data_1YUI # _entry.id 1YUI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YUI pdb_00001yui 10.2210/pdb1yui/pdb WWPDB D_1000177448 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1YUJ _pdbx_database_related.details 'ENSEMBLE OF 50 STRUCTURES' _pdbx_database_related.content_type ensemble # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YUI _pdbx_database_status.recvd_initial_deposition_date 1996-12-31 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Clore, G.M.' 1 'Omichinski, J.G.' 2 'Gronenborn, A.M.' 3 # _citation.id primary _citation.title 'The solution structure of a specific GAGA factor-DNA complex reveals a modular binding mode.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 4 _citation.page_first 122 _citation.page_last 132 _citation.year 1997 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9033593 _citation.pdbx_database_id_DOI 10.1038/nsb0297-122 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Omichinski, J.G.' 1 ? primary 'Pedone, P.V.' 2 ? primary 'Felsenfeld, G.' 3 ? primary 'Gronenborn, A.M.' 4 ? primary 'Clore, G.M.' 5 ? # _cell.entry_id 1YUI _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YUI _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*CP*GP*AP*GP*AP*GP*TP*AP*C)-3') ; 3383.224 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*TP*AP*CP*TP*CP*TP*CP*GP*GP*C)-3') ; 3325.172 1 ? ? ? ? 3 polymer nat GAGA-FACTOR 6202.233 1 ? ? 'DNA BINDING DOMAIN, RESIDUES 310 - 372' ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DC)(DC)(DG)(DA)(DG)(DA)(DG)(DT)(DA)(DC)' GCCGAGAGTAC B ? 2 polydeoxyribonucleotide no no '(DG)(DT)(DA)(DC)(DT)(DC)(DT)(DC)(DG)(DG)(DC)' GTACTCTCGGC C ? 3 'polypeptide(L)' no no PKAKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV PKAKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DG n 1 7 DA n 1 8 DG n 1 9 DT n 1 10 DA n 1 11 DC n 2 1 DG n 2 2 DT n 2 3 DA n 2 4 DC n 2 5 DT n 2 6 DC n 2 7 DT n 2 8 DC n 2 9 DG n 2 10 DG n 2 11 DC n 3 1 PRO n 3 2 LYS n 3 3 ALA n 3 4 LYS n 3 5 ARG n 3 6 ALA n 3 7 LYS n 3 8 HIS n 3 9 PRO n 3 10 PRO n 3 11 GLY n 3 12 THR n 3 13 GLU n 3 14 LYS n 3 15 PRO n 3 16 ARG n 3 17 SER n 3 18 ARG n 3 19 SER n 3 20 GLN n 3 21 SER n 3 22 GLU n 3 23 GLN n 3 24 PRO n 3 25 ALA n 3 26 THR n 3 27 CYS n 3 28 PRO n 3 29 ILE n 3 30 CYS n 3 31 TYR n 3 32 ALA n 3 33 VAL n 3 34 ILE n 3 35 ARG n 3 36 GLN n 3 37 SER n 3 38 ARG n 3 39 ASN n 3 40 LEU n 3 41 ARG n 3 42 ARG n 3 43 HIS n 3 44 LEU n 3 45 GLU n 3 46 LEU n 3 47 ARG n 3 48 HIS n 3 49 PHE n 3 50 ALA n 3 51 LYS n 3 52 PRO n 3 53 GLY n 3 54 VAL n # _entity_src_nat.entity_id 3 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'fruit fly' _entity_src_nat.pdbx_organism_scientific 'Drosophila melanogaster' _entity_src_nat.pdbx_ncbi_taxonomy_id 7227 _entity_src_nat.genus Drosophila _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP GAGA_DROME Q08605 3 319 ? ? 