HEADER TRANSFERASE 19-FEB-05 1YX2 TITLE CRYSTAL STRUCTURE OF THE PROBABLE AMINOMETHYLTRANSFERASE TITLE 2 FROM BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOMETHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLYCINE CLEAVAGE SYSTEM T PROTEIN; COMPND 5 EC: 2.1.2.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: GCVT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS AMINOMETHYLTRANSFERASE, GLYCINE CLEAVAGE SYSTEM T PROTEIN, KEYWDS 2 ALPHA-BETA, BETA-BARREL, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS, MCSG EXPDTA X-RAY DIFFRACTION AUTHOR MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 2 24-FEB-09 1YX2 1 VERSN REVDAT 1 05-APR-05 1YX2 0 JRNL AUTH Y.KIM,P.QUARTEY,L.LEZONDRA,F.COLLART,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF THE PROBABLE JRNL TITL 2 AMINOMETHYLTRANSFERASE FROM BACILLUS SUBTILIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0000 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 37355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4121 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.08 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2022 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 202 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5954 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 524 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.29000 REMARK 3 B22 (A**2) : -1.99000 REMARK 3 B33 (A**2) : 4.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.348 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.262 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.198 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.205 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6099 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8276 ; 1.447 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 804 ; 6.276 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 267 ;35.355 ;24.719 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1134 ;19.061 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;18.849 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 903 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4666 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3566 ; 0.333 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 540 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 76 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.152 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3953 ; 0.505 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6181 ; 0.856 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2439 ; 1.195 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2095 ; 1.852 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 1YX2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-05. REMARK 100 THE RCSB ID CODE IS RCSB032020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCCOLLECT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41510 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 41.