data_1YZA # _entry.id 1YZA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1YZA pdb_00001yza 10.2210/pdb1yza/pdb RCSB RCSB032099 ? ? WWPDB D_1000032099 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1YZC _pdbx_database_related.details 'Rd-apocyt b562 intermediates with the N- and a part of the C-terminal helices unfolded' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1YZA _pdbx_database_status.recvd_initial_deposition_date 2005-02-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Feng, H.' 1 'Takei, T.' 2 'Lipsitz, R.' 3 'Tjandra, N.' 4 'Bai, Y.' 5 'Berkeley Structural Genomics Center (BSGC)' 6 # _citation.id primary _citation.title 'Specific non-native hydrophobic interactions in a hidden folding intermediate: implication for protein folding' _citation.journal_abbrev Biochemistry _citation.journal_volume 42 _citation.page_first 12461 _citation.page_last 12465 _citation.year 2003 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14580191 _citation.pdbx_database_id_DOI 10.1021/bi035561s # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Feng, H.' 1 ? primary 'Takei, T.' 2 ? primary 'Lipsitz, R.' 3 ? primary 'Tjandra, N.' 4 ? primary 'Bai, Y.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Redesigned apo-cytochrome b562' _entity.formula_weight 11447.605 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation 'W7D, L10G, L14G, V16G, I17G' _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ADLEDNDETGNDNGKGGEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLAN EGKVKEAQAAAEQLKTTIRAYNQKYG ; _entity_poly.pdbx_seq_one_letter_code_can ;ADLEDNDETGNDNGKGGEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLAN EGKVKEAQAAAEQLKTTIRAYNQKYG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ASP n 1 3 LEU n 1 4 GLU n 1 5 ASP n 1 6 ASN n 1 7 ASP n 1 8 GLU n 1 9 THR n 1 10 GLY n 1 11 ASN n 1 12 ASP n 1 13 ASN n 1 14 GLY n 1 15 LYS n 1 16 GLY n 1 17 GLY n 1 18 GLU n 1 19 LYS n 1 20 ALA n 1 21 ASP n 1 22 ASN n 1 23 ALA n 1 24 ALA n 1 25 GLN n 1 26 VAL n 1 27 LYS n 1 28 ASP n 1 29 ALA n 1 30 LEU n 1 31 THR n 1 32 LYS n 1 33 MET n 1 34 ARG n 1 35 ALA n 1 36 ALA n 1 37 ALA n 1 38 LEU n 1 39 ASP n 1 40 ALA n 1 41 GLN n 1 42 LYS n 1 43 ALA n 1 44 THR n 1 45 PRO n 1 46 PRO n 1 47 LYS n 1 48 LEU n 1 49 GLU n 1 50 ASP n 1 51 LYS n 1 52 SER n 1 53 PRO n 1 54 ASP n 1 55 SER n 1 56 PRO n 1 57 GLU n 1 58 MET n 1 59 LYS n 1 60 ASP n 1 61 PHE n 1 62 ARG n 1 63 HIS n 1 64 GLY n 1 65 PHE n 1 66 ASP n 1 67 ILE n 1 68 LEU n 1 69 VAL n 1 70 GLY n 1 71 GLN n 1 72 ILE n 1 73 ASP n 1 74 ASP n 1 75 ALA n 1 76 LEU n 1 77 LYS n 1 78 LEU n 1 79 ALA n 1 80 ASN n 1 81 GLU n 1 82 GLY