2 PDB 1YUI 1YUI 1 ? ? ? 3 PDB 1YUI 1YUI 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1YUI A 1 ? 54 ? Q08605 319 ? 372 ? 10 63 2 2 1YUI B 1 ? 11 ? 1YUI 101 ? 111 ? 101 111 3 3 1YUI C 1 ? 11 ? 1YUI 112 ? 122 ? 112 122 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.type 'TRIPLE RESONANCE' _pdbx_nmr_exptl.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303.50 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 6.00 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 AMX500 Bruker 500 2 AMX600 Bruker 600 # _pdbx_nmr_refine.entry_id 1YUI _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;THE 3D STRUCTURE OF THE GAGA FACTOR/DNA COMPLEX WAS SOLVED BY MULTI-DIMENSIONAL HETERONUCLEAR-EDITED AND -FILTERED NMR AND IS BASED ON 1475 EXPERIMENTAL NMR RESTRAINTS: (A) INTRAPROTEIN: 188 SEQUENTIAL (|I- J|=1), 134 MEDIUM RANGE (1 < |I-J| <=5) AND 95 LONG RANGE (|I-J| >5) INTERRESIDUES AND 275 INTRARESIDUE APPROXIMATE INTERPROTON DISTANCE RESTRAINTS; 140 TORSION ANGLE RESTRAINTS; 33 THREE-BOND HN-HA COUPLING CONSTANT RESTRAINTS; AND 94 (48 CALPHA AND 46 CBETA) 13C SHIFT RESTRAINTS. (NUMBERS OF RESIDUES 10 - 61) (B) INTRA-DNA: 124 INTRARESIDUE, 112 SEQUENTIAL INTRASTRAND, 21 INTERSTRAND INTERPROTON DISTANCE RESTRAINTS; 102 TORSION ANGLE RESTRAINTS (FOR ALPHA, BETA, GAMMA, DELTA, EPSILON AND AND ZETA BACKBONE TORSION ANGLES). (C) INTERMOLECULAR: 75 INTERPROTON DISTANCE RESTRAINTS. THE EXPERIMENTAL NMR RESTRAINTS ARE SUPPLEMENTED BY HYDROGEN BONDING RESTRAINTS: 24 DISTANCES FOR 12 BACKBONE HYDROGEN BONDS WITHIN THE PROTEIN, 58 DISTANCES FOR WATSON-CRICK BASE-PAIRING WITHIN THE DNA, AND 10 AMBIGUOUS DISTANCE RESTRAINTS BETWEEN THE PROTEIN AND THE DNA. THE RESTRAINTS HAVE BEEN DEPOSITED. THE STRUCTURES WERE CALCULATED USING THE SIMULATED ANNEALING PROTOCOL OF NILGES ET AL. (1988) FEBS LETT. 229, 129-136 USING THE PROGRAM X-PLOR 3.1 (BRUNGER) MODIFIED TO INCORPORATE COUPLING CONSTANT (GARRETT ET AL. (1984) J. MAGN. RESON. SERIES B 104, 99-103) AND CARBON CHEMICAL SHIFT (KUSZEWSKI ET AL. (1995) J. MAGN. RESON. SERIES B 106, 92-96) RESTRAINTS, AND A CONFORMATIONAL DATABASE POTENTIAL (KUSZEWSKI ET AL.(1996) PROTEIN SCI. 5, 1067-1080 THE RESTRAINED REGULARIZED MEAN STRUCTURE IS PRESENTED IN THIS ENTRY AND 50 STRUCTURES ARE PRESENTED IN ENTRY 1YUJ. IN THE RESTRAINED REGULARIZED MEAN COORDINATES THE LAST COLUMN REPRESENTS THE AVERAGE RMS DIFFERENCE BETWEEN THE INDIVIDUAL SIMULATED ANNEALING STRUCTURES AND THE MEAN COORDINATE POSITIONS. THE LAST COLUMN IN THE INDIVIDUAL SA STRUCTURES HAS NO MEANING. BEST FITTING TO GENERATE THE AVERAGE STRUCTURE IS WITH RESPECT TO RESIDUES 14 - 58 OF THE PROTEIN AND BASE PAIRS 1 - 11 OF THE DNA (RESIDUES 10 - 13 AND 59 - 61 ARE DISORDERED IN SOLUTION). RESIDUE 10 CORRESPONDS TO RESIDUE 319 OF THE NATURAL SEQUENCE. NOTE THE OCCUPANCY FIELD HAS NO MEANING. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1YUI _pdbx_nmr_details.text ;TRIPLE RESONANCE FOR ASSIGNMENT OF PROTEIN 12C- FILTERED NOE, 12C-FILTERED HOHAHA AND 1H-1H NOE FOR DNA. QUANTITATIVE J CORRELATION FOR COUPLING CONSTANTS 3D 15N- SEPARATED, 3D 13C-SEPARATED, 3D 12C-FILTERED 3D 13C- SEPARATED/12C-FILTERED, AND 2D 1H-1H NOE EXPERIMENTS. ; # _pdbx_nmr_ensemble.entry_id 1YUI _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'REGULARIZED MEAN STRUCTURE' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal 'structure solution' 'X-PLOR (SEE ABOVE)' ? ? 1 refinement 'X-PLOR (SEE ABOVE)' ? ? 2 # _exptl.entry_id 1YUI _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1YUI _struct.title 'SOLUTION NMR STRUCTURE OF THE GAGA FACTOR/DNA COMPLEX, REGULARIZED MEAN STRUCTURE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YUI _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'COMPLEX (DNA-BINDING PROTEIN-DNA), CHROMATIN REMODELING, DNA BINDING PROTEIN-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG C 16 ? SER C 19 ? ARG A 25 SER A 28 1 ? 4 HELX_P HELX_P2 2 SER C 37 ? ARG C 47 ? SER A 46 ARG A 56 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C CYS 27 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 36 A ZN 64 1_555 ? ? ? ? ? ? ? 2.299 ? ? metalc2 metalc ? ? C CYS 30 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 39 A ZN 64 1_555 ? ? ? ? ? ? ? 2.312 ? ? metalc3 metalc ? ? C HIS 43 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 52 A ZN 64 1_555 ? ? ? ? ? ? ? 2.000 ? ? metalc4 metalc ? ? C HIS 48 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 57 A ZN 64 1_555 ? ? ? ? ? ? ? 2.012 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 11 N3 ? ? B DG 101 C DC 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 11 O2 ? ? B DG 101 C DC 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 11 N4 ? ? B DG 101 C DC 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 10 N1 ? ? B DC 102 C DG 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 10 O6 ? ? B DC 102 C DG 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 10 N2 ? ? B DC 102 C DG 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 9 N1 ? ? B DC 103 C DG 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 9 O6 ? ? B DC 103 C DG 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 9 N2 ? ? B DC 103 C DG 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 8 N3 ? ? B DG 104 C DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 8 O2 ? ? B DG 104 C DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 8 N4 ? ? B DG 104 C DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 7 N3 ? ? B DA 105 C DT 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 7 O4 ? ? B DA 105 C DT 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 6 N3 ? ? B DG 106 C DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 6 O2 ? ? B