data_1YXJ # _entry.id 1YXJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YXJ pdb_00001yxj 10.2210/pdb1yxj/pdb RCSB RCSB032037 ? ? WWPDB D_1000032037 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-06-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_entry_details 5 4 'Structure model' pdbx_modification_feature 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YXJ _pdbx_database_status.recvd_initial_deposition_date 2005-02-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1YXK _pdbx_database_related.details 'the same protein, disulfide-linked dimer' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ohki, I.' 1 'Ishigaki, T.' 2 'Oyama, T.' 3 'Matsunaga, S.' 4 'Xie, Q.' 5 'Ohnishi-Kameyama, M.' 6 'Murata, T.' 7 'Tsuchiya, D.' 8 'Machida, S.' 9 'Morikawa, K.' 10 'Tate, S.' 11 # _citation.id primary _citation.title ;Crystal structure of human lectin-like, oxidized low-density lipoprotein receptor 1 ligand binding domain and its ligand recognition mode to OxLDL. ; _citation.journal_abbrev Structure _citation.journal_volume 13 _citation.page_first 905 _citation.page_last 917 _citation.year 2005 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15939022 _citation.pdbx_database_id_DOI 10.1016/j.str.2005.03.016 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ohki, I.' 1 ? primary 'Ishigaki, T.' 2 ? primary 'Oyama, T.' 3 ? primary 'Matsunaga, S.' 4 ? primary 'Xie, Q.' 5 ? primary 'Ohnishi-Kameyama, M.' 6 ? primary 'Murata, T.' 7 ? primary 'Tsuchiya, D.' 8 ? primary 'Machida, S.' 9 ? primary 'Morikawa, K.' 10 ? primary 'Tate, S.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'oxidised low density lipoprotein (lectin-like) receptor 1' 15038.652 2 ? ? 'ligand-binding domain' ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 3 water nat water 18.015 207 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name LOX-1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)PCPQDWIWHGENCYLFSSGSFNWEKSQEKCLSLDAKLLKINSTADLDFIQQAISYSSFPFW(MSE)GLSRRNPSY PWLWEDGSPL(MSE)PHLFRVRGAVSQTYPSGTCAYIQRGAVYAENCILAAFSICQKKANLR ; _entity_poly.pdbx_seq_one_letter_code_can ;MPCPQDWIWHGENCYLFSSGSFNWEKSQEKCLSLDAKLLKINSTADLDFIQQAISYSSFPFWMGLSRRNPSYPWLWEDGS PLMPHLFRVRGAVSQTYPSGTCAYIQRGAVYAENCILAAFSICQKKANLR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 PRO n 1 3 CYS n 1 4 PRO n 1 5 GLN n 1 6 ASP n 1 7 TRP n 1 8 ILE n 1 9 TRP n 1 10 HIS n 1 11 GLY n 1 12 GLU n 1 13 ASN n 1 14 CYS n 1 15 TYR n 1 16 LEU n 1 17 PHE n 1 18 SER n 1 19 SER n 1 20 GLY n 1 21 SER n 1 22 PHE n 1 23 ASN n 1 24 TRP n 1 25 GLU n 1 26 LYS n 1 27 SER n 1 28 GLN n 1 29 GLU n 1 30 LYS n 1 31 CYS n 1 32 LEU n 1 33 SER n 1 34 LEU n 1 35 ASP n 1 36 ALA n 1 37 LYS n 1 38 LEU n 1 39 LEU n 1 40 LYS n 1 41 ILE n 1 42 ASN n 1 43 SER n 1 44 THR n 1 45 ALA n 1 46 ASP n 1 47 LEU n 1 48 ASP n 1 49 PHE n 1 50 ILE n 1 51 GLN n 1 52 GLN n 1 53 ALA n 1 54 ILE n 1 55 SER n 1 56 TYR n 1 57 SER n 1 58 SER n 1 59 PHE n 1 60 PRO n 1 61 PHE n 1 62 TRP n 1 63 MSE n 1 64 GLY n 1 65 LEU n 1 66 SER n 1 67 ARG n 1 68 ARG n 1 69 ASN n 1 70 PRO n 1 71 SER n 1 72 TYR n 1 73 PRO n 1 74 TRP n 1 75 LEU n 1 76 TRP n 1 77 GLU n 1 78 ASP n 1 79 GLY n 1 80 SER n 1 81 PRO n 1 82 LEU n 1 83 MSE n 1 84 PRO n 1 85 HIS n 1 86 LEU n 1 87 PHE n 1 88 ARG n 1 89 VAL n 1 90 ARG n 1 91 GLY n 1 92 ALA n 1 93 VAL n 1 94 SER n 1 95 GLN n 1 96 THR n 1 97 TYR n 1 98 PRO n 1 99 SER n 1 100 GLY n 1 101 THR n 1 102 CYS n 1 103 ALA n 1 104 TYR n 1 105 ILE n 1 106 GLN n 1 107 ARG n 1 108 GLY n 1 109 ALA n 1 110 VAL n 1 111 TYR n 1 112 ALA n 1 113 GLU n 1 114 ASN n 1 115 CYS n 1 116 ILE n 1 117 LEU n 1 118 ALA n 1 119 ALA n 1 120 PHE n 1 121 SER n 1 122 ILE n 1 123 CYS n 1 124 GLN n 1 125 LYS n 1 126 LYS n 1 127 ALA n 1 128 ASN n 1 129 LEU n 1 130 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 142 142 MSE MSE A . n A 1 2 PRO 2 143 143 PRO PRO A . n A 1 3 CYS 3 144 144 CYS CYS A . n A 1 4 PRO 4 145 145 PRO PRO A . n A 1 5 GLN 5 146 146 GLN GLN A . n A 1 6 ASP 6 147 147 ASP ASP A . n A 1 7 TRP 7 148 148 TRP TRP A . n A 1 8 ILE 8 149 149 ILE ILE A . n A 1 9 TRP 9 150 150 TRP TRP A . n A 1 10 HIS 10 151 151 HIS HIS A . n A 1 11 GLY 11 152 152 GLY GLY A . n A 1 12 GLU 12 153 153 GLU GLU A . n A 1 13 ASN 13 154 154 ASN ASN A . n A 1 14 CYS 14 155 155 CYS CYS A . n A 1 15 TYR 15 156 156 TYR TYR A . n A 1 16 LEU 16 157 157 LEU LEU A . n A 1 17 PHE 17 158 158 PHE PHE A . n A 1 18 SER 18 159 159 SER SER A . n A 1 19 SER 19 160 160 SER SER A . n A 1 20 GLY 20 161 161 GLY GLY A . n A 1 21 SER 21 162 162 SER SER A . n A 1 22 PHE 22 163 163 PHE PHE A . n A 1 23 ASN 23 164 164 ASN ASN A . n A 1 24 TRP 24 165 165 TRP TRP A . n A 1 25 GLU 25 166 166 GLU GLU A . n A 1 26 LYS 26 167 167 LYS LYS A . n A 1 27 SER 27 168 168 SER SER A . n A 1 28 GLN 28 169 169 GLN GLN A . n A 1 29 GLU 29 170 170 GLU GLU A . n A 1 30 LYS 30 171 171 LYS LYS