HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-FEB-05 1YX0 TITLE SOLUTION STRUCTURE OF BACILLUS SUBTILIS PROTEIN YSNE: THE NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET SR220 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YSNE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: SUBSP. SUBTILIS STR. 168; SOURCE 5 GENE: YSNE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NESG, GFT NMR, STRUCTRAL GENOMICS, SR220, STRUCTURAL GENOMICS, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,L.MA,Y.SHEN,R.XIAO,T.ACTON,G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 22-MAY-24 1YX0 1 REMARK REVDAT 3 02-MAR-22 1YX0 1 REMARK SEQADV REVDAT 2 24-FEB-09 1YX0 1 VERSN REVDAT 1 29-MAR-05 1YX0 0 JRNL AUTH G.LIU,L.MA,Y.SHEN,R.XIAO,T.ACTON,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION STRUCTURE OF BACILLUS SUBTILIS PROTEIN YSNE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, DYANA 1.5 REMARK 3 AUTHORS : GUENTERT, P. (DYANA), GUENTERT (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YX0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032018. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : NMR BUFFER 6.5 -- 5% D2O, 0.02% REMARK 210 NAN3, 10MM DTT, 5MM CACL2, 100MM REMARK 210 NACL, 20MM MES, PH 6.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : GFT (4,3)D HNNCABCA; GFT (4,3)D REMARK 210 CABCA(CO)NHN; GFT (4,3)D REMARK 210 HABCAB(CO)NHN; GFT (4,3) HCCH; REMARK 210 SIMULTANEOUS HETERONUCLEAR REMARK 210 RESOLVED [1H,1H]-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, XEASY 1.3.1.3 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING GFT NMR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 152 REMARK 465 GLU A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 HIS A 159 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 71 H SER A 108 1.52 REMARK 500 O ALA A 88 H LEU A 92 1.53 REMARK 500 O GLN A 130 H THR A 148 1.56 REMARK 500 O LYS A 4 H SER A 50 1.56 REMARK 500 O ARG A 11 H SER A 15 1.57 REMARK 500 O HIS A 94 H GLU A 98 1.57 REMARK 500 O ALA A 51 H ALA A 58 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 2 109.05 -164.48 REMARK 500 1 LEU A 8 75.23 43.02 REMARK 500 1 GLU A 19 105.76 -177.91 REMARK 500 1 MET A 27 117.29 -160.31 REMARK 500 1 GLU A 31 -67.61 -173.21 REMARK 500 1 SER A 32 86.96 -156.39 REMARK 500 1 ILE A 33 42.81 -107.04 REMARK 500 1 HIS A 34 70.20 -162.58 REMARK 500 1 LEU A 36 -62.20 -140.78 REMARK 500 1 LYS A 40 -70.98 -130.53 REMARK 500 1 GLU A 45 46.61 39.09 REMARK 500 1 GLU A 53 76.82 -111.34 REMARK 500 1 LEU A 66 -67.27 -126.27 REMARK 500 1 ARG A 69 35.22 -140.21 REMARK 500 1 LYS A 74 65.00 -150.24 REMARK 500 1 SER A 75 136.36 165.72 REMARK 500 1 MET A 76 130.44 174.97 REMARK 500 1 SER A 79 -68.19 80.31 REMARK 500 1 ALA A 80 -155.38 56.69 REMARK 500 1 HIS A 82 72.63 172.48 REMARK 500 1 LYS A 85 -65.60 178.26 REMARK 500 1 THR A 111 -167.53 -126.27 REMARK 500 1 SER A 113 80.32 -179.19 