data_1YU9 # _entry.id 1YU9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YU9 pdb_00001yu9 10.2210/pdb1yu9/pdb RCSB RCSB031929 ? ? WWPDB D_1000031929 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site 8 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 29 4 'Structure model' '_struct_ref_seq_dif.details' 30 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YU9 _pdbx_database_status.recvd_initial_deposition_date 2005-02-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Eathiraj, S.' 1 'Pan, X.' 2 'Ritacco, C.' 3 'Lambright, D.G.' 4 # _citation.id primary _citation.title 'Structural basis of family-wide Rab GTPase recognition by rabenosyn-5.' _citation.journal_abbrev Nature _citation.journal_volume 436 _citation.page_first 415 _citation.page_last 419 _citation.year 2005 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16034420 _citation.pdbx_database_id_DOI 10.1038/nature03798 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Eathiraj, S.' 1 ? primary 'Pan, X.' 2 ? primary 'Ritacco, C.' 3 ? primary 'Lambright, D.G.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GTP-binding protein' 19674.312 1 ? ? 'GTPase domain' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 4 non-polymer syn 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 522.196 1 ? ? ? ? 5 water nat water 18.015 237 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSY YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGED VEEAFVQCARKILNK ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSY YRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGED VEEAFVQCARKILNK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'SULFATE ION' SO4 4 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' GNP 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 GLU n 1 7 THR n 1 8 TYR n 1 9 ASP n 1 10 PHE n 1 11 LEU n 1 12 PHE n 1 13 LYS n 1 14 PHE n 1 15 LEU n 1 16 VAL n 1 17 ILE n 1 18 GLY n 1 19 ASN n 1 20 ALA n 1 21 GLY n 1 22 THR n 1 23 GLY n 1 24 LYS n 1 25 SER n 1 26 CYS n 1 27 LEU n 1 28 LEU n 1 29 HIS n 1 30 GLN n 1 31 PHE n 1 32 ILE n 1 33 GLU n 1 34 LYS n 1 35 LYS n 1 36 PHE n 1 37 LYS n 1 38 ASP n 1 39 ASP n 1 40 SER n 1 41 ASN n 1 42 HIS n 1 43 THR n 1 44 ILE n 1 45 GLY n 1 46 VAL n 1 47 GLU n 1 48 PHE n 1 49 GLY n 1 50 SER n 1 51 LYS n 1 52 ILE n 1 53 ILE n 1 54 ASN n 1 55 VAL n 1 56 GLY n 1 57 GLY n 1 58 LYS n 1 59 TYR n 1 60 VAL n 1 61 LYS n 1 62 LEU n 1 63 GLN n 1 64 ILE n 1 65 TRP n 1 66 ASP n 1 67 THR n 1 68 ALA n 1 69 GLY n 1 70 GLN n 1 71 GLU n 1 72 ARG n 1 73 PHE n 1 74 ARG n 1 75 SER n 1 76 VAL n 1 77 THR n 1 78 ARG n 1 79 SER n 1 80 TYR n 1 81 TYR n 1 82 ARG n 1 83 GLY n 1 84 ALA n 1 85 ALA n 1 86 GLY n 1 87 ALA n 1 88 LEU n 1 89 LEU n 1 90 VAL n 1 91 TYR n 1 92 ASP n 1 93 ILE n 1 94 THR n 1 95 SER n 1 96 ARG n 1 97 GLU n 1 98 THR n 1 99 TYR n 1 100 ASN n 1 101 ALA n 1 102 LEU n 1 103 THR n 1 104 ASN n 1 105 TRP n 1 106 LEU n 1 107 THR n 1 108 ASP n 1 109 ALA n 1 110 ARG n 1 111 MET n 1 112 LEU n 1 113 ALA n 1 114 SER n 1 115 GLN n 1 116 ASN n 1 117 ILE n 1 118 VAL n 1 119 ILE n 1 120 ILE n 1 121 LEU n 1 122 CYS n 1 123 GLY n 1 124 ASN n 1 125 LYS n 1 126 LYS n 1 127 ASP n 1 128 LEU n 1 129 ASP n 1 130 ALA n 1 131 ASP n 1 132 ARG n 1 133 GLU n 1 134 VAL n 1 135 THR n 1 136 PHE n 1 137 LEU n 1 138 GLU n 1 139 ALA n 1 140 SER n 1 141 ARG n 1 142 PHE n 1 143 ALA n 1 144 GLN n 1 145 GLU n 1 146 ASN n 1 147 GLU n 1 148 LEU n 1 149 MET n 1 150 PHE n 1 151 LEU n 1 152 GLU n 1 153 THR n 1 154 SER n 1 155 ALA n 1 156 LEU n 1 157 THR n 1 158 GLY n 1 159 GLU n 1 160 ASP n 1 161 VAL n 1 162 GLU n 1 163 GLU n 1 164 ALA n 1 165 PHE n 1 166 VAL n 1 167 GLN n 1 168 CYS n 1 169 ALA n 1 170 ARG n 1 171 LYS n 1 172 ILE n 1 173 LEU n 1 174 ASN n 1 175 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene Rab4a _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) Codon Plus-RIL cells' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PGEX-6P1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GNP non-polymer . 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' ? 'C10 H17 N6 O13 P3' 522.196 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 -2 GLY GLY A . n A 1 2 PRO 2 -1 -1 PRO PRO A . n A 1 3 LEU 3 0 0 LEU LEU A . n A 1 4 GLY 4 1 1 GLY GLY A . n A 1 5 SER 5 2 2 SER SER A . n A 1 6 GLU 6 3 3 GLU GLU A . n A 1 7 THR 7 4 4 THR THR A . n A 1 8 TYR 8 5 5 TYR TYR A . n A 1 9 ASP 9 6 6 ASP ASP A . n A 1 10 PHE 10 7 7 PHE PHE A . n A 1 11 LEU 11 8 8 LEU LEU A . n A 1 12 PHE 12 9 9 PHE PHE A . n A 1 13 LYS 13 10 10 LYS LYS A . n A 1 14 PHE 14 11 11 PHE PHE A . n A 1 15 LEU 15 12 12 LEU LEU A . n A 1 16 VAL 16 13 13 VAL VAL A . n A 1 17 ILE 17 14 14 ILE ILE A . n A 1 18 GLY 18 15 15 GLY GLY A . n A 1 19 ASN 19 16 16 ASN ASN A . n A 1 20 ALA 20 17 17 ALA ALA A . n A 1 21 GLY 21 18 18 GLY GLY A . n A 1 22 THR 22 19 19 THR THR A . n A 1 23 GLY 23 20 20 GLY GLY A . n A 1 24 LYS 24 21 21 LYS LYS A . n A 1 25 SER 25 22 22 SER SER A . n A 1 26 CYS 26 23 23 CYS CYS A . n A 1 27 LEU 27 24 24 LEU LEU A . n A 1 28 LEU 28 25 25 LEU LEU A . n A 1 29 HIS 29 26 26 HIS HIS A . n A 1 30 GLN 30 27 27 GLN GLN A . n A 1 31 PHE 31 28 28 PHE PHE A . n A 1 32 ILE 32 29 29 ILE ILE A . n A 1 33 GLU 33 30 30 GLU GLU A . n A 1 34 LYS 34 31 31 LYS LYS A . n A 1 35 LYS 35 32 32 LYS LYS A . n A 1 36 PHE 36 33 33 PHE PHE A . n A 1 37 LYS 37 34 34 LYS LYS A . n A 1 38 ASP 38 35 35 ASP ASP A . n A 1 39 ASP 39 36 36 ASP ASP A . n A 1 40 SER 40 37 37 SER SER A . n A 1 41 ASN 41 38 38 ASN ASN A . n A 1 42 HIS 42 39 39 HIS HIS A . n A 1 43 THR 43 40 40 THR THR A . n A 1 44 ILE 44 41 41 ILE ILE A . n A 1 45 GLY 45 42 42 GLY GLY A . n A 1 46 VAL 46 43 43 VAL VAL A . n A 1 47 GLU 47 44 44 GLU GLU A . n A 1 48 PHE 48 45 45 PHE PHE A . n A 1 49 GLY 49 46 46 GLY GLY A . n A 1 50 SER 50 47 47 SER SER A . n A 1 51 LYS 51 48 48 LYS LYS A . n A 1 52 ILE 52 49 49 ILE ILE A . n A 1 53 ILE 53 50 50 ILE ILE A . n A 1 54 ASN 54 51 51 ASN ASN A . n A 1 55 VAL 55 52 52 VAL VAL A . n A 1 56 GLY 56 53 53 GLY GLY A . n A 1 57 GLY 57 54 54 GLY GLY A . n A 1 58 LYS 58 55 55 LYS LYS A . n A 1 59 TYR 59 56 56 TYR TYR A . n A 1 60 VAL 60 57 57 VAL VAL A . n A 1 61 LYS 61 58 58 LYS LYS A . n A 1 62 LEU 62 59 59 LEU LEU A . n A 1 63 GLN 63 60 60 GLN GLN A . n A 1 64 ILE 64 61 61 ILE ILE A . n A 1 65 TRP 65 62 62 TRP TRP A . n A 1 66 ASP 66 63 63 ASP ASP A . n A 1 67 THR 67 64 64 THR THR A . n A 1 68 ALA 68 65 65 ALA ALA A . n A 1 69 GLY 69 66 66 GLY GLY A . n A 1 70 GLN 70 67 67 GLN GLN A . n A 1 71 GLU 71 68 68 GLU GLU A . n A 1 72 ARG 72 69 69 ARG ARG A . n A 1 73 PHE 73 70 70 PHE PHE A . n A 1 74 ARG 74 71 71 ARG ARG A . n A 1 75 SER 75 72 72 SER SER A . n A 1 76 VAL 76 73 73 VAL VAL A . n A 1 77 THR 77 74 74 THR THR A . n A 1 78 ARG 78 75 75 ARG ARG A . n A 1 79 SER 79 76 76 SER SER A . n A 1 80 TYR 80 77 77 TYR TYR A . n A 1 81 TYR 81 78 78 TYR TYR A . n A 1 82 ARG 82 79 79 ARG ARG A . n A 1 83 GLY 83 80 80 GLY GLY A . n A 1 84 ALA 84 81 81 ALA ALA A . n A 1 85 ALA 85 82 82 ALA ALA A . n A 1 86 GLY 86 83 83 GLY GLY A . n A 1 87 ALA 87 84 84 ALA ALA A . n A 1 88 LEU 88 85 85 LEU LEU A . n A 1 89 LEU 89 86 86 LEU LEU A . n A 1 90 VAL 90 87 87 VAL VAL A . n A 1 91 TYR 91 88 88 TYR TYR A . n A 1 92 ASP 92 89 89 ASP ASP A . n A 1 93 ILE 93 90 90 ILE ILE A . n A 1 94 THR 94 91 91 THR THR A . n A 1 95 SER 95 92 92 SER SER A . n A 1 96 ARG 96 93 93 ARG ARG A . n A 1 97 GLU 97 94 94 GLU GLU A . n A 1 98 THR 98 95 95 THR THR A . n A 1 99 TYR 99 96 96 TYR TYR A . n A 1 100 ASN 100 97 97 ASN ASN A . n A 1 101 ALA 101 98 98 ALA ALA A . n A 1 102 LEU 102 99 99 LEU LEU A . n A 1 103 THR 103 100 100 THR THR A . n A 1 104 ASN 104 101 101 ASN ASN A . n A 1 105 TRP 105 102 102 TRP TRP A . n A 1 106 LEU 106 103 103 LEU LEU A . n A 1 107 THR 107 104 104 THR THR A . n A 1 108 ASP 108 105 105 ASP ASP A . n A 1 109 ALA 109 106 106 ALA ALA A . n A 1 110 ARG 110 107 107 ARG ARG A . n A 1 111 MET 111 108 108 MET MET A . n A 1 112 LEU 112 109 109 LEU LEU A . n A 1 113 ALA 113 110 110 ALA ALA A . n A 1 114 SER 114 111 111 SER SER A . n A 1 115 GLN 115 112 112 GLN GLN A . n A 1 116 ASN 116 113 113 ASN ASN A . n A 1 117 ILE 117 114 114 ILE ILE A . n A 1 118 VAL 118 115 115 VAL VAL A . n A 1 119 ILE 119 116 116 ILE ILE A . n A 1 120 ILE 120 117 117 ILE ILE A . n A 1 121 LEU 121 118 118 LEU LEU A . n A 1 122 CYS 122 119 119 CYS CYS A . n A 1 123 GLY 123 120 120 GLY GLY A . n A 1 124 ASN 124 121 121 ASN ASN A . n A 1 125 LYS 125 122 122 LYS LYS A . n A 1 126 LYS 126 123 123 LYS LYS A . n A 1 127 ASP 127 124 124 ASP ASP A . n A 1 128 LEU 128 125 125 LEU LEU A . n A 1 129 ASP 129 126 126 ASP ASP A . n A 1 130 ALA 130 127 127 ALA ALA A . n A 1 131 ASP 131 128 128 ASP ASP A . n A 1 132 ARG 132 129 129 ARG ARG A . n A 1 133 GLU 133 130 130 GLU GLU A . n A 1 134 VAL 134 131 131 VAL VAL A . n A 1 135 THR 135 132 132 THR THR A . n A 1 136 PHE 136 133 133 PHE PHE A . n A 1 137 LEU 137 134 134 LEU LEU A . n A 1 138 GLU 138 135 135 GLU GLU A . n A 1 139 ALA 139 136 136 ALA ALA A . n A 1 140 SER 140 137 137 SER SER A . n A 1 141 ARG 141 138 138 ARG ARG A . n A 1 142 PHE 142 139 139 PHE PHE A . n A 1 143 ALA 143 140 140 ALA ALA A . n A 1 144 GLN 144 141 141 GLN GLN A . n A 1 145 GLU 145 142 142 GLU GLU A . n A 1 146 ASN 146 143 143 ASN ASN A . n A 1 147 GLU 147 144 144 GLU GLU A . n A 1 148 LEU 148 145 145 LEU LEU A . n A 1 149 MET 149 146 146 MET MET A . n A 1 150 PHE 150 147 147 PHE PHE A . n A 1 151 LEU 151 148 148 LEU LEU A . n A 1 152 GLU 152 149 149 GLU GLU A . n A 1 153 THR 153 150 150 THR THR A . n A 1 154 SER 154 151 151 SER SER A . n A 1 155 ALA 155 152 152 ALA ALA A . n A 1 156 LEU 156 153 153 LEU LEU A . n A 1 157 THR 157 154 154 THR THR A . n A 1 158 GLY 158 155 155 GLY GLY A . n A 1 159 GLU 159 156 156 GLU GLU A . n A 1 160 ASP 160 157 157 ASP ASP A . n A 1 161 VAL 161 158 158 VAL VAL A . n A 1 162 GLU 162 159 159 GLU GLU A . n A 1 163 GLU 163 160 160 GLU GLU A . n A 1 164 ALA 164 161 161 ALA ALA A . n A 1 165 PHE 165 162 162 PHE PHE A . n A 1 166 VAL 166 163 163 VAL VAL A . n A 1 167 GLN 167 164 164 GLN GLN A . n A 1 168 CYS 168 165 165 CYS CYS A . n A 1 169 ALA 169 166 166 ALA ALA A . n A 1 170 ARG 170 167 167 ARG ARG A . n A 1 171 LYS 171 168 168 LYS LYS A . n A 1 172 ILE 172 169 169 ILE ILE A . n A 1 173 LEU 173 170 170 LEU LEU A . n A 1 174 ASN 174 171 171 ASN ASN A . n A 1 175 LYS 175 172 172 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 701 701 MG MG A . C 3 SO4 1 601 601 SO4 SO4 A . D 3 SO4 1 602 602 SO4 SO4 A . E 4 GNP 1 700 700 GNP GNP A . F 5 HOH 1 702 2 HOH HOH A . F 5 HOH 2 703 3 HOH