A . n A 1 31 CYS 31 172 172 CYS CYS A . n A 1 32 LEU 32 173 173 LEU LEU A . n A 1 33 SER 33 174 174 SER SER A . n A 1 34 LEU 34 175 175 LEU LEU A . n A 1 35 ASP 35 176 176 ASP ASP A . n A 1 36 ALA 36 177 177 ALA ALA A . n A 1 37 LYS 37 178 178 LYS LYS A . n A 1 38 LEU 38 179 179 LEU LEU A . n A 1 39 LEU 39 180 180 LEU LEU A . n A 1 40 LYS 40 181 181 LYS LYS A . n A 1 41 ILE 41 182 182 ILE ILE A . n A 1 42 ASN 42 183 183 ASN ASN A . n A 1 43 SER 43 184 184 SER SER A . n A 1 44 THR 44 185 185 THR THR A . n A 1 45 ALA 45 186 186 ALA ALA A . n A 1 46 ASP 46 187 187 ASP ASP A . n A 1 47 LEU 47 188 188 LEU LEU A . n A 1 48 ASP 48 189 189 ASP ASP A . n A 1 49 PHE 49 190 190 PHE PHE A . n A 1 50 ILE 50 191 191 ILE ILE A . n A 1 51 GLN 51 192 192 GLN GLN A . n A 1 52 GLN 52 193 193 GLN GLN A . n A 1 53 ALA 53 194 194 ALA ALA A . n A 1 54 ILE 54 195 195 ILE ILE A . n A 1 55 SER 55 196 196 SER SER A . n A 1 56 TYR 56 197 197 TYR TYR A . n A 1 57 SER 57 198 198 SER SER A . n A 1 58 SER 58 199 199 SER SER A . n A 1 59 PHE 59 200 200 PHE PHE A . n A 1 60 PRO 60 201 201 PRO PRO A . n A 1 61 PHE 61 202 202 PHE PHE A . n A 1 62 TRP 62 203 203 TRP TRP A . n A 1 63 MSE 63 204 204 MSE MSE A . n A 1 64 GLY 64 205 205 GLY GLY A . n A 1 65 LEU 65 206 206 LEU LEU A . n A 1 66 SER 66 207 207 SER SER A . n A 1 67 ARG 67 208 208 ARG ARG A . n A 1 68 ARG 68 209 209 ARG ARG A . n A 1 69 ASN 69 210 210 ASN ASN A . n A 1 70 PRO 70 211 211 PRO PRO A . n A 1 71 SER 71 212 212 SER SER A . n A 1 72 TYR 72 213 213 TYR TYR A . n A 1 73 PRO 73 214 214 PRO PRO A . n A 1 74 TRP 74 215 215 TRP TRP A . n A 1 75 LEU 75 216 216 LEU LEU A . n A 1 76 TRP 76 217 217 TRP TRP A . n A 1 77 GLU 77 218 218 GLU GLU A . n A 1 78 ASP 78 219 219 ASP ASP A . n A 1 79 GLY 79 220 220 GLY GLY A . n A 1 80 SER 80 221 221 SER SER A . n A 1 81 PRO 81 222 222 PRO PRO A . n A 1 82 LEU 82 223 223 LEU LEU A . n A 1 83 MSE 83 224 224 MSE MSE A . n A 1 84 PRO 84 225 225 PRO PRO A . n A 1 85 HIS 85 226 226 HIS HIS A . n A 1 86 LEU 86 227 227 LEU LEU A . n A 1 87 PHE 87 228 228 PHE PHE A . n A 1 88 ARG 88 229 229 ARG ARG A . n A 1 89 VAL 89 230 230 VAL VAL A . n A 1 90 ARG 90 231 231 ARG ARG A . n A 1 91 GLY 91 232 232 GLY GLY A . n A 1 92 ALA 92 233 233 ALA ALA A . n A 1 93 VAL 93 234 234 VAL VAL A . n A 1 94 SER 94 235 235 SER SER A . n A 1 95 GLN 95 236 236 GLN GLN A . n A 1 96 THR 96 237 237 THR THR A . n A 1 97 TYR 97 238 238 TYR TYR A . n A 1 98 PRO 98 239 239 PRO PRO A . n A 1 99 SER 99 240 240 SER SER A . n A 1 100 GLY 100 241 241 GLY GLY A . n A 1 101 THR 101 242 242 THR THR A . n A 1 102 CYS 102 243 243 CYS CYS A . n A 1 103 ALA 103 244 244 ALA ALA A . n A 1 104 TYR 104 245 245 TYR TYR A . n A 1 105 ILE 105 246 246 ILE ILE A . n A 1 106 GLN 106 247 247 GLN GLN A . n A 1 107 ARG 107 248 248 ARG ARG A . n A 1 108 GLY 108 249 249 GLY GLY A . n A 1 109 ALA 109 250 250 ALA ALA A . n A 1 110 VAL 110 251 251 VAL VAL A . n A 1 111 TYR 111 252 252 TYR TYR A . n A 1 112 ALA 112 253 253 ALA ALA A . n A 1 113 GLU 113 254 254 GLU GLU A . n A 1 114 ASN 114 255 255 ASN ASN A . n A 1 115 CYS 115 256 256 CYS CYS A . n A 1 116 ILE 116 257 257 ILE ILE A . n A 1 117 LEU 117 258 258 LEU LEU A . n A 1 118 ALA 118 259 259 ALA ALA A . n A 1 119 ALA 119 260 260 ALA ALA A . n A 1 120 PHE 120 261 261 PHE PHE A . n A 1 121 SER 121 262 262 SER SER A . n A 1 122 ILE 122 263 263 ILE ILE A . n A 1 123 CYS 123 264 264 CYS CYS A . n A 1 124 GLN 124 265 265 GLN GLN A . n A 1 125 LYS 125 266 266 LYS LYS A . n A 1 126 LYS 126 267 267 LYS LYS A . n A 1 127 ALA 127 268 268 ALA ALA A . n A 1 128 ASN 128 269 269 ASN ASN A . n A 1 129 LEU 129 270 270 LEU LEU A . n A 1 130 ARG 130 271 271 ARG ARG A . n B 1 1 MSE 1 142 ? ? ? B . n B 1 2 PRO 2 143 143 PRO PRO B . n B 1 3 CYS 3 144 144 CYS CYS B . n B 1 4 PRO 4 145 145 PRO PRO B . n B 1 5 GLN 5 146 146 GLN GLN B . n B 1 6 ASP 6 147 147 ASP ASP B . n B 1 7 TRP 7 148 148 TRP TRP B . n B 1 8 ILE 8 149 149 ILE ILE B . n B 1 9 TRP 9 150 150 TRP TRP B . n B 1 10 HIS 10 151 151 HIS HIS B . n B 1 11 GLY 11 152 152 GLY GLY B . n B 1 12 GLU 12 153 153 GLU GLU B . n B 1 13 ASN 13 154 154 ASN ASN B . n B 1 14 CYS 14 155 155 CYS CYS B . n B 1 15 TYR 15 156 156 TYR TYR B . n B 1 16 LEU 16 157 157 LEU LEU B . n B 1 17 PHE 17 158 158 PHE PHE B . n B 1 18 SER 18 159 159 SER SER B . n B 1 19 SER 19 160 160 SER SER B . n B 1 20 GLY 20 161 161 GLY GLY B . n B 1 21 SER 21 162 162 SER SER B . n B 1 22 PHE 22 163 163 PHE PHE B . n B 1 23 ASN 23 164 164 ASN ASN B . n B 1 24 TRP 24 165 165 TRP TRP B . n B 1 25 GLU 25 166 166 GLU GLU B . n B 1 26 LYS 26 167 167 LYS LYS B . n B 1 27 SER 27 168 168 SER SER B . n B 1 28 GLN 28 169 169 GLN GLN B . n B 1 29 GLU 29 170 170 GLU GLU B . n B 1 30 LYS 30 171 171 LYS LYS B . n B 1 31 CYS 31 172 172 CYS CYS B . n B 1 32 LEU 32 173 173 LEU LEU B . n B 1 33 SER 33 174 174 SER SER