DG 106 C DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 6 N4 ? ? B DG 106 C DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 5 N3 ? ? B DA 107 C DT 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 5 O4 ? ? B DA 107 C DT 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 4 N3 ? ? B DG 108 C DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 4 O2 ? ? B DG 108 C DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 4 N4 ? ? B DG 108 C DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 3 N1 ? ? B DT 109 C DA 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 3 N6 ? ? B DT 109 C DA 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 2 N3 ? ? B DA 110 C DT 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 2 O4 ? ? B DA 110 C DT 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 1 N1 ? ? B DC 111 C DG 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 1 O6 ? ? B DC 111 C DG 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 1 N2 ? ? B DC 111 C DG 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA C 25 ? THR C 26 ? ALA A 34 THR A 35 A 2 VAL C 33 ? ILE C 34 ? VAL A 42 ILE A 43 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id O _pdbx_struct_sheet_hbond.range_1_label_comp_id ALA _pdbx_struct_sheet_hbond.range_1_label_asym_id C _pdbx_struct_sheet_hbond.range_1_label_seq_id 25 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id O _pdbx_struct_sheet_hbond.range_1_auth_comp_id ALA _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 34 _pdbx_struct_sheet_hbond.range_2_label_atom_id N _pdbx_struct_sheet_hbond.range_2_label_comp_id ILE _pdbx_struct_sheet_hbond.range_2_label_asym_id C _pdbx_struct_sheet_hbond.range_2_label_seq_id 34 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id N _pdbx_struct_sheet_hbond.range_2_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 43 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ZN _struct_site.pdbx_auth_seq_id 64 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 64' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS C 27 ? CYS A 36 . ? 1_555 ? 2 AC1 4 CYS C 30 ? CYS A 39 . ? 1_555 ? 3 AC1 4 HIS C 43 ? HIS A 52 . ? 1_555 ? 4 AC1 4 HIS C 48 ? HIS A 57 . ? 1_555 ? # _database_PDB_matrix.entry_id 1YUI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1YUI _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 101 101 DG G B . n A 1 2 DC 2 102 102 DC C B . n A 1 3 DC 3 103 103 DC C B . n A 1 4 DG 4 104 104 DG G B . n A 1 5 DA 5 105 105 DA A B . n A 1 6 DG 6 106 106 DG G B . n A 1 7 DA 7 107 107 DA A B . n A 1 8 DG 8 108 108 DG G B . n A 1 9 DT 9 109 109 DT T B . n A 1 10 DA 10 110 110 DA A B . n A 1 11 DC 11 111 111 DC C B . n B 2 1 DG 1 112 112 DG G C . n B 2 2 DT 2 113 113 DT T C . n B 2 3 DA 3 114 114 DA A C . n B 2 4 DC 4 115 115 DC C C . n B 2 5 DT 5 116 116 DT T C . n B 2 6 DC 6 117 117 DC C