n 1 83 LYS n 1 84 VAL n 1 85 LYS n 1 86 GLU n 1 87 ALA n 1 88 GLN n 1 89 ALA n 1 90 ALA n 1 91 ALA n 1 92 GLU n 1 93 GLN n 1 94 LEU n 1 95 LYS n 1 96 THR n 1 97 THR n 1 98 ILE n 1 99 ARG n 1 100 ALA n 1 101 TYR n 1 102 ASN n 1 103 GLN n 1 104 LYS n 1 105 TYR n 1 106 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) pLysS cells' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET17b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1YZA _struct_ref.pdbx_db_accession 1YZA _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1YZA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 106 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1YZA _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 106 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 106 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D HSQC' 1 2 1 3D_15N-separated_NOESY 1 3 1 3D_13C-separated_NOESY 1 4 1 HNHA 1 5 1 '3D HNCACB, 3D CBCACONH,' 1 6 1 'D HAHBCONH, 3D HNCO, 2D NOESY, 2D residual dipolar expts' 2 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 4.84 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 ? 'sodium acetate, 92.5% H2O, 7.5% D2O' 2 ? '99% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DRX Bruker 500 ? 2 DRX Bruker 750 ? # _pdbx_nmr_refine.entry_id 1YZA _pdbx_nmr_refine.method 'distance geometry simulated annealing molecular dynamics matrix relaxation torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1YZA _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1YZA _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal 'structure solution' X-PLOR NIH-2.9 'Schwieters, C.' 1 processing NMRPipe 5.0.4 'Delaglio, F.' 2 refinement X-PLOR NIH-2.9 ? 3 # _exptl.entry_id 1YZA _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1YZA _struct.title 'The solution structure of a redesigned apocytochrome B562 (Rd-apocyt b562) with the N-terminal helix unfolded' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1YZA _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text ;Rd-apocyt b562, protein folding, Hidden folding Intermediate, non-native, hydrophobic-interactions, Structural Genomics, PSI, Protein Structure Initiative, Berkeley Structural Genomics Center, BSGC, ELECTRON TRANSPORT ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 22 ? ALA A 43 ? ASN A 22 ALA A 43 1 ? 22 HELX_P HELX_P2 2 PRO A 46 ? LYS A 51 ? PRO A 46 LYS A 51 5 ? 6 HELX_P HELX_P3 3 PRO A 56 ? GLU A 81 ? PRO A 56 GLU A 81 1 ? 