B . n B 1 34 LEU 34 175 175 LEU LEU B . n B 1 35 ASP 35 176 176 ASP ASP B . n B 1 36 ALA 36 177 177 ALA ALA B . n B 1 37 LYS 37 178 178 LYS LYS B . n B 1 38 LEU 38 179 179 LEU LEU B . n B 1 39 LEU 39 180 180 LEU LEU B . n B 1 40 LYS 40 181 181 LYS LYS B . n B 1 41 ILE 41 182 182 ILE ILE B . n B 1 42 ASN 42 183 183 ASN ASN B . n B 1 43 SER 43 184 184 SER SER B . n B 1 44 THR 44 185 185 THR THR B . n B 1 45 ALA 45 186 186 ALA ALA B . n B 1 46 ASP 46 187 187 ASP ASP B . n B 1 47 LEU 47 188 188 LEU LEU B . n B 1 48 ASP 48 189 189 ASP ASP B . n B 1 49 PHE 49 190 190 PHE PHE B . n B 1 50 ILE 50 191 191 ILE ILE B . n B 1 51 GLN 51 192 192 GLN GLN B . n B 1 52 GLN 52 193 193 GLN GLN B . n B 1 53 ALA 53 194 194 ALA ALA B . n B 1 54 ILE 54 195 195 ILE ILE B . n B 1 55 SER 55 196 196 SER SER B . n B 1 56 TYR 56 197 197 TYR TYR B . n B 1 57 SER 57 198 198 SER SER B . n B 1 58 SER 58 199 199 SER SER B . n B 1 59 PHE 59 200 200 PHE PHE B . n B 1 60 PRO 60 201 201 PRO PRO B . n B 1 61 PHE 61 202 202 PHE PHE B . n B 1 62 TRP 62 203 203 TRP TRP B . n B 1 63 MSE 63 204 204 MSE MSE B . n B 1 64 GLY 64 205 205 GLY GLY B . n B 1 65 LEU 65 206 206 LEU LEU B . n B 1 66 SER 66 207 207 SER SER B . n B 1 67 ARG 67 208 208 ARG ARG B . n B 1 68 ARG 68 209 209 ARG ARG B . n B 1 69 ASN 69 210 210 ASN ASN B . n B 1 70 PRO 70 211 211 PRO PRO B . n B 1 71 SER 71 212 212 SER SER B . n B 1 72 TYR 72 213 213 TYR TYR B . n B 1 73 PRO 73 214 214 PRO PRO B . n B 1 74 TRP 74 215 215 TRP TRP B . n B 1 75 LEU 75 216 216 LEU LEU B . n B 1 76 TRP 76 217 217 TRP TRP B . n B 1 77 GLU 77 218 218 GLU GLU B . n B 1 78 ASP 78 219 219 ASP ASP B . n B 1 79 GLY 79 220 220 GLY GLY B . n B 1 80 SER 80 221 221 SER SER B . n B 1 81 PRO 81 222 222 PRO PRO B . n B 1 82 LEU 82 223 223 LEU LEU B . n B 1 83 MSE 83 224 224 MSE MSE B . n B 1 84 PRO 84 225 225 PRO PRO B . n B 1 85 HIS 85 226 226 HIS HIS B . n B 1 86 LEU 86 227 227 LEU LEU B . n B 1 87 PHE 87 228 228 PHE PHE B . n B 1 88 ARG 88 229 229 ARG ARG B . n B 1 89 VAL 89 230 230 VAL VAL B . n B 1 90 ARG 90 231 231 ARG ARG B . n B 1 91 GLY 91 232 232 GLY GLY B . n B 1 92 ALA 92 233 233 ALA ALA B . n B 1 93 VAL 93 234 234 VAL VAL B . n B 1 94 SER 94 235 235 SER SER B . n B 1 95 GLN 95 236 236 GLN GLN B . n B 1 96 THR 96 237 237 THR THR B . n B 1 97 TYR 97 238 238 TYR TYR B . n B 1 98 PRO 98 239 239 PRO PRO B . n B 1 99 SER 99 240 240 SER SER B . n B 1 100 GLY 100 241 241 GLY GLY B . n B 1 101 THR 101 242 242 THR THR B . n B 1 102 CYS 102 243 243 CYS CYS B . n B 1 103 ALA 103 244 244 ALA ALA B . n B 1 104 TYR 104 245 245 TYR TYR B . n B 1 105 ILE 105 246 246 ILE ILE B . n B 1 106 GLN 106 247 247 GLN GLN B . n B 1 107 ARG 107 248 248 ARG ARG B . n B 1 108 GLY 108 249 249 GLY GLY B . n B 1 109 ALA 109 250 250 ALA ALA B . n B 1 110 VAL 110 251 251 VAL VAL B . n B 1 111 TYR 111 252 252 TYR TYR B . n B 1 112 ALA 112 253 253 ALA ALA B . n B 1 113 GLU 113 254 254 GLU GLU B . n B 1 114 ASN 114 255 255 ASN ASN B . n B 1 115 CYS 115 256 256 CYS CYS B . n B 1 116 ILE 116 257 257 ILE ILE B . n B 1 117 LEU 117 258 258 LEU LEU B . n B 1 118 ALA 118 259 259 ALA ALA B . n B 1 119 ALA 119 260 260 ALA ALA B . n B 1 120 PHE 120 261 261 PHE PHE B . n B 1 121 SER 121 262 262 SER SER B . n B 1 122 ILE 122 263 263 ILE ILE B . n B 1 123 CYS 123 264 264 CYS CYS B . n B 1 124 GLN 124 265 265 GLN GLN B . n B 1 125 LYS 125 266 266 LYS LYS B . n B 1 126 LYS 126 267 267 LYS LYS B . n B 1 127 ALA 127 268 268 ALA ALA B . n B 1 128 ASN 128 269 269 ASN ASN B . n B 1 129 LEU 129 270 270 LEU LEU B . n B 1 130 ARG 130 271 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO 1 2002 2002 EDO EGL A . D 2 EDO 1 2001 2001 EDO EGL B . E 3 HOH 1 1001 1001 HOH HOH A . E 3 HOH 2 1008 1008 HOH HOH A . E 3 HOH 3 1009 1009 HOH HOH A . E 3 HOH 4 1010 1010 HOH HOH A . E 3 HOH 5 1012 1012 HOH HOH A . E 3 HOH 6 1013 1013 HOH HOH A . E 3 HOH 7 1015 1015 HOH HOH A . E 3 HOH 8 1020 1020 HOH HOH A . E 3 HOH 9 1022 1022 HOH HOH A . E 3 HOH 10 1023 1023 HOH HOH A . E 3 HOH 11 1024 1024 HOH HOH A . E 3 HOH 12 1027 1027 HOH HOH A . E 3 HOH 13 1029 1029 HOH HOH A . E 3 HOH 14 1031 1031 HOH HOH A . E 3 HOH 15 1034 1034 HOH HOH A . E 3 HOH 16 1036 1036 HOH HOH A . E 3 HOH 17 1038 1038 HOH HOH A . E 3 HOH 18 1039 1039 HOH HOH A . E 3 HOH 19 1040 1040 HOH HOH A . E 3 HOH 20 1042 1042 HOH HOH A . E 3 HOH 21 1050 1050 HOH HOH A . E 3 HOH 22 1051 1051 HOH HOH A . E 3 HOH 23 1054 1054 HOH HOH A . E 3 HOH 24 1056 1056 HOH HOH A . E 3 HOH 25 1058 1058 HOH HOH A . E 3 HOH 26 1059 1059 HOH HOH A . E 3 HOH 27 1064 1064 HOH HOH A . E 3 HOH 28 1069 1069 HOH HOH A . E 3 HOH 29 1071 1071 HOH HOH A . E 3 HOH 30 1074 1074 HOH HOH A . E 3 HOH 31 1077 1077 HOH HOH A . E 3 HOH 32 1078 1078 HOH HOH A . E 3 HOH 33 1081 1081 HOH HOH A . E 3 HOH 34 1082 1082 HOH HOH A . E 3 HOH 35 1083 1083 HOH HOH A . E 3 HOH 36 1085 1085 HOH