C . n B 2 7 DT 7 118 118 DT T C . n B 2 8 DC 8 119 119 DC C C . n B 2 9 DG 9 120 120 DG G C . n B 2 10 DG 10 121 121 DG G C . n B 2 11 DC 11 122 122 DC C C . n C 3 1 PRO 1 10 10 PRO PRO A . n C 3 2 LYS 2 11 11 LYS LYS A . n C 3 3 ALA 3 12 12 ALA ALA A . n C 3 4 LYS 4 13 13 LYS LYS A . n C 3 5 ARG 5 14 14 ARG ARG A . n C 3 6 ALA 6 15 15 ALA ALA A . n C 3 7 LYS 7 16 16 LYS LYS A . n C 3 8 HIS 8 17 17 HIS HIS A . n C 3 9 PRO 9 18 18 PRO PRO A . n C 3 10 PRO 10 19 19 PRO PRO A . n C 3 11 GLY 11 20 20 GLY GLY A . n C 3 12 THR 12 21 21 THR THR A . n C 3 13 GLU 13 22 22 GLU GLU A . n C 3 14 LYS 14 23 23 LYS LYS A . n C 3 15 PRO 15 24 24 PRO PRO A . n C 3 16 ARG 16 25 25 ARG ARG A . n C 3 17 SER 17 26 26 SER SER A . n C 3 18 ARG 18 27 27 ARG ARG A . n C 3 19 SER 19 28 28 SER SER A . n C 3 20 GLN 20 29 29 GLN GLN A . n C 3 21 SER 21 30 30 SER SER A . n C 3 22 GLU 22 31 31 GLU GLU A . n C 3 23 GLN 23 32 32 GLN GLN A . n C 3 24 PRO 24 33 33 PRO PRO A . n C 3 25 ALA 25 34 34 ALA ALA A . n C 3 26 THR 26 35 35 THR THR A . n C 3 27 CYS 27 36 36 CYS CYS A . n C 3 28 PRO 28 37 37 PRO PRO A . n C 3 29 ILE 29 38 38 ILE ILE A . n C 3 30 CYS 30 39 39 CYS CYS A . n C 3 31 TYR 31 40 40 TYR TYR A . n C 3 32 ALA 32 41 41 ALA ALA A . n C 3 33 VAL 33 42 42 VAL VAL A . n C 3 34 ILE 34 43 43 ILE ILE A . n C 3 35 ARG 35 44 44 ARG ARG A . n C 3 36 GLN 36 45 45 GLN GLN A . n C 3 37 SER 37 46 46 SER SER A . n C 3 38 ARG 38 47 47 ARG ARG A . n C 3 39 ASN 39 48 48 ASN ASN A . n C 3 40 LEU 40 49 49 LEU LEU A . n C 3 41 ARG 41 50 50 ARG ARG A . n C 3 42 ARG 42 51 51 ARG ARG A . n C 3 43 HIS 43 52 52 HIS HIS A . n C 3 44 LEU 44 53 53 LEU LEU A . n C 3 45 GLU 45 54 54 GLU GLU A . n C 3 46 LEU 46 55 55 LEU LEU A . n C 3 47 ARG 47 56 56 ARG ARG A . n C 3 48 HIS 48 57 57 HIS HIS A . n C 3 49 PHE 49 58 58 PHE PHE A . n C 3 50 ALA 50 59 59 ALA ALA A . n C 3 51 LYS 51 60 60 LYS LYS A . n C 3 52 PRO 52 61 61 PRO PRO A . n C 3 53 GLY 53 62 62 GLY GLY A . n C 3 54 VAL 54 63 63 VAL VAL A . n # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id ZN _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 64 _pdbx_nonpoly_scheme.auth_seq_num 64 _pdbx_nonpoly_scheme.pdb_mon_id ZN _pdbx_nonpoly_scheme.auth_mon_id ZN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? C CYS 27 ? A CYS 36 ? 1_555 ZN ? D ZN . ? A ZN 64 ? 1_555 SG ? C CYS 30 ? A CYS 39 ? 1_555 107.3 ? 2 SG ? C CYS 27 ? A CYS 36 ? 1_555 ZN ? D ZN . ? A ZN 64 ? 1_555 NE2 ? C HIS 43 ? A HIS 52 ? 1_555 106.2 ? 3 SG ? C CYS 30 ? A CYS 39 ? 1_555 ZN ? D ZN . ? A ZN 64 ? 1_555 NE2 ? C HIS 43 ? A HIS 52 ? 1_555 107.5 ? 4 SG ? C CYS 27 ? A CYS 36 ? 1_555 ZN ? D ZN . ? A ZN 64 ? 1_555 NE2 ? C HIS 48 ? A HIS 57 ? 1_555 107.3 ? 5 SG ? C CYS 30 ? A CYS 39 ? 1_555 ZN ? D ZN . ? A ZN 64 ? 1_555 NE2 ? C HIS 48 ? A HIS 57 ? 1_555 121.4 ? 6 NE2 ? C HIS 43 ? A HIS 52 ? 1_555 ZN ? D ZN . ? A ZN 64 ? 