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, HEPES, PEG, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.04750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 TYR A 360 REMARK 465 LYS A 361 REMARK 465 ARG A 362 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 243 OG1 THR A 313 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 98 CA - CB - CG ANGL. DEV. = 17.0 DEGREES REMARK 500 LEU B 98 CA - CB - CG ANGL. DEV. = 19.2 DEGREES REMARK 500 LEU B 220 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 9 0.05 -61.77 REMARK 500 SER A 31 -55.25 -145.04 REMARK 500 ALA A 43 -117.88 -112.90 REMARK 500 VAL A 49 31.83 -144.04 REMARK 500 SER A 178 56.56 39.69 REMARK 500 TYR A 189 47.98 -156.03 REMARK 500 THR A 190 -24.99 -148.09 REMARK 500 GLN A 242 -76.39 -124.78 REMARK 500 LYS A 293 123.20 -36.45 REMARK 500 LYS A 347 18.18 54.79 REMARK 500 SER B 31 -82.83 -106.35 REMARK 500 ALA B 43 -109.35 -130.35 REMARK 500 SER B 178 60.07 32.38 REMARK 500 GLN B 242 -71.01 -130.09 REMARK 500 LYS B 347 14.01 54.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC1509 RELATED DB: TARGETDB DBREF 1YX2 A 1 362 UNP P54378 GCST_BACSU 1 362 DBREF 1YX2 B 1 362 UNP P54378 GCST_BACSU 1 362 SEQADV 1YX2 SER A -2 UNP P54378 CLONING ARTIFACT SEQADV 1YX2 ASN A -1 UNP P54378 CLONING ARTIFACT SEQADV 1YX2 ALA A 0 UNP P54378 CLONING ARTIFACT SEQADV 1YX2 MSE A 1 UNP P54378 MET 1 MODIFIED RESIDUE SEQADV 1YX2 MSE A 52 UNP P54378 MET 52 MODIFIED RESIDUE SEQADV 1YX2 MSE A 70 UNP P54378 MET 70 MODIFIED RESIDUE SEQADV 1YX2 MSE A 87 UNP P54378 MET 87 MODIFIED RESIDUE SEQADV 1YX2 MSE A 124 UNP P54378 MET 124 MODIFIED RESIDUE SEQADV 1YX2 MSE A 205 UNP P54378 MET 205 MODIFIED RESIDUE SEQADV 1YX2 ILE A 237 UNP P54378 VAL 237 CONFLICT SEQADV 1YX2 MSE A 290 UNP P54378 MET 290 MODIFIED RESIDUE SEQADV 1YX2 SER B -2 UNP P54378 CLONING ARTIFACT SEQADV 1YX2 ASN B -1 UNP P54378 CLONING ARTIFACT SEQADV 1YX2 ALA B 0 UNP P54378 CLONING ARTIFACT SEQADV 1YX2 MSE B 1 UNP P54378 MET 1 MODIFIED RESIDUE SEQADV 1YX2 MSE B 52 UNP P54378 MET 52 MODIFIED RESIDUE SEQADV 1YX2 MSE B 70 UNP P54378 MET 70 MODIFIED RESIDUE SEQADV 1YX2 MSE B 87 UNP P54378 MET 87 MODIFIED RESIDUE SEQADV 1YX2 MSE B 124 UNP P54378 MET 124 MODIFIED RESIDUE SEQADV 1YX2 MSE B 205 UNP P54378 MET 205 MODIFIED RESIDUE SEQADV 1YX2 ILE B 237 UNP P54378 VAL 237 CONFLICT SEQADV 1YX2 MSE B 290 UNP P54378 MET 290 MODIFIED RESIDUE SEQRES 1 A 365 SER ASN ALA MSE LEU LYS ARG THR PRO LEU PHE ASP LEU SEQRES 2 A 365 TYR LYS GLU TYR GLY GLY LYS THR ILE ASP PHE GLY GLY SEQRES 3 A 365 TRP GLU LEU PRO VAL GLN PHE SER SER ILE LYS LYS GLU SEQRES 4 A 365 HIS GLU ALA VAL ARG THR ALA ALA GLY LEU PHE ASP VAL SEQRES 5 A 365 SER HIS MSE GLY GLU VAL GLU VAL SER GLY ASN ASP SER SEQRES 6 A 365 LEU SER PHE LEU GLN ARG LEU MSE THR ASN ASP VAL SER SEQRES 7 A 365 ALA LEU THR PRO GLY ARG ALA GLN TYR THR ALA MSE CYS SEQRES 8 A 365 TYR