HEADER TRANSFERASE 15-FEB-05 1YVK TITLE CRYSTAL STRUCTURE OF THE BACILLIS SUBTILIS ACETYLTRANSFERASE IN TITLE 2 COMPLEX WITH COA, NORTHEAST STRUCTURAL GENOMICS TARGET SR237. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN BSU33890; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: SUBSP. SUBTILIS STR. 168; SOURCE 5 GENE: YVBK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BL21 KEYWDS ALPHS-BETA PROTEIN, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.FOROUHAR,W.YONG,R.XIAO,M.CIANO,T.B.ACTON,G.T.MONTELIONE,J.F.HUNT, AUTHOR 2 L.TONG,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 11-OCT-17 1YVK 1 REMARK REVDAT 3 24-FEB-09 1YVK 1 VERSN REVDAT 2 05-APR-05 1YVK 1 AUTHOR REVDAT 1 22-FEB-05 1YVK 0 JRNL AUTH F.FOROUHAR,W.YONG,R.XIAO,M.CIANO,T.B.ACTON,G.T.MONTELIONE, JRNL AUTH 2 J.F.HUNT,L.TONG JRNL TITL CRYSTAL STRUCTURE OF THE BACILLIS SUBTILIS ACETYLTRANSFERASE JRNL TITL 2 IN COMPLEX WITH COA, NORTHEAST STRUCTURAL GENOMICS TARGET JRNL TITL 3 SR237. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 128262.730 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 76.3 REMARK 3 NUMBER OF REFLECTIONS : 23509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2280 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 38.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1799 REMARK 3 BIN R VALUE (WORKING SET) : 0.3820 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 170 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4884 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 192 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 44.32000 REMARK 3 B22 (A**2) : -11.56000 REMARK 3 B33 (A**2) : -32.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM SIGMAA (A) : 0.79 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.51 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.87 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.620 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.28 REMARK 3 BSOL : 10.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YVK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97927 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29334 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 14.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.44800 REMARK 200 R SYM FOR SHELL (I) : 0.34300 REMARK 200 FOR SHELL : 2.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SNB, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL (PH 8.5), 20% PEG 4K, REMARK 280 200 MM SODIUM ACETATE, 100 MM AMMONIUM SULFATE, 2 MM ACETYL-COA, REMARK 280 AND 5 MM DTT., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.47100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 