data_1YYP # _entry.id 1YYP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YYP pdb_00001yyp 10.2210/pdb1yyp/pdb RCSB RCSB032079 ? ? WWPDB D_1000032079 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-12-27 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2018-01-24 6 'Structure model' 1 5 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Refinement description' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Structure summary' 7 6 'Structure model' 'Data collection' 8 6 'Structure model' 'Database references' 9 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' audit_author 3 6 'Structure model' chem_comp_atom 4 6 'Structure model' chem_comp_bond 5 6 'Structure model' database_2 6 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_audit_author.name' 2 6 'Structure model' '_database_2.pdbx_DOI' 3 6 'Structure model' '_database_2.pdbx_database_accession' 4 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 1YYP _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-02-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry N _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1T6L _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Appleton, B.A.' 1 'Brooks, J.' 2 'Loregian, A.' 3 'Filman, D.J.' 4 'Coen, D.M.' 5 'Hogle, J.M.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Crystal structure of the cytomegalovirus DNA polymerase subunit UL44 in complex with the C terminus from the catalytic subunit. Differences in structure and function relative to unliganded UL44. ; J.Biol.Chem. 281 5224 5232 2006 JBCHA3 US 0021-9258 0071 ? 16371349 10.1074/jbc.M506900200 1 'The cytomegalovirus DNA polymerase subunit UL44 forms a C clamp-shaped dimer' Mol.Cell 15 233 244 2004 MOCEFL US 1097-2765 2168 ? ? ? 2 ;Specific residues in the connector loop of the human cytomegalovirus DNA polymerase accessory protein UL44 are crucial for interaction with the UL54 catalytic subunit ; J.Virol. 78 9084 9092 2004 JOVIAM US 0022-538X 0825 ? ? ? 3 ;Residues of human cytomegalovirus DNA polymerase catalytic subunit UL54 that are necessary and sufficient for interaction with the accessory protein UL44 ; J.Virol. 78 158 167 2004 JOVIAM US 0022-538X 0825 ? ? ? 4 ;Physical and functional interaction of human cytomegalovirus DNA polymerase and its accessory protein (ICP36) expressed in insect cells ; J.Virol. 66 4126 4133 1992 JOVIAM US 0022-538X 0825 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Appleton, B.A.' 1 ? primary 'Brooks, J.' 2 ? primary 'Loregian, A.' 3 ? primary 'Filman, D.J.' 4 ? primary 'Coen, D.M.' 5 ? primary 'Hogle, J.M.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase processivity factor' 32576.506 1 ? ? 'N-TERMINAL DOMAIN' ? 2 polymer syn 'DNA polymerase' 2585.077 1 2.7.7.7 ? 'C-TERMINAL 22 RESIDUES' ? 3 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 5 water nat water 18.015 48 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Polymerase accessory protein, PAP, ICP36 protein' 2 POL # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MDRKTRLSEPPTLALRLKPYKTAIQQLRSVIRALKENTTVTFLPTPSLILQTVRSHCVSKITFNSSCLYITDKSFQPKTI NNSTPLLGNFMYLTSSKDLTKFYVQDISDLSAKISMCAPDFNMEFSSACVHGQDIVRESENSAVHVDLDFGVVADLLKWI GPHTRVKRNVKKAPCPTGTVQILVHAGPPAIKFILTNGSELEFTSNNRVSFHGVKNMRINVQLKNFYQTLLNCAVTKLPC TLRIVTEHDTLLYVASRNGLFAVENFLTEEPFQRGDPFDKNYVGNSGKSR ; ;MDRKTRLSEPPTLALRLKPYKTAIQQLRSVIRALKENTTVTFLPTPSLILQTVRSHCVSKITFNSSCLYITDKSFQPKTI NNSTPLLGNFMYLTSSKDLTKFYVQDISDLSAKISMCAPDFNMEFSSACVHGQDIVRESENSAVHVDLDFGVVADLLKWI GPHTRVKRNVKKAPCPTGTVQILVHAGPPAIKFILTNGSELEFTSNNRVSFHGVKNMRINVQLKNFYQTLLNCAVTKLPC TLRIVTEHDTLLYVASRNGLFAVENFLTEEPFQRGDPFDKNYVGNSGKSR ; A ? 2 'polypeptide(L)' no no LPRRLHLEPAFLPYSVKAHECC LPRRLHLEPAFLPYSVKAHECC B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 1,2-ETHANEDIOL EDO 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 ARG n 1 4 LYS n 1 5 THR n 1 6 ARG n 1 7 LEU n 1 8 SER n 1 9 GLU n 1 10 PRO n 1 11 PRO n 1 12 THR n 1 13 LEU n 1 14 ALA n 1 15 LEU n 1 16 ARG n 1 17 LEU n 1 18 LYS n 1 19 PRO n 1 20 TYR n 1 21 LYS n 1 22 THR n 1 23 ALA n 1 24 ILE n 1 25 GLN n 1 26 GLN n 1 27 LEU n 1 28 ARG n 1 29 SER n 1 30 VAL n 1 31 ILE n 1 32 ARG n 1 33 ALA n 1 34 LEU n 1 35 LYS n 1 36 GLU n 1 37 ASN n 1 38 THR n 1 39 THR n 1 40 VAL n 1 41 THR n 1 42 PHE n 1 43 LEU n 1 44 PRO n 1 45 THR n 1 46 PRO n 1 47 SER n 1 48 LEU n 1 49 ILE n 1 50 LEU n 1 51 GLN n 1 52 THR n 1 53 VAL n 1 54 ARG n 1 55 SER n 1 56 HIS n 1 57 CYS n 1 58 VAL n 1 59 SER n 1 60 LYS n 1 61 ILE n 1 62 THR n 1 63 PHE n 1 64 ASN n 1 65 SER n 1 66 SER n 1 67 CYS n 1 68 LEU n 1 69 TYR n 1 70 ILE n 1 71 THR n 1 72 ASP n 1 73 LYS n 1 74 SER n 1 75 PHE n 1 76 GLN n 1 77 PRO n 1 78 LYS n 1 79 THR n 1 80 ILE n 1 81 ASN n 1 82 ASN n 1 83 SER n 1 84 THR n 1 85 PRO n 1 86 LEU n 1 87 LEU n 1 88 GLY n 1 89 ASN n 1 90 PHE n 1 91 MET n 1 92 TYR n 1 93 LEU n 1 94 THR n 1 95 SER n 1 96 SER n 1 97 LYS n 1 98 ASP n 1 99 LEU n 1 100 THR n 1 101 LYS n 1 102 PHE n 1 103 TYR n 1 104 VAL n 1 105 GLN n 1 106 ASP n 1 107 ILE n 1 108 SER n 1 109 ASP n 1 110 LEU n 1 111 SER n 1 112 ALA n 1 113 LYS n 1 114 ILE n 1 115 SER n 