HOH A . E 3 HOH 37 1086 1086 HOH HOH A . E 3 HOH 38 1092 1092 HOH HOH A . E 3 HOH 39 1094 1094 HOH HOH A . E 3 HOH 40 1097 1097 HOH HOH A . E 3 HOH 41 1103 1103 HOH HOH A . E 3 HOH 42 1104 1104 HOH HOH A . E 3 HOH 43 1107 1107 HOH HOH A . E 3 HOH 44 1110 1110 HOH HOH A . E 3 HOH 45 1111 1111 HOH HOH A . E 3 HOH 46 1112 1112 HOH HOH A . E 3 HOH 47 1113 1113 HOH HOH A . E 3 HOH 48 1114 1114 HOH HOH A . E 3 HOH 49 1118 1118 HOH HOH A . E 3 HOH 50 1119 1119 HOH HOH A . E 3 HOH 51 1120 1120 HOH HOH A . E 3 HOH 52 1122 1122 HOH HOH A . E 3 HOH 53 1125 1125 HOH HOH A . E 3 HOH 54 1126 1126 HOH HOH A . E 3 HOH 55 1127 1127 HOH HOH A . E 3 HOH 56 1133 1133 HOH HOH A . E 3 HOH 57 1135 1135 HOH HOH A . E 3 HOH 58 1140 1140 HOH HOH A . E 3 HOH 59 1141 1141 HOH HOH A . E 3 HOH 60 1147 1147 HOH HOH A . E 3 HOH 61 1151 1151 HOH HOH A . E 3 HOH 62 1155 1155 HOH HOH A . E 3 HOH 63 1158 1158 HOH HOH A . E 3 HOH 64 1159 1159 HOH HOH A . E 3 HOH 65 1161 1161 HOH HOH A . E 3 HOH 66 1164 1164 HOH HOH A . E 3 HOH 67 1165 1165 HOH HOH A . E 3 HOH 68 1168 1168 HOH HOH A . E 3 HOH 69 1173 1173 HOH HOH A . E 3 HOH 70 1176 1176 HOH HOH A . E 3 HOH 71 1177 1177 HOH HOH A . E 3 HOH 72 1179 1179 HOH HOH A . E 3 HOH 73 1182 1182 HOH HOH A . E 3 HOH 74 1184 1184 HOH HOH A . E 3 HOH 75 1188 1188 HOH HOH A . E 3 HOH 76 1189 1189 HOH HOH A . E 3 HOH 77 1192 1192 HOH HOH A . E 3 HOH 78 1193 1193 HOH HOH A . E 3 HOH 79 1195 1195 HOH HOH A . E 3 HOH 80 1197 1197 HOH HOH A . E 3 HOH 81 1198 1198 HOH HOH A . E 3 HOH 82 1199 1199 HOH HOH A . E 3 HOH 83 1200 1200 HOH HOH A . E 3 HOH 84 1201 1201 HOH HOH A . E 3 HOH 85 1202 1202 HOH HOH A . E 3 HOH 86 1203 1203 HOH HOH A . E 3 HOH 87 1205 1205 HOH HOH A . E 3 HOH 88 1206 1206 HOH HOH A . E 3 HOH 89 1207 1207 HOH HOH A . F 3 HOH 1 1002 1002 HOH HOH B . F 3 HOH 2 1003 1003 HOH HOH B . F 3 HOH 3 1004 1004 HOH HOH B . F 3 HOH 4 1005 1005 HOH HOH B . F 3 HOH 5 1006 1006 HOH HOH B . F 3 HOH 6 1007 1007 HOH HOH B . F 3 HOH 7 1011 1011 HOH HOH B . F 3 HOH 8 1014 1014 HOH HOH B . F 3 HOH 9 1016 1016 HOH HOH B . F 3 HOH 10 1017 1017 HOH HOH B . F 3 HOH 11 1018 1018 HOH HOH B . F 3 HOH 12 1019 1019 HOH HOH B . F 3 HOH 13 1021 1021 HOH HOH B . F 3 HOH 14 1025 1025 HOH HOH B . F 3 HOH 15 1026 1026 HOH HOH B . F 3 HOH 16 1028 1028 HOH HOH B . F 3 HOH 17 1030 1030 HOH HOH B . F 3 HOH 18 1032 1032 HOH HOH B . F 3 HOH 19 1033 1033 HOH HOH B . F 3 HOH 20 1035 1035 HOH HOH B . F 3 HOH 21 1037 1037 HOH HOH B . F 3 HOH 22 1041 1041 HOH HOH B . F 3 HOH 23 1043 1043 HOH HOH B . F 3 HOH 24 1044 1044 HOH HOH B . F 3 HOH 25 1045 1045 HOH HOH B . F 3 HOH 26 1046 1046 HOH HOH B . F 3 HOH 27 1047 1047 HOH HOH B . F 3 HOH 28 1048 1048 HOH HOH B . F 3 HOH 29 1049 1049 HOH HOH B . F 3 HOH 30 1052 1052 HOH HOH B . F 3 HOH 31 1053 1053 HOH HOH B . F 3 HOH 32 1055 1055 HOH HOH B . F 3 HOH 33 1057 1057 HOH HOH B . F 3 HOH 34 1060 1060 HOH HOH B . F 3 HOH 35 1061 1061 HOH HOH B . F 3 HOH 36 1062 1062 HOH HOH B . F 3 HOH 37 1063 1063 HOH HOH B . F 3 HOH 38 1065 1065 HOH HOH B . F 3 HOH 39 1066 1066 HOH HOH B . F 3 HOH 40 1067 1067 HOH HOH B . F 3 HOH 41 1068 1068 HOH HOH B . F 3 HOH 42 1070 1070 HOH HOH B . F 3 HOH 43 1072 1072 HOH HOH B . F 3 HOH 44 1073 1073 HOH HOH B . F 3 HOH 45 1075 1075 HOH HOH B . F 3 HOH 46 1076 1076 HOH HOH B . F 3 HOH 47 1079 1079 HOH HOH B . F 3 HOH 48 1080 1080 HOH HOH B . F 3 HOH 49 1084 1084 HOH HOH B . F 3 HOH 50 1087 1087 HOH HOH B . F 3 HOH 51 1088 1088 HOH HOH B . F 3 HOH 52 1089 1089 HOH HOH B . F 3 HOH 53 1090 1090 HOH HOH B . F 3 HOH 54 1091 1091 HOH HOH B . F 3 HOH 55 1093 1093 HOH HOH B . F 3 HOH 56 1095 1095 HOH HOH B . F 3 HOH 57 1096 1096 HOH HOH B . F 3 HOH 58 1098 1098 HOH HOH B . F 3 HOH 59 1099 1099 HOH HOH B . F 3 HOH 60 1100 1100 HOH HOH B . F 3 HOH 61 1101 1101 HOH HOH B . F 3 HOH 62 1102 1102 HOH HOH B . F 3 HOH 63 1105 1105 HOH HOH B . F 3 HOH 64 1106 1106 HOH HOH B . F 3 HOH 65 1108 1108 HOH HOH B . F 3 HOH 66 1109 1109 HOH HOH B . F 3 HOH 67 1115 1115 HOH HOH B . F 3 HOH 68 1116 1116 HOH HOH B . F 3 HOH 69 1117 1117 HOH HOH B . F 3 HOH 70 1121 1121 HOH HOH B . F 3 HOH 71 1123 1123 HOH HOH B . F 3 HOH 72 1124 1124 HOH HOH B . F 3 HOH 73 1128 1128 HOH HOH B . F 3 HOH 74 1129 1129 HOH HOH B . F 3 HOH 75 1130 1130 HOH HOH B . F 3 HOH 76 1131 1131 HOH HOH B . F 3 HOH 77 1132 1132 HOH HOH B . F 3 HOH 78 1134 1134 HOH HOH B . F 3 HOH 79 1136 1136 HOH HOH B . F 3 HOH 80 1137 1137 HOH HOH B . F 3 HOH 81 1138 1138 HOH HOH B . F 3 HOH 82 1139 1139 HOH HOH B . F 3 HOH 83 1142 1142 HOH HOH B . F 3 HOH 84 1143 1143 HOH HOH B . F 3 HOH 85 1144 1144 HOH HOH B . F 3 HOH 86 1145 1145 HOH HOH B . F 3 HOH 87 1146 1146 HOH HOH B . F 3 HOH 88 1148 1148 HOH HOH B . F 3 HOH 89 1149 1149 HOH HOH B . F 3 HOH 90 1150 1150 HOH HOH B . F 3 HOH 91 1152 1152 HOH HOH B . F 3 HOH 92 1153 1153 HOH HOH B . F 3 HOH 93 1154 1154 HOH HOH B . F 3 HOH 