108.47100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.79800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.21250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.79800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.21250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.47100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.79800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.21250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.47100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.79800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.21250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 MSE A 3 REMARK 465 GLN A 4 REMARK 465 GLU A 157 REMARK 465 HIS A 158 REMARK 465 HIS A 159 REMARK 465 HIS A 160 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 MSE B 1 REMARK 465 ASN B 2 REMARK 465 MSE B 3 REMARK 465 GLN B 4 REMARK 465 GLU B 157 REMARK 465 HIS B 158 REMARK 465 HIS B 159 REMARK 465 HIS B 160 REMARK 465 HIS B 161 REMARK 465 HIS B 162 REMARK 465 HIS B 163 REMARK 465 MSE C 1 REMARK 465 ASN C 2 REMARK 465 MSE C 3 REMARK 465 GLN C 4 REMARK 465 GLU C 157 REMARK 465 HIS C 158 REMARK 465 HIS C 159 REMARK 465 HIS C 160 REMARK 465 HIS C 161 REMARK 465 HIS C 162 REMARK 465 HIS C 163 REMARK 465 MSE D 1 REMARK 465 ASN D 2 REMARK 465 MSE D 3 REMARK 465 GLN D 4 REMARK 465 GLU D 157 REMARK 465 HIS D 158 REMARK 465 HIS D 159 REMARK 465 HIS D 160 REMARK 465 HIS D 161 REMARK 465 HIS D 162 REMARK 465 HIS D 163 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 48 OD2 ASP A 48 3656 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 12 -17.40 -142.15 REMARK 500 SER A 28 101.93 -59.45 REMARK 500 ALA A 46 75.98 -118.61 REMARK 500 THR A 59 -107.06 -100.69 REMARK 500 GLN A 62 7.55 58.73 REMARK 500 ILE A 102 139.07 178.47 REMARK 500 GLN A 123 -69.08 -95.11 REMARK 500 ASP A 128 7.72 56.00 REMARK 500 LEU A 153 111.55 -168.58 REMARK 500 LEU A 155 77.24 -112.11 REMARK 500 GLU B 12 -15.74 -143.11 REMARK 500 ALA B 46 74.25 -117.89 REMARK 500 THR B 59 -106.40 -100.89 REMARK 500 GLN B 62 8.48 58.09 REMARK 500 ILE B 102 139.06 177.80 REMARK 500 SER B 108 69.38 -69.96 REMARK 500 GLN B 123 -69.28 -93.34 REMARK 500 ASP B 128 5.57 59.49 REMARK 500 PHE B 129 -70.03 -42.38 REMARK 500 LEU B 153 111.48 -169.24 REMARK 500 LEU B 155 75.43 -112.72 REMARK 500 GLU C 12 -16.86 -143.23 REMARK 500 SER C 28 103.21 -58.95 REMARK 500 ALA C 46 73.65 -118.97 REMARK 500 THR C 59 -107.30 -101.37 REMARK 500 GLN C 62 8.71 58.31 REMARK 500 ILE C 102 139.21 179.72 REMARK 500 SER C 108 67.64 -69.87 REMARK 500 GLN C 123 -67.56 -94.24 REMARK 500 ASP C 128 8.74 58.06 REMARK 500 LEU C 153 112.11 -168.32 REMARK 500 LEU C 155 77.03 -112.42 REMARK 500 GLU D 12 -16.90 -143.10 REMARK 500 ALA D 46 74.75 -118.47 REMARK 500 THR D 59 -106.39 -101.62 REMARK 500 GLN D 62 6.20 58.82 REMARK 500 ILE D 102 139.15 178.30 REMARK 500 SER D 108 69.62 -69.33 REMARK 500 GLN D 123 -70.80 -93.84 REMARK 500 ASP D 128 6.77 59.05 REMARK 500 LEU D 153 113.23 -167.91 REMARK 500 LEU D 155 75.42 -110.