PRO ASP GLY GLY THR VAL ASP ASP LEU LEU ILE TYR SEQRES 9 A 365 GLN LYS GLY GLU ASN ARG TYR LEU LEU VAL ILE ASN ALA SEQRES 10 A 365 SER ASN ILE ASP LYS ASP LEU ALA TRP MSE LYS GLU HIS SEQRES 11 A 365 ALA ALA GLY ASP VAL GLN ILE ASP ASN GLN SER ASP GLN SEQRES 12 A 365 ILE ALA LEU LEU ALA VAL GLN GLY PRO LYS ALA GLU ALA SEQRES 13 A 365 ILE LEU LYS ASN LEU THR ASP ALA ASP VAL SER ALA LEU SEQRES 14 A 365 LYS PRO PHE ALA PHE ILE ASP GLU ALA ASP ILE SER GLY SEQRES 15 A 365 ARG LYS ALA LEU ILE SER ARG THR GLY TYR THR GLY GLU SEQRES 16 A 365 ASP GLY TYR GLU ILE TYR CYS ARG SER ASP ASP ALA MSE SEQRES 17 A 365 HIS ILE TRP LYS LYS ILE ILE ASP ALA GLY ASP ALA TYR SEQRES 18 A 365 GLY LEU ILE PRO CYS GLY LEU GLY ALA ARG ASP THR LEU SEQRES 19 A 365 ARG PHE GLU ALA ASN ILE PRO LEU TYR GLY GLN GLU LEU SEQRES 20 A 365 THR ARG ASP ILE THR PRO ILE GLU ALA GLY ILE GLY PHE SEQRES 21 A 365 ALA VAL LYS HIS LYS LYS GLU SER ASP PHE PHE GLY LYS SEQRES 22 A 365 SER VAL LEU SER GLU GLN LYS GLU ASN GLY ALA LYS ARG SEQRES 23 A 365 LYS LEU VAL GLY LEU GLU MSE ILE GLU LYS GLY ILE PRO SEQRES 24 A 365 ARG HIS GLY TYR GLU VAL PHE GLN ASN GLY LYS SER VAL SEQRES 25 A 365 GLY LYS VAL THR THR GLY THR GLN SER PRO THR LEU GLY SEQRES 26 A 365 LYS ASN VAL GLY LEU ALA LEU ILE ASP SER GLU THR SER SEQRES 27 A 365 GLU ILE GLY THR VAL VAL ASP VAL GLU ILE ARG LYS LYS SEQRES 28 A 365 LEU VAL LYS ALA LYS VAL VAL LYS THR PRO PHE TYR LYS SEQRES 29 A 365 ARG SEQRES 1 B 365 SER ASN ALA MSE LEU LYS ARG THR PRO LEU PHE ASP LEU SEQRES 2 B 365 TYR LYS GLU TYR GLY GLY LYS THR ILE ASP PHE GLY GLY SEQRES 3 B 365 TRP GLU LEU PRO VAL GLN PHE SER SER ILE LYS LYS GLU SEQRES 4 B 365 HIS GLU ALA VAL ARG THR ALA ALA GLY LEU PHE ASP VAL SEQRES 5 B 365 SER HIS MSE GLY GLU VAL GLU VAL SER GLY ASN ASP SER SEQRES 6 B 365 LEU SER PHE LEU GLN ARG LEU MSE THR ASN ASP VAL SER SEQRES 7 B 365 ALA LEU THR PRO GLY ARG ALA GLN TYR THR ALA MSE CYS SEQRES 8 B 365 TYR PRO ASP GLY GLY THR VAL ASP ASP LEU LEU ILE TYR SEQRES 9 B 365 GLN LYS GLY GLU ASN ARG TYR LEU LEU VAL ILE ASN ALA SEQRES 10 B 365 SER ASN ILE ASP LYS ASP LEU ALA TRP MSE LYS GLU HIS SEQRES 11 B 365 ALA ALA GLY ASP VAL GLN ILE ASP ASN GLN SER ASP GLN SEQRES 12 B 365 ILE ALA LEU LEU ALA VAL GLN GLY PRO LYS ALA GLU ALA SEQRES 13 B 365 ILE LEU LYS ASN LEU THR ASP ALA ASP VAL SER ALA LEU SEQRES 14 B 365 LYS PRO PHE ALA PHE ILE ASP GLU ALA ASP ILE SER GLY SEQRES 15 B 365 ARG LYS ALA LEU ILE SER ARG THR GLY TYR THR GLY GLU SEQRES 16 B 365 ASP GLY TYR GLU ILE TYR CYS ARG SER ASP ASP ALA MSE SEQRES 17 B 365 HIS ILE TRP LYS LYS ILE ILE ASP ALA GLY ASP ALA TYR SEQRES 18 B 365 GLY LEU ILE PRO CYS GLY LEU GLY ALA ARG ASP THR LEU SEQRES 19 B 365 ARG PHE GLU ALA ASN ILE PRO LEU TYR GLY GLN GLU LEU SEQRES 20 B 365 THR ARG ASP ILE THR PRO ILE GLU ALA GLY ILE GLY PHE SEQRES 21 B 365 ALA VAL LYS HIS LYS LYS GLU SER ASP PHE PHE GLY LYS SEQRES 22 B 365 SER VAL LEU SER GLU GLN LYS GLU ASN GLY ALA LYS ARG SEQRES 23 B 365 LYS LEU VAL