HEADER VIRUS 22-FEB-05 1YXN TITLE PSEUDO-ATOMIC MODEL OF A FIBERLESS ISOMETRIC VARIANT OF BACTERIOPHAGE TITLE 2 PHI29 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR HEAD PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: LATE PROTEIN GP8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS PHAGE PHI29; SOURCE 3 ORGANISM_TAXID: 10756; SOURCE 4 CELL_LINE: PHI29; SOURCE 5 GENE: 8; SOURCE 6 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1423 KEYWDS PHI29, CAPSID, ICOSAHEDRAL VIRUS CAPSID, HK97 FOLD, PHAGE, BACTERIAL KEYWDS 2 IMMUNO-GLOBULIN, BIG2, ICOSAHEDRAL VIRUS, VIRUS EXPDTA ELECTRON MICROSCOPY MDLTYP CA ATOMS ONLY, CHAIN A, B, C AUTHOR M.C.MORAIS,K.H.CHOI,J.S.KOTI,P.R.CHIPMAN,D.L.ANDERSON,M.G.ROSSMANN REVDAT 6 14-FEB-24 1YXN 1 REMARK REVDAT 5 06-NOV-19 1YXN 1 CRYST1 SCALE REVDAT 4 18-JUL-18 1YXN 1 REMARK REVDAT 3 24-FEB-09 1YXN 1 VERSN REVDAT 2 03-MAY-05 1YXN 1 REMARK REVDAT 1 26-APR-05 1YXN 0 JRNL AUTH M.C.MORAIS,K.H.CHOI,J.S.KOTI,P.R.CHIPMAN,D.L.ANDERSON, JRNL AUTH 2 M.G.ROSSMANN JRNL TITL CONSERVATION OF THE CAPSID STRUCTURE IN TAILED DSDNA JRNL TITL 2 BACTERIOPHAGES: THE PSEUDOATOMIC STRUCTURE OF PHI29 JRNL REF MOL.CELL V. 18 149 2005 JRNL REFN ISSN 1097-2765 JRNL PMID 15837419 JRNL DOI 10.1016/J.MOLCEL.2005.03.013 REMARK 2 REMARK 2 RESOLUTION. 7.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EMFIT, SITUS COLORES, SITUS COLORES, REMARK 3 EM3DR, PFT, POR REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : RIGID BODY REFINEMENT IN REAL REMARK 3 SPACE AGAINST LAPLACIAN FILTERED REMARK 3 EM DENSITY, USING THE PROGRAM REMARK 3 COLORES IN THE PACKAGE SITUS. REMARK 3 EACH MOLECULE IN THE T=3 REMARK 3 ASYMMETRIC UNIT WAS REFINED REMARK 3 SEPARATELY. REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : METHOD--6D SEARCH FOR EACH SYMMETRY RELATED REMARK 3 MOLECULE IN THE ICOSAHEDRAL ASYMMETRIC UNIT REFINEMENT PROTOCOL-- REMARK 3 RIGID BODY REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.842 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 7.900 REMARK 3 NUMBER OF PARTICLES : 5922 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: SOFTWARE USED INCLUDED P3DR (3D RECONSTRUCTIONS), REMARK 3 PFT (INITIAL ORIENTATION IMPROVEMENT), AND POR (FINAL REMARK 3 ORIENTATION REFINEMENT. REMARK 4 REMARK 4 1YXN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032041. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : FIBERLESS ISOMETRIC PHI29 REMARK 245 CAPSID REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : ELECTRON MICROSCOPY GRID - IN REMARK 245 VITREOUS ICE REMARK 245 SAMPLE VITRIFICATION DETAILS : FROZEN IN LIQUID ETHANE REMARK 245 SAMPLE BUFFER : TRIS-HCL REMARK 245 PH : 7.80 REMARK 245 SAMPLE DETAILS : THE CAPSID PROTEIN ASSEMBLES A REMARK 245 T=3 ICOSAHEDRAL VIRUS SHELL. THE VIRUS PARTICLE IS A PROTEIN REMARK 245 SHELL WITH ICOSAHEDRAL SYMMETRY. TO GENERATE THE COMPLETE REMARK 245 ICOSAHEDRAL PARTICLE, APPLY THE FOLLOWING 59 MATRICES TO THE REMARK 245 THREE CHAINS IN THE ICOSAHEDRAL ASYMMETRIC UNIT, AND COMBINE REMARK 245 WITH THE ORIGINAL COORDINATES OF THE ICOSAHEDRAL ASYMMETRIC UNIT: REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 100.00 REMARK 245 MICROSCOPE MODEL : FEI/PHILIPS CM200FEG/ST REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 38000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 2 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 2 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 3 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 3 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 3 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 4 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 4 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 4 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 5 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 5 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 5 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 6 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 6 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 6 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 7 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 7 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 7 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 8 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 8 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 8 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 9 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 9 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 9 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 10 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 11 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 11 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 12 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 12 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 12 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 13 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 13 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 13 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 14 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 14 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 14 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 15 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 15 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 15 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 16 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 16 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 16 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 17 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 17 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 17 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 18 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 18 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 18 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 19 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 19 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 19 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 20 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 20 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 20 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 21 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 21 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 21 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 22 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 22 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 22 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 23 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 23 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 24 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 24 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 24 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 25 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 25 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 25 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 26 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 26 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 26 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 27 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 27 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 27 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 28 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 28 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 28 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 29 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 29 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 29 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 30 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 30 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 30 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 31 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 32 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 32 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 33 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 33 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 33 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 34 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 34 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 35 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 35 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 36 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 36 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 36 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 37 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 37 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 37 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 38 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 38 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 38 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 39 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 39 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 39 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 40 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 40 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 40 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 41 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 41 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 