HOH A . F 5 HOH 3 704 4 HOH HOH A . F 5 HOH 4 705 5 HOH HOH A . F 5 HOH 5 706 6 HOH HOH A . F 5 HOH 6 707 8 HOH HOH A . F 5 HOH 7 708 10 HOH HOH A . F 5 HOH 8 709 11 HOH HOH A . F 5 HOH 9 710 12 HOH HOH A . F 5 HOH 10 711 13 HOH HOH A . F 5 HOH 11 712 14 HOH HOH A . F 5 HOH 12 713 16 HOH HOH A . F 5 HOH 13 714 17 HOH HOH A . F 5 HOH 14 715 18 HOH HOH A . F 5 HOH 15 716 19 HOH HOH A . F 5 HOH 16 717 20 HOH HOH A . F 5 HOH 17 718 21 HOH HOH A . F 5 HOH 18 719 22 HOH HOH A . F 5 HOH 19 720 23 HOH HOH A . F 5 HOH 20 721 24 HOH HOH A . F 5 HOH 21 722 25 HOH HOH A . F 5 HOH 22 723 26 HOH HOH A . F 5 HOH 23 724 28 HOH HOH A . F 5 HOH 24 725 29 HOH HOH A . F 5 HOH 25 726 30 HOH HOH A . F 5 HOH 26 727 31 HOH HOH A . F 5 HOH 27 728 32 HOH HOH A . F 5 HOH 28 729 33 HOH HOH A . F 5 HOH 29 730 34 HOH HOH A . F 5 HOH 30 731 35 HOH HOH A . F 5 HOH 31 732 37 HOH HOH A . F 5 HOH 32 733 38 HOH HOH A . F 5 HOH 33 734 39 HOH HOH A . F 5 HOH 34 735 40 HOH HOH A . F 5 HOH 35 736 44 HOH HOH A . F 5 HOH 36 737 45 HOH HOH A . F 5 HOH 37 738 47 HOH HOH A . F 5 HOH 38 739 48 HOH HOH A . F 5 HOH 39 740 49 HOH HOH A . F 5 HOH 40 741 50 HOH HOH A . F 5 HOH 41 742 51 HOH HOH A . F 5 HOH 42 743 53 HOH HOH A . F 5 HOH 43 744 54 HOH HOH A . F 5 HOH 44 745 55 HOH HOH A . F 5 HOH 45 746 56 HOH HOH A . F 5 HOH 46 747 57 HOH HOH A . F 5 HOH 47 748 58 HOH HOH A . F 5 HOH 48 749 60 HOH HOH A . F 5 HOH 49 750 61 HOH HOH A . F 5 HOH 50 751 62 HOH HOH A . F 5 HOH 51 752 63 HOH HOH A . F 5 HOH 52 753 64 HOH HOH A . F 5 HOH 53 754 65 HOH HOH A . F 5 HOH 54 755 67 HOH HOH A . F 5 HOH 55 756 69 HOH HOH A . F 5 HOH 56 757 70 HOH HOH A . F 5 HOH 57 758 71 HOH HOH A . F 5 HOH 58 759 73 HOH HOH A . F 5 HOH 59 760 74 HOH HOH A . F 5 HOH 60 761 75 HOH HOH A . F 5 HOH 61 762 76 HOH HOH A . F 5 HOH 62 763 78 HOH HOH A . F 5 HOH 63 764 79 HOH HOH A . F 5 HOH 64 765 80 HOH HOH A . F 5 HOH 65 766 82 HOH HOH A . F 5 HOH 66 767 83 HOH HOH A . F 5 HOH 67 768 84 HOH HOH A . F 5 HOH 68 769 86 HOH HOH A . F 5 HOH 69 770 87 HOH HOH A . F 5 HOH 70 771 88 HOH HOH A . F 5 HOH 71 772 89 HOH HOH A . F 5 HOH 72 773 90 HOH HOH A . F 5 HOH 73 774 91 HOH HOH A . F 5 HOH 74 775 92 HOH HOH A . F 5 HOH 75 776 94 HOH HOH A . F 5 HOH 76 777 96 HOH HOH A . F 5 HOH 77 778 98 HOH HOH A . F 5 HOH 78 779 99 HOH HOH A . F 5 HOH 79 780 101 HOH HOH A . F 5 HOH 80 781 102 HOH HOH A . F 5 HOH 81 782 105 HOH HOH A . F 5 HOH 82 783 106 HOH HOH A . F 5 HOH 83 784 107 HOH HOH A . F 5 HOH 84 785 108 HOH HOH A . F 5 HOH 85 786 109 HOH HOH A . F 5 HOH 86 787 110 HOH HOH A . F 5 HOH 87 788 111 HOH HOH A . F 5 HOH 88 789 112 HOH HOH A . F 5 HOH 89 790 113 HOH HOH A . F 5 HOH 90 791 114 HOH HOH A . F 5 HOH 91 792 116 HOH HOH A . F 5 HOH 92 793 117 HOH HOH A . F 5 HOH 93 794 119 HOH HOH A . F 5 HOH 94 795 120 HOH HOH A . F 5 HOH 95 796 121 HOH HOH A . F 5 HOH 96 797 122 HOH HOH A . F 5 HOH 97 798 123 HOH HOH A . F 5 HOH 98 799 125 HOH HOH A . F 5 HOH 99 800 127 HOH HOH A . F 5 HOH 100 801 129 HOH HOH A . F 5 HOH 101 802 131 HOH HOH A . F 5 HOH 102 803 133 HOH HOH A . F 5 HOH 103 804 134 HOH HOH A . F 5 HOH 104 805 135 HOH HOH A . F 5 HOH 105 806 136 HOH HOH A . F 5 HOH 106 807 137 HOH HOH A . F 5 HOH 107 808 138 HOH HOH A . F 5 HOH 108 809 139 HOH HOH A . F 5 HOH 109 810 140 HOH HOH A . F 5 HOH 110 811 141 HOH HOH A . F 5 HOH 111 812 145 HOH HOH A . F 5 HOH 112 813 146 HOH HOH A . F 5 HOH 113 814 147 HOH HOH A . F 5 HOH 114 815 149 HOH HOH A . F 5 HOH 115 816 150 HOH HOH A . F 5 HOH 116 817 151 HOH HOH A . F 5 HOH 117 818 152 HOH HOH A . F 5 HOH 118 819 154 HOH HOH A . F 5 HOH 119 820 155 HOH HOH A . F 5 HOH 120 821 156 HOH HOH A . F 5 HOH 121 822 157 HOH HOH A . F 5 HOH 122 823 158 HOH HOH A . F 5 HOH 123 824 159 HOH HOH A . F 5 HOH 124 825 161 HOH HOH A . F 5 HOH 125 826 162 HOH HOH A . F 5 HOH 126 827 164 HOH HOH A . F 5 HOH 127 828 165 HOH HOH A . F 5 HOH 128 829 166 HOH HOH A . F 5 HOH 129 830 167 HOH HOH A . F 5 HOH 130 831 168 HOH HOH A . F 5 HOH 131 832 169 HOH HOH A . F 5 HOH 132 833 170 HOH HOH A . F 5 HOH 133 834 171 HOH HOH A . F 5 HOH 134 835 172 HOH HOH A . F 5 HOH 135 836 173 HOH HOH A . F 5 HOH 136 837 174 HOH HOH A . F 5 HOH 137 838 175 HOH HOH A . F 5 HOH 138 839 176 HOH HOH A . F 5 HOH 139 840 177 HOH HOH A . F 5 HOH 140 841 179 HOH HOH A . F 5 HOH 141 842 180 HOH HOH A . F 5 HOH 142 843 181 HOH HOH A . F 5 HOH 143 844 183 HOH HOH A . F 5 HOH 144 845 184 HOH HOH A . F 5 HOH 145 846 186 HOH HOH A . F 5 HOH 146 847 187 HOH HOH A . F 5 HOH 147 848 188 HOH HOH A . F 5 HOH 148 849 189 HOH HOH A . F 5 HOH 149 850 190 HOH HOH A . F 5 HOH 150 851 191 HOH HOH A . F 5 HOH 151 852 192 HOH HOH A . F 5 HOH 152 853 194 HOH HOH A . F 5 HOH 153 854 195 HOH HOH A . F 5 HOH 154 855 196 HOH HOH A . F 5 HOH 155 856 197 HOH HOH A . F 5 HOH 156 857 198 HOH HOH A . F 5 HOH 157 858 199 HOH HOH A . F 5 HOH 158 859 200 HOH HOH A . F 5 HOH 159 860 201 HOH HOH A . F 5 HOH 160 861 202 HOH HOH A . F 5 HOH 161 862 203 HOH HOH A . F 5 HOH 162 863 205 HOH HOH A . F 5 HOH 163 864 207 HOH HOH A . F 5 HOH 164 865 208 HOH HOH A . F 5 HOH 165 866 209 HOH HOH A . F 5 HOH 166 867 211 HOH HOH A . F 5 HOH 167 868 213 HOH HOH A . F 5 HOH 168 869 215 HOH HOH A . F 5 HOH 169 870 216 HOH HOH A . F 5 HOH 170 871 220 HOH HOH A . F 5 HOH 171 872 221 HOH HOH A . F 5 HOH 172 873 222 HOH