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA D 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SR237 RELATED DB: TARGETDB DBREF 1YVK A 1 155 UNP O32248 O32248_BACSU 1 155 DBREF 1YVK B 1 155 UNP O32248 O32248_BACSU 1 155 DBREF 1YVK C 1 155 UNP O32248 O32248_BACSU 1 155 DBREF 1YVK D 1 155 UNP O32248 O32248_BACSU 1 155 SEQADV 1YVK MSE A 1 UNP O32248 MET 1 MODIFIED RESIDUE SEQADV 1YVK MSE A 3 UNP O32248 MET 3 MODIFIED RESIDUE SEQADV 1YVK MSE A 148 UNP O32248 MET 148 MODIFIED RESIDUE SEQADV 1YVK LEU A 156 UNP O32248 EXPRESSION TAG SEQADV 1YVK GLU A 157 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS A 158 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS A 159 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS A 160 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS A 161 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS A 162 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS A 163 UNP O32248 EXPRESSION TAG SEQADV 1YVK MSE B 1 UNP O32248 MET 1 MODIFIED RESIDUE SEQADV 1YVK MSE B 3 UNP O32248 MET 3 MODIFIED RESIDUE SEQADV 1YVK MSE B 148 UNP O32248 MET 148 MODIFIED RESIDUE SEQADV 1YVK LEU B 156 UNP O32248 EXPRESSION TAG SEQADV 1YVK GLU B 157 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS B 158 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS B 159 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS B 160 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS B 161 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS B 162 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS B 163 UNP O32248 EXPRESSION TAG SEQADV 1YVK MSE C 1 UNP O32248 MET 1 MODIFIED RESIDUE SEQADV 1YVK MSE C 3 UNP O32248 MET 3 MODIFIED RESIDUE SEQADV 1YVK MSE C 148 UNP O32248 MET 148 MODIFIED RESIDUE SEQADV 1YVK LEU C 156 UNP O32248 EXPRESSION TAG SEQADV 1YVK GLU C 157 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS C 158 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS C 159 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS C 160 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS C 161 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS C 162 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS C 163 UNP O32248 EXPRESSION TAG SEQADV 1YVK MSE D 1 UNP O32248 MET 1 MODIFIED RESIDUE SEQADV 1YVK MSE D 3 UNP O32248 MET 3 MODIFIED RESIDUE SEQADV 1YVK MSE D 148 UNP O32248 MET 148 MODIFIED RESIDUE SEQADV 1YVK LEU D 156 UNP O32248 EXPRESSION TAG SEQADV 1YVK GLU D 157 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS D 158 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS D 159 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS D 160 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS D 161 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS D 162 UNP O32248 EXPRESSION TAG SEQADV 1YVK HIS D 163 UNP O32248 EXPRESSION TAG SEQRES 1 A 163 MSE ASN MSE GLN LYS LEU ARG ILE GLU LEU GLY GLU GLU SEQRES 2 A 163 THR ASN ASP GLU LEU TYR ASP LEU LEU LEU LEU ALA ASP SEQRES 3 A 163 PRO SER LYS ASP ILE VAL ASP GLU TYR LEU GLU ARG GLY SEQRES 4 A 163 GLU CYS TYR THR ALA TRP ALA GLY ASP GLU LEU ALA GLY SEQRES 5 A 163 VAL TYR VAL LEU LEU LYS THR ARG PRO GLN THR VAL GLU SEQRES 6 A 163 ILE VAL ASN ILE ALA VAL LYS GLU SER LEU GLN LYS LYS SEQRES 7 A 163 GLY PHE GLY LYS GLN LEU VAL LEU ASP ALA ILE GLU LYS SEQRES 8 A 163 ALA LYS LYS LEU GLY ALA ASP THR ILE GLU ILE GLY THR SEQRES 9 A 163 GLY ASN SER SER ILE HIS GLN LEU SER LEU TYR GLN LYS SEQRES 10 A 163 CYS GLY PHE ARG ILE GLN ALA ILE ASP HIS ASP PHE PHE SEQRES 11 A 163 LEU ARG HIS TYR ASP GLU ASP ILE PHE GLU ASN GLY ILE SEQRES 12 A 163 GLN CYS ARG ASP MSE VAL ARG LEU TYR LEU ASP LEU LEU SEQRES 13 A 163 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 163 MSE ASN MSE GLN LYS LEU ARG ILE GLU LEU GLY GLU GLU SEQRES 2 B 163 THR ASN ASP GLU LEU TYR ASP LEU LEU LEU LEU ALA ASP SEQRES 3 B 163 PRO SER LYS ASP ILE VAL ASP GLU TYR LEU GLU ARG GLY SEQRES 4 B 163 GLU CYS TYR THR ALA TRP ALA GLY ASP GLU LEU ALA GLY SEQRES 5 B 163 VAL TYR VAL LEU LEU LYS THR ARG PRO GLN THR VAL GLU SEQRES 6 B 163 ILE VAL ASN ILE ALA VAL LYS GLU SER LEU GLN LYS LYS SEQRES 7 B 163 GLY PHE GLY LYS GLN LEU VAL LEU ASP ALA ILE GLU LYS SEQRES 8 B 163 ALA LYS LYS LEU GLY ALA ASP THR ILE GLU ILE GLY THR SEQRES 9 B 163 GLY ASN SER SER ILE HIS GLN LEU SER LEU TYR GLN LYS SEQRES 10 B 163 CYS GLY PHE ARG ILE GLN ALA ILE ASP HIS ASP PHE PHE SEQRES 11 B 163 LEU ARG HIS TYR ASP GLU ASP ILE PHE GLU ASN GLY ILE SEQRES 12 B 163 GLN CYS ARG ASP MSE VAL ARG LEU TYR LEU ASP LEU LEU SEQRES 13 B 163 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 163 MSE ASN MSE GLN LYS LEU ARG ILE GLU LEU GLY GLU GLU SEQRES 2 C 163 THR ASN ASP GLU LEU TYR ASP LEU LEU LEU LEU ALA ASP SEQRES 3 C 163 PRO SER LYS ASP ILE VAL ASP GLU TYR LEU GLU ARG GLY SEQRES 4 C 163 GLU CYS TYR THR ALA TRP ALA GLY ASP GLU LEU ALA GLY SEQRES 5 C 163 VAL TYR VAL LEU LEU LYS THR ARG PRO GLN THR VAL GLU SEQRES 6 C 163 ILE VAL ASN ILE ALA VAL LYS GLU SER LEU GLN LYS LYS SEQRES 7 C 163 GLY PHE GLY LYS GLN LEU VAL LEU ASP ALA ILE GLU LYS SEQRES 8 C 163 ALA LYS LYS LEU GLY ALA ASP THR ILE GLU ILE GLY THR SEQRES 9 C 163 GLY ASN SER SER ILE HIS GLN LEU SER LEU TYR GLN LYS SEQRES 10 C 163 CYS GLY PHE ARG ILE GLN ALA ILE ASP HIS ASP PHE PHE SEQRES 11 C 163 LEU ARG HIS TYR ASP GLU ASP ILE PHE GLU ASN GLY ILE SEQRES 