HEADER PROTEIN TRANSPORT 01-MAR-05 1Z0J TITLE STRUCTURE OF GTP-BOUND RAB22Q64L GTPASE IN COMPLEX WITH THE MINIMAL TITLE 2 RAB BINDING DOMAIN OF RABENOSYN-5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-22A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RAB-22; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FYVE-FINGER-CONTAINING RAB5 EFFECTOR PROTEIN RABENOSYN-5; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: MINIMAL RAB BINDING DOMAIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RAB22A, RAB22; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) CODON PLUS-RIL CELLS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: 6XHIS FUSION, PET; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET15B KEYWDS RAB EFFECTOR, RAB GTPASE, RAB22 GTPASE, RABENOSYN, ENDOSOMAL KEYWDS 2 TRAFFICKING, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR S.EATHIRAJ,X.PAN,C.RITACCO,D.G.LAMBRIGHT REVDAT 6 03-APR-24 1Z0J 1 REMARK REVDAT 5 14-FEB-24 1Z0J 1 REMARK REVDAT 4 20-OCT-21 1Z0J 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1Z0J 1 VERSN REVDAT 2 24-FEB-09 1Z0J 1 VERSN REVDAT 1 26-JUL-05 1Z0J 0 JRNL AUTH S.EATHIRAJ,X.PAN,C.RITACCO,D.G.LAMBRIGHT JRNL TITL STRUCTURAL BASIS OF FAMILY-WIDE RAB GTPASE RECOGNITION BY JRNL TITL 2 RABENOSYN-5. JRNL REF NATURE V. 436 415 2005 JRNL REFN ISSN 0028-0836 JRNL PMID 16034420 JRNL DOI 10.1038/NATURE03798 REMARK 2 REMARK 2 RESOLUTION. 1.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.1 REMARK 3 NUMBER OF REFLECTIONS : 42797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2264 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2021 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.5150 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.5740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1716 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 301 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.803 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1793 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2432 ; 1.190 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 218 ; 5.414 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;26.389 ;24.231 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 310 ;12.257 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;12.094 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 278 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1310 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 849 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1231 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 265 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 53 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Z0J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46168 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.2 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03800 REMARK 200 FOR THE DATA SET : 54.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 49.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38100 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: RAB22 GTPASE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 6000, 50MM NA ACETATE, PH 5.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.53750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.98000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.94850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.98000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.53750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.94850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 169 REMARK 465 GLY B 726 REMARK 465 SER B 727 REMARK 465 PRO B 728 REMARK 465 GLU B 729 REMARK 465 ALA B 730 REMARK 465 GLU B 731 REMARK 465 GLU B 732 REMARK 465 PRO B 733 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 1 OG REMARK 470 GLU B 735 CG CD OE1 OE2 REMARK 470 GLN B 741 CG CD OE1 NE2 REMARK 470 PHE B 751 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 752 CG OD1 OD2 REMARK 470 GLN B 755 CG CD OE1 NE2 REMARK 470 CYS B 756 SG REMARK 470 ARG B 758 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 759 CG CD1 CD2 REMARK 470 GLU B 763 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 756 -155.43 -89.