HOH A . F 5 HOH 173 874 224 HOH HOH A . F 5 HOH 174 875 226 HOH HOH A . F 5 HOH 175 876 232 HOH HOH A . F 5 HOH 176 877 233 HOH HOH A . F 5 HOH 177 878 235 HOH HOH A . F 5 HOH 178 879 236 HOH HOH A . F 5 HOH 179 880 237 HOH HOH A . F 5 HOH 180 881 238 HOH HOH A . F 5 HOH 181 882 239 HOH HOH A . F 5 HOH 182 883 245 HOH HOH A . F 5 HOH 183 884 251 HOH HOH A . F 5 HOH 184 885 252 HOH HOH A . F 5 HOH 185 886 253 HOH HOH A . F 5 HOH 186 887 255 HOH HOH A . F 5 HOH 187 888 265 HOH HOH A . F 5 HOH 188 889 266 HOH HOH A . F 5 HOH 189 890 267 HOH HOH A . F 5 HOH 190 891 269 HOH HOH A . F 5 HOH 191 892 273 HOH HOH A . F 5 HOH 192 893 274 HOH HOH A . F 5 HOH 193 894 276 HOH HOH A . F 5 HOH 194 895 277 HOH HOH A . F 5 HOH 195 896 281 HOH HOH A . F 5 HOH 196 897 283 HOH HOH A . F 5 HOH 197 898 284 HOH HOH A . F 5 HOH 198 899 285 HOH HOH A . F 5 HOH 199 900 289 HOH HOH A . F 5 HOH 200 901 291 HOH HOH A . F 5 HOH 201 902 292 HOH HOH A . F 5 HOH 202 903 293 HOH HOH A . F 5 HOH 203 904 294 HOH HOH A . F 5 HOH 204 905 296 HOH HOH A . F 5 HOH 205 906 300 HOH HOH A . F 5 HOH 206 907 304 HOH HOH A . F 5 HOH 207 908 306 HOH HOH A . F 5 HOH 208 909 313 HOH HOH A . F 5 HOH 209 910 322 HOH HOH A . F 5 HOH 210 911 323 HOH HOH A . F 5 HOH 211 912 326 HOH HOH A . F 5 HOH 212 913 328 HOH HOH A . F 5 HOH 213 914 331 HOH HOH A . F 5 HOH 214 915 334 HOH HOH A . F 5 HOH 215 916 340 HOH HOH A . F 5 HOH 216 917 342 HOH HOH A . F 5 HOH 217 918 349 HOH HOH A . F 5 HOH 218 919 357 HOH HOH A . F 5 HOH 219 920 360 HOH HOH A . F 5 HOH 220 921 364 HOH HOH A . F 5 HOH 221 922 366 HOH HOH A . F 5 HOH 222 923 368 HOH HOH A . F 5 HOH 223 924 380 HOH HOH A . F 5 HOH 224 925 381 HOH HOH A . F 5 HOH 225 926 385 HOH HOH A . F 5 HOH 226 927 390 HOH HOH A . F 5 HOH 227 928 396 HOH HOH A . F 5 HOH 228 929 408 HOH HOH A . F 5 HOH 229 930 429 HOH HOH A . F 5 HOH 230 931 447 HOH HOH A . F 5 HOH 231 932 465 HOH HOH A . F 5 HOH 232 933 491 HOH HOH A . F 5 HOH 233 934 493 HOH HOH A . F 5 HOH 234 935 519 HOH HOH A . F 5 HOH 235 936 548 HOH HOH A . F 5 HOH 236 937 550 HOH HOH A . F 5 HOH 237 938 553 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 REFMAC refinement 5.1 ? 4 # _cell.entry_id 1YU9 _cell.length_a 68.808 _cell.length_b 68.808 _cell.length_c 90.920 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YU9 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1YU9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.69 _exptl_crystal.density_percent_sol 54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'Ammonium sulfate, MES, Glycerol, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 300 mm plate' _diffrn_detector.pdbx_collection_date 2002-11-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'confocal blue optic device' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1YU9 _reflns.observed_criterion_sigma_F 1.0 _reflns.observed_criterion_sigma_I 1.0 _reflns.d_resolution_high 2.05 _reflns.d_resolution_low 50.0 _reflns.number_all ? _reflns.number_obs 13803 _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.078 _reflns.pdbx_netI_over_sigmaI 15.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.05 _reflns_shell.d_res_low 2.11 _reflns_shell.percent_possible_all 98.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.282 _reflns_shell.meanI_over_sigI_obs 4.1 _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2011 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1YU9 _refine.ls_d_res_high 2.07 _refine.ls_d_res_low 7.0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all 25209 _refine.ls_number_reflns_obs 12656 _refine.ls_number_reflns_R_free 665 _refine.ls_percent_reflns_obs 98.58 _refine.ls_R_factor_all 0.179 _refine.ls_R_factor_obs 0.1582 _refine.ls_R_factor_R_work 0.15631 _refine.ls_R_factor_R_free 0.19547 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'Rab3a polyalanine' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean 16.527 _refine.aniso_B[1][1] 0.15 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.15 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -0.30 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1384 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.number_atoms_solvent 237 _refine_hist.number_atoms_total 1664 _refine_hist.d_res_high 2.07 _refine_hist.d_res_low 7.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.222 ? ? ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.795 ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.016 ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.178 ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.098 ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.990 ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.071 ? ? ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 ? ? ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.204 ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other 0.182 ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.176 ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.081 ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.157 ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.037 ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.136 ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.186 ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.176 ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.876 ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other 0.115 ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.963 ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.543 ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 2.425 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.067 _refine_ls_shell.d_res_low 2.116 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.172 _refine_ls_shell.percent_reflns_obs 91.16 _refine_ls_shell.R_factor_R_free 0.225 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 52 _refine_ls_shell.number_reflns_obs 12780 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1YU9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YU9 _struct.title 'GppNHp-Bound Rab4A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YU9 _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'Rab GTPase, Rab4, vesicular trafficking, protein transport' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RAB4A_HUMAN _struct_ref.pdbx_db_accession P20338 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGA AGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEA FVQCARKILNK ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YU9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 175 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P20338 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 172 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 172 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YU9 GLY A 1 ? UNP P20338 ? ? 'cloning artifact' -2 1 1 1YU9 PRO A 2 ? UNP P20338 ? ? 'cloning artifact' -1 2 1 1YU9 LEU A 3 ? UNP P20338 ? ? 'cloning artifact' 0 3 1 1YU9 GLY A 4 ? UNP P20338 ? ? 'cloning artifact' 1 4 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 4020 ? 2 MORE -87 ? 2 'SSA (A^2)' 16400 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F 2 1,2 A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 68.8080000000 -1.0000000000 0.0000000000 0.0000000000 68.8080000000 0.0000000000 0.0000000000 -1.0000000000 45.4600000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 2 ? GLU A 6 ? PRO A -1 GLU A 3 5 ? 5 HELX_P HELX_P2 2 GLY A 23 ? LYS A 34 ? GLY A 20 LYS A 31 1 ? 12 HELX_P HELX_P3 3 GLN A 70 ? ARG A 72 ? GLN A 67 ARG A 69 5 ? 3 HELX_P HELX_P4 4 PHE A 73 ? ARG A 78 ? PHE A 70 ARG A 75 1 ? 6 HELX_P HELX_P5 5 SER A 79 ? ARG A 82 ? SER A 76 ARG A 79 5 ? 4 HELX_P HELX_P6 6 SER A 95 ? ALA A 101 ? SER A 92 ALA A 98 1 ? 7 HELX_P HELX_P7 7 ALA A 101 ? ALA A 113 ? ALA A 98 ALA A 110 1 ? 13 HELX_P HELX_P8 8 LEU A 128 ? ARG A 132 ? LEU A 125 ARG A 129 5 ? 5 HELX_P HELX_P9 9 THR A 135 ? ASN A 146 ? THR A 132 ASN A 143 1 ? 12 HELX_P HELX_P10 10 ASP A 160 ? ASN A 174 ? ASP A 157 ASN A 171 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 25 OG ? ? ? 1_555 B MG . MG ? ? A SER 22 A MG 701 1_555 ? ? ? ? ? ? ? 2.021 ? ? metalc2 metalc ? ? A THR 43 OG1 ? ? ? 1_555 B MG . MG ? ? A THR 40 A MG 701 1_555 ? ? ? ? ? ? ? 2.078 ? ? metalc3 metalc ? ? E GNP . O2G ? ? ? 1_555 B MG . MG ? ? A GNP 700 A MG 701 1_555 ? ? ? ? ? ? ? 1.953 ? ? metalc4 metalc ? ? E GNP . O2B ? ? ? 1_555 B MG . MG ? ? A GNP 700 A MG 701 1_555 ? ? ? ? ? ? ? 2.040 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 701 A HOH 706 1_555 ? ? ? ? ? ? ? 2.004 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 701 A HOH 716 1_555 ? ? ? ? ? ? ? 2.174 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 25 ? A SER 22 ? 1_555 MG ? B MG . ? A MG 701 ? 1_555 OG1 ? A THR 43 ? A THR 40 ? 1_555 82.9 ? 2 OG ? A SER 25 ? A SER 22 ? 1_555 MG ? B MG . ? A MG 701 ? 1_555 O2G ? E GNP . ? A GNP 700 ? 1_555 174.3 ? 3 OG1 ? A THR 43 ? A THR 40 ? 1_555 MG ? B MG . ? A MG 701 ? 1_555 O2G ? E GNP . ? A GNP 700 ? 1_555 91.8 ? 4 OG ? A SER 25 ? A SER 22 ? 1_555 MG ? B MG . ? A MG 701 ? 1_555 O2B ? E GNP . ? A GNP 700 ? 1_555 91.1 ? 5 OG1 ? A THR 43 ? A THR 40 ? 1_555 MG ? B MG . ? A MG 701 ? 1_555 O2B ? E GNP . ? A GNP 700 ? 1_555 173.0 ? 6 O2G ? E GNP . ? A GNP 700 ? 1_555 MG ? B MG . ? A MG 701 ? 1_555 O2B ? E GNP . ? A GNP 700 ? 1_555 94.0 ? 7 OG ? A SER 25 ? A SER 22 ? 1_555 MG ? B MG . ? A MG 701 ? 1_555 O ? F HOH . ? A HOH 706 ? 1_555 89.4 ? 8 OG1 ? A THR 43 ? A THR 40 ? 1_555 MG ? B MG . ? A MG 701 ? 1_555 O ? F HOH . ? A HOH 706 ? 1_555 90.4 ? 9 O2G ? E GNP . ? A GNP 700 ? 1_555 MG ? B MG . ? A MG 701 ? 1_555 O ? F HOH . ? A HOH 706 ? 1_555 92.9 ? 10 O2B ? E GNP . ? A GNP 700 ? 1_555 MG ? B MG . ? A MG 701 ? 1_555 O ? F HOH . ? A HOH 706 ? 1_555 93.2 ? 11 OG ? A SER 25 ? A SER 22 ? 1_555 MG ? B MG . ? A MG 701 ? 1_555 O ? F HOH . ? A HOH 716 ? 1_555 85.4 ? 12 OG1 ? A THR 43 ? A THR 40 ? 1_555 MG ? B MG . ? A MG 701 ? 1_555 O ? F HOH . ? A HOH 716 ? 1_555 92.1 ? 13 O2G ? E GNP . ? A GNP 700 ? 1_555 MG ? B MG . ? A MG 701 ? 1_555 O ? F HOH . ? A HOH 716 ? 1_555 92.6 ? 14 O2B ? E GNP . ? A GNP 700 ? 1_555 MG ? B MG . ? A MG 701 ? 1_555 O ? F HOH . ? A HOH 716 ? 1_555 83.7 ? 15 O ? F HOH . ? A HOH 706 ? 1_555 MG ? B MG . ? A MG 701 ? 1_555 O ? F HOH . ? A HOH 716 ? 