94 1156 1156 HOH HOH B . F 3 HOH 95 1157 1157 HOH HOH B . F 3 HOH 96 1160 1160 HOH HOH B . F 3 HOH 97 1162 1162 HOH HOH B . F 3 HOH 98 1163 1163 HOH HOH B . F 3 HOH 99 1166 1166 HOH HOH B . F 3 HOH 100 1167 1167 HOH HOH B . F 3 HOH 101 1169 1169 HOH HOH B . F 3 HOH 102 1170 1170 HOH HOH B . F 3 HOH 103 1171 1171 HOH HOH B . F 3 HOH 104 1172 1172 HOH HOH B . F 3 HOH 105 1174 1174 HOH HOH B . F 3 HOH 106 1175 1175 HOH HOH B . F 3 HOH 107 1178 1178 HOH HOH B . F 3 HOH 108 1180 1180 HOH HOH B . F 3 HOH 109 1181 1181 HOH HOH B . F 3 HOH 110 1183 1183 HOH HOH B . F 3 HOH 111 1185 1185 HOH HOH B . F 3 HOH 112 1186 1186 HOH HOH B . F 3 HOH 113 1187 1187 HOH HOH B . F 3 HOH 114 1190 1190 HOH HOH B . F 3 HOH 115 1191 1191 HOH HOH B . F 3 HOH 116 1194 1194 HOH HOH B . F 3 HOH 117 1196 1196 HOH HOH B . F 3 HOH 118 1204 1204 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 0.9 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHARP phasing . ? 4 # _cell.entry_id 1YXJ _cell.length_a 62.636 _cell.length_b 68.828 _cell.length_c 79.133 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1YXJ _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1YXJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.83 _exptl_crystal.density_percent_sol 56.60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 3.6 _exptl_crystal_grow.pdbx_details 'Citrate, pH 3.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-09-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL40B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL40B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 1YXJ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.78 _reflns.number_obs 33424 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 15.5 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1YXJ _refine.ls_number_reflns_obs 32025 _refine.ls_number_reflns_all 33450 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 279086.18 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.18 _refine.ls_d_res_high 1.78 _refine.ls_percent_reflns_obs 95.6 _refine.ls_R_factor_obs 0.211 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.211 _refine.ls_R_factor_R_free 0.234 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1597 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 22.7 _refine.aniso_B[1][1] 6.42 _refine.aniso_B[2][2] -3.76 _refine.aniso_B[3][3] -2.66 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.429383 _refine.solvent_model_param_bsol 47.5479 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1YXJ _refine_analyze.Luzzati_coordinate_error_obs 0.20 _refine_analyze.Luzzati_sigma_a_obs 0.15 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.23 _refine_analyze.Luzzati_sigma_a_free 0.17 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2076 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 207 _refine_hist.number_atoms_total 2291 _refine_hist.d_res_high 1.78 _refine_hist.d_res_low 28.18 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.0 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.05 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.13 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.83 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.85 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.73 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.78 _refine_ls_shell.d_res_low 1.89 _refine_ls_shell.number_reflns_R_work 4598 _refine_ls_shell.R_factor_R_work 0.261 _refine_ls_shell.percent_reflns_obs 88.4 _refine_ls_shell.R_factor_R_free 0.285 _refine_ls_shell.R_factor_R_free_error 0.018 _refine_ls_shell.percent_reflns_R_free 5.0 _refine_ls_shell.number_reflns_R_free 241 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 4 EGL_XPLOR_PARAM EGL_XPLOR_TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1YXJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1YXJ _struct.title 'Crystal structure of human lectin-like oxidized low-density lipoprotein receptor 1 (LOX-1) at low pH' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YXJ _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' _struct_keywords.text 'C-type lectin-like domain, LOX-1, CTLD, Scavenger receptor, Oxidized LDL receptor, NK cell receptor, LIPID BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code P78380_HUMAN _struct_ref.pdbx_db_accession P78380 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PCPQDWIWHGENCYLFSSGSFNWEKSQEKCLSLDAKLLKINSTADLDFIQQAISYSSFPFWMGLSRRNPSYPWLWEDGSP LMPHLFRVRGAVSQTYPSGTCAYIQRGAVYAENCILAAFSICQKKANLR ; _struct_ref.pdbx_align_begin 143 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1YXJ A 2 ? 130 ? P78380 143 ? 271 ? 143 271 2 1 1YXJ B 2 ? 130 ? P78380 143 ? 271 ? 143 271 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1YXJ MSE A 1 ? UNP P78380 ? ? 