12 C 163 GLN CYS ARG ASP MSE VAL ARG LEU TYR LEU ASP LEU LEU SEQRES 13 C 163 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 163 MSE ASN MSE GLN LYS LEU ARG ILE GLU LEU GLY GLU GLU SEQRES 2 D 163 THR ASN ASP GLU LEU TYR ASP LEU LEU LEU LEU ALA ASP SEQRES 3 D 163 PRO SER LYS ASP ILE VAL ASP GLU TYR LEU GLU ARG GLY SEQRES 4 D 163 GLU CYS TYR THR ALA TRP ALA GLY ASP GLU LEU ALA GLY SEQRES 5 D 163 VAL TYR VAL LEU LEU LYS THR ARG PRO GLN THR VAL GLU SEQRES 6 D 163 ILE VAL ASN ILE ALA VAL LYS GLU SER LEU GLN LYS LYS SEQRES 7 D 163 GLY PHE GLY LYS GLN LEU VAL LEU ASP ALA ILE GLU LYS SEQRES 8 D 163 ALA LYS LYS LEU GLY ALA ASP THR ILE GLU ILE GLY THR SEQRES 9 D 163 GLY ASN SER SER ILE HIS GLN LEU SER LEU TYR GLN LYS SEQRES 10 D 163 CYS GLY PHE ARG ILE GLN ALA ILE ASP HIS ASP PHE PHE SEQRES 11 D 163 LEU ARG HIS TYR ASP GLU ASP ILE PHE GLU ASN GLY ILE SEQRES 12 D 163 GLN CYS ARG ASP MSE VAL ARG LEU TYR LEU ASP LEU LEU SEQRES 13 D 163 GLU HIS HIS HIS HIS HIS HIS MODRES 1YVK MSE A 148 MET SELENOMETHIONINE MODRES 1YVK MSE B 148 MET SELENOMETHIONINE MODRES 1YVK MSE C 148 MET SELENOMETHIONINE MODRES 1YVK MSE D 148 MET SELENOMETHIONINE HET MSE A 148 8 HET MSE B 148 8 HET MSE C 148 8 HET MSE D 148 8 HET COA A 201 48 HET COA B 202 48 HET COA C 203 48 HET COA D 204 48 HETNAM MSE SELENOMETHIONINE HETNAM COA COENZYME A FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 5 COA 4(C21 H36 N7 O16 P3 S) HELIX 1 1 ASN A 15 ASP A 26 1 12 HELIX 2 2 SER A 28 GLY A 39 1 12 HELIX 3 3 GLU A 73 GLN A 76 5 4 HELIX 4 4 GLY A 79 LEU A 95 1 17 HELIX 5 5 SER A 108 CYS A 118 1 11 HELIX 6 6 ASP A 128 HIS A 133 1 6 HELIX 7 7 ASN B 15 ASP B 26 1 12 HELIX 8 8 SER B 28 GLY B 39 1 12 HELIX 9 9 GLU B 73 GLN B 76 5 4 HELIX 10 10 GLY B 79 LEU B 95 1 17 HELIX 11 11 SER B 108 CYS B 118 1 11 HELIX 12 12 ASP B 128 TYR B 134 1 7 HELIX 13 13 ASN C 15 ASP C 26 1 12 HELIX 14 14 SER C 28 GLY C 39 1 12 HELIX 15 15 GLU C 73 GLN C 76 5 4 HELIX 16 16 GLY C 79 LEU C 95 1 17 HELIX 17 17 SER C 108 CYS C 118 1 11 HELIX 18 18 ASP C 128 TYR C 134 1 7 HELIX 19 19 ASN D 15 ASP D 26 1 12 HELIX 20 20 SER D 28 GLY D 39 1 12 HELIX 21 21 GLU D 73 GLN D 76 5 4 HELIX 22 22 GLY D 79 LEU D 95 1 17 HELIX 23 23 SER D 108 CYS D 118 1 11 HELIX 24 24 ASP D 128 TYR D 134 1 7 SHEET 1 A 7 ARG A 7 LEU A 10 0 SHEET 2 A 7 GLU A 40 ALA A 46 -1 O TRP A 45 N ARG A 7 SHEET 3 A 7 GLU A 49 LYS A 58 -1 O LEU A 56 N GLU A 40 SHEET 4 A 7 THR A 63 VAL A 71 -1 O GLU A 65 N LEU A 57 SHEET 5 A 7 THR A 99 GLY A 105 1 O GLU A 101 N VAL A 64 SHEET 6 A 7 MSE A 148 ASP A 154 -1 O VAL A 149 N THR A 104 SHEET 7 A 7 ARG A 121 ASP A 126 -1 N GLN A 123 O ARG A 150 SHEET 1 B 2 ILE A 138 GLU A 140 0 SHEET 2 B 2 ILE A 143 CYS A 145 -1 O ILE A 143 N GLU A 140 SHEET 1 C 7 ARG B 7 LEU B 10 0 SHEET 2 C 7 GLU B 