1_555 173.9 ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 46 ? VAL A 55 ? VAL A 43 VAL A 52 A 2 LYS A 58 ? THR A 67 ? LYS A 55 THR A 64 A 3 PHE A 10 ? GLY A 18 ? PHE A 7 GLY A 15 A 4 GLY A 86 ? ASP A 92 ? GLY A 83 ASP A 89 A 5 VAL A 118 ? ASN A 124 ? VAL A 115 ASN A 121 A 6 MET A 149 ? GLU A 152 ? MET A 146 GLU A 149 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 49 ? N GLY A 46 O ILE A 64 ? O ILE A 61 A 2 3 O GLN A 63 ? O GLN A 60 N PHE A 14 ? N PHE A 11 A 3 4 N ILE A 17 ? N ILE A 14 O VAL A 90 ? O VAL A 87 A 4 5 N LEU A 89 ? N LEU A 86 O CYS A 122 ? O CYS A 119 A 5 6 N LEU A 121 ? N LEU A 118 O MET A 149 ? O MET A 146 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 701 ? 5 'BINDING SITE FOR RESIDUE MG A 701' AC2 Software A SO4 601 ? 5 'BINDING SITE FOR RESIDUE SO4 A 601' AC3 Software A SO4 602 ? 4 'BINDING SITE FOR RESIDUE SO4 A 602' AC4 Software A GNP 700 ? 28 'BINDING SITE FOR RESIDUE GNP A 700' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 SER A 25 ? SER A 22 . ? 1_555 ? 2 AC1 5 THR A 43 ? THR A 40 . ? 1_555 ? 3 AC1 5 GNP E . ? GNP A 700 . ? 1_555 ? 4 AC1 5 HOH F . ? HOH A 706 . ? 1_555 ? 5 AC1 5 HOH F . ? HOH A 716 . ? 1_555 ? 6 AC2 5 GLN A 70 ? GLN A 67 . ? 1_555 ? 7 AC2 5 GLU A 71 ? GLU A 68 . ? 1_555 ? 8 AC2 5 ARG A 72 ? ARG A 69 . ? 1_555 ? 9 AC2 5 HOH F . ? HOH A 776 . ? 8_665 ? 10 AC2 5 HOH F . ? HOH A 812 . ? 1_555 ? 11 AC3 4 GLY A 1 ? GLY A -2 . ? 8_665 ? 12 AC3 4 ARG A 72 ? ARG A 69 . ? 1_555 ? 13 AC3 4 HOH F . ? HOH A 730 . ? 1_555 ? 14 AC3 4 HOH F . ? HOH A 880 . ? 1_555 ? 15 AC4 28 ALA A 20 ? ALA A 17 . ? 1_555 ? 16 AC4 28 GLY A 21 ? GLY A 18 . ? 1_555 ? 17 AC4 28 THR A 22 ? THR A 19 . ? 1_555 ? 18 AC4 28 GLY A 23 ? GLY A 20 . ? 1_555 ? 19 AC4 28 LYS A 24 ? LYS A 21 . ? 1_555 ? 20 AC4 28 SER A 25 ? SER A 22 . ? 1_555 ? 21 AC4 28 CYS A 26 ? CYS A 23 . ? 1_555 ? 22 AC4 28 PHE A 36 ? PHE A 33 . ? 1_555 ? 23 AC4 28 SER A 40 ? SER A 37 . ? 1_555 ? 24 AC4 28 HIS A 42 ? HIS A 39 . ? 1_555 ? 25 AC4 28 THR A 43 ? THR A 40 . ? 1_555 ? 26 AC4 28 GLY A 69 ? GLY A 66 . ? 1_555 ? 27 AC4 28 ASN A 124 ? ASN A 121 . ? 1_555 ? 28 AC4 28 LYS A 125 ? LYS A 122 . ? 1_555 ? 29 AC4 28 ASP A 127 ? ASP A 124 . ? 1_555 ? 30 AC4 28 LEU A 128 ? LEU A 125 . ? 1_555 ? 31 AC4 28 SER A 154 ? SER A 151 . ? 1_555 ? 32 AC4 28 ALA A 155 ? ALA A 152 . ? 1_555 ? 33 AC4 28 LEU A 156 ? LEU A 153 . ? 1_555 ? 34 AC4 28 MG B . ? MG A 701 . ? 1_555 ? 35 AC4 28 HOH F . ? HOH A 706 . ? 1_555 ? 36 AC4 28 HOH F . ? HOH A 711 . ? 1_555 ? 37 AC4 28 HOH F . ? HOH A 713 . ? 1_555 ? 38 AC4 28 HOH F . ? HOH A 716 . ? 1_555 ? 39 AC4 28 HOH F . ? HOH A 782 . ? 1_555 ? 40 AC4 28 HOH F . ? HOH A 789 . ? 1_555 ? 41 AC4 28 HOH F . ? HOH A 804 . ? 1_555 ? 42 AC4 28 HOH F . ? HOH A 830 . ? 1_555 ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LEU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 125 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -99.95 _pdbx_validate_torsion.psi 53.73 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GNP PG P N N 137 GNP O1G O N N 138 GNP O2G O N N 139 GNP O3G O N N 140 GNP N3B N N N 141 GNP PB P N R 142 GNP O1B O N N 143 GNP O2B O N N 144 GNP O3A O N N 145 GNP PA P N S 146 GNP O1A O N N 147 GNP O2A O N N 148 GNP "O5'" O N N 149 GNP "C5'" C N N 150 GNP "C4'" C N R 151 GNP "O4'" O N N 152 GNP "C3'" C N S 153 GNP "O3'" O N N 154 GNP "C2'" C N R 155 GNP "O2'" O N N 156 GNP "C1'" C N R 157 GNP N9 N Y N 158 GNP C8 C Y N 159 GNP N7 N Y N 160 GNP C5 C Y N 161 GNP C6 C Y N 162 GNP O6 O N N 163 GNP N1 N Y N 164 GNP C2 C Y N 165 GNP N2 N N N 166 GNP N3 N Y N 167 GNP C4 C Y N 168 GNP HOG2 H N N 169 GNP HOG3 H N N 170 GNP HNB3 H N N 171 GNP HOB2 H N N 172 GNP HOA2 H N N 173 GNP "H5'2" H N N 174 GNP "H5'1" H N N 175 GNP "H4'" H N N 176 GNP "H3'" H N N 177 GNP "HO3'" H N N 178 GNP "H2'" H N N 179 GNP "HO2'" H N N 180 GNP "H1'" H N N 181 GNP H8 H N N 182 GNP HN1 H N N 183 GNP HN21 H N N 184 GNP HN22 H N N 185 HIS N N N N 186 HIS CA C N S 187 HIS C C N N 188 HIS O O N N 189 HIS CB C N N 190 HIS CG C Y N 191 HIS ND1 N Y N 192 HIS CD2 C Y N 193 HIS CE1 C Y N 194 HIS NE2 N Y N 195 HIS OXT O N N 196 HIS H H N N 197 HIS H2 H N N 198 HIS HA H N N 199 HIS HB2 H N N 200 HIS HB3 H N N 201 HIS HD1 H N N 202 HIS HD2 H N N 203 HIS HE1 H N N 204 HIS HE2 H N N 205 HIS HXT H N N 206 HOH O O N N 207 HOH H1 H N N 208 HOH H2 H N N 209 ILE N N N N 210 ILE CA C N S 211 ILE C C N N 212 ILE O O N N 213 ILE CB C N S 214 ILE CG1 C N N 215 ILE CG2 C N N 216 ILE CD1 C N N 217 ILE OXT O N N 218 ILE H H N N 219 ILE H2 H N N 220 ILE HA H N N 221 ILE HB H N N 222 ILE HG12 H N N 223 ILE HG13 H N N 224 ILE HG21 H N N 225 ILE HG22 H N N 226 ILE HG23 H N N 227 ILE HD11 H N N 228 ILE HD12 H N N 229 ILE HD13 H N N 230 ILE HXT H N N 231 LEU N N N N 232 LEU CA C N S 233 LEU C C N N 234 LEU O O N N 235 LEU CB C N N 236 LEU CG C N N 237 LEU CD1 C N N 238 LEU CD2 C N N 239 LEU OXT O N N 240 LEU H H N N 241 LEU H2 H N N 242 LEU HA H N N 243 LEU HB2 H N N 244 LEU HB3 H N N 245 LEU HG H N N 246 LEU HD11 H N N 247 LEU HD12 H N N 248 LEU HD13 H N N 249 LEU HD21 H N N 250 LEU HD22 H N N 251 LEU HD23 H N N 252 LEU HXT H N N 253 LYS N N N N 254 LYS CA C N S 255 LYS C C N N 256 LYS O O N N 257 LYS CB C N N 258 LYS CG C N N 259 LYS CD C N N 260 LYS CE C N N 261 LYS NZ N N N 262 LYS OXT O N N 263 LYS H H N N 264 LYS H2 H N N 265 LYS HA H N N 266 LYS HB2 H N N 267 LYS HB3 H N N 268 LYS HG2 H N N 269 LYS HG3 H N N 270 LYS HD2 H N N 271 LYS HD3 H N N 272 LYS HE2 H N N 273 LYS HE3 H N N 274 LYS HZ1 H N N 275 LYS HZ2 H N N 276 LYS HZ3 H