26 HELX_P HELX_P4 4 LYS A 83 ? GLY A 106 ? LYS A 83 GLY A 106 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 1YZA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1YZA _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 MET 33 33 33 MET MET A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 MET 58 58 58 MET MET A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 HIS 63 63 63 HIS HIS A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 GLN 93 93 93 GLN GLN A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 TYR 101 101 101 TYR TYR A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 GLN 103 103 103 GLN GLN A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 GLY 106 106 106 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Berkeley Structural Genomics Center' _pdbx_SG_project.initial_of_center BSGC # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-08-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A ILE 98 ? ? H A ASN 102 ? ? 1.37 2 1 O A SER 52 ? ? H A ASP 54 ? ? 1.40 3 1 O A VAL 84 ? ? H A GLN 88 ? ? 1.47 4 1 O A ASN 11 ? ? H A ASN 13 ? ? 1.56 5 2 O A SER 55 ? ? H A GLU 57 ? ? 1.37 6 2 O A VAL 84 ? ? H A GLN 88 ? ? 1.43 7 2 O A SER 52 ? ? H A ASP 54 ? ? 1.47 8 2 O A ILE 98 ? ? H A ASN 102 ? ? 1.48 9 2 O A LYS 15 ? ? H A GLY 17 ? ? 1.53 10 2 O A ASP 21 ? ? HE21 A GLN 25 ? ? 1.54 11 2 O A ALA 91 ? ? H A LEU 94 ? ? 1.59 12 3 HD21 A ASN 11 ? ? H A ASN 13 ? ? 1.24 13 3 O A SER 52 ? ? H A ASP 54 ? ? 1.35 14 3 O A VAL 84 ? ? H A GLN 88 ? ? 1.41 15 3 O A SER 55 ? ? H A GLU 57 ? ? 1.42 16 3 O A ILE 98 ? ? H A ASN 102 ? ? 1.52 17 3 O A MET 58 ? ? H A ARG 62 ? ? 1.54 18 4 O A SER 52 ? ? H A ASP 54 ? ? 1.42 19 4 O A VAL 84 ? ? H A GLN 88 ? ? 1.44 20 4 O A ILE 98 ? ? H A ASN 102 ? ? 1.44 21 4 OD1 A ASP 54 ? ? H A SER 55 ? ? 1.52 22 5 O A SER 52 ? ? H A ASP 54 ? ? 1.36 23 5 O A ILE 98 ? ? H A ASN 102 ? ? 1.43 24 5 O A VAL 84 ? ? H A GLN 88 ? ? 1.55 25 6 O A SER 52 ? ? H A ASP 54 ? ? 1.17 26 6 HE21 A GLN 41 ? ? H A LYS 42 ? ? 1.17 27 6 HZ3 A LYS 47 ? ? HD22 A ASN 102 ? ? 1.30 28 6 O A VAL 84 ? ? H A GLN 88 ? ? 1.41 29 6 O A ILE 98 ? ? H A ASN 102 ? ? 1.44 30 6 O A LEU 68 ? ? H A ILE 72 ? ? 1.55 31 6 OD2 A ASP 21 ? ? H A ASN 22 ? ? 1.59 32 6 O A SER 52 ? ? N A ASP 54 ? ? 2.10 33 7 O A SER 52 ? ? H A ASP 54 ? ? 1.38 34 7 O A ILE 98 ? ? H A ASN 102 ? ? 1.52 35 7 O A VAL 84 ? ? H A GLN 88 ? ? 1.54 36 7 O A ASP 73 ? ? H A LYS 77 ? ? 1.54 37 7 O A PRO 56 ? ? H A ASP 60 ? ? 1.57 38 7 O A LEU 76 ? ? H A ASN 80 ? ? 1.59 39 7 O A GLU 57 ? ? H A PHE 61 ? ? 1.60 40 8 HE21 A GLN 41 ? ? H A LYS 42 ? ? 1.31 41 8 H3 A ALA 1 ? ? H A ASP 2 ? ? 1.33 42 8 O A SER 55 ? ? H A GLU 57 ? ? 1.42 43 8 O A ILE 98 ? ? H A ASN 102 ? ? 1.44 44 8 O A SER 52 ? ? H A ASP 54 ? ? 1.45 45 8 O A VAL 84 ? ? H A GLN 88 ? ? 1.51 46 8 O A LYS 15 ? ? H A GLY 17 ? ? 