1 116 MET n 1 117 CYS n 1 118 ALA n 1 119 PRO n 1 120 ASP n 1 121 PHE n 1 122 ASN n 1 123 MET n 1 124 GLU n 1 125 PHE n 1 126 SER n 1 127 SER n 1 128 ALA n 1 129 CYS n 1 130 VAL n 1 131 HIS n 1 132 GLY n 1 133 GLN n 1 134 ASP n 1 135 ILE n 1 136 VAL n 1 137 ARG n 1 138 GLU n 1 139 SER n 1 140 GLU n 1 141 ASN n 1 142 SER n 1 143 ALA n 1 144 VAL n 1 145 HIS n 1 146 VAL n 1 147 ASP n 1 148 LEU n 1 149 ASP n 1 150 PHE n 1 151 GLY n 1 152 VAL n 1 153 VAL n 1 154 ALA n 1 155 ASP n 1 156 LEU n 1 157 LEU n 1 158 LYS n 1 159 TRP n 1 160 ILE n 1 161 GLY n 1 162 PRO n 1 163 HIS n 1 164 THR n 1 165 ARG n 1 166 VAL n 1 167 LYS n 1 168 ARG n 1 169 ASN n 1 170 VAL n 1 171 LYS n 1 172 LYS n 1 173 ALA n 1 174 PRO n 1 175 CYS n 1 176 PRO n 1 177 THR n 1 178 GLY n 1 179 THR n 1 180 VAL n 1 181 GLN n 1 182 ILE n 1 183 LEU n 1 184 VAL n 1 185 HIS n 1 186 ALA n 1 187 GLY n 1 188 PRO n 1 189 PRO n 1 190 ALA n 1 191 ILE n 1 192 LYS n 1 193 PHE n 1 194 ILE n 1 195 LEU n 1 196 THR n 1 197 ASN n 1 198 GLY n 1 199 SER n 1 200 GLU n 1 201 LEU n 1 202 GLU n 1 203 PHE n 1 204 THR n 1 205 SER n 1 206 ASN n 1 207 ASN n 1 208 ARG n 1 209 VAL n 1 210 SER n 1 211 PHE n 1 212 HIS n 1 213 GLY n 1 214 VAL n 1 215 LYS n 1 216 ASN n 1 217 MET n 1 218 ARG n 1 219 ILE n 1 220 ASN n 1 221 VAL n 1 222 GLN n 1 223 LEU n 1 224 LYS n 1 225 ASN n 1 226 PHE n 1 227 TYR n 1 228 GLN n 1 229 THR n 1 230 LEU n 1 231 LEU n 1 232 ASN n 1 233 CYS n 1 234 ALA n 1 235 VAL n 1 236 THR n 1 237 LYS n 1 238 LEU n 1 239 PRO n 1 240 CYS n 1 241 THR n 1 242 LEU n 1 243 ARG n 1 244 ILE n 1 245 VAL n 1 246 THR n 1 247 GLU n 1 248 HIS n 1 249 ASP n 1 250 THR n 1 251 LEU n 1 252 LEU n 1 253 TYR n 1 254 VAL n 1 255 ALA n 1 256 SER n 1 257 ARG n 1 258 ASN n 1 259 GLY n 1 260 LEU n 1 261 PHE n 1 262 ALA n 1 263 VAL n 1 264 GLU n 1 265 ASN n 1 266 PHE n 1 267 LEU n 1 268 THR n 1 269 GLU n 1 270 GLU n 1 271 PRO n 1 272 PHE n 1 273 GLN n 1 274 ARG n 1 275 GLY n 1 276 ASP n 1 277 PRO n 1 278 PHE n 1 279 ASP n 1 280 LYS n 1 281 ASN n 1 282 TYR n 1 283 VAL n 1 284 GLY n 1 285 ASN n 1 286 SER n 1 287 GLY n 1 288 LYS n 1 289 SER n 1 290 ARG n 2 1 LEU n 2 2 PRO n 2 3 ARG n 2 4 ARG n 2 5 LEU n 2 6 HIS n 2 7 LEU n 2 8 GLU n 2 9 PRO n 2 10 ALA n 2 11 PHE n 2 12 LEU n 2 13 PRO n 2 14 TYR n 2 15 SER n 2 16 VAL n 2 17 LYS n 2 18 ALA n 2 19 HIS n 2 20 GLU n 2 21 CYS n 2 22 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Human cytomegalovirus' _entity_src_gen.gene_src_genus Cytomegalovirus _entity_src_gen.pdbx_gene_src_gene UL44 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human herpesvirus 5' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10359 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pDEST15 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ASP 2 2 ? ? ? A . n A 1 3 ARG 3 3 ? ? ? A . n A 1 4 LYS 4 4 ? ? ? A . n A 1 5 THR 5 5 ? ? ? A . n A 1 6 ARG 6 6 ? ? ? A . n A 1 7 LEU 7 7 ? ? ? A . n A 1 8 SER 8 8 ? ? ? A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 HIS 56 56 56 HIS HIS A . n A 1 57 CYS 57 57 57 CYS CYS A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 PHE 75 75 75 PHE PHE A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 MET 91 91 91 MET MET A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 PHE 102 102 102 PHE PHE A . n A 1 103 TYR 103 103 103 TYR TYR A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 GLN 105 105 105 GLN GLN A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 MET 116 116 116 MET MET A . n A 1 117 CYS 117 117 117 CYS CYS A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 PRO 119 119 119 PRO PRO A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 PHE 121 121 121 PHE PHE A . n A 1 122 ASN 122 122 122 ASN ASN A . n A 1 123 MET 123 123 123 MET MET A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 PHE 125 125 125 PHE PHE A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 ALA 128 128 128 ALA ALA A . n A 1 129 CYS 129 129 129 CYS CYS A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 HIS 131 131 131 HIS HIS A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 GLN 133 133 133 GLN GLN A . n A 1 134 ASP 134 134 134 ASP ASP A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 ARG 137 137 137 ARG ARG A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 GLU 140 140 140 GLU GLU A . n A 1 141 ASN 141 141 141 ASN ASN A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 ALA 143 143 143 ALA ALA A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 HIS 145 145 145 HIS HIS A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 ASP 147 147 147 ASP ASP A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 ASP 149 149 149 ASP ASP A . n A 1 150 PHE 150 150 150 PHE PHE A . n A 1 151 GLY 151 151 151 GLY GLY A . n A 1 152 VAL 152 152 152 VAL VAL A . n A 1 153 VAL 153 153 153 VAL VAL A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 ASP 155 155 155 ASP ASP A . n A 1 156 LEU 156 156 156 LEU LEU A . n A 1 157 LEU 157 157 157 LEU LEU A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 TRP 159 159 159 TRP TRP A . n A 1 160 ILE 160 160 160 ILE ILE A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 PRO 162 162 162 PRO PRO A . n A 1 163 HIS 163 163 ? ? ? A . n A 1 164 THR 164 164 ? ? ? A . n A 1 165 ARG 165 165 ? ? ? A . n A 1 166 VAL 166 166 ? ? ? A . n A 1 167 LYS 167 167 ? ? ? A . n A 1 168 ARG 168 168 ? ? ? A . n A 1 169 ASN 169 169 ? ? ? A . n A 1 170 VAL 170 170 ? ? ? A . n A 1 171 LYS 171 171 ? ? ? A . n A 1 172 LYS 172 172 ? ? ? A . n A 1 173 ALA 173 173 ? ? ? A . n A 1 174 PRO 174 174 ? ? ? A . n A 1 175 CYS 175 175 ? ? ? A . n A 1 176 PRO 176 176 ? ? ? A . n A 1 177 THR 177 177 177 THR THR A . n A 1 178 GLY 178 178 178 GLY GLY A . n A 1 179 THR 179 179 179 THR THR A . n A 1 180 VAL 180 180 180 VAL VAL A . n A 1 181 GLN 181 181 181 GLN GLN A . n A 1 182 ILE 182 182 182 ILE ILE A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 VAL 184 184 184 VAL VAL A . n A 1 185 HIS 185 185 185 HIS HIS A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 GLY 187 187 187 GLY GLY A . n A 1 188 PRO 188 188 188 PRO PRO A . n A 1 189 PRO 189 189 189 PRO PRO A . n A 1 190 ALA 190 190 190 ALA ALA A . n A 1 191 ILE 191 191 191 ILE ILE A . n A 1 192 LYS 192 192 192 LYS LYS A . n A 1 193 PHE 193 193 193 PHE PHE A . n A 1 194 ILE 194 194 194 ILE ILE A . n A 1 195 LEU 195 195 195 LEU LEU A . n A 1 196 THR 196 196 196 THR THR A . n A 1 197 ASN 197 197 197 ASN ASN A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 SER 199 199 199 SER SER A . n A 1 200 GLU 200 200 200 GLU GLU A . n A 1 201 LEU 201 201 201 LEU LEU A . n A 1 202 GLU 202 202 202 GLU GLU A . n A 1 203 PHE 203 203 203 PHE PHE A . n A 1 204 THR 204 204 204 THR THR A . n A 1 205 SER 205 205 205 SER SER A . n A 1 206 ASN 206 206 206 ASN ASN A . n A 1 207 ASN 207 207 207 ASN ASN A . n A 1 208 ARG 208 208 208 ARG ARG A . n A 1 209 VAL 209 209 209 VAL VAL A . n A 1 210 SER 210 210 210 SER SER A . n A 1 211 PHE 211 211 211 PHE PHE A . n A 1 212 HIS 212 212 212 HIS HIS A . n A 1 213 GLY 213 213 213 GLY GLY A . n A 1 214 VAL 214 214 214 VAL VAL A . n A 1 215 LYS 215 215 215 LYS LYS A . n A 1 216 ASN 216 216 216 ASN ASN A . n A 1 217 MET 217 217 217 MET MET A . n A 1 218 ARG 218 218 218 ARG ARG A . n A 1 219 ILE 219 219 219 ILE ILE A . n A 1 220 ASN 220 220 220 ASN ASN A . n A 1 221 VAL 221 221 221 VAL VAL A . n A 1 222 GLN 222 222 222 GLN GLN A . n A 1 223 LEU 223 223 223 LEU LEU A . n A 1 224 LYS 224 224 224 LYS LYS A . n A 1 225 ASN 225 225 225 ASN ASN A . n A 1 226 PHE 226 226 226 PHE PHE A . n A 1 227 TYR 227 227 227 TYR TYR A . n A 1 228 GLN 228 228 228 GLN GLN A . n A 1 229 THR 229 229 229 THR THR A . n A 1 230 LEU 230 230 230 LEU LEU A . n A 1 231 LEU 231 231 231 LEU LEU A . n A 1 232 ASN 232 232 232 ASN ASN A . n A 1 233 CYS 233 233 233 CYS CYS A . n A 1 234 ALA 234 234 234 ALA ALA A . n A 1 235 VAL 235 235 235 VAL VAL A . n A 1 236 THR 236 236 236 THR THR A . n A 1 237 LYS 237 237 237 LYS LYS A . n A 1 238 LEU 238 238 238 LEU LEU A . n A 1 239 PRO 239 239 239 PRO PRO A . n A 1 240 CYS 240 240 240 CYS CYS A . n A 1 241 THR 241 241 241 THR THR A . n A 1 242 LEU 242 242 242 LEU LEU A . n A 1 243 ARG 243 243 243 ARG ARG A . n A 1 244 ILE 244 244 244 ILE ILE A . n A 1 245 VAL 245 245 245 VAL VAL A . n A 1 246 THR 246 246 246 THR THR A . n A 1 247 GLU 247 247 247 GLU GLU A . n A 1 248 HIS 248 248 248 HIS HIS A . n A 1 249 ASP 249 249 249 ASP ASP A . n A 1 250 THR 250 250 250 THR THR A . n A 1 251 LEU 251 251 251 LEU LEU A . n A 1 252 LEU 252 252 252 LEU LEU A . n A 1 253 TYR 253 253 253 TYR TYR A . n A 1 254 VAL 254 254 254 VAL VAL A . n A 1 255 ALA 255 255 255 ALA ALA A . n A 1 256 SER 256 256 256 SER SER A . n A 1 257 ARG 257 257 257 ARG ARG A . n A 1 258 ASN 258 258 258 ASN ASN A . n A 1 259 GLY 259 259 259 GLY GLY A . n A 1 260 LEU 260 260 260 LEU LEU A . n A 1 261 PHE 261 261 261 PHE PHE A . n A 1 262 ALA 262 262 262 ALA ALA A . n A 1 263 VAL 263 263 263 VAL VAL A . n A 1 264 GLU 264 264 264 GLU GLU A . n A 1 265 ASN 265 265 265 ASN ASN A . n A 1 266 PHE 266 266 266 PHE PHE A . n A 1 267 LEU 267 267 267 LEU LEU A . n A 1 268 THR 268 268 268 THR THR A . n A 1 269 GLU 269 269 269 GLU GLU A . n A 1 270 GLU 270 270 270 GLU GLU A . n A 1 271 PRO 271 271 271 PRO PRO A . n A 1 272 PHE 272 272 ? ? ? A . n A 1 273 GLN 273 273 ? ? ? A . n A 1 274 ARG 274 274 ? ? ? A . n A 1 275 GLY 275 275 ? ? ? A . n A 1 276 ASP 276 276 ? ? ? A . n A 1 277 PRO 277 277 ? ? ? A . n A 1 278 PHE 278 278 ? ? ? A . n A 1 279 ASP 279 279 ? ? ? A . n A 1 280 LYS 280 280 ? ? ? A . n A 1 281 ASN 281 281 ? ? ? A . n A 1 282 TYR 282 282 ? ? ? A . n A 1 283 VAL 283 283 ? ? ? A . n A 1 284 GLY 284 284 ? ? ? A . n A 1 285 ASN 285 285 ? ? ? A . n A 1 286 SER 286 286 ? ? ? A . n A 1 287 GLY 287 287 ? ? ? A . n A 1 288 LYS 288 288 ? ? ? A . n A 1 289 SER 289 289 ? ? ? A . n A 1 290 ARG 290 290 ? ? ? A . n B 2 1 LEU 1 1221 ? ? ? B . n B 2 2 PRO 2 1222 ? ? ? B . n B 2 3 ARG 3 1223 1223 ARG ARG B . n B 2 4 ARG 4 1224 1224 ARG ARG B . n B 2 5 LEU 5 1225 1225 LEU LEU B . n B 2 6 HIS 6 1226 1226 HIS HIS B . n B 2 7 LEU 7 1227 1227 LEU LEU B . n B 2 8 GLU 8 1228 1228 GLU GLU B . n B 2 9 PRO 9 1229 1229 PRO PRO B . n B 2 10 ALA 10 1230 1230 ALA ALA B . n B 2 11 PHE 11 1231 1231 PHE PHE B . n B 2 12 LEU 12 1232 1232 LEU LEU B . n B 2 13 PRO 13 1233 1233 PRO PRO B . n B 2 14 TYR 14 1234 1234 TYR TYR B . n B 2 15 SER 15 1235 1235 SER SER B . n B 2 16 VAL 16 1236 1236 VAL VAL B . n B 2 17 LYS 17 1237 1237 LYS LYS B . n B 2 18 ALA 18 1238 1238 ALA ALA B . n B 2 19 HIS 19 1239 1239 HIS HIS B . n B 2 20 GLU 20 1240 1240 GLU GLU B . n B 2 21 CYS 21 1241 1241 CYS CYS B . n B 2 22 CYS 22 1242 1242 CYS CYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 701 701 SO4 SO4 A . D 3 SO4 1 702 702 SO4 SO4 A . E 4 EDO 1 801 801 EDO EDO A . F 4 EDO 1 802 802 EDO EDO A . G 4 EDO 1 803 803 EDO EDO A . H 3 SO4 1 703 703 SO4 SO4 B . I 3 SO4 1 704 704 SO4 SO4 B . J 5 HOH 1 401 401 HOH HOH A . J 5 HOH 2 402 402 HOH HOH A . J 5 HOH 3 404 404 HOH HOH A . J 5 HOH 4 405 405 HOH HOH A . J 5 HOH 5 406 406 HOH HOH A . J 5 HOH 6 407 407 HOH HOH A . J 5 HOH 7 408 408 HOH HOH A . J 5 HOH 8 409 409 HOH HOH A . J 5 HOH 9 410 410 HOH HOH A . J 5 HOH 10 411 411 HOH HOH A . J 5 HOH 11 413 413 HOH HOH A . J 5 HOH 12 414 414 HOH HOH A . J 5 HOH 13 415 415 HOH HOH A . J 5 HOH 14 416 416 HOH HOH A . J 5 HOH 15 417 417 HOH HOH A . J 5 HOH 16 418 418 HOH HOH A . J 5 HOH 17 419 419 HOH HOH A . J 5 HOH 18 420 420 HOH HOH A . J 5 HOH 19 421 421 HOH HOH A . J 5 HOH 20 422 422 HOH HOH A . J 5 HOH 21 423 423 HOH HOH A . J 5 HOH 22 424 424 HOH HOH A . J 5 HOH 23 425 425 HOH HOH A . J 5 HOH 24 426 426 HOH HOH A . J 5 HOH 25 427 427 HOH HOH A . J 5 HOH 26 428 428 HOH HOH A . J 5 HOH 27 429 429 HOH HOH A . J 5 HOH 28 430 430 HOH HOH A . J 5 HOH 29 433 433 HOH HOH A . J 5 HOH 30 434 434 HOH HOH A . J 5 HOH 31 435 435 HOH HOH A . J 5 HOH 32 436 436 HOH HOH A . J 5 HOH 33 437 437 HOH HOH A . J 5 HOH 34 438 438 HOH HOH A . J 5 HOH 35 439 439 HOH HOH A . J 5 HOH 36 441 441 HOH HOH A . J 5 HOH 37 442 442 HOH HOH A . J 5 HOH 38 443 443 HOH HOH A . J 5 HOH 39 444 444 HOH HOH A . J 5 HOH 40 446 446 HOH HOH A . J 5 HOH 41 447 447 HOH HOH A . J 5 HOH 42 448 448 HOH HOH A . K 5 HOH 1 403 403 HOH HOH B . K 5 HOH 2 412 412 HOH HOH B . K 5 HOH 3 431 431 HOH HOH B . K 5 HOH 4 432 432 HOH HOH B . K 5 HOH 5 440 440 HOH HOH B . K 5 HOH 6 445 445 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 140 ? CG ? A GLU 140 CG 2 1 Y 1 A GLU 140 ? CD ? A GLU 140 CD 3 1 Y 1 A GLU 140 ? OE1 ? A GLU 140 OE1 4 1 Y 1 A GLU 140 ? OE2 ? A GLU 140 OE2 5 1 Y 1 A THR 177 ? OG1 ? A THR 177 OG1 6 1 Y 1 A THR 177 ? CG2 ? A THR 177 CG2 7 1 Y 1 A GLU 247 ? CD ? A GLU 247 CD 8 1 Y 1 A GLU 247 ? OE1 ? A GLU 247 OE1 9 1 Y 1 A GLU 247 ? OE2 ? A GLU 247 OE2 10 1 Y 1 B GLU 1240 ? CG ? B GLU 20 CG 11 1 Y 1 B GLU 1240 ? CD ? B GLU 20 CD 12 1 Y 1 B GLU 1240 ? OE1 ? B GLU 20 OE1 13 1 Y 1 B GLU 1240 ? OE2 ? B GLU 20 OE2 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 SOLVE 2.02 29-Jan-2002 program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 RESOLVE 2.02 08-Feb-2001 program 'Terwilliger, T. C' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 REFMAC 5.1.19 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 5 # _cell.length_a 91.787 _cell.length_b 127.592 _cell.length_c 65.975 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 1YYP _cell.pdbx_unique_axis ? _cell.Z_PDB 8 # _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.entry_id 1YYP _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 20 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 1YYP _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.8 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '2 M ammonium sulfate, 100 mM phosphate-citrate, and 10 mM DTT , pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 113 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-2 _diffrn_detector.pdbx_collection_date 2003-08-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9793 1.0 2 0.9794 1.0 3 1.008 1.0 4 0.9537 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9793, 0.9794, 1.008, 0.9537' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 1YYP _reflns.d_resolution_low 30.00 _reflns.d_resolution_high 2.50 _reflns.number_obs 13802 _reflns.percent_possible_obs 99.900 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_chi_squared 0.966 _reflns.pdbx_redundancy 14.2 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI 44.8 _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.number_all 13819 _reflns.B_iso_Wilson_estimate 53.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_low 2.61 _reflns_shell.d_res_high 2.50 _reflns_shell.number_measured_obs 1697 _reflns_shell.percent_possible_obs 100.000 _reflns_shell.Rmerge_I_obs 0.203 _reflns_shell.pdbx_chi_squared 0.771 _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_obs ? _reflns_shell.meanI_over_sigI_obs 13.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.percent_possible_all 100 _reflns_shell.number_unique_all 1697 _reflns_shell.number_measured_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 2.500 _refine.ls_d_res_low 30.000 _refine.ls_percent_reflns_obs 99.770 _refine.ls_number_reflns_obs 13046 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_all 0.197 _refine.ls_R_factor_R_work 0.195 _refine.ls_R_factor_R_free 0.227 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 687 _refine.B_iso_mean 32.660 _refine.aniso_B[1][1] 1.010 _refine.aniso_B[2][2] -0.270 _refine.aniso_B[3][3] -0.740 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.926 _refine.pdbx_overall_ESU_R 0.354 _refine.pdbx_overall_ESU_R_Free 0.237 _refine.overall_SU_ML 0.157 _refine.overall_SU_B 7.010 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.entry_id 1YYP _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.197 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2105 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 48 _refine_hist.number_atoms_total 2185 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 30.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2174 0.012 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2950 1.880 1.968 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 266 0.349 5.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 350 0.125 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1582 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 871 0.235 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 88 0.125 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 42 0.251 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.468 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1349 3.285 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2202 5.670 4.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 825 7.746 4.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 748 10.784 6.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.500 _refine_ls_shell.d_res_low 2.634 _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 1870 _refine_ls_shell.R_factor_R_work 0.203 _refine_ls_shell.R_factor_R_free 0.304 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 106 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 1YYP _struct.title 'Crystal structure of cytomegalovirus UL44 bound to C-terminal peptide from CMV UL54' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YYP _struct_keywords.pdbx_keywords REPLICATION/TRANSFERASE _struct_keywords.text 'PROCESSIVITY FOLD (SAME FOLD AS HSV UL42, PCNA, AND HOMOTRIMERIC SLIDING CLAMPS), REPLICATION-TRANSFERASE COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 3 ? I N N 3 ? J N N 5 ? K N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP VPAP_HCMVA P16790 1 ;MDRKTRLSEPPTLALRLKPYKTAIQQLRSVIRALKENTTVTFLPTPSLILQTVRSHCVSKITFNSSCLYITDKSFQPKTI NNSTPLLGNFMYLTSSKDLTKFYVQDISDLSAKISMCAPDFNMEFSSACVHGQDIVRESENSAVHVDLDFGVVADLLKWI GPHTRVKRNVKKAPCPTGTVQILVHAGPPAIKFILTNGSELEFTANNRVSFHGVKNMRINVQLKNFYQTLLNCAVTKLPC TLRIVTEHDTLLYVASRNGLFAVENFLTEEPFQRGDPFDKNYVGNSGKSRGGGGGGGSLSSLANAGGLHDDGPGLDNDLM NEPMGLGGLGGGGGGGGKKHDRGGGGGSGTRKMSSGGGGGDHDHGLSSKEKYEQHKITSYLTSKGGSGGGGGGGGGGLDR NSGNYFNDAKEESDSEDSVTFEFVPNTKKQKCG ; 1 ? 2 UNP DPOL_HCMVA P08546 2 LPRRLHLEPAFLPYSVKAHECC 1221 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1YYP A 1 ? 290 ? P16790 1 ? 290 ? 1 290 2 2 1YYP B 1 ? 22 ? P08546 1221 ? 1242 ? 1221 1242 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1YYP _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 205 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P16790 _struct_ref_seq_dif.db_mon_id ALA _struct_ref_seq_dif.pdbx_seq_db_seq_num 205 _struct_ref_seq_dif.details 'SEE REMARK 999' _struct_ref_seq_dif.pdbx_auth_seq_num 205 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_755 -x+2,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 183.5740000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 32.9875000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 16 ? LEU A 27 ? ARG A 16 LEU A 27 1 ? 12 HELX_P HELX_P2 2 LEU A 27 ? ALA A 33 ? LEU A 27 ALA A 33 1 ? 7 HELX_P HELX_P3 3 PHE A 90 ? THR A 94 ? PHE A 90 THR A 94 1 ? 5 HELX_P HELX_P4 4 ASP A 149 ? GLY A 161 ? ASP A 149 GLY A 161 1 ? 13 HELX_P HELX_P5 5 LEU A 223 ? VAL A 235 ? LEU A 223 VAL A 235 1 ? 13 HELX_P HELX_P6 6 GLU B 8 ? PRO B 13 ? GLU B 1228 PRO B 1233 5 ? 6 HELX_P HELX_P7 7 HIS B 19 ? CYS B 21 ? HIS B 1239 CYS B 1241 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 THR 45 A . ? THR 45 A PRO 46 A ? PRO 46 A 1 -0.06 2 GLY 187 A . ? GLY 187 A PRO 188 A ? PRO 188 A 1 0.05 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 9 ? C ? 2 ? D ? 2 ? E ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 68 ? ILE A 70 ? LEU A 68 ILE A 70 A 2 THR A 12 ? LEU A 15 ? THR A 12 LEU A 15 A 3 LYS A 101 ? GLN A 105 ? LYS A 101 GLN A 105 A 4 SER A 111 ? ALA A 118 ? SER A 111 ALA A 118 A 5 PHE A 121 ? ALA A 128 ? PHE A 121 ALA A 128 B 1 LYS A 78 ? ASN A 81 ? LYS A 78 ASN A 81 B 2 THR A 38 ? LEU A 43 ? THR A 38 LEU A 43 B 3 SER A 47 ? ARG A 54 ? SER A 47 ARG A 54 B 4 CYS A 57 ? PHE A 63 ? CYS A 57 PHE A 63 B 5 PHE A 261 ? THR A 268 ? PHE A 261 THR A 268 B 6 LEU A 251 ? ARG A 257 ? LEU A 251 ARG A 257 B 7 CYS A 240 ? VAL A 245 ? CYS A 240 VAL A 245 B 8 VAL A 144 ? LEU A 148 ? VAL A 144 LEU A 148 B 9 VAL A 209 ? GLY A 213 ? VAL A 209 GLY A 213 C 1 SER A 83 ? THR A 84 ? SER A 83 THR A 84 C 2 GLY A 88 ? ASN A 89 ? GLY A 88 ASN A 89 D 1 ASP A 134 ? VAL A 136 ? ASP A 134 VAL A 136 D 2 SER B 15 ? LYS B 17 ? SER B 1235 LYS B 1237 E 1 GLU A 200 ? THR A 204 ? GLU A 200 THR A 204 E 2 ALA A 190 ? LEU A 195 ? ALA A 190 LEU A 195 E 3 THR A 179 ? HIS A 185 ? THR A 179 HIS A 185 E 4 MET A 217 ? GLN A 222 ? MET A 217 GLN A 222 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 69 ? O TYR A 69 N ALA A 14 ? N ALA A 14 A 2 3 N LEU A 13 ? N LEU A 13 O VAL A 104 ? O VAL A 104 A 3 4 N TYR A 103 ? N TYR A 103 O SER A 115 ? O SER A 115 A 4 5 N ILE A 114 ? N ILE A 114 O PHE A 125 ? O PHE A 125 B 1 2 O LYS A 78 ? O LYS A 78 N PHE A 42 ? N PHE A 42 B 2 3 N LEU A 43 ? N LEU A 43 O SER A 47 ? O SER A 47 B 3 4 N THR A 52 ? N THR A 52 O SER A 59 ? O SER A 59 B 4 5 N LYS A 60 ? N LYS A 60 O GLU A 264 ? O GLU A 264 B 5 6 O VAL A 263 ? O VAL A 263 N SER A 256 ? N SER A 256 B 6 7 O TYR A 253 ? O TYR A 253 N ARG A 243 ? N ARG A 243 B 7 8 O LEU A 242 ? O LEU A 242 N VAL A 146 ? N VAL A 146 B 8 9 N ASP A 147 ? N ASP A 147 O SER A 210 ? O SER A 210 C 1 2 N THR A 84 ? N THR A 84 O GLY A 88 ? O GLY A 88 D 1 2 N ILE A 135 ? N ILE A 135 O VAL B 16 ? O VAL B 1236 E 1 2 O LEU A 201 ? O LEU A 201 N PHE A 193 ? N PHE A 193 E 2 3 O LYS A 192 ? O LYS A 192 N LEU A 183 ? N LEU A 183 E 3 4 N VAL A 180 ? N VAL A 180 O VAL A 221 ? O VAL A 221 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 701 ? 5 'BINDING SITE FOR RESIDUE SO4 A 701' AC2 Software A SO4 702 ? 6 'BINDING SITE FOR RESIDUE SO4 A 702' AC3 Software B SO4 703 ? 4 'BINDING SITE FOR RESIDUE SO4 B 703' AC4 Software B SO4 704 ? 2 'BINDING SITE FOR RESIDUE SO4 B 704' AC5 Software A EDO 801 ? 4 'BINDING SITE FOR RESIDUE EDO A 801' AC6 Software A EDO 802 ? 1 'BINDING SITE FOR RESIDUE EDO A 802' AC7 Software A EDO 803 ? 5 'BINDING SITE FOR RESIDUE EDO A 803' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 PRO A 119 ? PRO A 119 . ? 8_456 ? 2 AC1 5 ASN A 141 ? ASN A 141 . ? 1_555 ? 3 AC1 5 HIS A 145 ? HIS A 145 . ? 1_555 ? 4 AC1 5 HIS A 212 ? HIS A 212 . ? 1_555 ? 5 AC1 5 ARG A 243 ? ARG A 243 . ? 1_555 ? 6 AC2 6 ARG A 54 ? ARG A 54 . ? 1_555 ? 7 AC2 6 SER A 55 ? SER A 55 . ? 1_555 ? 8 AC2 6 HIS A 56 ? HIS A 56 . ? 1_555 ? 9 AC2 6 GLN A 222 ? GLN A 222 . ? 1_555 ? 10 AC2 6 ASN A 225 ? ASN A 225 . ? 1_555 ? 11 AC2 6 HOH J . ? HOH A 416 . ? 1_555 ? 12 AC3 4 VAL A 130 ? VAL A 130 . ? 1_555 ? 13 AC3 4 HIS A 131 ? HIS A 131 . ? 1_555 ? 14 AC3 4 GLY A 132 ? GLY A 132 . ? 1_555 ? 15 AC3 4 HIS B 19 ? HIS B 1239 . ? 1_555 ? 16 AC4 2 ARG A 257 ? ARG A 257 . ? 6_654 ? 17 AC4 2 ARG B 4 ? ARG B 1224 . ? 1_555 ? 18 AC5 4 GLU A 138 ? GLU A 138 . ? 1_555 ? 19 AC5 4 TYR A 253 ? TYR A 253 . ? 1_555 ? 20 AC5 4 ALA A 255 ? ALA A 255 . ? 1_555 ? 21 AC5 4 HOH J . ? HOH A 414 . ? 1_555 ? 22 AC6 1 LYS A 21 ? LYS A 21 . ? 1_555 ? 23 AC7 5 ASN A 81 ? ASN A 81 . ? 1_555 ? 24 AC7 5 THR A 84 ? THR A 84 . ? 1_555 ? 25 AC7 5 SER A 127 ? SER A 127 . ? 1_555 ? 26 AC7 5 ALA A 128 ? ALA A 128 . ? 1_555 ? 27 AC7 5 HOH J . ? HOH A 442 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 PRO _pdbx_validate_close_contact.auth_seq_id_1 85 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 425 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 444 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 444 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_755 _pdbx_validate_symm_contact.dist 1.79 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A LEU 68 ? ? CB A LEU 68 ? ? CG A LEU 68 ? ? 131.23 115.30 15.93 2.30 N 2 1 CB A ASP 109 ? ? CG A ASP 109 ? ? OD2 A ASP 109 ? ? 124.67 118.30 6.37 0.90 N 3 1 CB A ASP 120 ? ? CG A ASP 120 ? ? OD2 A ASP 120 ? ? 125.06 118.30 6.76 0.90 N 4 1 N A PHE 121 ? ? CA A PHE 121 ? ? CB A PHE 121 ? ? 98.98 110.60 -11.62 1.80 N 5 1 CB A ASP 249 ? ? CG A ASP 249 ? ? OD2 A ASP 249 ? ? 124.93 118.30 6.63 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 35 ? ? -122.40 -116.85 2 1 ASN A 37 ? ? -99.59 39.79 3 1 ASN A 89 ? ? -54.34 99.38 4 1 PRO A 119 ? ? -26.57 -70.18 5 1 GLU A 140 ? ? -39.37 -71.64 6 1 ALA A 186 ? ? -56.25 -76.95 7 1 ASN A 206 ? ? -165.10 -167.14 8 1 HIS A 212 ? ? -97.76 -75.40 9 1 HIS A 248 ? ? -127.90 -124.84 10 1 ARG B 1224 ? ? 20.00 -94.09 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 70.1423 _pdbx_refine_tls.origin_y 25.0227 _pdbx_refine_tls.origin_z 24.8646 _pdbx_refine_tls.T[1][1] 0.0515 _pdbx_refine_tls.T[2][2] 0.0738 _pdbx_refine_tls.T[3][3] 0.0187 _pdbx_refine_tls.T[1][2] 0.0273 _pdbx_refine_tls.T[1][3] 0.0151 _pdbx_refine_tls.T[2][3] -0.0211 _pdbx_refine_tls.L[1][1] 3.2973 _pdbx_refine_tls.L[2][2] 4.7507 _pdbx_refine_tls.L[3][3] 1.4820 _pdbx_refine_tls.L[1][2] 2.6233 _pdbx_refine_tls.L[1][3] -0.2691 _pdbx_refine_tls.L[2][3] -0.5573 _pdbx_refine_tls.S[1][1] -0.1542 _pdbx_refine_tls.S[2][2] 0.2226 _pdbx_refine_tls.S[3][3] -0.0684 _pdbx_refine_tls.S[1][2] 0.1009 _pdbx_refine_tls.S[1][3] 0.0496 _pdbx_refine_tls.S[2][3] 0.2762 _pdbx_refine_tls.S[2][1] -0.0910 _pdbx_refine_tls.S[3][1] 0.0485 _pdbx_refine_tls.S[3][2] -0.0723 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 9 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 271 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.occupancy _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso 1 Se 1.048 0.127 0.241 0.152 52.386 2 Se 0.829 0.042 0.274 0.161 44.132 3 Se 1.041 0.454 0.119 0.114 60.000 4 Se 0.653 0.000 0.280 0.203 40.899 # _pdbx_phasing_dm.entry_id 1YYP _pdbx_phasing_dm.fom_acentric 0.740 _pdbx_phasing_dm.fom_centric 0.720 _pdbx_phasing_dm.fom 0.730 _pdbx_phasing_dm.reflns_acentric 12117 _pdbx_phasing_dm.reflns_centric 1616 _pdbx_phasing_dm.reflns 13733 # loop_ _pdbx_phasing_dm_shell.d_res_high _pdbx_phasing_dm_shell.d_res_low _pdbx_phasing_dm_shell.delta_phi_final _pdbx_phasing_dm_shell.delta_phi_initial _pdbx_phasing_dm_shell.fom_acentric _pdbx_phasing_dm_shell.fom_centric _pdbx_phasing_dm_shell.fom _pdbx_phasing_dm_shell.reflns_acentric _pdbx_phasing_dm_shell.reflns_centric _pdbx_phasing_dm_shell.reflns 7.100 29.302 ? ? 0.960 0.940 0.950 454 180 634 4.500 7.100 ? ? 0.930 0.870 0.920 1560 311 1871 3.600 4.500 ? ? 0.900 0.850 0.890 2029 285 2314 3.100 3.600 ? ? 0.810 0.750 0.810 2063 247 2310 2.700 3.100 ? ? 0.650 0.540 0.640 3707 378 4085 2.500 2.700 ? ? 0.490 0.410 0.480 2304 215 2519 # _phasing.method MAD # _phasing_MAD_clust.id 1 _phasing_MAD_clust.expt_id '4 wavelength' _phasing_MAD_clust.number_set ? # _phasing_MAD_expt.id '4 wavelength' _phasing_MAD_expt.mean_fom ? # loop_ _phasing_MAD_set.clust_id _phasing_MAD_set.expt_id _phasing_MAD_set.set_id _phasing_MAD_set.wavelength _phasing_MAD_set.pdbx_f_prime_refined _phasing_MAD_set.pdbx_f_double_prime_refined 1 '4 wavelength' 1 0.9793 -8.20 6.30 1 '4 wavelength' 2 0.9537 -2.65 3.61 1 '4 wavelength' 3 0.9794 -10.80 3.40 1 '4 wavelength' 4 1.0080 -3.02 0.53 # loop_ _phasing_set.id _phasing_set.pdbx_d_res_high _phasing_set.pdbx_d_res_low 1 . . 2 . . 3 . . 4 . . # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE AUTHOR STATES THAT THE SER 205 IS INDEED CORRECT AND IT MAY REPRESENT A DIFFERENT ISOLATE CYTOMEGALOVIRUS, REFERRING TO ERTL PF, POWELL KL. "PHYSICAL AND FUNCTIONAL INTERACTION OF HUMAN CYTOMEGALOVIRUS DNA POLYMERASE AND ITS ACCESSORY PROTEIN (ICP36) EXPRESSED IN INSECT CELLS." J VIROL. 1992 JUL;66(7):4126-33. ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ASP 2 ? A ASP 2 3 1 Y 1 A ARG 3 ? A ARG 3 4 1 Y 1 A LYS 4 ? A LYS 4 5 1 Y 1 A THR 5 ? A THR 5 6 1 Y 1 A ARG 6 ? A ARG 6 7 1 Y 1 A LEU 7 ? A LEU 7 8 1 Y 1 A SER 8 ? A SER 8 9 1 Y 1 A HIS 163 ? A HIS 163 10 1 Y 1 A THR 164 ? A THR 164 11 1 Y 1 A ARG 165 ? A ARG 165 12 1 Y 1 A VAL 166 ? A VAL 166 13 1 Y 1 A LYS 167 ? A LYS 167 14 1 Y 1 A ARG 168 ? A ARG 168 15 1 Y 1 A ASN 169 ? A ASN 169 16 1 Y 1 A VAL 170 ? A VAL 170 17 1 Y 1 A LYS 171 ? A LYS 171 18 1 Y 1 A LYS 172 ? A LYS 172 19 1 Y 1 A ALA 173 ? A ALA 173 20 1 Y 1 A PRO 174 ? A PRO 174 21 1 Y 1 A CYS 175 ? A CYS 175 22 1 Y 1 A PRO 176 ? A PRO 176 23 1 Y 1 A PHE 272 ? A PHE 272 24 1 Y 1 A GLN 273 ? A GLN 273 25 1 Y 1 A ARG 274 ? A ARG 274 26 1 Y 1 A GLY 275 ? A GLY 275 27 1 Y 1 A ASP 276 ? A ASP 276 28 1 Y 1 A PRO 277 ? A PRO 277 29 1 Y 1 A PHE 278 ? A PHE 278 30 1 Y 1 A ASP 279 ? A ASP 279 31 1 Y 1 A LYS 280 ? A LYS 280 32 1 Y 1 A ASN 281 ? A ASN 281 33 1 Y 1 A TYR 282 ? A TYR 282 34 1 Y 1 A VAL 283 ? A VAL 283 35 1 Y 1 A GLY 284 ? A GLY 284 36 1 Y 1 A ASN 285 ? A ASN 285 37 1 Y 1 A SER 286 ? A SER 286 38 1 Y 1 A GLY 287 ? A GLY 287 39 1 Y 1 A LYS 288 ? A LYS 288 40 1 Y 1 A SER 289 ? A SER 289 41 1 Y 1 A ARG 290 ? A ARG 290 42 1 Y 1 B LEU 1221 ? B LEU 1 43 1 Y 1 B PRO 1222 ? B PRO 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MET N N N N 240 MET CA C N S 241 MET C C N N 242 MET O O N N 243 MET CB C N N 244 MET CG C N N 245 MET SD S N N 246 MET CE C N N 247 MET OXT O N N 248 MET H H N N 249 MET H2 H N N 250 MET HA H N N 251 MET HB2 H N N 252 MET HB3 H N N 253 MET HG2 H N N 254 MET HG3 H N N 255 MET HE1 H N N 256 MET HE2 H N N 257 MET HE3 H N N 258 MET HXT H N N 259 PHE N N N N 260 PHE CA C N S 261 PHE C C N N 262 PHE O O N N 263 PHE CB C N N 264 PHE CG C Y N 265 PHE CD1 C Y N 266 PHE CD2 C Y N 267 PHE CE1 C Y N 268 PHE CE2 C Y N 269 PHE CZ C Y N 270 PHE OXT O N N 271 PHE H H N N 272 PHE H2 H N N 273 PHE HA H N N 274 PHE HB2 H N N 275 PHE HB3 H N N 276 PHE HD1 H N N 277 PHE HD2 H N N 278 PHE HE1 H N N 279 PHE HE2 H N N 280 PHE HZ H N N 281 PHE HXT H N N 282 PRO N N N N 283 PRO CA C N S 284 PRO C C N N 285 PRO O O N N 286 PRO CB C N N 287 PRO CG C N N 288 PRO CD C N N 289 PRO OXT O N N 290 PRO H H N N 291 PRO HA H N N 292 PRO HB2 H N N 293 PRO HB3 H N N 294 PRO HG2 H N N 295 PRO HG3 H N N 296 PRO HD2 H N N 297 PRO HD3 H N N 298 PRO HXT H N N 299 SER N N N N 300 SER CA C N S 301 SER C C N N 302 SER O O N N 303 SER CB C N N 304 SER OG O N N 305 SER OXT O N N 306 SER H H N N 307 SER H2 H N N 308 SER HA H N N 309 SER HB2 H N N 310 SER HB3 H N N 311 SER HG H N N 312 SER HXT H N N 313 SO4 S S N N 314 SO4 O1 O N N 315 SO4 O2 O N N 316 SO4 O3 O N N 317 SO4 O4 O N N 318 THR N N N N 319 THR CA C N S 320 THR C C N N 321 THR O O N N 322 THR CB C N R 323 THR OG1 O N N 324 THR CG2 C N N 325 THR OXT O N N 326 THR H H N N 327 THR H2 H N N 328 THR HA H N N 329 THR HB H N N 330 THR HG1 H N N 331 THR HG21 H N N 332 THR HG22 H N N 333 THR HG23 H N N 334 THR HXT H N N 335 TRP N N N N 336 TRP CA C N S 337 TRP C C N N 338 TRP O O N N 339 TRP CB C N N 340 TRP CG C Y N 341 TRP CD1 C Y N 342 TRP CD2 C Y N 343 TRP NE1 N Y N 344 TRP CE2 C Y N 345 TRP CE3 C Y N 346 TRP CZ2 C Y N 347 TRP CZ3 C Y N 348 TRP CH2 C Y N 349 TRP OXT O N N 350 TRP H H N N 351 TRP H2 H N N 352 TRP HA H N N 353 TRP HB2 H N N 354 TRP HB3 H N N 355 TRP HD1 H N N 356 TRP HE1 H N N 357 TRP HE3 H N N 358 TRP HZ2 H N N 359 TRP HZ3 H N N 360 TRP HH2 H N N 361 TRP HXT H N N 362 TYR N N N N 363 TYR CA C N S 364 TYR C C N N 365 TYR O O N N 366 TYR CB C N N 367 TYR CG C Y N 368 TYR CD1 C Y N 369 TYR CD2 C Y N 370 TYR CE1 C Y N 371 TYR CE2 C Y N 372 TYR CZ C Y N 373 TYR OH O N N 374 TYR OXT O N N 375 TYR H H N N 376 TYR H2 H N N 377 TYR HA H N N 378 TYR HB2 H N N 379 TYR HB3 H N N 380 TYR HD1 H N N 381 TYR HD2 H N N 382 TYR HE1 H N N 383 TYR HE2 H N N 384 TYR HH H N N 385 TYR HXT H N N 386 VAL N N N N 387 VAL CA C N S 388 VAL C C N N 389 VAL O O N N 390 VAL CB C N N 391 VAL CG1 C N N 392 VAL CG2 C N N 393 VAL OXT O N N 394 VAL H H N N 395 VAL H2 H N N 396 VAL HA H N N 397 VAL HB H N N 398 VAL HG11 H N N 399 VAL HG12 H N N 400 VAL HG13 H N N 401 VAL HG21 H N N 402 VAL HG22 H N N 403 VAL HG23 H N N 404 VAL HXT H N N 405 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MET N CA sing N N 227 MET N H sing N N 228 MET N H2 sing N N 229 MET CA C sing N N 230 MET CA CB sing N N 231 MET CA HA sing N N 232 MET C O doub N N 233 MET C OXT sing N N 234 MET CB CG sing N N 235 MET CB HB2 sing N N 236 MET CB HB3 sing N N 237 MET CG SD sing N N 238 MET CG HG2 sing N N 239 MET CG HG3 sing N N 240 MET SD CE sing N N 241 MET CE HE1 sing N N 242 MET CE HE2 sing N N 243 MET CE HE3 sing N N 244 MET OXT HXT sing N N 245 PHE N CA sing N N 246 PHE N H sing N N 247 PHE N H2 sing N N 248 PHE CA C sing N N 249 PHE CA CB sing N N 250 PHE CA HA sing N N 251 PHE C O doub N N 252 PHE C OXT sing N N 253 PHE CB CG sing N N 254 PHE CB HB2 sing N N 255 PHE CB HB3 sing N N 256 PHE CG CD1 doub Y N 257 PHE CG CD2 sing Y N 258 PHE CD1 CE1 sing Y N 259 PHE CD1 HD1 sing N N 260 PHE CD2 CE2 doub Y N 261 PHE CD2 HD2 sing N N 262 PHE CE1 CZ doub Y N 263 PHE CE1 HE1 sing N N 264 PHE CE2 CZ sing Y N 265 PHE CE2 HE2 sing N N 266 PHE CZ HZ sing N N 267 PHE OXT HXT sing N N 268 PRO N CA sing N N 269 PRO N CD sing N N 270 PRO N H sing N N 271 PRO CA C sing N N 272 PRO CA CB sing N N 273 PRO CA HA sing N N 274 PRO C O doub N N 275 PRO C OXT sing N N 276 PRO CB CG sing N N 277 PRO CB HB2 sing N N 278 PRO CB HB3 sing N N 279 PRO CG CD sing N N 280 PRO CG HG2 sing N N 281 PRO CG HG3 sing N N 282 PRO CD HD2 sing N N 283 PRO CD HD3 sing N N 284 PRO OXT HXT sing N N 285 SER N CA sing N N 286 SER N H sing N N 287 SER N H2 sing N N 288 SER CA C sing N N 289 SER CA CB sing N N 290 SER CA HA sing N N 291 SER C O doub N N 292 SER C OXT sing N N 293 SER CB OG sing N N 294 SER CB HB2 sing N N 295 SER CB HB3 sing N N 296 SER OG HG sing N N 297 SER OXT HXT sing N N 298 SO4 S O1 doub N N 299 SO4 S O2 doub N N 300 SO4 S O3 sing N N 301 SO4 S O4 sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TRP N CA sing N N 319 TRP N H sing N N 320 TRP N H2 sing N N 321 TRP CA C sing N N 322 TRP CA CB sing N N 323 TRP CA HA sing N N 324 TRP C O doub N N 325 TRP C OXT sing N N 326 TRP CB CG sing N N 327 TRP CB HB2 sing N N 328 TRP CB HB3 sing N N 329 TRP CG CD1 doub Y N 330 TRP CG CD2 sing Y N 331 TRP CD1 NE1 sing Y N 332 TRP CD1 HD1 sing N N 333 TRP CD2 CE2 doub Y N 334 TRP CD2 CE3 sing Y N 335 TRP NE1 CE2 sing Y N 336 TRP NE1 HE1 sing N N 337 TRP CE2 CZ2 sing Y N 338 TRP CE3 CZ3 doub Y N 339 TRP CE3 HE3 sing N N 340 TRP CZ2 CH2 doub Y N 341 TRP CZ2 HZ2 sing N N 342 TRP CZ3 CH2 sing Y N 343 TRP CZ3 HZ3 sing N N 344 TRP CH2 HH2 sing N N 345 TRP OXT HXT sing N N 346 TYR N CA sing N N 347 TYR N H sing N N 348 TYR N H2 sing N N 349 TYR CA C sing N N 350 TYR CA CB sing N N 351 TYR CA HA sing N N 352 TYR C O doub N N 353 TYR C OXT sing N N 354 TYR CB CG sing N N 355 TYR CB HB2 sing N N 356 TYR CB HB3 sing N N 357 TYR CG CD1 doub Y N 358 TYR CG CD2 sing Y N 359 TYR CD1 CE1 sing Y N 360 TYR CD1 HD1 sing N N 361 TYR CD2 CE2 doub Y N 362 TYR CD2 HD2 sing N N 363 TYR CE1 CZ doub Y N 364 TYR CE1 HE1 sing N N 365 TYR CE2 CZ sing Y N 366 TYR CE2 HE2 sing N N 367 TYR CZ OH sing N N 368 TYR OH HH sing N N 369 TYR OXT HXT sing N N 370 VAL N CA sing N N 371 VAL N H sing N N 372 VAL N H2 sing N N 373 VAL CA C sing N N 374 VAL CA CB sing N N 375 VAL CA HA sing N N 376 VAL C O doub N N 377 VAL C OXT sing N N 378 VAL CB CG1 sing N N 379 VAL CB CG2 sing N N 380 VAL CB HB sing N N 381 VAL CG1 HG11 sing N N 382 VAL CG1 HG12 sing N N 383 VAL CG1 HG13 sing N N 384 VAL CG2 HG21 sing N N 385 VAL CG2 HG22 sing N N 386 VAL CG2 HG23 sing N N 387 VAL OXT HXT sing N N 388 # _atom_sites.entry_id 1YYP _atom_sites.fract_transf_matrix[1][1] 0.01089 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.00784 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.01516 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_