HEADER TRANSFERASE 28-FEB-05 1YZH TITLE CRYSTAL STRUCTURE OF THE CONSERVED HYPOTHETICAL PROTEIN, TITLE 2 METHYLTRANSFERASE FROM STREPTOCOCCUS PNEUMONIAE TIGR4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRNA(M7G46)-METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.33; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 GENE: TRMB, SP0550; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID WITH T7 PROMOTER; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS METHYLTRANSFERASE, ALPHA-BETA-ALPHA SANDWICH, S-ADENOSYLMETHIONINE- KEYWDS 2 DEPENDENT, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 1YZH 1 VERSN REVDAT 2 24-FEB-09 1YZH 1 VERSN REVDAT 1 12-APR-05 1YZH 0 JRNL AUTH Y.KIM,H.LI,F.COLLART,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF THE CONSERVED METHYLTRANSFERASE FROM JRNL TITL 2 STREPTOCOCCUS PNEUMONIAE TIGR4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0000 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 30181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1621 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1706 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3340 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 344 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.01000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 1.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.151 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3466 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4690 ; 1.280 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 416 ; 5.574 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;38.393 ;24.749 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 605 ;15.593 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.420 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 489 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2685 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1649 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 364 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.218 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.238 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2121 ; 0.894 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3321 ; 1.429 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1554 ; 2.077 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1369 ; 3.137 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CNS 1.1 WAS ALSO USED IN REFINEMENT. REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 4 REMARK 4 1YZH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-05. REMARK 100 THE RCSB ID CODE IS RCSB032106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCCOLLECT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31802 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 36.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.19400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CITRATE, PEG3000, PH 5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 82.80650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.62650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 82.80650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.62650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE AUTHORS STATE THE REMARK 300 BIOLOGICAL ASSEMBLY IS NOT CONFIRMED BY EXPERIMENT BUT REMARK 300 IS MOST LIKELY A MONOMER AS SEEN IN OTHER SIMILAR REMARK 300 METHYLTRANSFERASES (BY SEQUENCE AND STRUCTURES). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 VAL A 3 REMARK 465 ARG A 4 REMARK 465 ASN A 5 REMARK 465 ARG A 6 REMARK 465 LYS A 7 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 465 VAL B 3 REMARK 465 ARG B 4 REMARK 465 ASN B 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 202 O HOH B 629 2.11 REMARK 500 OD1 ASP A 110 O HOH A 358 2.12 REMARK 500 O HOH B 561 O HOH B 601 2.17 REMARK 500 O HOH A 354 O HOH B 642 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 394 O HOH B 544 4555 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 27 -58.48 -131.42 REMARK 500 ASN A 89 35.45 -89.79 REMARK 500 TRP A 120 57.64 37.62 REMARK 500 ASP A 179 80.95 -154.39 REMARK 500 ALA B 27 -62.10 -103.12 REMARK 500 ASN B 89 44.12 -85.78 REMARK 500 ASP B 179 83.61 -161.40 REMARK 500 SER B 198 -18.02 -48.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 20 22.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 294 DISTANCE = 5.69 ANGSTROMS REMARK 525 HOH B 528 DISTANCE = 5.63 ANGSTROMS REMARK 525 HOH B 565 DISTANCE = 5.74 ANGSTROMS REMARK 525 HOH B 596 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH B 605 DISTANCE = 5.31 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC80283 RELATED DB: TARGETDB DBREF 1YZH A 1 211 UNP P67506 TRMB_STRPN 1 211 DBREF 1YZH B 1 211 UNP P67506 TRMB_STRPN 1 211 SEQADV 1YZH SER A -2 UNP P67506 CLONING ARTIFACT SEQADV 1YZH ASN A -1 UNP P67506 CLONING ARTIFACT SEQADV 1YZH ALA A 0 UNP P67506 CLONING ARTIFACT SEQADV 1YZH MSE A 1 UNP P67506 MET 1 MODIFIED RESIDUE SEQADV 1YZH MSE A 56 UNP P67506 MET 56 MODIFIED RESIDUE SEQADV 1YZH MSE A 171 UNP P67506 MET 171 MODIFIED RESIDUE SEQADV 1YZH MSE A 190 UNP P67506 MET 190 MODIFIED RESIDUE SEQADV 1YZH SER B -2 UNP P67506 CLONING ARTIFACT SEQADV 1YZH ASN B -1 UNP P67506 CLONING ARTIFACT SEQADV 1YZH ALA B 0 UNP P67506 CLONING ARTIFACT SEQADV 1YZH MSE B 1 UNP P67506 MET 1 MODIFIED RESIDUE SEQADV 1YZH MSE B 56 UNP P67506 MET 56 MODIFIED RESIDUE SEQADV 1YZH MSE B 171 UNP P67506 MET 171 MODIFIED RESIDUE SEQADV 1YZH MSE B 190 UNP P67506 MET 190 MODIFIED RESIDUE SEQRES 1 A 214 SER ASN ALA MSE ARG VAL ARG ASN ARG LYS GLY ALA THR SEQRES 2 A 214 GLU LEU LEU GLU ALA ASN PRO GLN TYR VAL VAL LEU ASN SEQRES 3 A 214 PRO LEU GLU ALA LYS ALA LYS TRP ARG ASP LEU PHE GLY SEQRES 4 A 214 ASN ASP ASN PRO ILE HIS VAL GLU VAL GLY SER GLY LYS SEQRES 5 A 214 GLY ALA PHE VAL SER GLY MSE ALA LYS GLN ASN PRO ASP SEQRES 6 A 214 ILE ASN TYR ILE GLY ILE ASP ILE GLN LYS SER VAL LEU SEQRES 7 A 214 SER TYR ALA LEU ASP LYS VAL LEU GLU VAL GLY VAL PRO SEQRES 8 A 214 ASN ILE LYS LEU LEU TRP VAL ASP GLY SER ASP LEU THR SEQRES 9 A 214 ASP TYR PHE GLU ASP GLY GLU ILE ASP ARG LEU TYR LEU SEQRES 10 A 214 ASN PHE SER ASP PRO TRP PRO LYS LYS ARG HIS GLU LYS SEQRES 11 A 214 ARG ARG LEU THR TYR LYS THR PHE LEU ASP THR PHE LYS SEQRES 12 A 214 ARG ILE LEU PRO GLU ASN GLY GLU ILE HIS PHE LYS THR SEQRES 13 A 214 ASP ASN ARG GLY LEU PHE GLU TYR SER LEU VAL SER PHE SEQRES 14 A 214 SER GLN TYR GLY MSE LYS LEU ASN GLY VAL TRP LEU ASP SEQRES 15 A 214 LEU HIS ALA SER ASP PHE GLU GLY ASN VAL MSE THR GLU SEQRES 16 A 214 TYR GLU GLN LYS PHE SER ASN LYS GLY GLN VAL ILE TYR SEQRES 17 A 214 ARG VAL GLU ALA GLU PHE SEQRES 1 B 214 SER ASN ALA MSE ARG VAL ARG ASN ARG LYS GLY ALA THR SEQRES 2 B 214 GLU LEU LEU GLU ALA ASN PRO GLN TYR VAL VAL LEU ASN SEQRES 3 B 214 PRO LEU GLU ALA LYS ALA LYS TRP ARG ASP LEU PHE GLY SEQRES 4 B 214 ASN ASP ASN PRO ILE HIS VAL GLU VAL GLY SER GLY LYS SEQRES 5 B 214 GLY ALA PHE VAL SER GLY MSE ALA LYS GLN ASN PRO ASP SEQRES 6 B 214 ILE ASN TYR ILE GLY ILE ASP ILE GLN LYS SER VAL LEU SEQRES 7 B 214 