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 400 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 19 OG REMARK 620 2 THR A 37 OG1 84.9 REMARK 620 3 GTP A 500 O2G 175.4 90.5 REMARK 620 4 GTP A 500 O2B 92.4 177.0 92.2 REMARK 620 5 HOH A1004 O 87.2 88.4 92.9 90.1 REMARK 620 6 HOH A1006 O 88.9 90.9 91.0 90.4 176.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1002 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CONSTRUCT USED FOR THE CRYSTALLIZATION CONTAINS REMARK 999 PCR INDUCED V22M MUTATION DBREF 1Z0J A 2 169 UNP P35285 RB22A_MOUSE 2 169 DBREF 1Z0J B 728 784 GB 11641241 NP_071735 728 784 SEQADV 1Z0J GLY A 0 UNP P35285 CLONING ARTIFACT SEQADV 1Z0J SER A 1 UNP P35285 CLONING ARTIFACT SEQADV 1Z0J MET A 22 UNP P35285 VAL 22 SEE REMARK 999 SEQADV 1Z0J LEU A 64 UNP P35285 GLN 64 ENGINEERED MUTATION SEQADV 1Z0J GLY B 726 GB 11641241 CLONING ARTIFACT SEQADV 1Z0J SER B 727 GB 11641241 CLONING ARTIFACT SEQRES 1 A 170 GLY SER ALA LEU ARG GLU LEU LYS VAL CYS LEU LEU GLY SEQRES 2 A 170 ASP THR GLY VAL GLY LYS SER SER ILE MET TRP ARG PHE SEQRES 3 A 170 VAL GLU ASP SER PHE ASP PRO ASN ILE ASN PRO THR ILE SEQRES 4 A 170 GLY ALA SER PHE MET THR LYS THR VAL GLN TYR GLN ASN SEQRES 5 A 170 GLU LEU HIS LYS PHE LEU ILE TRP ASP THR ALA GLY LEU SEQRES 6 A 170 GLU ARG PHE ARG ALA LEU ALA PRO MET TYR TYR ARG GLY SEQRES 7 A 170 SER ALA ALA ALA ILE ILE VAL TYR ASP ILE THR LYS GLU SEQRES 8 A 170 GLU THR PHE SER THR LEU LYS ASN TRP VAL ARG GLU LEU SEQRES 9 A 170 ARG GLN HIS GLY PRO PRO SER ILE VAL VAL ALA ILE ALA SEQRES 10 A 170 GLY ASN LYS CYS ASP LEU THR ASP VAL ARG GLU VAL MET SEQRES 11 A 170 GLU ARG ASP ALA LYS ASP TYR ALA ASP SER ILE HIS ALA SEQRES 12 A 170 ILE PHE VAL GLU THR SER ALA LYS ASN ALA ILE ASN ILE SEQRES 13 A 170 ASN GLU LEU PHE ILE GLU ILE SER ARG ARG ILE PRO SER SEQRES 14 A 170 THR SEQRES 1 B 59 GLY SER PRO GLU ALA GLU GLU PRO ILE GLU GLU GLU LEU SEQRES 2 B 59 LEU LEU GLN GLN ILE ASP ASN ILE LYS ALA TYR ILE PHE SEQRES 3 B 59 ASP ALA LYS GLN CYS GLY ARG LEU ASP GLU VAL GLU VAL SEQRES 4 B 59 LEU THR GLU ASN LEU ARG GLU LEU LYS HIS THR LEU ALA SEQRES 5 B 59 LYS GLN LYS GLY GLY THR ASP HET MG A 400 1 HET GTP A 500 32 HET TRS A1001 8 HET GOL A1002 6 HETNAM MG MAGNESIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG MG 2+ FORMUL 4 GTP C10 H16 N5 O14 P3 FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *301(H2 O) HELIX 1 1 GLY A 17 ASP A 28 1 12 HELIX 2 2 LEU A 64 LEU A 70 5 7 HELIX 3 3 ALA A 71 ARG A 76 1 6 HELIX 4 4 LYS A 89 GLY A 107 1 19 HELIX 5 5 LEU A 122 ARG A 126 5 5 HELIX 6 6 MET A 129 ILE A 140 1 12 HELIX 7 7 ASN A 154 ILE A 166 1 13 HELIX 8 8 GLU B 735 CYS B 756 1 22 HELIX 9 9 ARG B 758 LYS B 780 1 23 SHEET 1 A 6 ALA A 40 TYR A 49 0 SHEET 2 A 6 GLU A 52 THR A 61 -1 O ILE A 58 N MET A 43 SHEET 3 A 6 LEU A 3 LEU A 11 1 N LEU A 10 O TRP A 59 SHEET 4 A 6 ALA A 80 ASP A 86 1 O VAL A 84 N LEU A 11 SHEET 5 A 6 VAL A 112 ASN A 118 1 O ALA A 114 N ILE A 83 SHEET 6 A 6 ILE A 143 GLU A 146 1 O ILE A 143 N ILE A 115 LINK OG SER A 19 MG MG A 400 1555 1555 2.06 LINK OG1 THR A 37 MG MG A 400 1555 1555 2.11 LINK MG MG A 400 O2G GTP A 500 1555 1555 2.03 LINK MG MG A 400 O2B GTP A 500 1555 1555 2.04 LINK MG MG A 400 O HOH A1004 1555 1555 2.08 LINK MG MG A 400 O HOH A1006 1555 1555 2.15 SITE 1 AC1 5 SER A 19 THR A 37 GTP A 500 HOH A1004 SITE 2 AC1 5 HOH A1006 SITE 1 AC2 28 THR A 14 GLY A 15 VAL A 16 GLY A 17 SITE 2 AC2 28 LYS A 18 SER A 19 SER A 20 PHE A 30 SITE 3 AC2 28 ASP A 31 PRO A 32 ILE A 34 PRO A 36 SITE 4 AC2 28 THR A 37 GLY A 63 ASN A 118 LYS A 119 SITE 5 AC2 28 ASP A 121 SER A 148 ALA A 149 LYS A 150 SITE 6 AC2 28 MG A 400 HOH A1004 HOH A1006 HOH A1008 SITE 7 AC2 28 HOH A1011 HOH A1013 HOH A1044 HOH A1135 SITE 1 AC3 7 LYS A 89 ARG A 104 PRO A 108 PRO A 109 SITE 2 AC3 7 ILE A 111 ILE A 140 GOL A1002 SITE 1 AC4 8 ASP A 86 THR A 88 LYS A 89 ARG A 104 SITE 2 AC4 8 PRO A 109 LYS A 119 TRS A1001 HOH A1026 CRYST1 45.075 55.897 85.960 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022185 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011633 0.00000