'initiating methionine' 142 1 1 1YXJ MSE A 63 ? UNP P78380 MET 204 'modified residue' 204 2 1 1YXJ MSE A 83 ? UNP P78380 MET 224 'modified residue' 224 3 2 1YXJ MSE B 1 ? UNP P78380 ? ? 'initiating methionine' 142 4 2 1YXJ MSE B 63 ? UNP P78380 MET 204 'modified residue' 204 5 2 1YXJ MSE B 83 ? UNP P78380 MET 224 'modified residue' 224 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 23 ? SER A 33 ? ASN A 164 SER A 174 1 ? 11 HELX_P HELX_P2 2 SER A 43 ? SER A 55 ? SER A 184 SER A 196 1 ? 13 HELX_P HELX_P3 3 ASN B 23 ? LEU B 34 ? ASN B 164 LEU B 175 1 ? 12 HELX_P HELX_P4 4 SER B 43 ? ILE B 54 ? SER B 184 ILE B 195 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 14 SG ? ? A CYS 144 A CYS 155 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf2 disulf ? ? A CYS 31 SG ? ? ? 1_555 A CYS 123 SG ? ? A CYS 172 A CYS 264 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf3 disulf ? ? A CYS 102 SG ? ? ? 1_555 A CYS 115 SG ? ? A CYS 243 A CYS 256 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf4 disulf ? ? B CYS 3 SG ? ? ? 1_555 B CYS 14 SG ? ? B CYS 144 B CYS 155 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf5 disulf ? ? B CYS 31 SG ? ? ? 1_555 B CYS 123 SG ? ? B CYS 172 B CYS 264 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf6 disulf ? ? B CYS 102 SG ? ? ? 1_555 B CYS 115 SG ? ? B CYS 243 B CYS 256 1_555 ? ? ? ? ? ? ? 2.034 ? ? covale1 covale both ? A MSE 1 C ? ? ? 1_555 A PRO 2 N ? ? A MSE 142 A PRO 143 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale2 covale both ? A TRP 62 C ? ? ? 1_555 A MSE 63 N ? ? A TRP 203 A MSE 204 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? A MSE 63 C ? ? ? 1_555 A GLY 64 N ? ? A MSE 204 A GLY 205 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale4 covale both ? A LEU 82 C ? ? ? 1_555 A MSE 83 N ? ? A LEU 223 A MSE 224 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? A MSE 83 C ? ? ? 1_555 A PRO 84 N ? ? A MSE 224 A PRO 225 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale6 covale both ? B TRP 62 C ? ? ? 1_555 B MSE 63 N ? ? B TRP 203 B MSE 204 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale7 covale both ? B MSE 63 C ? ? ? 1_555 B GLY 64 N ? ? B MSE 204 B GLY 205 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale8 covale both ? B LEU 82 C ? ? ? 1_555 B MSE 83 N ? ? B LEU 223 B MSE 224 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale9 covale both ? B MSE 83 C ? ? ? 1_555 B PRO 84 N ? ? B MSE 224 B PRO 225 1_555 ? ? ? ? ? ? ? 1.342 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 1 ? . . . . MSE A 142 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 63 ? . . . . MSE A 204 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 83 ? . . . . MSE A 224 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE B 63 ? . . . . MSE B 204 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 5 MSE B 83 ? . . . . MSE B 224 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 6 CYS A 3 ? CYS A 14 ? CYS A 144 ? 1_555 CYS A 155 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS A 31 ? CYS A 123 ? CYS A 172 ? 1_555 CYS A 264 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS A 102 ? CYS A 115 ? CYS A 243 ? 1_555 CYS A 256 ? 1_555 SG SG . . . None 'Disulfide bridge' 9 CYS B 3 ? CYS B 14 ? CYS B 144 ? 1_555 CYS B 155 ? 1_555 SG SG . . . None 'Disulfide bridge' 10 CYS B 31 ? CYS B 123 ? CYS B 172 ? 1_555 CYS B 264 ? 1_555 SG SG . . . None 'Disulfide bridge' 11 CYS B 102 ? CYS B 115 ? CYS B 243 ? 1_555 CYS B 256 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 6 ? C ? 4 ? D ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel D 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 8 ? HIS A 10 ? ILE A 149 HIS A 151 A 2 ASN A 13 ? PHE A 17 ? ASN A 154 PHE A 158 A 3 PHE A 120 ? LYS A 126 ? PHE A 261 LYS A 267 A 4 PHE A 61 ? ARG A 67 ? PHE A 202 ARG A 208 A 5 LEU A 75 ? TRP A 76 ? LEU A 216 TRP A 217 B 1 LYS A 37 ? LEU A 38 ? LYS A 178 LEU A 179 B 2 PHE A 120 ? LYS A 126 ? PHE A 261 LYS A 267 B 3 PHE A 61 ? ARG A 67 ? PHE A 202 ARG A 208 B 4 THR A 101 ? GLN A 106 ? THR A 242 GLN A 247 B 5 ALA A 109 ? ASN A 114 ? ALA A 250 ASN A 255 B 6 VAL A 89 ? GLY A 91 ? VAL A 230 GLY A 232 C 1 ILE B 8 ? HIS B 10 ? ILE B 149 HIS B 151 C 2 ASN B 13 ? PHE B 17 ? ASN B 154 PHE B 158 C 3 PHE B 120 ? LYS B 126 ? PHE B 261 LYS B 267 C 4 LYS B 37 ? LEU B 38 ? LYS B 178 LEU B 179 D 1 ILE B 8 ? HIS B 10 ? ILE B 149 HIS B 151 D 2 ASN B 13 ? PHE B 17 ? ASN B 154 PHE B 158 D 3 PHE B 120 ? LYS B 126 ? PHE B 261 LYS B 267 D 4 PHE B 61 ? ARG B 67 ? PHE B 202 ARG B 208 D 5 THR B 101 ? GLN B 106 ? THR B 242 GLN B 247 D 6 ALA B 109 ? ASN B 114 ? ALA B 250 ASN B 255 D 7 VAL B 89 ? GLY B 91 ? VAL B 230 GLY B 232 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 8 ? N ILE A 149 O TYR A 15 ? O TYR A 156 A 2 3 N CYS A 14 ? N CYS A 155 O LYS A 125 ? O LYS A 266 A 3 4 O PHE A 120 ? O PHE A 261 N TRP A 62 ? N TRP A 203 A 