N N 277 LYS HXT H N N 278 MET N N N N 279 MET CA C N S 280 MET C C N N 281 MET O O N N 282 MET CB C N N 283 MET CG C N N 284 MET SD S N N 285 MET CE C N N 286 MET OXT O N N 287 MET H H N N 288 MET H2 H N N 289 MET HA H N N 290 MET HB2 H N N 291 MET HB3 H N N 292 MET HG2 H N N 293 MET HG3 H N N 294 MET HE1 H N N 295 MET HE2 H N N 296 MET HE3 H N N 297 MET HXT H N N 298 MG MG MG N N 299 PHE N N N N 300 PHE CA C N S 301 PHE C C N N 302 PHE O O N N 303 PHE CB C N N 304 PHE CG C Y N 305 PHE CD1 C Y N 306 PHE CD2 C Y N 307 PHE CE1 C Y N 308 PHE CE2 C Y N 309 PHE CZ C Y N 310 PHE OXT O N N 311 PHE H H N N 312 PHE H2 H N N 313 PHE HA H N N 314 PHE HB2 H N N 315 PHE HB3 H N N 316 PHE HD1 H N N 317 PHE HD2 H N N 318 PHE HE1 H N N 319 PHE HE2 H N N 320 PHE HZ H N N 321 PHE HXT H N N 322 PRO N N N N 323 PRO CA C N S 324 PRO C C N N 325 PRO O O N N 326 PRO CB C N N 327 PRO CG C N N 328 PRO CD C N N 329 PRO OXT O N N 330 PRO H H N N 331 PRO HA H N N 332 PRO HB2 H N N 333 PRO HB3 H N N 334 PRO HG2 H N N 335 PRO HG3 H N N 336 PRO HD2 H N N 337 PRO HD3 H N N 338 PRO HXT H N N 339 SER N N N N 340 SER CA C N S 341 SER C C N N 342 SER O O N N 343 SER CB C N N 344 SER OG O N N 345 SER OXT O N N 346 SER H H N N 347 SER H2 H N N 348 SER HA H N N 349 SER HB2 H N N 350 SER HB3 H N N 351 SER HG H N N 352 SER HXT H N N 353 SO4 S S N N 354 SO4 O1 O N N 355 SO4 O2 O N N 356 SO4 O3 O N N 357 SO4 O4 O N N 358 THR N N N N 359 THR CA C N S 360 THR C C N N 361 THR O O N N 362 THR CB C N R 363 THR OG1 O N N 364 THR CG2 C N N 365 THR OXT O N N 366 THR H H N N 367 THR H2 H N N 368 THR HA H N N 369 THR HB H N N 370 THR HG1 H N N 371 THR HG21 H N N 372 THR HG22 H N N 373 THR HG23 H N N 374 THR HXT H N N 375 TRP N N N N 376 TRP CA C N S 377 TRP C C N N 378 TRP O O N N 379 TRP CB C N N 380 TRP CG C Y N 381 TRP CD1 C Y N 382 TRP CD2 C Y N 383 TRP NE1 N Y N 384 TRP CE2 C Y N 385 TRP CE3 C Y N 386 TRP CZ2 C Y N 387 TRP CZ3 C Y N 388 TRP CH2 C Y N 389 TRP OXT O N N 390 TRP H H N N 391 TRP H2 H N N 392 TRP HA H N N 393 TRP HB2 H N N 394 TRP HB3 H N N 395 TRP HD1 H N N 396 TRP HE1 H N N 397 TRP HE3 H N N 398 TRP HZ2 H N N 399 TRP HZ3 H N N 400 TRP HH2 H N N 401 TRP HXT H N N 402 TYR N N N N 403 TYR CA C N S 404 TYR C C N N 405 TYR O O N N 406 TYR CB C N N 407 TYR CG C Y N 408 TYR CD1 C Y N 409 TYR CD2 C Y N 410 TYR CE1 C Y N 411 TYR CE2 C Y N 412 TYR CZ C Y N 413 TYR OH O N N 414 TYR OXT O N N 415 TYR H H N N 416 TYR H2 H N N 417 TYR HA H N N 418 TYR HB2 H N N 419 TYR HB3 H N N 420 TYR HD1 H N N 421 TYR HD2 H N N 422 TYR HE1 H N N 423 TYR HE2 H N N 424 TYR HH H N N 425 TYR HXT H N N 426 VAL N N N N 427 VAL CA C N S 428 VAL C C N N 429 VAL O O N N 430 VAL CB C N N 431 VAL CG1 C N N 432 VAL CG2 C N N 433 VAL OXT O N N 434 VAL H H N N 435 VAL H2 H N N 436 VAL HA H N N 437 VAL HB H N N 438 VAL HG11 H N N 439 VAL HG12 H N N 440 VAL HG13 H N N 441 VAL HG21 H N N 442 VAL HG22 H N N 443 VAL HG23 H N N 444 VAL HXT H N N 445 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GNP PG O1G doub N N 129 GNP PG O2G sing N N 130 GNP PG O3G sing N N 131 GNP PG N3B sing N N 132 GNP O2G HOG2 sing N N 133 GNP O3G HOG3 sing N N 134 GNP N3B PB sing N N 135 GNP N3B HNB3 sing N N 136 GNP PB O1B doub N N 137 GNP PB O2B sing N N 138 GNP PB O3A sing N N 139 GNP O2B HOB2 sing N N 140 GNP O3A PA sing N N 141 GNP PA O1A doub N N 142 GNP PA O2A sing N N 143 GNP PA "O5'" sing N N 144 GNP O2A HOA2 sing N N 145 GNP "O5'" "C5'" sing N N 146 GNP "C5'" "C4'" sing N N 147 GNP "C5'" "H5'2" sing N N 148 GNP "C5'" "H5'1" sing N N 149 GNP "C4'" "O4'" sing N N 150 GNP "C4'" "C3'" sing N N 151 GNP "C4'" "H4'" sing N N 152 GNP "O4'" "C1'" sing N N 153 GNP "C3'" "O3'" sing N N 154 GNP "C3'" "C2'" sing N N 155 GNP "C3'" "H3'" sing N N 156 GNP "O3'" "HO3'" sing N N 157 GNP "C2'" "O2'" sing N N 158 GNP "C2'" "C1'" sing N N 159 GNP "C2'" "H2'" sing N N 160 GNP "O2'" "HO2'" sing N N 161 GNP "C1'" N9 sing N N 162 GNP "C1'" "H1'" sing N N 163 GNP N9 C8 sing Y N 164 GNP N9 C4 sing Y N 165 GNP C8 N7 doub Y N 166 GNP C8 H8 sing N N 167 GNP N7 C5 sing Y N 168 GNP C5 C6 sing Y N 169 GNP C5 C4 doub Y N 170 GNP C6 O6 doub N N 171 GNP C6 N1 sing Y N 172 GNP N1 C2 sing Y N 173 GNP N1 HN1 sing N N 174 GNP C2 N2 sing N N 175 GNP C2 N3 doub Y N 176 GNP N2 HN21 sing N N 177 GNP N2 HN22 sing N N 178 GNP N3 C4 sing Y N 179 HIS N CA sing N N 180 HIS N H sing N N 181 HIS N H2 sing N N 182 HIS CA C sing N N 183 HIS CA CB sing N N 184 HIS CA HA sing N N 185 HIS C O doub N N 186 HIS C OXT sing N N 187 HIS CB CG sing N N 188 HIS CB HB2 sing N N 189 HIS CB HB3 sing N N 190 HIS CG ND1 sing Y N 191 HIS CG CD2 doub Y N 192 HIS ND1 CE1 doub Y N 193 HIS ND1 HD1 sing N N 194 HIS CD2 NE2 sing Y N 195 HIS CD2 HD2 sing N N 196 HIS CE1 NE2 sing Y N 197 HIS CE1 HE1 sing N N 198 HIS NE2 HE2 sing N N 199 HIS OXT HXT sing N N 200 HOH O H1 sing N N 201 HOH O H2 sing N N 202 ILE N CA sing N N 203 ILE N H sing N N 204 ILE N H2 sing N N 205 ILE CA C sing N N 206 ILE CA CB sing N N 207 ILE CA HA sing N N 208 ILE C O doub N N 209 ILE C OXT sing N N 210 ILE CB CG1 sing N N 211 ILE CB CG2 sing N N 212 ILE CB HB sing N N 213 ILE CG1 CD1 sing N N 214 ILE CG1 HG12 sing N N 215 ILE CG1 HG13 sing N N 216 ILE CG2 HG21 sing N N 217 ILE CG2 HG22 sing N N 218 ILE CG2 HG23 sing N N 219 ILE CD1 HD11 sing N N 