GLY LEU GLU MSE ILE GLU LYS GLY ILE PRO SEQRES 24 B 365 ARG HIS GLY TYR GLU VAL PHE GLN ASN GLY LYS SER VAL SEQRES 25 B 365 GLY LYS VAL THR THR GLY THR GLN SER PRO THR LEU GLY SEQRES 26 B 365 LYS ASN VAL GLY LEU ALA LEU ILE ASP SER GLU THR SER SEQRES 27 B 365 GLU ILE GLY THR VAL VAL ASP VAL GLU ILE ARG LYS LYS SEQRES 28 B 365 LEU VAL LYS ALA LYS VAL VAL LYS THR PRO PHE TYR LYS SEQRES 29 B 365 ARG MODRES 1YX2 MSE A 52 MET SELENOMETHIONINE MODRES 1YX2 MSE A 70 MET SELENOMETHIONINE MODRES 1YX2 MSE A 87 MET SELENOMETHIONINE MODRES 1YX2 MSE A 124 MET SELENOMETHIONINE MODRES 1YX2 MSE A 205 MET SELENOMETHIONINE MODRES 1YX2 MSE A 290 MET SELENOMETHIONINE MODRES 1YX2 MSE B 1 MET SELENOMETHIONINE MODRES 1YX2 MSE B 52 MET SELENOMETHIONINE MODRES 1YX2 MSE B 70 MET SELENOMETHIONINE MODRES 1YX2 MSE B 87 MET SELENOMETHIONINE MODRES 1YX2 MSE B 124 MET SELENOMETHIONINE MODRES 1YX2 MSE B 205 MET SELENOMETHIONINE MODRES 1YX2 MSE B 290 MET SELENOMETHIONINE HET MSE A 52 8 HET MSE A 70 8 HET MSE A 87 8 HET MSE A 124 8 HET MSE A 205 8 HET MSE A 290 8 HET MSE B 1 8 HET MSE B 52 8 HET MSE B 70 8 HET MSE B 87 8 HET MSE B 124 8 HET MSE B 205 8 HET MSE B 290 8 HET EDO B1501 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *524(H2 O) HELIX 1 1 LEU A 7 ASP A 9 5 3 HELIX 2 2 LEU A 10 GLY A 15 1 6 HELIX 3 3 SER A 32 ALA A 43 1 12 HELIX 4 4 ASP A 61 MSE A 70 1 10 HELIX 5 5 ASP A 73 LEU A 77 5 5 HELIX 6 6 ASN A 113 SER A 115 5 3 HELIX 7 7 ASN A 116 HIS A 127 1 12 HELIX 8 8 LYS A 150 ASN A 157 1 8 HELIX 9 9 ASP A 162 LEU A 166 5 5 HELIX 10 10 ASP A 203 ASP A 216 1 14 HELIX 11 11 GLY A 224 ALA A 235 1 12 HELIX 12 12 ILE A 255 VAL A 259 5 5 HELIX 13 13 GLY A 269 GLY A 280 1 12 HELIX 14 14 GLU A 333 SER A 335 5 3 HELIX 15 15 LEU B 7 ASP B 9 5 3 HELIX 16 16 LEU B 10 GLY B 15 1 6 HELIX 17 17 SER B 32 ALA B 43 1 12 HELIX 18 18 ASP B 61 MSE B 70 1 10 HELIX 19 19 ASP B 73 LEU B 77 5 5 HELIX 20 20 ASN B 116 ALA B 128 1 13 HELIX 21 21 LYS B 150 THR B 159 1 10 HELIX 22 22 ASP B 203 ASP B 216 1 14 HELIX 23 23 ALA B 217 GLY B 219 5 3 HELIX 24 24 GLY B 224 ALA B 235 1 12 HELIX 25 25 ILE B 255 VAL B 259 5 5 HELIX 26 26 GLY B 269 GLY B 280 1 12 HELIX 27 27 GLU B 333 SER B 335 5 3 SHEET 1 A 2 LYS A 17 PHE A 21 0 SHEET 2 A 2 TRP A 24 GLN A 29 -1 O LEU A 26 N ILE A 19 SHEET 1 B 6 PHE A 171 ILE A 177 0 SHEET 2 B 6 ARG A 180 SER A 185 -1 O ILE A 184 N ILE A 172 SHEET 3 B 6 GLY A 194 ARG A 200 -1 O TYR A 198 N LEU A 183 SHEET 4 B 6 ILE A 141 GLN A 147 -1 N LEU A 144 O ILE A 197 SHEET 5 B 6 ALA A 44 ASP A 48 -1 N GLY A 45 O GLN A 147 SHEET 6 B 6 LEU A 220 CYS A 223 1 O ILE A 221 N LEU A 46 SHEET 1 C 5 ALA A 82 CYS A 88 0 SHEET 2 C 5 THR A 94 GLY A 104 -1 O VAL A 95 N MSE A 87 SHEET 3 C 5 ARG A 107 ILE A 112 -1 O VAL A 111 N LEU A 99 SHEET 4 C 5 GLY A 53 SER A 58 -1 N VAL A 55 O LEU A 110 SHEET 5 C 5 GLN A 133 ASN A 136 -1 O GLN A 133 N SER A 58 SHEET 1 D 7 ARG A 283 MSE A 290 0 SHEET 2 D 7 LYS A 323 ASP A 331 -1 O GLY A 326 N LEU A 288 SHEET 