1.59 47 9 HE21 A GLN 41 ? ? H A LYS 42 ? ? 1.21 48 9 O A ILE 98 ? ? H A ASN 102 ? ? 1.42 49 9 O A VAL 84 ? ? H A GLN 88 ? ? 1.44 50 9 O A SER 52 ? ? H A ASP 54 ? ? 1.47 51 9 O A PRO 56 ? ? H A ASP 60 ? ? 1.56 52 9 O A LEU 76 ? ? H A ASN 80 ? ? 1.56 53 10 O A SER 52 ? ? H A ASP 54 ? ? 1.35 54 10 O A ILE 98 ? ? H A ASN 102 ? ? 1.43 55 10 O A VAL 84 ? ? H A GLN 88 ? ? 1.47 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 3 ? ? -152.85 15.86 2 1 GLU A 4 ? ? -141.95 56.74 3 1 ASP A 5 ? ? -152.91 75.78 4 1 ASN A 6 ? ? -157.34 69.20 5 1 GLU A 8 ? ? -71.04 -88.46 6 1 THR A 9 ? ? -159.17 -26.91 7 1 ASP A 12 ? ? 64.31 -61.76 8 1 LYS A 15 ? ? -158.26 -133.89 9 1 GLU A 18 ? ? -75.92 21.05 10 1 LYS A 19 ? ? 29.95 -155.44 11 1 ASP A 21 ? ? -144.33 -48.53 12 1 ASN A 22 ? ? -111.29 -107.52 13 1 LYS A 42 ? ? -158.86 66.07 14 1 ALA A 43 ? ? -153.32 -58.12 15 1 PRO A 45 ? ? -35.64 99.31 16 1 PRO A 46 ? ? -86.53 -101.65 17 1 LEU A 48 ? ? -81.59 30.35 18 1 ASP A 50 ? ? -159.27 40.64 19 1 SER A 52 ? ? -45.39 179.98 20 1 PRO A 53 ? ? -57.73 39.28 21 1 ASP A 54 ? ? -102.68 -63.37 22 1 PRO A 56 ? ? -56.08 9.45 23 1 PHE A 61 ? ? -74.42 -70.16 24 1 LYS A 83 ? ? -17.80 142.76 25 1 GLN A 93 ? ? -47.78 -19.94 26 2 LEU A 3 ? ? -148.86 -14.85 27 2 ASN A 6 ? ? -158.71 -77.57 28 2 ASP A 7 ? ? -71.99 -77.60 29 2 GLU A 8 ? ? -170.44 -58.13 30 2 THR A 9 ? ? -149.54 -24.54 31 2 LYS A 15 ? ? -152.17 37.06 32 2 GLU A 18 ? ? -168.26 -17.06 33 2 LYS A 19 ? ? 58.50 152.50 34 2 ALA A 20 ? ? -76.05 -161.11 35 2 ASP A 21 ? ? -160.66 -81.65 36 2 ASN A 22 ? ? -109.66 -89.57 37 2 ARG A 34 ? ? -39.00 -74.13 38 2 LYS A 42 ? ? -156.70 63.44 39 2 ALA A 43 ? ? -159.25 -55.33 40 2 THR A 44 ? ? -109.23 78.46 41 2 PRO A 45 ? ? -34.06 98.18 42 2 PRO A 46 ? ? -86.46 -101.64 43 2 LEU A 48 ? ? -77.82 21.86 44 2 ASP A 50 ? ? -159.02 43.45 45 2 SER A 52 ? ? -45.82 179.78 46 2 PRO A 53 ? ? -59.23 36.00 47 2 ASP A 54 ? ? -104.47 -60.11 48 2 PRO A 56 ? ? -59.09 40.60 49 2 GLU A 57 ? ? -76.20 -74.30 50 3 LEU A 3 ? ? -162.45 16.99 51 3 GLU A 4 ? ? -143.17 -34.22 52 3 ASP A 7 ? ? -66.96 80.08 53 3 GLU A 8 ? ? 50.58 -114.81 54 3 THR A 9 ? ? -158.25 -33.71 55 3 ASN A 11 ? ? -159.04 -114.03 56 3 ASP A 12 ? ? 60.34 -0.65 57 3 LYS A 15 ? ? -155.80 -143.35 58 3 GLU A 18 ? ? -162.68 75.60 59 3 LYS A 19 ? ? -150.55 -109.77 60 3 ALA A 20 ? ? -142.38 -105.37 61 3 ASP A 21 ? ? -148.33 -87.55 62 3 ASN A 22 ? ? -115.66 -113.65 63 3 LYS A 42 ? ? -153.09 58.48 64 3 ALA A 43 ? ? -160.62 -54.36 65 3 PRO A 45 ? ? -37.11 100.62 66 3 PRO A 46 ? ? -79.28 -103.64 67 3 LEU A 48 ? ? -76.45 40.20 68 3 ASP A 50 ? ? -159.03 51.91 69 3 SER A 52 ? ? -40.23 177.93 70 3 PRO A 53 ? ? -54.94 46.82 71 3 ASP A 54 ? ? -107.77 -65.00 72 3 PRO A 56 ? ? -62.46 38.85 73 3 LYS A 59 ? ? -53.05 -75.08 74 3 LEU A 94 ? ? -80.71 -70.03 75 3 LYS A 95 ? ? -39.74 -28.87 76 4 GLU A 4 ? ? -158.60 -104.38 77 4 ASN A 6 ? ? -158.67 -81.78 78 4 GLU A 8 ? ? -173.09 135.89 79 4 THR A 9 ? ? -159.25 -38.99 80 4 ASN A 13 ? ? -158.18 20.02 81 4 LYS A 15 ? ? -146.17 40.02 82 4 GLU A 18 ? ? -59.94 97.44 83 4 LYS A 19 ? ? 29.60 -154.17 84 4 ALA A 20 ? ? -155.40 -82.06 85 4 ASP A 21 ? ? -160.55 -61.90 86 4 ASN A 22 ? ? -110.32 -79.05 87 4 LYS A 42 ? ? -158.85 61.68 88 4 ALA A 43 ? ? -159.36 -56.62 89 4 THR A 44 ? ? -112.40 78.57 90 4 PRO A 45 ? ? -37.06 99.72 91 4 PRO A 46 ? ? -88.24 -103.47 92 4 LEU A 48 ? ? -77.23 31.08 93 4 ASP A 50 ? ? -158.90 52.56 94 4 LYS A 51 ? ? -141.27 41.96 95 4 SER A 52 ? ? -43.48 178.97 96 4 PRO A 53 ? ? -58.78 45.09 97 4 PRO A 56 ? ? -57.21 19.57 98 5 ASP A 2 ? ? -78.81 26.08 99 5 LEU A 3 ? ? 61.55 -72.12 100 5 ASN A 6 ? ? -158.72 -72.69 101 5 GLU A 8 ? ? -68.82 88.05 102 5 THR A 9 ? ? -159.19 -72.13 103 5 LYS A 15 ? ? -78.53 -119.63 104 5 GLU A 18 ? ? 50.61 170.16 105 5 ASP A 21 ? ? -158.88 -70.33 106 5 ASN A 22 ? ? -104.16 -114.25 107 5 LYS A 42 ? ? -152.65 49.15 108 5 ALA A 43 ? ? -158.00 -56.29 109 5 THR A 44 ? ? -108.76 76.70 110 5 PRO A 45 ? ? -32.94 97.96 111 5 PRO A 46 ? ? -79.48 -101.13 112 5 ASP A 50 ? ? -156.97 54.75 113 5 LYS A 51 ? ? -157.45 35.18 114 5 SER A 52 ? ? -36.33 168.53 115 5 PRO A 53 ? ? -40.93 49.75 116 5 ASP A 54 ? ? -105.17 -70.71 117 5 PRO A 56 ? ? -54.36 8.28 118 5 LYS A 83 ? ? -31.09 164.58 119 6 ASP A 2 ? ? -158.45 -56.98 120 6 LEU A 3 ? ? -172.74 -1.39 121 6 ASN A 6 ? ? -158.61 88.32 122 6 ASP A 7 ? ? 52.46 95.63 123 6 ASN A 13 ? ? -158.76 53.47 124 6 LYS A 19 ? ? -157.86 -132.84 125 6 ALA A 20 ? ? -76.68 -164.72 126 6 ASP A 21 ? ? -159.40 -80.10 127 6 ASN A 22 ? ? -98.89 -110.06 128 6 ARG A 34 ? ? -44.23 -72.95 129 6 LYS A 42 ? ? -145.06 51.33 130 6 ALA A 43 ? ? -140.73 -66.38 131 6 PRO A 45 ? ? -33.82 98.50 132 6 PRO A 46 ? ? -83.69 -105.04 133 6 LEU A 48 ? ? -77.33 38.51 134 6 ASP A 50 ? ? -158.43 56.60 135 6 SER A 52 ? ? -32.83 159.07 136 6 PRO A 53 ? ? -41.77 41.78 137 6 ASP A 54 ? ? -104.88 -65.77 138 6 PRO A 56 ? ? -59.50 21.20 139 7 LEU A 3 ? ? -169.09 -12.84 140 7 GLU A 4 ? ? -79.12 32.75 141 7 ASN A 6 ? ? -153.82 32.40 142 7 GLU A 8 ? ? -49.62 166.64 143 7 THR A 9 ? ? -146.47 -39.85 144 7 ASN A 13 ? ? -148.89 58.57 145 7 LYS A 15 ? ? -158.99 66.34 146 7 GLU A 18 ? ? -47.55 169.20 147 7 ALA A 20 ? ? -157.92 -115.92 148 7 ASP A 21 ? ? -159.91 -33.68 149 7 ASN A 22 ? ? -100.20 -93.70 