4 5 N SER A 66 ? N SER A 207 O LEU A 75 ? O LEU A 216 B 1 2 N LYS A 37 ? N LYS A 178 O GLN A 124 ? O GLN A 265 B 2 3 O PHE A 120 ? O PHE A 261 N TRP A 62 ? N TRP A 203 B 3 4 N ARG A 67 ? N ARG A 208 O THR A 101 ? O THR A 242 B 4 5 N TYR A 104 ? N TYR A 245 O TYR A 111 ? O TYR A 252 B 5 6 O VAL A 110 ? O VAL A 251 N ARG A 90 ? N ARG A 231 C 1 2 N ILE B 8 ? N ILE B 149 O TYR B 15 ? O TYR B 156 C 2 3 N CYS B 14 ? N CYS B 155 O LYS B 125 ? O LYS B 266 C 3 4 O GLN B 124 ? O GLN B 265 N LYS B 37 ? N LYS B 178 D 1 2 N ILE B 8 ? N ILE B 149 O TYR B 15 ? O TYR B 156 D 2 3 N CYS B 14 ? N CYS B 155 O LYS B 125 ? O LYS B 266 D 3 4 O PHE B 120 ? O PHE B 261 N TRP B 62 ? N TRP B 203 D 4 5 N ARG B 67 ? N ARG B 208 O THR B 101 ? O THR B 242 D 5 6 N TYR B 104 ? N TYR B 245 O TYR B 111 ? O TYR B 252 D 6 7 O VAL B 110 ? O VAL B 251 N ARG B 90 ? N ARG B 231 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B EDO 2001 ? 7 'BINDING SITE FOR RESIDUE EDO B 2001' AC2 Software A EDO 2002 ? 3 'BINDING SITE FOR RESIDUE EDO A 2002' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 TRP A 9 ? TRP A 150 . ? 1_555 ? 2 AC1 7 GLY A 11 ? GLY A 152 . ? 1_555 ? 3 AC1 7 TRP B 9 ? TRP B 150 . ? 1_555 ? 4 AC1 7 HIS B 10 ? HIS B 151 . ? 1_555 ? 5 AC1 7 PHE B 49 ? PHE B 190 . ? 1_555 ? 6 AC1 7 HOH F . ? HOH B 1154 . ? 1_555 ? 7 AC1 7 HOH F . ? HOH B 1162 . ? 1_555 ? 8 AC2 3 TRP A 9 ? TRP A 150 . ? 1_555 ? 9 AC2 3 HIS A 10 ? HIS A 151 . ? 1_555 ? 10 AC2 3 TRP B 9 ? TRP B 150 . ? 1_555 ? # _pdbx_entry_details.entry_id 1YXJ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 147 ? ? 80.89 -12.46 2 1 SER A 196 ? ? 59.26 -122.61 3 1 ASP B 147 ? ? 83.29 -8.73 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 142 ? MET SELENOMETHIONINE 2 A MSE 63 A MSE 204 ? MET SELENOMETHIONINE 3 A MSE 83 A MSE 224 ? MET SELENOMETHIONINE 4 B MSE 63 B MSE 204 ? MET SELENOMETHIONINE 5 B MSE 83 B MSE 224 ? MET SELENOMETHIONINE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B MSE 142 ? B MSE 1 2 1 Y 1 B ARG 271 ? B ARG 130 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MET N N N N 240 MET CA C N S 241 MET C C N N 242 MET O O N N 243 MET CB C N N 244 MET CG C N N 245 MET SD S N N 246 MET CE C N N 247 MET OXT O N N 248 MET H H N N 249 MET H2 H N N 250 MET HA H N N 251 MET HB2 H N N 252 MET HB3 H N N 253 MET HG2 H N N 254 MET HG3 H N N 255 MET HE1 H N N 256 MET HE2 H N N 257 MET HE3 H N N 258 MET HXT H N N 259 MSE N N N N 260 MSE CA C N S 261 MSE C C N N 262 MSE O O N N 263 MSE OXT O N N 264 MSE CB C N N 265 MSE CG C N N 266 MSE SE SE N N 267 MSE CE C N N 268 MSE H H N N 269 MSE H2 H N N 270 MSE HA H N N 271 MSE HXT H N N 272 MSE HB2 H N N 273 MSE HB3 H N N 274 MSE HG2 H N N 275 MSE HG3 H N N 276 MSE HE1 H N N 277 MSE HE2 H N N 278 MSE HE3 H N N 279 PHE N N N N 280 PHE CA C N S 281 PHE C C N N 282 PHE O O N N 283 PHE CB C N N 284 PHE CG C Y N 285 PHE CD1 C Y N 286 PHE CD2 C Y N 287 PHE CE1 C Y N 288 PHE CE2 C Y N 289 PHE CZ C Y N 290 PHE OXT O N N 291 PHE H H N N 292 PHE H2 H N N 293 PHE HA H N N 294 PHE HB2 H N N 295 PHE HB3 H N N 296 PHE HD1 H N N 297 PHE HD2 H N N 298 PHE HE1 H N N 299 PHE HE2 H N N 300 PHE HZ H N N 301 PHE HXT H N N 302 PRO N N N N 303 PRO CA C N S 304 PRO C C N N 305 PRO O O N N 306 PRO CB C N N 307 PRO CG C N N 308 PRO CD C N N 309 PRO OXT O N N 310 PRO H H N N 311 PRO HA H N N 312 PRO HB2 H N N 313 PRO HB3 H N N 314 PRO HG2 H N N 315 PRO HG3 H N N 316 PRO HD2 H N N 317 PRO HD3 H N N 318 PRO HXT H N N 319 SER N N N N 320 SER CA C N S 321 SER C C N N 322 SER O O N N 323 SER CB C N N 324 SER OG O N N 325 SER OXT O N N 326 SER H H N N 327 SER H2 H N N 328 SER HA H N N 329 SER HB2 H N N 330 SER HB3 H N N 331 SER HG H N N 332 SER HXT H N N 333 THR N N N N 334 THR CA C N S 335 THR C C N N 336 THR O O N N 337 THR CB C N R 338 THR OG1 O N N 339 THR CG2 C N N 340 THR OXT O N N 341 THR H H N N 342 THR H2 H N N 343 THR HA H N N 344 THR HB H N N 345 THR HG1 H N N 346 THR HG21 H N N 347 THR HG22 H N N 348 THR HG23 H N N 349 THR HXT H N N 350 TRP N N N N 351 TRP CA C N S 352 TRP C C N N 353 TRP O O N N 354 TRP CB C N N 355 TRP CG C Y N 356 TRP CD1 C Y N 357 TRP CD2 C Y N 358 TRP NE1 N Y N 359 TRP CE2 C Y N 360 TRP CE3 C Y N 361 TRP CZ2 C Y N 362 TRP CZ3 C Y N 363 TRP CH2 C Y N 364 TRP OXT O N N 365 TRP H H N N 366 TRP H2 H N N 367 TRP HA H N N 368 TRP HB2 H N N 369 TRP HB3 H N N 370 TRP HD1 H N N 371 TRP HE1 H N N 372 TRP HE3 H N N 373 TRP HZ2 H N N 374 TRP HZ3 H N N 375 TRP HH2 H N N 376 TRP HXT H N N 377 TYR N N N N 378 TYR CA C N S 379 TYR C C N N 380 TYR O O N N 381 TYR CB C N N 382 TYR CG C Y N 383 TYR CD1 C Y N 384 TYR CD2 C Y N 385 TYR CE1 C Y N 386 TYR CE2 C Y N 387 TYR CZ C Y N 388 TYR OH O N N 389 TYR OXT O N N 390 TYR H H N N 391 TYR H2 H N N 392 TYR HA H N N 393 TYR HB2 H N N 394 TYR HB3 H N N 395 TYR HD1 H N N 396 TYR HD2 H N N 397 TYR HE1 H N N 398 TYR HE2 H N N 