40 ALA B 46 -1 O TRP B 45 N ARG B 7 SHEET 3 C 7 GLU B 49 LYS B 58 -1 O LEU B 56 N GLU B 40 SHEET 4 C 7 THR B 63 VAL B 71 -1 O GLU B 65 N LEU B 57 SHEET 5 C 7 THR B 99 GLY B 105 1 O GLU B 101 N VAL B 64 SHEET 6 C 7 MSE B 148 ASP B 154 -1 O VAL B 149 N THR B 104 SHEET 7 C 7 ARG B 121 ASP B 126 -1 N GLN B 123 O ARG B 150 SHEET 1 D 2 ILE B 138 GLU B 140 0 SHEET 2 D 2 ILE B 143 CYS B 145 -1 O ILE B 143 N GLU B 140 SHEET 1 E 7 ARG C 7 LEU C 10 0 SHEET 2 E 7 GLU C 40 ALA C 46 -1 O TRP C 45 N ARG C 7 SHEET 3 E 7 GLU C 49 LYS C 58 -1 O LEU C 56 N GLU C 40 SHEET 4 E 7 THR C 63 VAL C 71 -1 O GLU C 65 N LEU C 57 SHEET 5 E 7 THR C 99 GLY C 105 1 O GLU C 101 N VAL C 64 SHEET 6 E 7 MSE C 148 ASP C 154 -1 O VAL C 149 N THR C 104 SHEET 7 E 7 ARG C 121 ASP C 126 -1 N GLN C 123 O ARG C 150 SHEET 1 F 2 ILE C 138 GLU C 140 0 SHEET 2 F 2 ILE C 143 CYS C 145 -1 O ILE C 143 N GLU C 140 SHEET 1 G 7 ARG D 7 LEU D 10 0 SHEET 2 G 7 GLU D 40 ALA D 46 -1 O TRP D 45 N ARG D 7 SHEET 3 G 7 GLU D 49 LYS D 58 -1 O LEU D 56 N GLU D 40 SHEET 4 G 7 THR D 63 VAL D 71 -1 O GLU D 65 N LEU D 57 SHEET 5 G 7 THR D 99 GLY D 105 1 O GLU D 101 N VAL D 64 SHEET 6 G 7 MSE D 148 ASP D 154 -1 O VAL D 149 N THR D 104 SHEET 7 G 7 ARG D 121 ASP D 126 -1 N GLN D 123 O ARG D 150 SHEET 1 H 2 ILE D 138 GLU D 140 0 SHEET 2 H 2 ILE D 143 CYS D 145 -1 O ILE D 143 N GLU D 140 LINK C ASP A 147 N MSE A 148 1555 1555 1.32 LINK C MSE A 148 N VAL A 149 1555 1555 1.32 LINK C ASP B 147 N MSE B 148 1555 1555 1.33 LINK C MSE B 148 N VAL B 149 1555 1555 1.33 LINK C ASP C 147 N MSE C 148 1555 1555 1.32 LINK C MSE C 148 N VAL C 149 1555 1555 1.32 LINK C ASP D 147 N MSE D 148 1555 1555 1.33 LINK C MSE D 148 N VAL D 149 1555 1555 1.32 SITE 1 AC1 16 ALA A 25 ILE A 69 ALA A 70 VAL A 71 SITE 2 AC1 16 GLN A 76 LYS A 77 GLY A 79 GLY A 81 SITE 3 AC1 16 LYS A 82 HIS A 110 GLN A 111 SER A 113 SITE 4 AC1 16 LEU A 114 TYR A 115 LYS A 117 COA B 202 SITE 1 AC2 18 LYS A 117 COA A 201 ALA B 25 ILE B 69 SITE 2 AC2 18 ALA B 70 VAL B 71 GLN B 76 LYS B 77 SITE 3 AC2 18 LYS B 78 GLY B 79 PHE B 80 GLY B 81 SITE 4 AC2 18 LYS B 82 HIS B 110 GLN B 111 SER B 113 SITE 5 AC2 18 LEU B 114 LYS B 117 SITE 1 AC3 16 ALA C 25 ILE C 69 ALA C 70 VAL C 71 SITE 2 AC3 16 GLN C 76 LYS C 77 LYS C 78 GLY C 79 SITE 3 AC3 16 GLY C 81 LYS C 82 HIS C 110 GLN C 111 SITE 4 AC3 16 LEU C 114 TYR C 115 LYS C 117 COA D 204 SITE 1 AC4 15 COA C 203 ALA D 25 ILE D 69 ALA D 70 SITE 2 AC4 15 VAL D 71 GLN D 76 LYS D 77 GLY D 79 SITE 3 AC4 15 PHE D 80 GLY D 81 LYS D 82 HIS D 110 SITE 4 AC4 15 GLN D 111 LEU D 114 LYS D 117 CRYST1 59.596 124.425 216.942 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016780 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008037 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004610 0.00000