220 ILE CD1 HD12 sing N N 221 ILE CD1 HD13 sing N N 222 ILE OXT HXT sing N N 223 LEU N CA sing N N 224 LEU N H sing N N 225 LEU N H2 sing N N 226 LEU CA C sing N N 227 LEU CA CB sing N N 228 LEU CA HA sing N N 229 LEU C O doub N N 230 LEU C OXT sing N N 231 LEU CB CG sing N N 232 LEU CB HB2 sing N N 233 LEU CB HB3 sing N N 234 LEU CG CD1 sing N N 235 LEU CG CD2 sing N N 236 LEU CG HG sing N N 237 LEU CD1 HD11 sing N N 238 LEU CD1 HD12 sing N N 239 LEU CD1 HD13 sing N N 240 LEU CD2 HD21 sing N N 241 LEU CD2 HD22 sing N N 242 LEU CD2 HD23 sing N N 243 LEU OXT HXT sing N N 244 LYS N CA sing N N 245 LYS N H sing N N 246 LYS N H2 sing N N 247 LYS CA C sing N N 248 LYS CA CB sing N N 249 LYS CA HA sing N N 250 LYS C O doub N N 251 LYS C OXT sing N N 252 LYS CB CG sing N N 253 LYS CB HB2 sing N N 254 LYS CB HB3 sing N N 255 LYS CG CD sing N N 256 LYS CG HG2 sing N N 257 LYS CG HG3 sing N N 258 LYS CD CE sing N N 259 LYS CD HD2 sing N N 260 LYS CD HD3 sing N N 261 LYS CE NZ sing N N 262 LYS CE HE2 sing N N 263 LYS CE HE3 sing N N 264 LYS NZ HZ1 sing N N 265 LYS NZ HZ2 sing N N 266 LYS NZ HZ3 sing N N 267 LYS OXT HXT sing N N 268 MET N CA sing N N 269 MET N H sing N N 270 MET N H2 sing N N 271 MET CA C sing N N 272 MET CA CB sing N N 273 MET CA HA sing N N 274 MET C O doub N N 275 MET C OXT sing N N 276 MET CB CG sing N N 277 MET CB HB2 sing N N 278 MET CB HB3 sing N N 279 MET CG SD sing N N 280 MET CG HG2 sing N N 281 MET CG HG3 sing N N 282 MET SD CE sing N N 283 MET CE HE1 sing N N 284 MET CE HE2 sing N N 285 MET CE HE3 sing N N 286 MET OXT HXT sing N N 287 PHE N CA sing N N 288 PHE N H sing N N 289 PHE N H2 sing N N 290 PHE CA C sing N N 291 PHE CA CB sing N N 292 PHE CA HA sing N N 293 PHE C O doub N N 294 PHE C OXT sing N N 295 PHE CB CG sing N N 296 PHE CB HB2 sing N N 297 PHE CB HB3 sing N N 298 PHE CG CD1 doub Y N 299 PHE CG CD2 sing Y N 300 PHE CD1 CE1 sing Y N 301 PHE CD1 HD1 sing N N 302 PHE CD2 CE2 doub Y N 303 PHE CD2 HD2 sing N N 304 PHE CE1 CZ doub Y N 305 PHE CE1 HE1 sing N N 306 PHE CE2 CZ sing Y N 307 PHE CE2 HE2 sing N N 308 PHE CZ HZ sing N N 309 PHE OXT HXT sing N N 310 PRO N CA sing N N 311 PRO N CD sing N N 312 PRO N H sing N N 313 PRO CA C sing N N 314 PRO CA CB sing N N 315 PRO CA HA sing N N 316 PRO C O doub N N 317 PRO C OXT sing N N 318 PRO CB CG sing N N 319 PRO CB HB2 sing N N 320 PRO CB HB3 sing N N 321 PRO CG CD sing N N 322 PRO CG HG2 sing N N 323 PRO CG HG3 sing N N 324 PRO CD HD2 sing N N 325 PRO CD HD3 sing N N 326 PRO OXT HXT sing N N 327 SER N CA sing N N 328 SER N H sing N N 329 SER N H2 sing N N 330 SER CA C sing N N 331 SER CA CB sing N N 332 SER CA HA sing N N 333 SER C O doub N N 334 SER C OXT sing N N 335 SER CB OG sing N N 336 SER CB HB2 sing N N 337 SER CB HB3 sing N N 338 SER OG HG sing N N 339 SER OXT HXT sing N N 340 SO4 S O1 doub N N 341 SO4 S O2 doub N N 342 SO4 S O3 sing N N 343 SO4 S O4 sing N N 344 THR N CA sing N N 345 THR N H sing N N 346 THR N H2 sing N N 347 THR CA C sing N N 348 THR CA CB sing N N 349 THR CA HA sing N N 350 THR C O doub N N 351 THR C OXT sing N N 352 THR CB OG1 sing N N 353 THR CB CG2 sing N N 354 THR CB HB sing N N 355 THR OG1 HG1 sing N N 356 THR CG2 HG21 sing N N 357 THR CG2 HG22 sing N N 358 THR CG2 HG23 sing N N 359 THR OXT HXT sing N N 360 TRP N CA sing N N 361 TRP N H sing N N 362 TRP N H2 sing N N 363 TRP CA C sing N N 364 TRP CA CB sing N N 365 TRP CA HA sing N N 366 TRP C O doub N N 367 TRP C OXT sing N N 368 TRP CB CG sing N N 369 TRP CB HB2 sing N N 370 TRP CB HB3 sing N N 371 TRP CG CD1 doub Y N 372 TRP CG CD2 sing Y N 373 TRP CD1 NE1 sing Y N 374 TRP CD1 HD1 sing N N 375 TRP CD2 CE2 doub Y N 376 TRP CD2 CE3 sing Y N 377 TRP NE1 CE2 sing Y N 378 TRP NE1 HE1 sing N N 379 TRP CE2 CZ2 sing Y N 380 TRP CE3 CZ3 doub Y N 381 TRP CE3 HE3 sing N N 382 TRP CZ2 CH2 doub Y N 383 TRP CZ2 HZ2 sing N N 384 TRP CZ3 CH2 sing Y N 385 TRP CZ3 HZ3 sing N N 386 TRP CH2 HH2 sing N N 387 TRP OXT HXT sing N N 388 TYR N CA sing N N 389 TYR N H sing N N 390 TYR N H2 sing N N 391 TYR CA C sing N N 392 TYR CA CB sing N N 393 TYR CA HA sing N N 394 TYR C O doub N N 395 TYR C OXT sing N N 396 TYR CB CG sing N N 397 TYR CB HB2 sing N N 398 TYR CB HB3 sing N N 399 TYR CG CD1 doub Y N 400 TYR CG CD2 sing Y N 401 TYR CD1 CE1 sing Y N 402 TYR CD1 HD1 sing N N 403 TYR CD2 CE2 doub Y N 404 TYR CD2 HD2 sing N N 405 TYR CE1 CZ doub Y N 406 TYR CE1 HE1 sing N N 407 TYR CE2 CZ sing Y N 408 TYR CE2 HE2 sing N N 409 TYR CZ OH sing N N 410 TYR OH HH sing N N 411 TYR OXT HXT sing N N 412 VAL N CA sing N N 413 VAL N H sing N N 414 VAL N H2 sing N N 415 VAL CA C sing N N 416 VAL CA CB sing N N 417 VAL CA HA sing N N 418 VAL C O doub N N 419 VAL C OXT sing N N 420 VAL CB CG1 sing N N 421 VAL CB CG2 sing N N 422 VAL CB HB sing N N 423 VAL CG1 HG11 sing N N 424 VAL CG1 HG12 sing N N 425 VAL CG1 HG13 sing N N 426 VAL CG2 HG21 sing N N 427 VAL CG2 HG22 sing N N 428 VAL CG2 HG23 sing N N 429 VAL OXT HXT sing N N 430 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'Rab3a polyalanine' # _atom_sites.entry_id 1YU9 _atom_sites.fract_transf_matrix[1][1] 0.014533 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014533 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010999 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_