1_555 NE2 ? C HIS 48 ? A HIS 57 ? 1_555 106.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-12-31 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.1 ? 1 X-PLOR refinement 3.1 ? 2 X-PLOR phasing 3.1 ? 3 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DG 101 ? ? "C1'" B DG 101 ? ? N9 B DG 101 ? ? 110.39 108.30 2.09 0.30 N 2 1 "O4'" B DC 102 ? ? "C1'" B DC 102 ? ? N1 B DC 102 ? ? 110.41 108.30 2.11 0.30 N 3 1 "O4'" B DC 103 ? ? "C1'" B DC 103 ? ? N1 B DC 103 ? ? 110.58 108.30 2.28 0.30 N 4 1 "O4'" B DG 104 ? ? "C1'" B DG 104 ? ? N9 B DG 104 ? ? 110.75 108.30 2.45 0.30 N 5 1 "O4'" B DA 105 ? ? "C1'" B DA 105 ? ? N9 B DA 105 ? ? 111.42 108.30 3.12 0.30 N 6 1 "O4'" B DG 106 ? ? "C1'" B DG 106 ? ? N9 B DG 106 ? ? 110.64 108.30 2.34 0.30 N 7 1 "O4'" B DA 107 ? ? "C1'" B DA 107 ? ? N9 B DA 107 ? ? 110.61 108.30 2.31 0.30 N 8 1 "O4'" B DG 108 ? ? "C1'" B DG 108 ? ? N9 B DG 108 ? ? 111.43 108.30 3.13 0.30 N 9 1 "O4'" B DT 109 ? ? "C1'" B DT 109 ? ? N1 B DT 109 ? ? 110.37 108.30 2.07 0.30 N 10 1 "O4'" B DA 110 ? ? "C1'" B DA 110 ? ? N9 B DA 110 ? ? 110.47 108.30 2.17 0.30 N 11 1 "O4'" B DC 111 ? ? "C1'" B DC 111 ? ? N1 B DC 111 ? ? 110.90 108.30 2.60 0.30 N 12 1 "O4'" C DG 112 ? ? "C1'" C DG 112 ? ? N9 C DG 112 ? ? 110.83 108.30 2.53 0.30 N 13 1 "O4'" C DT 113 ? ? "C1'" C DT 113 ? ? N1 C DT 113 ? ? 110.51 108.30 2.21 0.30 N 14 1 C6 C DT 113 ? ? C5 C DT 113 ? ? C7 C DT 113 ? ? 119.18 122.90 -3.72 0.60 N 15 1 "O4'" C DA 114 ? ? "C1'" C DA 114 ? ? N9 C DA 114 ? ? 110.90 108.30 2.60 0.30 N 16 1 "O4'" C DC 115 ? ? "C1'" C DC 115 ? ? N1 C DC 115 ? ? 110.14 108.30 1.84 0.30 N 17 1 "O4'" C DT 116 ? ? "C1'" C DT 116 ? ? N1 C DT 116 ? ? 110.20 108.30 1.90 0.30 N 18 1 "O4'" C DC 117 ? ? "C1'" C DC 117 ? ? N1 C DC 117 ? ? 111.42 108.30 3.12 0.30 N 19 1 "O4'" C DT 118 ? ? "C1'" C DT 118 ? ? N1 C DT 118 ? ? 111.58 108.30 3.28 0.30 N 20 1 "O4'" C DC 119 ? ? "C1'" C DC 119 ? ? N1 C DC 119 ? ? 110.75 108.30 2.45 0.30 N 21 1 "O4'" C DG 120 ? ? "C1'" C DG 120 ? ? N9 C DG 120 ? ? 110.98 108.30 2.68 0.30 N 22 1 "O4'" C DG 121 ? ? "C1'" C DG 121 ? ? N9 C DG 121 ? ? 110.58 108.30 2.28 0.30 N 23 1 "O4'" C DC 122 ? ? "C1'" C DC 122 ? ? N1 C DC 122 ? ? 110.29 108.30 1.99 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 12 ? ? -159.26 76.32 2 1 LYS A 23 ? ? -104.38 76.45 3 1 PRO A 33 ? ? -37.70 152.93 4 1 TYR A 40 ? ? 52.98 17.58 5 1 HIS A 57 ? ? -152.68 -73.20 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1YUI 'double helix' 1YUI 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 11 1_555 -0.253 -0.087 0.008 0.251 -0.002 -1.538 1 B_DG101:DC122_C B 101 ? C 122 ? 19 1 1 A DC 2 1_555 B DG 10 1_555 0.566 -0.254 -0.005 3.258 -3.367 -4.259 2 B_DC102:DG121_C B 102 ? C 121 ? 19 1 1 A DC 3 1_555 B DG 9 1_555 -0.067 -0.015 -0.021 14.535 -13.276 3.061 3 B_DC103:DG120_C B 103 ? C 120 ? 