41 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 42 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 42 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 42 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 43 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 43 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 43 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 44 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 44 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 44 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 45 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 45 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 45 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 46 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 46 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 46 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 47 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 47 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 48 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 48 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 48 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 49 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 49 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 49 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 50 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 50 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 50 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 51 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 51 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 51 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 52 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 52 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 52 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 53 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 53 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 53 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 54 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 54 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 54 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 55 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 55 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 55 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 56 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 56 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 57 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 57 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 57 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 59 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 59 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 59 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 60 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 60 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 60 -0.500000 -0.809017 -0.309017 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OHG RELATED DB: PDB REMARK 900 THE ATOMIC COORDINATES OF THE CAPSID PROTEIN OF HK97, WHICH WERE REMARK 900 FITTED INTO THE PHI29 CRYO-EM DENSITY AND CONSTITUTE ONE DOMAIN OF REMARK 900 THE PSEUDO-ATOMIC MODEL OF THE PHI29 CAPSID PROTEIN GP8. REMARK 900 RELATED ID: 1F00 RELATED DB: PDB REMARK 900 THE ATOMIC COORDINATES OF OF INTIMIN. RESIDUES 757-831, WHICH REMARK 900 COMPRISE THE BIG2 DOMAIN OF INTIMIN, WERE FITTED INTO THE PHI29 REMARK 900 CRYO-EM DENSITY AND CONSTITUTE ONE DOMAIN OF THE PSEUDO-ATOMIC REMARK 900 MODEL OF THE PHI29 CAPSID PROTEIN GP8. REMARK 900 RELATED ID: EMD-1116 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-1120 RELATED DB: EMDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT AN ALIGNMENT BETWEEN THE COORDINATE REMARK 999 C-ALPHA ATOMS AND THE SEQUENCE IS NOT POSSIBLE. REMARK 999 THE FOLLOWING IS THE ONE-LETTER SEQUENCE FOR THE PROTEIN REMARK 999 MODELED IN THIS STRUCTURE, SWISSPROT ENTRY P13849: REMARK 999 MRITFNDVKTSLGITESYDIVNAIRNSQGDNFKSYVPLATANNVAEVGAGILINQTVQND REMARK 999 FITSLVDRIGLVVIRQVSLNNPLKKFKKGQIPLGRTIEEIYTDITKEKQYDAEEAEQKVF REMARK 999 EREMPNVKTLFHERNRQGFYHQTIQDDSLKTAFVSWGNFESFVSSIINAIYNSAEVDEYE REMARK 999 YMKLLVDNYYSKGLFTTVKIDEPTSSTGALTEFVKKMRATARKLTLPQGSRDWNSMAVRT REMARK 999 RSYMEDLHLIIDADLEAELDVDVLAKAFNMNRTDFLGNVTVIDGFASTGLEAVLVDKDWF REMARK 999 MVYDNLHKMETVRNPRGLYWNYYYHVWQTLSVSRFANAVAFVSGDVPAVTQVIVSPNIAA REMARK 999 VKQGGQQQFTAYVRATNAKDHKVVWSVEGGSTGTAITGDGLLSVSGNEDNQLTVKATVDI REMARK 999 GTEDKPKLVVGEAVVSIRPNNASGGAQA DBREF 1YXN A 104 836 PDB 1YXN 1YXN 104 836 DBREF 1YXN B 104 836 PDB 1YXN 1YXN 104 836 DBREF 1YXN C 104 836 PDB 1YXN 1YXN 104 836 SEQRES 1 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 2 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 3 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 4 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 5 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 6 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 7 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 8 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 9 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 10 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 11 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 12 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 13 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 14 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 15 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 16 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 17 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 18 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 19 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 20 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 21 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 22 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 23 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 24 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 25 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 26 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 27 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 28 A 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 1 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 2 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 3 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 4 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 5 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 6 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 7 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 8 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 9 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 10 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 11 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 12 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 13 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 14 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 15 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 16 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 17 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 18 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 19 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 20 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 21 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 22 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 23 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 24 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 25 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 26 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 27 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 28 B 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 1 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 2 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 3 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 4 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 5 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 6 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 7 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 8 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 9 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 10 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 11 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 12 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 13 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 14 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 15 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 16 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 17 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 18 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 19 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 20 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 21 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 22 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 23 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 24 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 25 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 26 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 27 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 28 C 360 UNK UNK UNK UNK UNK UNK UNK UNK UNK CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000