SER TYR ALA LEU ASP LYS VAL LEU GLU VAL GLY VAL PRO SEQRES 8 B 214 ASN ILE LYS LEU LEU TRP VAL ASP GLY SER ASP LEU THR SEQRES 9 B 214 ASP TYR PHE GLU ASP GLY GLU ILE ASP ARG LEU TYR LEU SEQRES 10 B 214 ASN PHE SER ASP PRO TRP PRO LYS LYS ARG HIS GLU LYS SEQRES 11 B 214 ARG ARG LEU THR TYR LYS THR PHE LEU ASP THR PHE LYS SEQRES 12 B 214 ARG ILE LEU PRO GLU ASN GLY GLU ILE HIS PHE LYS THR SEQRES 13 B 214 ASP ASN ARG GLY LEU PHE GLU TYR SER LEU VAL SER PHE SEQRES 14 B 214 SER GLN TYR GLY MSE LYS LEU ASN GLY VAL TRP LEU ASP SEQRES 15 B 214 LEU HIS ALA SER ASP PHE GLU GLY ASN VAL MSE THR GLU SEQRES 16 B 214 TYR GLU GLN LYS PHE SER ASN LYS GLY GLN VAL ILE TYR SEQRES 17 B 214 ARG VAL GLU ALA GLU PHE MODRES 1YZH MSE A 56 MET SELENOMETHIONINE MODRES 1YZH MSE A 171 MET SELENOMETHIONINE MODRES 1YZH MSE A 190 MET SELENOMETHIONINE MODRES 1YZH MSE B 56 MET SELENOMETHIONINE MODRES 1YZH MSE B 171 MET SELENOMETHIONINE MODRES 1YZH MSE B 190 MET SELENOMETHIONINE HET MSE A 56 8 HET MSE A 171 8 HET MSE A 190 8 HET MSE B 56 8 HET MSE B 171 8 HET MSE B 190 8 HET GOL B 501 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *344(H2 O) HELIX 1 1 GLY A 8 ALA A 15 1 8 HELIX 2 2 ASN A 23 ALA A 27 5 5 HELIX 3 3 LYS A 30 GLY A 36 1 7 HELIX 4 4 GLY A 50 ASN A 60 1 11 HELIX 5 5 GLN A 71 GLY A 86 1 16 HELIX 6 6 ASP A 99 TYR A 103 5 5 HELIX 7 7 LYS A 122 ARG A 129 5 8 HELIX 8 8 TYR A 132 LEU A 143 1 12 HELIX 9 9 ASN A 155 GLY A 170 1 16 HELIX 10 10 ASP A 179 SER A 183 5 5 HELIX 11 11 THR A 191 PHE A 197 1 7 HELIX 12 12 SER A 198 GLY A 201 5 4 HELIX 13 13 GLY B 8 ALA B 15 1 8 HELIX 14 14 LYS B 30 GLY B 36 1 7 HELIX 15 15 GLY B 50 ASN B 60 1 11 HELIX 16 16 GLN B 71 GLY B 86 1 16 HELIX 17 17 ASP B 99 TYR B 103 5 5 HELIX 18 18 LYS B 122 ARG B 129 5 8 HELIX 19 19 TYR B 132 LEU B 143 1 12 HELIX 20 20 ASN B 155 GLY B 170 1 16 HELIX 21 21 ASP B 179 SER B 183 5 5 HELIX 22 22 THR B 191 SER B 198 1 8 SHEET 1 A 8 VAL A 20 VAL A 21 0 SHEET 2 A 8 ILE A 90 TRP A 94 1 O LEU A 92 N VAL A 21 SHEET 3 A 8 ASN A 64 ASP A 69 1 N GLY A 67 O LEU A 93 SHEET 4 A 8 ILE A 41 VAL A 45 1 N HIS A 42 O ASN A 64 SHEET 5 A 8 ARG A 111 ASN A 115 1 O TYR A 113 N VAL A 43 SHEET 6 A 8 GLU A 148 THR A 153 1 O HIS A 150 N LEU A 112 SHEET 7 A 8 TYR A 205 GLU A 210 -1 O TYR A 205 N THR A 153 SHEET 8 A 8 LYS A 172 TRP A 177 -1 N TRP A 177 O ARG A 206 SHEET 1 B 8 VAL B 20 VAL B 21 0 SHEET 2 B 8 ILE B 90 TRP B 94 1 O LEU B 92 N VAL B 21 SHEET 3 B 8 ASN B 64 ASP B 69 1 N GLY B 67 O LEU B 93 SHEET 4 B 8 ILE B 41 VAL B 45 1 N GLU B 44 O ILE B 66 SHEET 5 B 8 ARG B 111 ASN B 115 1 O TYR B 113 N VAL B 43 SHEET 6 B 8 GLU B 148 THR B 153 1 O HIS B 150 N LEU B 112 SHEET 7 B 8 TYR B 205 GLU B 210 -1 O TYR B 205 N THR B 153 SHEET 8 B 8 LYS B 172 TRP B 177 -1 N TRP B 177 O ARG B 206 LINK C GLY A 55 N MSE A 56 1555 1555 1.34 LINK C MSE A 56 N ALA A 57 1555 1555 1.33 LINK C GLY A 170 N MSE A 171 1555 1555 1.34 LINK C MSE A 171 N LYS A 172 1555 1555 1.33 LINK C VAL A 189 N MSE A 190 1555 1555 1.33 LINK C MSE A 190 N THR A 191 1555 1555 1.33 LINK C GLY B 55 N MSE B 56 1555 1555 1.33 LINK C MSE B 56 N ALA B 57 1555 1555 1.34 LINK C GLY B 170 N MSE B 171 1555 1555 1.34 LINK C MSE B 171 N LYS B 172 1555 1555 1.32 LINK C VAL B 189 N MSE B 190 1555 1555 1.33 LINK C MSE B 190 N THR B 191 1555 1555 1.33 SITE 1 AC1 3 ASP B 110 ARG B 111 GLU B 148 CRYST1 165.613 41.253 78.658 90.00 111.87 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006038 0.000000 0.002424 0.00000 SCALE2 0.000000 0.024241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013699 0.00000