3 D 7 LYS A 307 SER A 318 -1 N THR A 313 O LEU A 327 SHEET 4 D 7 GLU A 301 GLN A 304 -1 N VAL A 302 O VAL A 309 SHEET 5 D 7 VAL A 340 ILE A 345 -1 O ASP A 342 N PHE A 303 SHEET 6 D 7 LYS A 348 VAL A 355 -1 O VAL A 350 N VAL A 343 SHEET 7 D 7 ARG A 283 MSE A 290 -1 N GLU A 289 O LYS A 353 SHEET 1 E 2 LYS B 17 PHE B 21 0 SHEET 2 E 2 TRP B 24 GLN B 29 -1 O GLN B 29 N LYS B 17 SHEET 1 F 6 PHE B 171 ILE B 177 0 SHEET 2 F 6 ARG B 180 SER B 185 -1 O ARG B 180 N ILE B 177 SHEET 3 F 6 GLY B 194 ARG B 200 -1 O TYR B 198 N LEU B 183 SHEET 4 F 6 ILE B 141 GLN B 147 -1 N ALA B 142 O CYS B 199 SHEET 5 F 6 GLY B 45 ASP B 48 -1 N PHE B 47 O ALA B 145 SHEET 6 F 6 ILE B 221 CYS B 223 1 O CYS B 223 N LEU B 46 SHEET 1 G 5 ARG B 81 CYS B 88 0 SHEET 2 G 5 THR B 94 GLY B 104 -1 O VAL B 95 N MSE B 87 SHEET 3 G 5 ARG B 107 ILE B 112 -1 O LEU B 109 N TYR B 101 SHEET 4 G 5 GLY B 53 SER B 58 -1 N VAL B 55 O LEU B 110 SHEET 5 G 5 GLN B 133 ASN B 136 -1 O ASP B 135 N GLU B 56 SHEET 1 H 7 ARG B 283 MSE B 290 0 SHEET 2 H 7 LYS B 323 ASP B 331 -1 O ALA B 328 N VAL B 286 SHEET 3 H 7 LYS B 307 SER B 318 -1 N THR B 314 O LEU B 327 SHEET 4 H 7 GLU B 301 GLN B 304 -1 N VAL B 302 O GLY B 310 SHEET 5 H 7 VAL B 340 ILE B 345 -1 O ASP B 342 N PHE B 303 SHEET 6 H 7 LYS B 348 VAL B 355 -1 O ALA B 352 N VAL B 341 SHEET 7 H 7 ARG B 283 MSE B 290 -1 N GLU B 289 O LYS B 353 LINK C HIS A 51 N MSE A 52 1555 1555 1.34 LINK C MSE A 52 N GLY A 53 1555 1555 1.33 LINK C ALEU A 69 N MSE A 70 1555 1555 1.33 LINK C BLEU A 69 N MSE A 70 1555 1555 1.34 LINK C MSE A 70 N THR A 71 1555 1555 1.33 LINK C ALA A 86 N MSE A 87 1555 1555 1.33 LINK C MSE A 87 N CYS A 88 1555 1555 1.34 LINK C TRP A 123 N MSE A 124 1555 1555 1.34 LINK C MSE A 124 N LYS A 125 1555 1555 1.33 LINK C ALA A 204 N MSE A 205 1555 1555 1.33 LINK C MSE A 205 N HIS A 206 1555 1555 1.33 LINK C GLU A 289 N MSE A 290 1555 1555 1.33 LINK C MSE A 290 N ILE A 291 1555 1555 1.33 LINK C MSE B 1 N LEU B 2 1555 1555 1.33 LINK C BHIS B 51 N MSE B 52 1555 1555 1.33 LINK C AHIS B 51 N MSE B 52 1555 1555 1.32 LINK C MSE B 52 N GLY B 53 1555 1555 1.34 LINK C BLEU B 69 N MSE B 70 1555 1555 1.34 LINK C ALEU B 69 N MSE B 70 1555 1555 1.33 LINK C MSE B 70 N THR B 71 1555 1555 1.33 LINK C ALA B 86 N MSE B 87 1555 1555 1.33 LINK C MSE B 87 N CYS B 88 1555 1555 1.34 LINK C TRP B 123 N MSE B 124 1555 1555 1.34 LINK C MSE B 124 N BLYS B 125 1555 1555 1.35 LINK C MSE B 124 N ALYS B 125 1555 1555 1.32 LINK C ALA B 204 N MSE B 205 1555 1555 1.33 LINK C MSE B 205 N HIS B 206 1555 1555 1.33 LINK C GLU B 289 N MSE B 290 1555 1555 1.33 LINK C MSE B 290 N ILE B 291 1555 1555 1.33 CISPEP 1 THR A 357 PRO A 358 0 2.61 CISPEP 2 THR B 357 PRO B 358 0 0.05 SITE 1 AC1 4 PRO B 27 ASP B 48 CYS B 223 LEU B 225 CRYST1 47.628 88.095 88.764 90.00 101.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020996 0.000000 0.004379 0.00000 SCALE2 0.000000 0.011351 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011508 0.00000