150 7 ALA A 24 ? ? -59.75 -77.92 151 7 ARG A 34 ? ? -38.92 -73.69 152 7 LYS A 42 ? ? -149.98 -0.01 153 7 THR A 44 ? ? -158.99 87.95 154 7 PRO A 45 ? ? -40.15 102.14 155 7 PRO A 46 ? ? -82.96 -100.20 156 7 LEU A 48 ? ? -77.59 35.24 157 7 ASP A 50 ? ? -158.57 43.73 158 7 SER A 52 ? ? -46.11 -179.91 159 7 PRO A 53 ? ? -57.16 39.68 160 7 ASP A 54 ? ? -103.45 -66.51 161 7 PRO A 56 ? ? -56.46 10.98 162 8 LEU A 3 ? ? -153.98 44.16 163 8 GLU A 4 ? ? -157.22 -22.49 164 8 ASN A 6 ? ? -159.06 -82.63 165 8 ASP A 7 ? ? -64.54 95.39 166 8 GLU A 8 ? ? -70.15 -87.82 167 8 THR A 9 ? ? -158.85 -56.59 168 8 ASN A 13 ? ? -144.71 -54.89 169 8 LYS A 15 ? ? -81.19 -119.41 170 8 GLU A 18 ? ? 55.72 167.26 171 8 LYS A 19 ? ? -170.55 -169.28 172 8 ASP A 21 ? ? -160.05 -36.80 173 8 ASN A 22 ? ? -111.40 -113.86 174 8 LYS A 42 ? ? -149.03 34.45 175 8 ALA A 43 ? ? -133.74 -53.61 176 8 THR A 44 ? ? -109.20 79.27 177 8 PRO A 45 ? ? -34.90 98.84 178 8 PRO A 46 ? ? -87.47 -101.53 179 8 LEU A 48 ? ? -77.15 21.55 180 8 ASP A 50 ? ? -159.91 47.01 181 8 LYS A 51 ? ? -142.07 46.44 182 8 SER A 52 ? ? -48.91 -179.41 183 8 PRO A 53 ? ? -60.77 38.59 184 8 ASP A 54 ? ? -105.02 -66.63 185 8 PRO A 56 ? ? -64.05 40.67 186 8 PHE A 61 ? ? -65.64 -70.67 187 8 LYS A 83 ? ? -17.38 140.81 188 9 LEU A 3 ? ? -153.41 3.43 189 9 GLU A 4 ? ? -146.84 -2.34 190 9 ASP A 7 ? ? 41.82 26.81 191 9 GLU A 8 ? ? 56.30 -151.52 192 9 THR A 9 ? ? -158.57 -49.29 193 9 LYS A 15 ? ? -99.81 42.34 194 9 LYS A 19 ? ? 77.62 117.10 195 9 ASP A 21 ? ? -119.53 -78.03 196 9 ASN A 22 ? ? -100.51 -97.87 197 9 ARG A 34 ? ? -34.60 -72.36 198 9 LYS A 42 ? ? -152.43 4.30 199 9 THR A 44 ? ? -160.38 83.67 200 9 PRO A 45 ? ? -36.91 98.97 201 9 PRO A 46 ? ? -88.65 -101.41 202 9 LEU A 48 ? ? -78.21 35.09 203 9 ASP A 50 ? ? -158.63 52.68 204 9 SER A 52 ? ? -46.64 178.78 205 9 PRO A 53 ? ? -59.64 35.65 206 9 PRO A 56 ? ? -43.57 -9.62 207 9 GLU A 57 ? ? -22.38 -55.68 208 10 GLU A 4 ? ? -160.91 61.92 209 10 ASP A 7 ? ? 41.10 72.89 210 10 THR A 9 ? ? -154.02 -83.64 211 10 ASP A 12 ? ? -71.96 -124.57 212 10 ASN A 13 ? ? -158.32 -54.33 213 10 LYS A 15 ? ? -158.97 61.73 214 10 GLU A 18 ? ? 59.76 144.02 215 10 ALA A 20 ? ? -159.45 36.24 216 10 ASP A 21 ? ? -155.48 -25.69 217 10 ASN A 22 ? ? -102.45 -106.47 218 10 LYS A 42 ? ? -146.80 49.08 219 10 ALA A 43 ? ? -151.56 -55.50 220 10 PRO A 45 ? ? -35.66 99.76 221 10 PRO A 46 ? ? -84.10 -102.74 222 10 ASP A 50 ? ? -159.41 52.34 223 10 LYS A 51 ? ? -157.29 54.34 224 10 SER A 52 ? ? -45.58 -176.98 225 10 PRO A 53 ? ? -55.41 41.48 226 10 ASP A 54 ? ? -102.01 -67.03 227 10 PRO A 56 ? ? -57.33 17.91 228 10 LYS A 83 ? ? -21.91 153.94 #