REMARK 500 1 CYS A 132 -168.23 -163.15 REMARK 500 1 PHE A 135 -88.14 -161.43 REMARK 500 1 ALA A 136 -156.26 39.79 REMARK 500 1 GLU A 140 170.72 -45.56 REMARK 500 2 HIS A 2 108.64 -165.08 REMARK 500 2 LEU A 8 -77.31 65.58 REMARK 500 2 THR A 9 137.86 -39.69 REMARK 500 2 GLU A 19 85.50 68.47 REMARK 500 2 PRO A 30 -164.92 -75.00 REMARK 500 2 SER A 32 174.89 58.20 REMARK 500 2 HIS A 34 101.73 179.08 REMARK 500 2 ALA A 35 -148.71 -128.03 REMARK 500 2 LEU A 36 -117.91 -147.64 REMARK 500 2 LYS A 40 -76.38 -77.09 REMARK 500 2 LEU A 66 -86.16 -138.60 REMARK 500 2 ARG A 69 21.95 -146.45 REMARK 500 2 SER A 75 113.53 -168.36 REMARK 500 2 SER A 79 86.14 61.55 REMARK 500 2 ALA A 80 -72.69 -90.01 REMARK 500 2 SER A 81 36.11 -155.15 REMARK 500 2 HIS A 82 102.75 71.73 REMARK 500 2 LYS A 85 -62.73 -179.85 REMARK 500 2 PHE A 117 41.70 -107.19 REMARK 500 2 GLU A 133 151.91 -43.93 REMARK 500 2 ALA A 136 172.83 67.69 REMARK 500 2 GLU A 140 163.94 -42.21 REMARK 500 2 ASP A 141 172.30 178.51 REMARK 500 REMARK 500 THIS ENTRY HAS 563 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SR220 RELATED DB: TARGETDB DBREF 1YX0 A 1 151 GB 16079885 NP_390711 1 151 SEQADV 1YX0 LEU A 152 GB 16079885 CLONING ARTIFACT SEQADV 1YX0 GLU A 153 GB 16079885 CLONING ARTIFACT SEQADV 1YX0 HIS A 154 GB 16079885 CLONING ARTIFACT SEQADV 1YX0 HIS A 155 GB 16079885 CLONING ARTIFACT SEQADV 1YX0 HIS A 156 GB 16079885 CLONING ARTIFACT SEQADV 1YX0 HIS A 157 GB 16079885 CLONING ARTIFACT SEQADV 1YX0 HIS A 158 GB 16079885 CLONING ARTIFACT SEQADV 1YX0 HIS A 159 GB 16079885 CLONING ARTIFACT SEQRES 1 A 159 MET HIS ILE LYS ILE ASP ASP LEU THR GLY ARG GLN VAL SEQRES 2 A 159 VAL SER LEU VAL ASN GLU HIS LEU HIS SER MET THR LEU SEQRES 3 A 159 MET SER PRO PRO GLU SER ILE HIS ALA LEU GLY LEU GLU SEQRES 4 A 159 LYS LEU ARG GLY PRO GLU ILE THR PHE TRP SER ALA TRP SEQRES 5 A 159 GLU GLY ASP GLU LEU ALA GLY CYS GLY ALA LEU LYS GLU SEQRES 6 A 159 LEU ASP THR ARG HIS GLY GLU ILE LYS SER MET ARG THR SEQRES 7 A 159 SER ALA SER HIS LEU ARG LYS GLY VAL ALA LYS GLN VAL SEQRES 8 A 159 LEU GLN HIS ILE ILE GLU GLU ALA GLU LYS ARG GLY TYR SEQRES 9 A 159 GLU ARG LEU SER LEU GLU THR GLY SER MET ALA SER PHE SEQRES 10 A 159 GLU PRO ALA ARG LYS LEU TYR GLU SER PHE GLY PHE GLN SEQRES 11 A 159 TYR CYS GLU PRO PHE ALA ASP TYR GLY GLU ASP PRO ASN SEQRES 12 A 159 SER VAL PHE MET THR LYS LYS LEU LEU GLU HIS HIS HIS SEQRES 13 A 159 HIS HIS HIS HELIX 1 1 GLY A 10 HIS A 20 1 11 HELIX 2 2 GLY A 37 ARG A 42 1 6 HELIX 3 3 GLY A 86 GLY A 103 1 18 HELIX 4 4 SER A 116 SER A 126 1 11 SHEET 1 A 5 ILE A 3 ASP A 6 0 SHEET 2 A 5 THR A 47 TRP A 52 -1 O SER A 50 N LYS A 4 SHEET 3 A 5 LEU A 57 ASP A 67 -1 O ALA A 58 N ALA A 51 SHEET 4 A 5 HIS A 70 GLU A 72 -1 O HIS A 70 N ASP A 67 SHEET 5 A 5 LEU A 107 SER A 108 1 O SER A 108 N GLY A 71 SHEET 1 B 2 PHE A 129 TYR A 131 0 SHEET 2 B 2 MET A 147 LYS A 149 -1 O THR A 148 N GLN A 130 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1