399 TYR HH H N N 400 TYR HXT H N N 401 VAL N N N N 402 VAL CA C N S 403 VAL C C N N 404 VAL O O N N 405 VAL CB C N N 406 VAL CG1 C N N 407 VAL CG2 C N N 408 VAL OXT O N N 409 VAL H H N N 410 VAL H2 H N N 411 VAL HA H N N 412 VAL HB H N N 413 VAL HG11 H N N 414 VAL HG12 H N N 415 VAL HG13 H N N 416 VAL HG21 H N N 417 VAL HG22 H N N 418 VAL HG23 H N N 419 VAL HXT H N N 420 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MET N CA sing N N 227 MET N H sing N N 228 MET N H2 sing N N 229 MET CA C sing N N 230 MET CA CB sing N N 231 MET CA HA sing N N 232 MET C O doub N N 233 MET C OXT sing N N 234 MET CB CG sing N N 235 MET CB HB2 sing N N 236 MET CB HB3 sing N N 237 MET CG SD sing N N 238 MET CG HG2 sing N N 239 MET CG HG3 sing N N 240 MET SD CE sing N N 241 MET CE HE1 sing N N 242 MET CE HE2 sing N N 243 MET CE HE3 sing N N 244 MET OXT HXT sing N N 245 MSE N CA sing N N 246 MSE N H sing N N 247 MSE N H2 sing N N 248 MSE CA C sing N N 249 MSE CA CB sing N N 250 MSE CA HA sing N N 251 MSE C O doub N N 252 MSE C OXT sing N N 253 MSE OXT HXT sing N N 254 MSE CB CG sing N N 255 MSE CB HB2 sing N N 256 MSE CB HB3 sing N N 257 MSE CG SE sing N N 258 MSE CG HG2 sing N N 259 MSE CG HG3 sing N N 260 MSE SE CE sing N N 261 MSE CE HE1 sing N N 262 MSE CE HE2 sing N N 263 MSE CE HE3 sing N N 264 PHE N CA sing N N 265 PHE N H sing N N 266 PHE N H2 sing N N 267 PHE CA C sing N N 268 PHE CA CB sing N N 269 PHE CA HA sing N N 270 PHE C O doub N N 271 PHE C OXT sing N N 272 PHE CB CG sing N N 273 PHE CB HB2 sing N N 274 PHE CB HB3 sing N N 275 PHE CG CD1 doub Y N 276 PHE CG CD2 sing Y N 277 PHE CD1 CE1 sing Y N 278 PHE CD1 HD1 sing N N 279 PHE CD2 CE2 doub Y N 280 PHE CD2 HD2 sing N N 281 PHE CE1 CZ doub Y N 282 PHE CE1 HE1 sing N N 283 PHE CE2 CZ sing Y N 284 PHE CE2 HE2 sing N N 285 PHE CZ HZ sing N N 286 PHE OXT HXT sing N N 287 PRO N CA sing N N 288 PRO N CD sing N N 289 PRO N H sing N N 290 PRO CA C sing N N 291 PRO CA CB sing N N 292 PRO CA HA sing N N 293 PRO C O doub N N 294 PRO C OXT sing N N 295 PRO CB CG sing N N 296 PRO CB HB2 sing N N 297 PRO CB HB3 sing N N 298 PRO CG CD sing N N 299 PRO CG HG2 sing N N 300 PRO CG HG3 sing N N 301 PRO CD HD2 sing N N 302 PRO CD HD3 sing N N 303 PRO OXT HXT sing N N 304 SER N CA sing N N 305 SER N H sing N N 306 SER N H2 sing N N 307 SER CA C sing N N 308 SER CA CB sing N N 309 SER CA HA sing N N 310 SER C O doub N N 311 SER C OXT sing N N 312 SER CB OG sing N N 313 SER CB HB2 sing N N 314 SER CB HB3 sing N N 315 SER OG HG sing N N 316 SER OXT HXT sing N N 317 THR N CA sing N N 318 THR N H sing N N 319 THR N H2 sing N N 320 THR CA C sing N N 321 THR CA CB sing N N 322 THR CA HA sing N N 323 THR C O doub N N 324 THR C OXT sing N N 325 THR CB OG1 sing N N 326 THR CB CG2 sing N N 327 THR CB HB sing N N 328 THR OG1 HG1 sing N N 329 THR CG2 HG21 sing N N 330 THR CG2 HG22 sing N N 331 THR CG2 HG23 sing N N 332 THR OXT HXT sing N N 333 TRP N CA sing N N 334 TRP N H sing N N 335 TRP N H2 sing N N 336 TRP CA C sing N N 337 TRP CA CB sing N N 338 TRP CA HA sing N N 339 TRP C O doub N N 340 TRP C OXT sing N N 341 TRP CB CG sing N N 342 TRP CB HB2 sing N N 343 TRP CB HB3 sing N N 344 TRP CG CD1 doub Y N 345 TRP CG CD2 sing Y N 346 TRP CD1 NE1 sing Y N 347 TRP CD1 HD1 sing N N 348 TRP CD2 CE2 doub Y N 349 TRP CD2 CE3 sing Y N 350 TRP NE1 CE2 sing Y N 351 TRP NE1 HE1 sing N N 352 TRP CE2 CZ2 sing Y N 353 TRP CE3 CZ3 doub Y N 354 TRP CE3 HE3 sing N N 355 TRP CZ2 CH2 doub Y N 356 TRP CZ2 HZ2 sing N N 357 TRP CZ3 CH2 sing Y N 358 TRP CZ3 HZ3 sing N N 359 TRP CH2 HH2 sing N N 360 TRP OXT HXT sing N N 361 TYR N CA sing N N 362 TYR N H sing N N 363 TYR N H2 sing N N 364 TYR CA C sing N N 365 TYR CA CB sing N N 366 TYR CA HA sing N N 367 TYR C O doub N N 368 TYR C OXT sing N N 369 TYR CB CG sing N N 370 TYR CB HB2 sing N N 371 TYR CB HB3 sing N N 372 TYR CG CD1 doub Y N 373 TYR CG CD2 sing Y N 374 TYR CD1 CE1 sing Y N 375 TYR CD1 HD1 sing N N 376 TYR CD2 CE2 doub Y N 377 TYR CD2 HD2 sing N N 378 TYR CE1 CZ doub Y N 379 TYR CE1 HE1 sing N N 380 TYR CE2 CZ sing Y N 381 TYR CE2 HE2 sing N N 382 TYR CZ OH sing N N 383 TYR OH HH sing N N 384 TYR OXT HXT sing N N 385 VAL N CA sing N N 386 VAL N H sing N N 387 VAL N H2 sing N N 388 VAL CA C sing N N 389 VAL CA CB sing N N 390 VAL CA HA sing N N 391 VAL C O doub N N 392 VAL C OXT sing N N 393 VAL CB CG1 sing N N 394 VAL CB CG2 sing N N 395 VAL CB HB sing N N 396 VAL CG1 HG11 sing N N 397 VAL CG1 HG12 sing N N 398 VAL CG1 HG13 sing N N 399 VAL CG2 HG21 sing N N 400 VAL CG2 HG22 sing N N 401 VAL CG2 HG23 sing N N 402 VAL OXT HXT sing N N 403 # _atom_sites.entry_id 1YXJ _atom_sites.fract_transf_matrix[1][1] 0.015965 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014529 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012637 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_