A 116 ALA A 126 1 11 HELIX 8 8 HIS A 141 GLU A 145 5 5 HELIX 9 9 LEU A 198 ASN A 200 5 3 HELIX 10 10 PHE A 201 THR A 210 1 10 HELIX 11 11 SER A 214 ARG A 223 1 10 HELIX 12 12 ASP A 234 VAL A 253 1 20 HELIX 13 13 GLU A 256 GLN A 260 5 5 HELIX 14 14 THR A 273 VAL A 290 1 18 HELIX 15 15 THR A 300 ASN A 304 5 5 HELIX 16 16 THR A 326 GLU A 340 1 15 HELIX 17 17 SER B 81 ASP B 93 1 13 HELIX 18 18 SER B 101 LEU B 112 1 12 HELIX 19 19 THR B 117 ASP B 129 1 13 HELIX 20 20 TYR B 138 ALA B 147 1 10 SHEET 1 A 4 MET A 191 PRO A 196 0 SHEET 2 A 4 ALA A 36 ARG A 41 -1 N THR A 37 O MET A 195 SHEET 3 A 4 ILE A 313 VAL A 316 -1 O PHE A 314 N PHE A 40 SHEET 4 A 4 SER A 322 LEU A 325 -1 O GLN A 323 N VAL A 315 SHEET 1 B 2 ALA A 56 THR A 57 0 SHEET 2 B 2 LEU A 185 THR A 186 1 O THR A 186 N ALA A 56 SHEET 1 C 2 THR A 109 ASP A 112 0 SHEET 2 C 2 LYS A 175 GLY A 178 -1 O GLY A 178 N THR A 109 SHEET 1 D 3 THR A 114 LEU A 115 0 SHEET 2 D 3 TYR A 159 ARG A 165 -1 O TYR A 159 N LEU A 115 SHEET 3 D 3 PHE A 147 GLU A 153 -1 N GLU A 148 O ARG A 164 SHEET 1 E 3 THR A 114 LEU A 115 0 SHEET 2 E 3 TYR A 159 ARG A 165 -1 O TYR A 159 N LEU A 115 SHEET 3 E 3 GLU A 172 ALA A 173 -1 O GLU A 172 N TYR A 163 SHEET 1 F 2 GLY A 131 MET A 132 0 SHEET 2 F 2 VAL A 137 ALA A 138 -1 O ALA A 138 N GLY A 131 SHEET 1 G 2 ARG A 262 ASP A 264 0 SHEET 2 G 2 MET A 267 GLY A 270 -1 O ILE A 269 N ARG A 262 SHEET 1 H 2 TYR B 99 ILE B 100 0 SHEET 2 H 2 VAL B 136 ASN B 137 -1 O VAL B 136 N ILE B 100 LINK OD2 ASP B 93 CA CA B 801 1555 1555 2.30 LINK OD1 ASP B 95 CA CA B 801 1555 1555 2.32 LINK OD1 ASN B 97 CA CA B 801 1555 1555 2.50 LINK O TYR B 99 CA CA B 801 1555 1555 2.31 LINK OE1 GLU B 104 CA CA B 801 1555 1555 2.47 LINK OE2 GLU B 104 CA CA B 801 1555 1555 2.54 LINK OD2 ASP B 129 CA CA B 800 1555 1555 2.27 LINK OD1 ASP B 131 CA CA B 800 1555 1555 2.47 LINK OD1 ASP B 133 CA CA B 800 1555 1555 2.28 LINK O GLN B 135 CA CA B 800 1555 1555 2.29 LINK OE1 GLU B 140 CA CA B 800 1555 1555 2.43 LINK OE2 GLU B 140 CA CA B 800 1555 1555 2.49 LINK CA CA B 800 O HOH B 809 1555 1555 2.44 SITE 1 AC1 6 ASP B 129 ASP B 131 ASP B 133 GLN B 135 SITE 2 AC1 6 GLU B 140 HOH B 809 SITE 1 AC2 5 ASP B 93 ASP B 95 ASN B 97 TYR B 99 SITE 2 AC2 5 GLU B 104 CRYST1 79.362 79.362 139.211 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012600 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012600 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007183 0.00000