19 1 1 A DG 4 1_555 B DC 8 1_555 -0.053 -0.155 -0.730 1.234 -4.368 3.799 4 B_DG104:DC119_C B 104 ? C 119 ? 19 1 1 A DA 5 1_555 B DT 7 1_555 0.264 -0.111 -0.534 15.663 -8.308 5.158 5 B_DA105:DT118_C B 105 ? C 118 ? 20 1 1 A DG 6 1_555 B DC 6 1_555 -0.538 -0.146 0.276 11.249 -13.391 5.474 6 B_DG106:DC117_C B 106 ? C 117 ? 19 1 1 A DA 7 1_555 B DT 5 1_555 -0.145 -0.084 -0.218 11.801 -16.773 7.032 7 B_DA107:DT116_C B 107 ? C 116 ? 20 1 1 A DG 8 1_555 B DC 4 1_555 -0.065 -0.380 -1.356 -16.312 -15.461 0.475 8 B_DG108:DC115_C B 108 ? C 115 ? 19 1 1 A DT 9 1_555 B DA 3 1_555 -0.525 0.029 -0.029 -10.863 -5.357 -1.873 9 B_DT109:DA114_C B 109 ? C 114 ? 20 1 1 A DA 10 1_555 B DT 2 1_555 0.176 -0.038 0.270 7.332 -5.411 -2.150 10 B_DA110:DT113_C B 110 ? C 113 ? 20 1 1 A DC 11 1_555 B DG 1 1_555 -0.174 -0.028 -0.055 0.297 0.906 2.143 11 B_DC111:DG112_C B 111 ? C 112 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 11 1_555 A DC 2 1_555 B DG 10 1_555 -0.049 0.861 4.204 0.468 -8.634 36.288 2.785 0.155 3.904 -13.625 -0.739 37.270 1 BB_DG101DC102:DG121DC122_CC B 101 ? C 122 ? B 102 ? C 121 ? 1 A DC 2 1_555 B DG 10 1_555 A DC 3 1_555 B DG 9 1_555 0.701 -0.226 3.170 2.616 -6.321 32.504 0.648 -0.795 3.201 -11.139 -4.611 33.197 2 BB_DC102DC103:DG120DG121_CC B 102 ? C 121 ? B 103 ? C 120 ? 1 A DC 3 1_555 B DG 9 1_555 A DG 4 1_555 B DC 8 1_555 -0.136 0.342 4.237 1.638 8.707 35.479 -1.027 0.513 4.192 14.019 -2.637 36.534 3 BB_DC103DG104:DC119DG120_CC B 103 ? C 120 ? B 104 ? C 119 ? 1 A DG 4 1_555 B DC 8 1_555 A DA 5 1_555 B DT 7 1_555 0.148 0.194 3.058 -1.351 0.759 31.502 0.225 -0.508 3.053 1.398 2.487 31.539 4 BB_DG104DA105:DT118DC119_CC B 104 ? C 119 ? B 105 ? C 118 ? 1 A DA 5 1_555 B DT 7 1_555 A DG 6 1_555 B DC 6 1_555 -0.831 -0.254 3.999 -5.131 -0.418 36.058 -0.334 0.446 4.077 -0.671 8.237 36.412 5 BB_DA105DG106:DC117DT118_CC B 105 ? C 118 ? B 106 ? C 117 ? 1 A DG 6 1_555 B DC 6 1_555 A DA 7 1_555 B DT 5 1_555 0.074 0.532 3.751 3.680 -1.957 35.833 1.177 0.477 3.707 -3.168 -5.956 36.067 6 BB_DG106DA107:DT116DC117_CC B 106 ? C 117 ? B 107 ? C 116 ? 1 A DA 7 1_555 B DT 5 1_555 A DG 8 1_555 B DC 4 1_555 -0.663 0.703 4.823 2.495 20.520 34.461 -2.596 1.409 4.484 31.388 -3.817 40.023 7 BB_DA107DG108:DC115DT116_CC B 107 ? C 116 ? B 108 ? C 115 ? 1 A DG 8 1_555 B DC 4 1_555 A DT 9 1_555 B DA 3 1_555 -0.040 -0.124 3.488 -5.541 -8.765 34.989 1.108 -0.762 3.388 -14.197 8.975 36.447 8 BB_DG108DT109:DA114DC115_CC B 108 ? C 115 ? B 109 ? C 114 ? 1 A DT 9 1_555 B DA 3 1_555 A DA 10 1_555 B DT 2 1_555 -0.215 0.633 2.955 -1.765 1.389 36.517 0.834 0.122 2.983 2.214 2.814 36.583 9 BB_DT109DA110:DT113DA114_CC B 109 ? C 114 ? B 110 ? C 113 ? 1 A DA 10 1_555 B DT 2 1_555 A DC 11 1_555 B DG 1 1_555 0.630 0.241 4.534 -0.218 -7.593 30.023 2.474 -1.238 4.340 -14.370 0.413 30.948 10 BB_DA110DC111:DG112DT113_CC B 110 ? C 113 ? B 111 ? C 112 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #