data_1YYY # _entry.id 1YYY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YYY pdb_00001yyy 10.2210/pdb1yyy/pdb WWPDB D_1000177452 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1zzz _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YYY _pdbx_database_status.recvd_initial_deposition_date 1998-06-03 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Krishnan, R.' 1 'Zhang, E.' 2 'Hakansson, K.' 3 'Arni, R.K.' 4 'Tulinsky, A.' 5 'Lim-Wilby, M.S.L.' 6 'Levy, O.E.' 7 'Semple, J.E.' 8 'Brunck, T.K.' 9 # _citation.id primary _citation.title 'Highly selective mechanism-based thrombin inhibitors: structures of thrombin and trypsin inhibited with rigid peptidyl aldehydes.' _citation.journal_abbrev Biochemistry _citation.journal_volume 37 _citation.page_first 12094 _citation.page_last 12103 _citation.year 1998 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9724521 _citation.pdbx_database_id_DOI 10.1021/bi980840e # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Krishnan, R.' 1 ? primary 'Zhang, E.' 2 ? primary 'Hakansson, K.' 3 ? primary 'Arni, R.K.' 4 ? primary 'Tulinsky, A.' 5 ? primary 'Lim-Wilby, M.S.' 6 ? primary 'Levy, O.E.' 7 ? primary 'Semple, J.E.' 8 ? primary 'Brunck, T.K.' 9 ? # _cell.entry_id 1YYY _cell.length_a 63.760 _cell.length_b 63.140 _cell.length_c 69.290 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1YYY _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat TRYPSIN 23324.287 1 3.4.21.4 ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer syn '2-{(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin-1-yl}-N-{(2S)-1-[(3S)-1-carbamimidoylpiperidin-3-yl]-3-oxopropan-2-yl}acetamide' 506.618 1 ? ? ? ? 4 water nat water 18.015 157 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name TRP-CVS1695 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNT LNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNM FCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN ; _entity_poly.pdbx_seq_one_letter_code_can ;IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNT LNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNM FCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN ; _entity_poly.pdbx_strand_id 1 _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 VAL n 1 3 GLY n 1 4 GLY n 1 5 TYR n 1 6 THR n 1 7 CYS n 1 8 GLY n 1 9 ALA n 1 10 ASN n 1 11 THR n 1 12 VAL n 1 13 PRO n 1 14 TYR n 1 15 GLN n 1 16 VAL n 1 17 SER n 1 18 LEU n 1 19 ASN n 1 20 SER n 1 21 GLY n 1 22 TYR n 1 23 HIS n 1 24 PHE n 1 25 CYS n 1 26 GLY n 1 27 GLY n 1 28 SER n 1 29 LEU n 1 30 ILE n 1 31 ASN n 1 32 SER n 1 33 GLN n 1 34 TRP n 1 35 VAL n 1 36 VAL n 1 37 SER n 1 38 ALA n 1 39 ALA n 1 40 HIS n 1 41 CYS n 1 42 TYR n 1 43 LYS n 1 44 SER n 1 45 GLY n 1 46 ILE n 1 47 GLN n 1 48 VAL n 1 49 ARG n 1 50 LEU n 1 51 GLY n 1 52 GLU n 1 53 ASP n 1 54 ASN n 1 55 ILE n 1 56 ASN n 1 57 VAL n 1 58 VAL n 1 59 GLU n 1 60 GLY n 1 61 ASN n 1 62 GLU n 1 63 GLN n 1 64 PHE n 1 65 ILE n 1 66 SER n 1 67 ALA n 1 68 SER n 1 69 LYS n 1 70 SER n 1 71 ILE n 1 72 VAL n 1 73 HIS n 1 74 PRO n 1 75 SER n 1 76 TYR n 1 77 ASN n 1 78 SER n 1 79 ASN n 1 80 THR n 1 81 LEU n 1 82 ASN n 1 83 ASN n 1 84 ASP n 1 85 ILE n 1 86 MET n 1 87 LEU n 1 88 ILE n 1 89 LYS n 1 90 LEU n 1 91 LYS n 1 92 SER n 1 93 ALA n 1 94 ALA n 1 95 SER n 1 96 LEU n 1 97 ASN n 1 98 SER n 1 99 ARG n 1 100 VAL n 1 101 ALA n 1 102 SER n 1 103 ILE n 1 104 SER n 1 105 LEU n 1 106 PRO n 1 107 THR n 1 108 SER n 1 109 CYS n 1 110 ALA n 1 111 SER n 1 112 ALA n 1 113 GLY n 1 114 THR n 1 115 GLN n 1 116 CYS n 1 117 LEU n 1 118 ILE n 1 119 SER n 1 120 GLY n 1 121 TRP n 1 122 GLY n 1 123 ASN n 1 124 THR n 1 125 LYS n 1 126 SER n 1 127 SER n 1 128 GLY n 1 129 THR n 1 130 SER n 1 131 TYR n 1 132 PRO n 1 133 ASP n 1 134 VAL n 1 135 LEU n 1 136 LYS n 1 137 CYS n 1 138 LEU n 1 139 LYS n 1 140 ALA n 1 141 PRO n 1 142 ILE n 1 143 LEU n 1 144 SER n 1 145 ASP n 1 146 SER n 1 147 SER n 1 148 CYS n 1 149 LYS n 1 150 SER n 1 151 ALA n 1 152 TYR n 1 153 PRO n 1 154 GLY n 1 155 GLN n 1 156 ILE n 1 157 THR n 1 158 SER n 1 159 ASN n 1 160 MET n 1 161 PHE n 1 162 CYS n 1 163 ALA n 1 164 GLY n 1 165 TYR n 1 166 LEU n 1 167 GLU n 1 168 GLY n 1 169 GLY n 1 170 LYS n 1 171 ASP n 1 172 SER n 1 173 CYS n 1 174 GLN n 1 175 GLY n 1 176 ASP n 1 177 SER n 1 178 GLY n 1 179 GLY n 1 180 PRO n 1 181 VAL n 1 182 VAL n 1 183 CYS n 1 184 SER n 1 185 GLY n 1 186 LYS n 1 187 LEU n 1 188 GLN n 1 189 GLY n 1 190 ILE n 1 191 VAL n 1 192 SER n 1 193 TRP n 1 194 GLY n 1 195 SER n 1 196 GLY n 1 197 CYS n 1 198 ALA n 1 199 GLN n 1 200 LYS n 1 201 ASN n 1 202 LYS n 1 203 PRO n 1 204 GLY n 1 205 VAL n 1 206 TYR n 1 207 THR n 1 208 LYS n 1 209 VAL n 1 210 CYS n 1 211 ASN n 1 212 TYR n 1 213 VAL n 1 214 SER n 1 215 TRP n 1 216 ILE n 1 217 LYS n 1 218 GLN n 1 219 THR n 1 220 ILE n 1 221 ALA n 1 222 SER n 1 223 ASN n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name cattle _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus Bos _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TRY1_BOVIN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P00760 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;FIFLALLGAAVAFPVDDDDKIVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEG NEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKA PILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI ASN ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YYY _struct_ref_seq.pdbx_strand_id 1 _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 223 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00760 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 243 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 16 _struct_ref_seq.pdbx_auth_seq_align_end 245 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0KV peptide-like . '2-{(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin-1-yl}-N-{(2S)-1-[(3S)-1-carbamimidoylpiperidin-3-yl]-3-oxopropan-2-yl}acetamide' CVS1695 'C23 H34 N6 O5 S' 506.618 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1YYY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.99 _exptl_crystal.density_percent_sol 58.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 300 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date 1995-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1YYY _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.1 _reflns.number_obs 13609 _reflns.number_all ? _reflns.percent_possible_obs 76 _reflns.pdbx_Rmerge_I_obs 0.043 _reflns.pdbx_Rsym_value 0.12 _reflns.pdbx_netI_over_sigmaI 15.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.00 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.3 _reflns_shell.percent_possible_all 52 _reflns_shell.Rmerge_I_obs 0.061 _reflns_shell.pdbx_Rsym_value 0.25 _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 2. _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1YYY _refine.ls_number_reflns_obs 13035 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 7.0 _refine.ls_d_res_high 2.1 _refine.ls_percent_reflns_obs 72 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.157 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 17.10 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1PPC' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1YYY _refine_analyze.Luzzati_coordinate_error_obs 0.2 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 7.0 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1629 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 157 _refine_hist.number_atoms_total 1815 _refine_hist.d_res_high 2.1 _refine_hist.d_res_low 7.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.015 0.020 ? ? 'X-RAY DIFFRACTION' ? p_angle_d 0.035 0.030 ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d 0.055 0.050 ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it 1.1 1.0 ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it 1.8 1.5 ? ? 'X-RAY DIFFRACTION' ? p_scbond_it 2.6 2.0 ? ? 'X-RAY DIFFRACTION' ? p_scangle_it 3.8 2.5 ? ? 'X-RAY DIFFRACTION' ? p_plane_restr 0.027 0.030 ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr 0.15 0.20 ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd 0.22 0.60 ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd 0.31 0.60 ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd 0.28 0.60 ? ? 'X-RAY DIFFRACTION' ? p_planar_tor 4. 3 ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor 20. 15 ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor 30. 20 ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1YYY _struct.title 'Trypsin inhibitors with rigid tripeptidyl aldehydes' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YYY _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'SERINE PROTEASE, HYDROLASE-HYDROLASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 39 ? CYS A 41 ? ALA 1 56 CYS 1 58 5 ? 3 HELX_P HELX_P2 2 ASP A 145 ? ALA A 151 ? ASP 1 165 ALA 1 171 1 ? 7 HELX_P HELX_P3 3 VAL A 209 ? ALA A 221 ? VAL 1 231 ALA 1 243 5 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 137 SG ? ? 1 CYS 22 1 CYS 157 1_555 ? ? ? ? ? ? ? 2.092 ? ? disulf2 disulf ? ? A CYS 25 SG ? ? ? 1_555 A CYS 41 SG ? ? 1 CYS 42 1 CYS 58 1_555 ? ? ? ? ? ? ? 2.076 ? ? disulf3 disulf ? ? A CYS 109 SG ? ? ? 1_555 A CYS 210 SG ? ? 1 CYS 128 1 CYS 232 1_555 ? ? ? ? ? ? ? 2.013 ? ? disulf4 disulf ? ? A CYS 116 SG ? ? ? 1_555 A CYS 183 SG ? ? 1 CYS 136 1 CYS 201 1_555 ? ? ? ? ? ? ? 2.002 ? ? disulf5 disulf ? ? A CYS 148 SG ? ? ? 1_555 A CYS 162 SG ? ? 1 CYS 168 1 CYS 182 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf6 disulf ? ? A CYS 173 SG ? ? ? 1_555 A CYS 197 SG ? ? 1 CYS 191 1 CYS 220 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc1 metalc ? ? A GLU 52 OE1 ? ? ? 1_555 B CA . CA ? ? 1 GLU 70 1 CA 701 1_555 ? ? ? ? ? ? ? 2.188 ? ? metalc2 metalc ? ? A ASN 54 O ? ? ? 1_555 B CA . CA ? ? 1 ASN 72 1 CA 701 1_555 ? ? ? ? ? ? ? 2.438 ? ? metalc3 metalc ? ? A VAL 57 O ? ? ? 1_555 B CA . CA ? ? 1 VAL 75 1 CA 701 1_555 ? ? ? ? ? ? ? 2.293 ? ? metalc4 metalc ? ? A GLU 62 OE2 ? ? ? 1_555 B CA . CA ? ? 1 GLU 80 1 CA 701 1_555 ? ? ? ? ? ? ? 2.635 ? ? metalc5 metalc ? ? D HOH . O ? ? ? 1_555 B CA . CA ? ? 1 HOH 409 1 CA 701 1_555 ? ? ? ? ? ? ? 2.438 ? ? metalc6 metalc ? ? D HOH . O ? ? ? 1_555 B CA . CA ? ? 1 HOH 574 1 CA 701 1_555 ? ? ? ? ? ? ? 2.540 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 63 ? SER A 66 ? GLN 1 81 SER 1 84 A 2 GLN A 47 ? LEU A 50 ? GLN 1 64 LEU 1 67 A 3 GLN A 15 ? ASN A 19 ? GLN 1 30 ASN 1 34 A 4 HIS A 23 ? ASN A 31 ? HIS 1 40 ASN 1 48 A 5 TRP A 34 ? SER A 37 ? TRP 1 51 SER 1 54 A 6 MET A 86 ? LEU A 90 ? MET 1 104 LEU 1 108 A 7 ALA A 67 ? VAL A 72 ? ALA 1 85 VAL 1 90 B 1 LYS A 136 ? PRO A 141 ? LYS 1 156 PRO 1 161 B 2 GLN A 115 ? GLY A 120 ? GLN 1 135 GLY 1 140 B 3 PRO A 180 ? CYS A 183 ? PRO 1 198 CYS 1 201 B 4 LYS A 186 ? TRP A 193 ? LYS 1 204 TRP 1 215 B 5 GLY A 204 ? LYS A 208 ? GLY 1 226 LYS 1 230 B 6 MET A 160 ? ALA A 163 ? MET 1 180 ALA 1 183 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 63 ? O GLN 1 81 N LEU A 50 ? N LEU 1 67 A 2 3 O GLN A 47 ? O GLN 1 64 N ASN A 19 ? N ASN 1 34 A 3 4 O VAL A 16 ? O VAL 1 31 N GLY A 27 ? N GLY 1 44 A 4 5 O SER A 28 ? O SER 1 45 N VAL A 36 ? N VAL 1 53 A 5 6 O VAL A 35 ? O VAL 1 52 N ILE A 88 ? N ILE 1 106 A 6 7 O LEU A 87 ? O LEU 1 105 N ILE A 71 ? N ILE 1 89 B 1 2 O LYS A 136 ? O LYS 1 156 N GLY A 120 ? N GLY 1 140 B 2 3 O LEU A 117 ? O LEU 1 137 N VAL A 182 ? N VAL 1 200 B 3 4 O VAL A 181 ? O VAL 1 199 N GLY A 189 ? N GLY 1 211 B 4 5 O ILE A 190 ? O ILE 1 212 N THR A 207 ? N THR 1 229 B 5 6 O GLY A 204 ? O GLY 1 226 N ALA A 163 ? N ALA 1 183 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software 1 CA 701 ? 6 'BINDING SITE FOR RESIDUE CA 1 701' AC2 Software 1 0KV 1 ? 18 'BINDING SITE FOR RESIDUE 0KV 1 1' CAT Author ? ? ? ? 3 'ACTIVE SITE OF TRYPSIN' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLU A 52 ? GLU 1 70 . ? 1_555 ? 2 AC1 6 ASN A 54 ? ASN 1 72 . ? 1_555 ? 3 AC1 6 VAL A 57 ? VAL 1 75 . ? 1_555 ? 4 AC1 6 GLU A 62 ? GLU 1 80 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH 1 409 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH 1 574 . ? 1_555 ? 7 AC2 18 HIS A 40 ? HIS 1 57 . ? 1_555 ? 8 AC2 18 LEU A 81 ? LEU 1 99 . ? 1_555 ? 9 AC2 18 ASP A 171 ? ASP 1 189 . ? 1_555 ? 10 AC2 18 SER A 172 ? SER 1 190 . ? 1_555 ? 11 AC2 18 CYS A 173 ? CYS 1 191 . ? 1_555 ? 12 AC2 18 GLN A 174 ? GLN 1 192 . ? 1_555 ? 13 AC2 18 GLY A 175 ? GLY 1 193 . ? 1_555 ? 14 AC2 18 SER A 177 ? SER 1 195 . ? 1_555 ? 15 AC2 18 SER A 192 ? SER 1 214 . ? 1_555 ? 16 AC2 18 TRP A 193 ? TRP 1 215 . ? 1_555 ? 17 AC2 18 GLY A 194 ? GLY 1 216 . ? 1_555 ? 18 AC2 18 SER A 195 ? SER 1 217 . ? 1_555 ? 19 AC2 18 GLY A 196 ? GLY 1 219 . ? 1_555 ? 20 AC2 18 GLY A 204 ? GLY 1 226 . ? 1_555 ? 21 AC2 18 HOH D . ? HOH 1 412 . ? 1_555 ? 22 AC2 18 HOH D . ? HOH 1 434 . ? 1_555 ? 23 AC2 18 HOH D . ? HOH 1 464 . ? 1_555 ? 24 AC2 18 HOH D . ? HOH 1 554 . ? 1_555 ? 25 CAT 3 HIS A 40 ? HIS 1 57 . ? 1_555 ? 26 CAT 3 ASP A 84 ? ASP 1 102 . ? 1_555 ? 27 CAT 3 SER A 177 ? SER 1 195 . ? 1_555 ? # _database_PDB_matrix.entry_id 1YYY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1YYY _atom_sites.fract_transf_matrix[1][1] 0.015684 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015838 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014432 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 16 16 ILE ILE 1 . n A 1 2 VAL 2 17 17 VAL VAL 1 . n A 1 3 GLY 3 18 18 GLY GLY 1 . n A 1 4 GLY 4 19 19 GLY GLY 1 . n A 1 5 TYR 5 20 20 TYR TYR 1 . n A 1 6 THR 6 21 21 THR THR 1 . n A 1 7 CYS 7 22 22 CYS CYS 1 . n A 1 8 GLY 8 23 23 GLY GLY 1 . n A 1 9 ALA 9 24 24 ALA ALA 1 . n A 1 10 ASN 10 25 25 ASN ASN 1 . n A 1 11 THR 11 26 26 THR THR 1 . n A 1 12 VAL 12 27 27 VAL VAL 1 . n A 1 13 PRO 13 28 28 PRO PRO 1 . n A 1 14 TYR 14 29 29 TYR TYR 1 . n A 1 15 GLN 15 30 30 GLN GLN 1 . n A 1 16 VAL 16 31 31 VAL VAL 1 . n A 1 17 SER 17 32 32 SER SER 1 . n A 1 18 LEU 18 33 33 LEU LEU 1 . n A 1 19 ASN 19 34 34 ASN ASN 1 . n A 1 20 SER 20 37 37 SER SER 1 . n A 1 21 GLY 21 38 38 GLY GLY 1 . n A 1 22 TYR 22 39 39 TYR TYR 1 . n A 1 23 HIS 23 40 40 HIS HIS 1 . n A 1 24 PHE 24 41 41 PHE PHE 1 . n A 1 25 CYS 25 42 42 CYS CYS 1 . n A 1 26 GLY 26 43 43 GLY GLY 1 . n A 1 27 GLY 27 44 44 GLY GLY 1 . n A 1 28 SER 28 45 45 SER SER 1 . n A 1 29 LEU 29 46 46 LEU LEU 1 . n A 1 30 ILE 30 47 47 ILE ILE 1 . n A 1 31 ASN 31 48 48 ASN ASN 1 . n A 1 32 SER 32 49 49 SER SER 1 . n A 1 33 GLN 33 50 50 GLN GLN 1 . n A 1 34 TRP 34 51 51 TRP TRP 1 . n A 1 35 VAL 35 52 52 VAL VAL 1 . n A 1 36 VAL 36 53 53 VAL VAL 1 . n A 1 37 SER 37 54 54 SER SER 1 . n A 1 38 ALA 38 55 55 ALA ALA 1 . n A 1 39 ALA 39 56 56 ALA ALA 1 . n A 1 40 HIS 40 57 57 HIS HIS 1 . n A 1 41 CYS 41 58 58 CYS CYS 1 . n A 1 42 TYR 42 59 59 TYR TYR 1 . n A 1 43 LYS 43 60 60 LYS LYS 1 . n A 1 44 SER 44 61 61 SER SER 1 . n A 1 45 GLY 45 62 62 GLY GLY 1 . n A 1 46 ILE 46 63 63 ILE ILE 1 . n A 1 47 GLN 47 64 64 GLN GLN 1 . n A 1 48 VAL 48 65 65 VAL VAL 1 . n A 1 49 ARG 49 66 66 ARG ARG 1 . n A 1 50 LEU 50 67 67 LEU LEU 1 . n A 1 51 GLY 51 69 69 GLY GLY 1 . n A 1 52 GLU 52 70 70 GLU GLU 1 . n A 1 53 ASP 53 71 71 ASP ASP 1 . n A 1 54 ASN 54 72 72 ASN ASN 1 . n A 1 55 ILE 55 73 73 ILE ILE 1 . n A 1 56 ASN 56 74 74 ASN ASN 1 . n A 1 57 VAL 57 75 75 VAL VAL 1 . n A 1 58 VAL 58 76 76 VAL VAL 1 . n A 1 59 GLU 59 77 77 GLU GLU 1 . n A 1 60 GLY 60 78 78 GLY GLY 1 . n A 1 61 ASN 61 79 79 ASN ASN 1 . n A 1 62 GLU 62 80 80 GLU GLU 1 . n A 1 63 GLN 63 81 81 GLN GLN 1 . n A 1 64 PHE 64 82 82 PHE PHE 1 . n A 1 65 ILE 65 83 83 ILE ILE 1 . n A 1 66 SER 66 84 84 SER SER 1 . n A 1 67 ALA 67 85 85 ALA ALA 1 . n A 1 68 SER 68 86 86 SER SER 1 . n A 1 69 LYS 69 87 87 LYS LYS 1 . n A 1 70 SER 70 88 88 SER SER 1 . n A 1 71 ILE 71 89 89 ILE ILE 1 . n A 1 72 VAL 72 90 90 VAL VAL 1 . n A 1 73 HIS 73 91 91 HIS HIS 1 . n A 1 74 PRO 74 92 92 PRO PRO 1 . n A 1 75 SER 75 93 93 SER SER 1 . n A 1 76 TYR 76 94 94 TYR TYR 1 . n A 1 77 ASN 77 95 95 ASN ASN 1 . n A 1 78 SER 78 96 96 SER SER 1 . n A 1 79 ASN 79 97 97 ASN ASN 1 . n A 1 80 THR 80 98 98 THR THR 1 . n A 1 81 LEU 81 99 99 LEU LEU 1 . n A 1 82 ASN 82 100 100 ASN ASN 1 . n A 1 83 ASN 83 101 101 ASN ASN 1 . n A 1 84 ASP 84 102 102 ASP ASP 1 . n A 1 85 ILE 85 103 103 ILE ILE 1 . n A 1 86 MET 86 104 104 MET MET 1 . n A 1 87 LEU 87 105 105 LEU LEU 1 . n A 1 88 ILE 88 106 106 ILE ILE 1 . n A 1 89 LYS 89 107 107 LYS LYS 1 . n A 1 90 LEU 90 108 108 LEU LEU 1 . n A 1 91 LYS 91 109 109 LYS LYS 1 . n A 1 92 SER 92 110 110 SER SER 1 . n A 1 93 ALA 93 111 111 ALA ALA 1 . n A 1 94 ALA 94 112 112 ALA ALA 1 . n A 1 95 SER 95 113 113 SER SER 1 . n A 1 96 LEU 96 114 114 LEU LEU 1 . n A 1 97 ASN 97 115 115 ASN ASN 1 . n A 1 98 SER 98 116 116 SER SER 1 . n A 1 99 ARG 99 117 117 ARG ARG 1 . n A 1 100 VAL 100 118 118 VAL VAL 1 . n A 1 101 ALA 101 119 119 ALA ALA 1 . n A 1 102 SER 102 120 120 SER SER 1 . n A 1 103 ILE 103 121 121 ILE ILE 1 . n A 1 104 SER 104 122 122 SER SER 1 . n A 1 105 LEU 105 123 123 LEU LEU 1 . n A 1 106 PRO 106 124 124 PRO PRO 1 . n A 1 107 THR 107 125 125 THR THR 1 . n A 1 108 SER 108 127 127 SER SER 1 . n A 1 109 CYS 109 128 128 CYS CYS 1 . n A 1 110 ALA 110 129 129 ALA ALA 1 . n A 1 111 SER 111 130 130 SER SER 1 . n A 1 112 ALA 112 132 132 ALA ALA 1 . n A 1 113 GLY 113 133 133 GLY GLY 1 . n A 1 114 THR 114 134 134 THR THR 1 . n A 1 115 GLN 115 135 135 GLN GLN 1 . n A 1 116 CYS 116 136 136 CYS CYS 1 . n A 1 117 LEU 117 137 137 LEU LEU 1 . n A 1 118 ILE 118 138 138 ILE ILE 1 . n A 1 119 SER 119 139 139 SER SER 1 . n A 1 120 GLY 120 140 140 GLY GLY 1 . n A 1 121 TRP 121 141 141 TRP TRP 1 . n A 1 122 GLY 122 142 142 GLY GLY 1 . n A 1 123 ASN 123 143 143 ASN ASN 1 . n A 1 124 THR 124 144 144 THR THR 1 . n A 1 125 LYS 125 145 145 LYS LYS 1 . n A 1 126 SER 126 146 146 SER SER 1 . n A 1 127 SER 127 147 147 SER SER 1 . n A 1 128 GLY 128 148 148 GLY GLY 1 . n A 1 129 THR 129 149 149 THR THR 1 . n A 1 130 SER 130 150 150 SER SER 1 . n A 1 131 TYR 131 151 151 TYR TYR 1 . n A 1 132 PRO 132 152 152 PRO PRO 1 . n A 1 133 ASP 133 153 153 ASP ASP 1 . n A 1 134 VAL 134 154 154 VAL VAL 1 . n A 1 135 LEU 135 155 155 LEU LEU 1 . n A 1 136 LYS 136 156 156 LYS LYS 1 . n A 1 137 CYS 137 157 157 CYS CYS 1 . n A 1 138 LEU 138 158 158 LEU LEU 1 . n A 1 139 LYS 139 159 159 LYS LYS 1 . n A 1 140 ALA 140 160 160 ALA ALA 1 . n A 1 141 PRO 141 161 161 PRO PRO 1 . n A 1 142 ILE 142 162 162 ILE ILE 1 . n A 1 143 LEU 143 163 163 LEU LEU 1 . n A 1 144 SER 144 164 164 SER SER 1 . n A 1 145 ASP 145 165 165 ASP ASP 1 . n A 1 146 SER 146 166 166 SER SER 1 . n A 1 147 SER 147 167 167 SER SER 1 . n A 1 148 CYS 148 168 168 CYS CYS 1 . n A 1 149 LYS 149 169 169 LYS LYS 1 . n A 1 150 SER 150 170 170 SER SER 1 . n A 1 151 ALA 151 171 171 ALA ALA 1 . n A 1 152 TYR 152 172 172 TYR TYR 1 . n A 1 153 PRO 153 173 173 PRO PRO 1 . n A 1 154 GLY 154 174 174 GLY GLY 1 . n A 1 155 GLN 155 175 175 GLN GLN 1 . n A 1 156 ILE 156 176 176 ILE ILE 1 . n A 1 157 THR 157 177 177 THR THR 1 . n A 1 158 SER 158 178 178 SER SER 1 . n A 1 159 ASN 159 179 179 ASN ASN 1 . n A 1 160 MET 160 180 180 MET MET 1 . n A 1 161 PHE 161 181 181 PHE PHE 1 . n A 1 162 CYS 162 182 182 CYS CYS 1 . n A 1 163 ALA 163 183 183 ALA ALA 1 . n A 1 164 GLY 164 184 184 GLY GLY 1 A n A 1 165 TYR 165 184 184 TYR TYR 1 . n A 1 166 LEU 166 185 185 LEU LEU 1 . n A 1 167 GLU 167 186 186 GLU GLU 1 . n A 1 168 GLY 168 187 187 GLY GLY 1 . n A 1 169 GLY 169 188 188 GLY GLY 1 A n A 1 170 LYS 170 188 188 LYS LYS 1 . n A 1 171 ASP 171 189 189 ASP ASP 1 . n A 1 172 SER 172 190 190 SER SER 1 . n A 1 173 CYS 173 191 191 CYS CYS 1 . n A 1 174 GLN 174 192 192 GLN GLN 1 . n A 1 175 GLY 175 193 193 GLY GLY 1 . n A 1 176 ASP 176 194 194 ASP ASP 1 . n A 1 177 SER 177 195 195 SER SER 1 . n A 1 178 GLY 178 196 196 GLY GLY 1 . n A 1 179 GLY 179 197 197 GLY GLY 1 . n A 1 180 PRO 180 198 198 PRO PRO 1 . n A 1 181 VAL 181 199 199 VAL VAL 1 . n A 1 182 VAL 182 200 200 VAL VAL 1 . n A 1 183 CYS 183 201 201 CYS CYS 1 . n A 1 184 SER 184 202 202 SER SER 1 . n A 1 185 GLY 185 203 203 GLY GLY 1 . n A 1 186 LYS 186 204 204 LYS LYS 1 . n A 1 187 LEU 187 209 209 LEU LEU 1 . n A 1 188 GLN 188 210 210 GLN GLN 1 . n A 1 189 GLY 189 211 211 GLY GLY 1 . n A 1 190 ILE 190 212 212 ILE ILE 1 . n A 1 191 VAL 191 213 213 VAL VAL 1 . n A 1 192 SER 192 214 214 SER SER 1 . n A 1 193 TRP 193 215 215 TRP TRP 1 . n A 1 194 GLY 194 216 216 GLY GLY 1 . n A 1 195 SER 195 217 217 SER SER 1 . n A 1 196 GLY 196 219 219 GLY GLY 1 . n A 1 197 CYS 197 220 220 CYS CYS 1 . n A 1 198 ALA 198 221 221 ALA ALA 1 A n A 1 199 GLN 199 221 221 GLN GLN 1 . n A 1 200 LYS 200 222 222 LYS LYS 1 . n A 1 201 ASN 201 223 223 ASN ASN 1 . n A 1 202 LYS 202 224 224 LYS LYS 1 . n A 1 203 PRO 203 225 225 PRO PRO 1 . n A 1 204 GLY 204 226 226 GLY GLY 1 . n A 1 205 VAL 205 227 227 VAL VAL 1 . n A 1 206 TYR 206 228 228 TYR TYR 1 . n A 1 207 THR 207 229 229 THR THR 1 . n A 1 208 LYS 208 230 230 LYS LYS 1 . n A 1 209 VAL 209 231 231 VAL VAL 1 . n A 1 210 CYS 210 232 232 CYS CYS 1 . n A 1 211 ASN 211 233 233 ASN ASN 1 . n A 1 212 TYR 212 234 234 TYR TYR 1 . n A 1 213 VAL 213 235 235 VAL VAL 1 . n A 1 214 SER 214 236 236 SER SER 1 . n A 1 215 TRP 215 237 237 TRP TRP 1 . n A 1 216 ILE 216 238 238 ILE ILE 1 . n A 1 217 LYS 217 239 239 LYS LYS 1 . n A 1 218 GLN 218 240 240 GLN GLN 1 . n A 1 219 THR 219 241 241 THR THR 1 . n A 1 220 ILE 220 242 242 ILE ILE 1 . n A 1 221 ALA 221 243 243 ALA ALA 1 . n A 1 222 SER 222 244 244 SER SER 1 . n A 1 223 ASN 223 245 245 ASN ASN 1 . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 701 701 CA CA 1 . C 3 0KV 1 1 1 0KV 0IV 1 . D 4 HOH 1 401 401 HOH HOH 1 . D 4 HOH 2 402 402 HOH HOH 1 . D 4 HOH 3 403 403 HOH HOH 1 . D 4 HOH 4 404 404 HOH HOH 1 . D 4 HOH 5 405 405 HOH HOH 1 . D 4 HOH 6 406 406 HOH HOH 1 . D 4 HOH 7 407 407 HOH HOH 1 . D 4 HOH 8 408 408 HOH HOH 1 . D 4 HOH 9 409 409 HOH HOH 1 . D 4 HOH 10 410 410 HOH HOH 1 . D 4 HOH 11 411 411 HOH HOH 1 . D 4 HOH 12 412 412 HOH HOH 1 . D 4 HOH 13 413 413 HOH HOH 1 . D 4 HOH 14 414 414 HOH HOH 1 . D 4 HOH 15 415 415 HOH HOH 1 . D 4 HOH 16 416 416 HOH HOH 1 . D 4 HOH 17 417 417 HOH HOH 1 . D 4 HOH 18 418 418 HOH HOH 1 . D 4 HOH 19 419 419 HOH HOH 1 . D 4 HOH 20 420 420 HOH HOH 1 . D 4 HOH 21 421 421 HOH HOH 1 . D 4 HOH 22 422 422 HOH HOH 1 . D 4 HOH 23 423 423 HOH HOH 1 . D 4 HOH 24 424 424 HOH HOH 1 . D 4 HOH 25 425 425 HOH HOH 1 . D 4 HOH 26 426 426 HOH HOH 1 . D 4 HOH 27 427 427 HOH HOH 1 . D 4 HOH 28 428 428 HOH HOH 1 . D 4 HOH 29 429 429 HOH HOH 1 . D 4 HOH 30 430 430 HOH HOH 1 . D 4 HOH 31 431 431 HOH HOH 1 . D 4 HOH 32 432 432 HOH HOH 1 . D 4 HOH 33 433 433 HOH HOH 1 . D 4 HOH 34 434 434 HOH HOH 1 . D 4 HOH 35 435 435 HOH HOH 1 . D 4 HOH 36 436 436 HOH HOH 1 . D 4 HOH 37 437 437 HOH HOH 1 . D 4 HOH 38 438 438 HOH HOH 1 . D 4 HOH 39 439 439 HOH HOH 1 . D 4 HOH 40 440 440 HOH HOH 1 . D 4 HOH 41 441 441 HOH HOH 1 . D 4 HOH 42 442 442 HOH HOH 1 . D 4 HOH 43 443 443 HOH HOH 1 . D 4 HOH 44 444 444 HOH HOH 1 . D 4 HOH 45 445 445 HOH HOH 1 . D 4 HOH 46 446 446 HOH HOH 1 . D 4 HOH 47 447 447 HOH HOH 1 . D 4 HOH 48 448 448 HOH HOH 1 . D 4 HOH 49 449 449 HOH HOH 1 . D 4 HOH 50 451 451 HOH HOH 1 . D 4 HOH 51 452 452 HOH HOH 1 . D 4 HOH 52 453 453 HOH HOH 1 . D 4 HOH 53 454 454 HOH HOH 1 . D 4 HOH 54 455 455 HOH HOH 1 . D 4 HOH 55 456 456 HOH HOH 1 . D 4 HOH 56 457 457 HOH HOH 1 . D 4 HOH 57 458 458 HOH HOH 1 . D 4 HOH 58 460 460 HOH HOH 1 . D 4 HOH 59 461 461 HOH HOH 1 . D 4 HOH 60 462 462 HOH HOH 1 . D 4 HOH 61 463 463 HOH HOH 1 . D 4 HOH 62 464 464 HOH HOH 1 . D 4 HOH 63 466 466 HOH HOH 1 . D 4 HOH 64 467 467 HOH HOH 1 . D 4 HOH 65 468 468 HOH HOH 1 . D 4 HOH 66 469 469 HOH HOH 1 . D 4 HOH 67 470 470 HOH HOH 1 . D 4 HOH 68 471 471 HOH HOH 1 . D 4 HOH 69 473 473 HOH HOH 1 . D 4 HOH 70 474 474 HOH HOH 1 . D 4 HOH 71 475 475 HOH HOH 1 . D 4 HOH 72 476 476 HOH HOH 1 . D 4 HOH 73 478 478 HOH HOH 1 . D 4 HOH 74 481 481 HOH HOH 1 . D 4 HOH 75 483 483 HOH HOH 1 . D 4 HOH 76 486 486 HOH HOH 1 . D 4 HOH 77 487 487 HOH HOH 1 . D 4 HOH 78 490 490 HOH HOH 1 . D 4 HOH 79 491 491 HOH HOH 1 . D 4 HOH 80 493 493 HOH HOH 1 . D 4 HOH 81 494 494 HOH HOH 1 . D 4 HOH 82 496 496 HOH HOH 1 . D 4 HOH 83 497 497 HOH HOH 1 . D 4 HOH 84 498 498 HOH HOH 1 . D 4 HOH 85 499 499 HOH HOH 1 . D 4 HOH 86 500 500 HOH HOH 1 . D 4 HOH 87 501 501 HOH HOH 1 . D 4 HOH 88 502 502 HOH HOH 1 . D 4 HOH 89 503 503 HOH HOH 1 . D 4 HOH 90 504 504 HOH HOH 1 . D 4 HOH 91 505 505 HOH HOH 1 . D 4 HOH 92 506 506 HOH HOH 1 . D 4 HOH 93 507 507 HOH HOH 1 . D 4 HOH 94 508 508 HOH HOH 1 . D 4 HOH 95 509 509 HOH HOH 1 . D 4 HOH 96 510 510 HOH HOH 1 . D 4 HOH 97 511 511 HOH HOH 1 . D 4 HOH 98 512 512 HOH HOH 1 . D 4 HOH 99 514 514 HOH HOH 1 . D 4 HOH 100 515 515 HOH HOH 1 . D 4 HOH 101 516 516 HOH HOH 1 . D 4 HOH 102 517 517 HOH HOH 1 . D 4 HOH 103 521 521 HOH HOH 1 . D 4 HOH 104 522 522 HOH HOH 1 . D 4 HOH 105 525 525 HOH HOH 1 . D 4 HOH 106 526 526 HOH HOH 1 . D 4 HOH 107 527 527 HOH HOH 1 . D 4 HOH 108 528 528 HOH HOH 1 . D 4 HOH 109 530 530 HOH HOH 1 . D 4 HOH 110 532 532 HOH HOH 1 . D 4 HOH 111 534 534 HOH HOH 1 . D 4 HOH 112 535 535 HOH HOH 1 . D 4 HOH 113 536 536 HOH HOH 1 . D 4 HOH 114 539 539 HOH HOH 1 . D 4 HOH 115 540 540 HOH HOH 1 . D 4 HOH 116 541 541 HOH HOH 1 . D 4 HOH 117 542 542 HOH HOH 1 . D 4 HOH 118 547 547 HOH HOH 1 . D 4 HOH 119 550 550 HOH HOH 1 . D 4 HOH 120 553 553 HOH HOH 1 . D 4 HOH 121 554 554 HOH HOH 1 . D 4 HOH 122 555 555 HOH HOH 1 . D 4 HOH 123 556 556 HOH HOH 1 . D 4 HOH 124 558 558 HOH HOH 1 . D 4 HOH 125 559 559 HOH HOH 1 . D 4 HOH 126 561 561 HOH HOH 1 . D 4 HOH 127 562 562 HOH HOH 1 . D 4 HOH 128 567 567 HOH HOH 1 . D 4 HOH 129 569 569 HOH HOH 1 . D 4 HOH 130 570 570 HOH HOH 1 . D 4 HOH 131 573 573 HOH HOH 1 . D 4 HOH 132 574 574 HOH HOH 1 . D 4 HOH 133 576 576 HOH HOH 1 . D 4 HOH 134 577 577 HOH HOH 1 . D 4 HOH 135 583 583 HOH HOH 1 . D 4 HOH 136 584 584 HOH HOH 1 . D 4 HOH 137 585 585 HOH HOH 1 . D 4 HOH 138 587 587 HOH HOH 1 . D 4 HOH 139 588 588 HOH HOH 1 . D 4 HOH 140 589 589 HOH HOH 1 . D 4 HOH 141 591 591 HOH HOH 1 . D 4 HOH 142 592 592 HOH HOH 1 . D 4 HOH 143 594 594 HOH HOH 1 . D 4 HOH 144 595 595 HOH HOH 1 . D 4 HOH 145 596 596 HOH HOH 1 . D 4 HOH 146 598 598 HOH HOH 1 . D 4 HOH 147 602 602 HOH HOH 1 . D 4 HOH 148 603 603 HOH HOH 1 . D 4 HOH 149 610 610 HOH HOH 1 . D 4 HOH 150 612 612 HOH HOH 1 . D 4 HOH 151 614 614 HOH HOH 1 . D 4 HOH 152 617 617 HOH HOH 1 . D 4 HOH 153 623 623 HOH HOH 1 . D 4 HOH 154 626 626 HOH HOH 1 . D 4 HOH 155 627 627 HOH HOH 1 . D 4 HOH 156 634 634 HOH HOH 1 . D 4 HOH 157 644 644 HOH HOH 1 . # _pdbx_molecule_features.prd_id PRD_000769 _pdbx_molecule_features.name '2-{(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin-1-yl}-N-{(2S)-1-[(3S)-1-carbamimidoylpiperidin-3-yl]-3-oxopropan-2-yl}acetamide' _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000769 _pdbx_molecule.asym_id C # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 52 ? 1 GLU 70 ? 1_555 CA ? B CA . ? 1 CA 701 ? 1_555 O ? A ASN 54 ? 1 ASN 72 ? 1_555 85.6 ? 2 OE1 ? A GLU 52 ? 1 GLU 70 ? 1_555 CA ? B CA . ? 1 CA 701 ? 1_555 O ? A VAL 57 ? 1 VAL 75 ? 1_555 162.0 ? 3 O ? A ASN 54 ? 1 ASN 72 ? 1_555 CA ? B CA . ? 1 CA 701 ? 1_555 O ? A VAL 57 ? 1 VAL 75 ? 1_555 87.2 ? 4 OE1 ? A GLU 52 ? 1 GLU 70 ? 1_555 CA ? B CA . ? 1 CA 701 ? 1_555 OE2 ? A GLU 62 ? 1 GLU 80 ? 1_555 102.5 ? 5 O ? A ASN 54 ? 1 ASN 72 ? 1_555 CA ? B CA . ? 1 CA 701 ? 1_555 OE2 ? A GLU 62 ? 1 GLU 80 ? 1_555 156.4 ? 6 O ? A VAL 57 ? 1 VAL 75 ? 1_555 CA ? B CA . ? 1 CA 701 ? 1_555 OE2 ? A GLU 62 ? 1 GLU 80 ? 1_555 90.6 ? 7 OE1 ? A GLU 52 ? 1 GLU 70 ? 1_555 CA ? B CA . ? 1 CA 701 ? 1_555 O ? D HOH . ? 1 HOH 409 ? 1_555 78.7 ? 8 O ? A ASN 54 ? 1 ASN 72 ? 1_555 CA ? B CA . ? 1 CA 701 ? 1_555 O ? D HOH . ? 1 HOH 409 ? 1_555 107.6 ? 9 O ? A VAL 57 ? 1 VAL 75 ? 1_555 CA ? B CA . ? 1 CA 701 ? 1_555 O ? D HOH . ? 1 HOH 409 ? 1_555 87.8 ? 10 OE2 ? A GLU 62 ? 1 GLU 80 ? 1_555 CA ? B CA . ? 1 CA 701 ? 1_555 O ? D HOH . ? 1 HOH 409 ? 1_555 95.8 ? 11 OE1 ? A GLU 52 ? 1 GLU 70 ? 1_555 CA ? B CA . ? 1 CA 701 ? 1_555 O ? D HOH . ? 1 HOH 574 ? 1_555 87.9 ? 12 O ? A ASN 54 ? 1 ASN 72 ? 1_555 CA ? B CA . ? 1 CA 701 ? 1_555 O ? D HOH . ? 1 HOH 574 ? 1_555 84.3 ? 13 O ? A VAL 57 ? 1 VAL 75 ? 1_555 CA ? B CA . ? 1 CA 701 ? 1_555 O ? D HOH . ? 1 HOH 574 ? 1_555 107.8 ? 14 OE2 ? A GLU 62 ? 1 GLU 80 ? 1_555 CA ? B CA . ? 1 CA 701 ? 1_555 O ? D HOH . ? 1 HOH 574 ? 1_555 74.0 ? 15 O ? D HOH . ? 1 HOH 409 ? 1_555 CA ? B CA . ? 1 CA 701 ? 1_555 O ? D HOH . ? 1 HOH 574 ? 1_555 161.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-06-08 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-12-12 5 'Structure model' 1 4 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 3 'Structure model' 'Version format compliance' 8 4 'Structure model' Other 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Derived calculations' 11 5 'Structure model' Other 12 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' database_2 2 5 'Structure model' pdbx_database_status 3 5 'Structure model' pdbx_initial_refinement_model 4 5 'Structure model' pdbx_struct_conn_angle 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_database_status.process_site' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.value' 17 5 'Structure model' '_struct_conn.pdbx_dist_value' 18 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 30 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal R-AXIS 'data collection' II ? 1 R-AXIS 'data reduction' II ? 2 X-PLOR 'model building' . ? 3 PROFFT refinement . ? 4 X-PLOR refinement . ? 5 R-AXIS 'data scaling' II ? 6 X-PLOR phasing . ? 7 # _pdbx_entry_details.entry_id 1YYY _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;THE ACTIVE SITE INHIBITOR IS IN ITS S CHIRAL FORM. THE ACTIVE SITE SER 195 IS CLOSE TO THE CARBONYL CARBON (C3) OF THE ALDEHYDE GROUP OF THE INHIBITOR FORMING A TRANSITION-STATE COMPLEX. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG 1 SER 195 ? ? C3 1 0KV 1 ? ? 1.70 2 1 OG 1 SER 195 ? ? O3 1 0KV 1 ? ? 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CG1 1 VAL 53 ? ? CB 1 VAL 53 ? ? CG2 1 VAL 53 ? ? 101.11 110.90 -9.79 1.60 N 2 1 CB 1 TYR 59 ? ? CG 1 TYR 59 ? ? CD1 1 TYR 59 ? ? 116.95 121.00 -4.05 0.60 N 3 1 NE 1 ARG 66 ? ? CZ 1 ARG 66 ? ? NH1 1 ARG 66 ? ? 128.65 120.30 8.35 0.50 N 4 1 NE 1 ARG 66 ? ? CZ 1 ARG 66 ? ? NH2 1 ARG 66 ? ? 115.14 120.30 -5.16 0.50 N 5 1 CB 1 TYR 94 ? ? CG 1 TYR 94 ? ? CD2 1 TYR 94 ? ? 114.47 121.00 -6.53 0.60 N 6 1 CG 1 MET 104 ? ? SD 1 MET 104 ? ? CE 1 MET 104 ? ? 110.56 100.20 10.36 1.60 N 7 1 CB 1 ARG 117 ? ? CA 1 ARG 117 ? ? C 1 ARG 117 ? ? 93.92 110.40 -16.48 2.00 N 8 1 NE 1 ARG 117 ? ? CZ 1 ARG 117 ? ? NH1 1 ARG 117 ? ? 123.57 120.30 3.27 0.50 N 9 1 NE 1 ARG 117 ? ? CZ 1 ARG 117 ? ? NH2 1 ARG 117 ? ? 112.92 120.30 -7.38 0.50 N 10 1 CB 1 SER 130 ? ? CA 1 SER 130 ? ? C 1 SER 130 ? ? 123.62 110.10 13.52 1.90 N 11 1 CB 1 LYS 145 ? ? CA 1 LYS 145 ? ? C 1 LYS 145 ? ? 97.95 110.40 -12.45 2.00 N 12 1 CB 1 TYR 151 ? ? CG 1 TYR 151 ? ? CD1 1 TYR 151 ? ? 116.47 121.00 -4.53 0.60 N 13 1 CB 1 ASP 153 ? ? CG 1 ASP 153 ? ? OD1 1 ASP 153 ? ? 124.10 118.30 5.80 0.90 N 14 1 CB 1 ASP 153 ? ? CG 1 ASP 153 ? ? OD2 1 ASP 153 ? ? 109.71 118.30 -8.59 0.90 N 15 1 CB 1 ASP 165 ? ? CG 1 ASP 165 ? ? OD1 1 ASP 165 ? ? 130.52 118.30 12.22 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP 1 71 ? ? -117.05 -76.47 2 1 ASN 1 79 ? ? 93.75 -7.00 3 1 GLN 1 192 ? ? -39.47 124.43 4 1 SER 1 195 ? ? -47.53 150.33 5 1 SER 1 214 ? ? -128.53 -75.48 6 1 ASN 1 223 ? ? 49.70 22.56 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 GLY 1 44 ? ? 10.94 2 1 ASN 1 48 ? ? -10.03 3 1 GLU 1 77 ? ? 15.20 4 1 ALA 1 111 ? ? 10.05 5 1 ARG 1 117 ? ? 18.93 6 1 SER 1 120 ? ? 10.70 7 1 ALA 1 129 ? ? -10.57 8 1 GLN 1 135 ? ? -10.89 9 1 LEU 1 155 ? ? -11.98 10 1 GLU 1 186 ? ? -11.13 11 1 GLY 1 193 ? ? 10.56 12 1 SER 1 195 ? ? -10.27 13 1 LYS 1 204 ? ? -20.15 14 1 VAL 1 213 ? ? -14.30 15 1 GLY 1 216 ? ? -11.44 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 TYR 1 29 ? ? 0.062 'SIDE CHAIN' 2 1 ARG 1 117 ? ? 0.109 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 1 0KV 1 ? C7 ? C 0KV 1 C7 2 1 N 1 1 0KV 1 ? C8 ? C 0KV 1 C8 3 1 N 1 1 0KV 1 ? C9 ? C 0KV 1 C9 4 1 N 1 1 0KV 1 ? C10 ? C 0KV 1 C10 5 1 N 1 1 0KV 1 ? C11 ? C 0KV 1 C11 6 1 N 1 1 0KV 1 ? C12 ? C 0KV 1 C12 7 1 N 1 1 0KV 1 ? C13 ? C 0KV 1 C13 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 '2-{(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin-1-yl}-N-{(2S)-1-[(3S)-1-carbamimidoylpiperidin-3-yl]-3-oxopropan-2-yl}acetamide' 0KV 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PPC _pdbx_initial_refinement_model.details 'PDB ENTRY 1PPC' #