HEADER SUGAR BINDING PROTEIN 02-MAR-05 1Z0M TITLE THE GLYCOGEN-BINDING DOMAIN OF THE AMP-ACTIVATED PROTEIN KINASE BETA1 TITLE 2 SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-AMP-ACTIVATED PROTEIN KINASE, BETA-1 SUBUNIT; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: 68-163 OF BETA1 SUBUNIT; COMPND 5 SYNONYM: AMPK BETA-1 CHAIN, AMPKB, 40 KDA SUBUNIT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX HT KEYWDS BETA SANDWICH, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.POLEKHINA,A.GUPTA,B.J.VAN DENDEREN,S.C.FEIL,B.E.KEMP,D.STAPLETON, AUTHOR 2 M.W.PARKER REVDAT 5 13-MAR-24 1Z0M 1 HETSYN REVDAT 4 29-JUL-20 1Z0M 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 HETSYN FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 11-OCT-17 1Z0M 1 REMARK REVDAT 2 24-FEB-09 1Z0M 1 VERSN REVDAT 1 25-OCT-05 1Z0M 0 JRNL AUTH G.POLEKHINA,A.GUPTA,B.J.VAN DENDEREN,S.C.FEIL,B.E.KEMP, JRNL AUTH 2 D.STAPLETON,M.W.PARKER JRNL TITL STRUCTURAL BASIS FOR GLYCOGEN RECOGNITION BY AMP-ACTIVATED JRNL TITL 2 PROTEIN KINASE. JRNL REF STRUCTURE V. 13 1453 2005 JRNL REFN ISSN 0969-2126 JRNL PMID 16216577 JRNL DOI 10.1016/J.STR.2005.07.008 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.POLEKHINA,S.C.FEIL,A.GUPTA,P.O'DONNELL,D.STAPLETON, REMARK 1 AUTH 2 M.W.PARKER REMARK 1 TITL CRYSTALLIZATION OF THE GLYCOGEN-BINDING DOMAIN OF THE REMARK 1 TITL 2 AMP-ACTIVATED PROTEIN KINASE BETA SUBUNIT AND PRELIMINARY REMARK 1 TITL 3 X-RAY ANALYSIS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 61 39 2005 REMARK 1 REFN ESSN 1744-3091 REMARK 1 DOI 10.1107/S1744309104025059 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 23738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1213 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1280 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 231 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.14000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : 3.01000 REMARK 3 B12 (A**2) : 0.94000 REMARK 3 B13 (A**2) : -1.29000 REMARK 3 B23 (A**2) : -2.13000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.108 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2313 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3186 ; 1.739 ; 2.048 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 245 ; 7.818 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;33.902 ;24.615 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 322 ;16.499 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;19.741 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 403 ; 0.201 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1740 ; 0.036 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 901 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1580 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 156 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 92 ; 0.234 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 51 ; 0.241 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1255 ; 2.888 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2008 ; 4.132 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1180 ; 3.089 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1178 ; 4.195 ; 3.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 79 A 95 2 REMARK 3 1 B 79 B 95 2 REMARK 3 1 C 79 C 95 2 REMARK 3 2 A 102 A 104 2 REMARK 3 2 B 102 B 104 2 REMARK 3 2 C 102 C 104 2 REMARK 3 3 A 112 A 143 2 REMARK 3 3 B 112 B 143 2 REMARK 3 3 C 112 C 143 2 REMARK 3 4 A 149 A 152 2 REMARK 3 4 B 149 B 152 2 REMARK 3 4 C 149 C 152 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 212 ; 0.260 ; 0.250 REMARK 3 TIGHT POSITIONAL 1 B (A): 212 ; 0.220 ; 0.250 REMARK 3 TIGHT POSITIONAL 1 C (A): 212 ; 0.310 ; 0.250 REMARK 3 MEDIUM POSITIONAL 1 A (A): 213 ; 0.670 ; 0.600 REMARK 3 MEDIUM POSITIONAL 1 B (A): 213 ; 0.590 ; 0.600 REMARK 3 MEDIUM POSITIONAL 1 C (A): 213 ; 0.680 ; 0.600 REMARK 3 TIGHT THERMAL 1 A (A**2): 212 ; 3.140 ; 3.000 REMARK 3 TIGHT THERMAL 1 B (A**2): 212 ; 3.770 ; 3.000 REMARK 3 TIGHT THERMAL 1 C (A**2): 212 ; 5.250 ; 3.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 213 ; 4.700 ; 5.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 213 ; 4.120 ; 5.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 213 ; 5.760 ; 5.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 96 A 101 5 REMARK 3 1 B 96 B 101 5 REMARK 3 1 C 96 C 101 5 REMARK 3 2 A 105 A 111 5 REMARK 3 2 B 105 B 111 5 REMARK 3 2 C 105 C 111 5 REMARK 3 3 A 144 A 148 5 REMARK 3 3 B 144 B 148 5 REMARK 3 3 C 144 C 148 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 72 ; 0.360 ; 0.800 REMARK 3 MEDIUM POSITIONAL 2 B (A): 72 ; 0.570 ; 0.800 REMARK 3 MEDIUM POSITIONAL 2 C (A): 72 ; 0.410 ; 0.800 REMARK 3 LOOSE POSITIONAL 2 A (A): 72 ; 0.900 ; 5.000 REMARK 3 LOOSE POSITIONAL 2 B (A): 72 ; 1.100 ; 5.000 REMARK 3 LOOSE POSITIONAL 2 C (A): 72 ; 0.970 ; 5.000 REMARK 3 MEDIUM THERMAL 2 A (A**2): 72 ; 5.610 ; 2.000 REMARK 3 MEDIUM THERMAL 2 B (A**2): 72 ; 2.820 ; 2.000 REMARK 3 MEDIUM THERMAL 2 C (A**2): 72 ; 5.530 ; 2.000 REMARK 3 LOOSE THERMAL 2 A (A**2): 72 ; 6.160 ;10.000 REMARK 3 LOOSE THERMAL 2 B (A**2): 72 ; 3.940 ;10.000 REMARK 3 LOOSE THERMAL 2 C (A**2): 72 ; 6.940 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z0M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032147. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23738 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.18100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIR+NCS AVERAGING REMARK 200 SOFTWARE USED: MLPHARE, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, MONOMETHYL ETHER 5000, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 299K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 68 REMARK 465 VAL A 69 REMARK 465 ASN A 70 REMARK 465 GLU A 71 REMARK 465 LYS A 72 REMARK 465 ALA A 73 REMARK 465 PRO A 74 REMARK 465 ALA A 75 REMARK 465 GLN A 76 REMARK 465 GLU B 68 REMARK 465 VAL B 69 REMARK 465 ASN B 70 REMARK 465 GLU B 71 REMARK 465 LYS B 72 REMARK 465 ALA B 73 REMARK 465 PRO B 74 REMARK 465 ALA B 75 REMARK 465 LYS B 157 REMARK 465 THR B 158 REMARK 465 ASP B 159 REMARK 465 PHE B 160 REMARK 465 GLU B 161 REMARK 465 VAL B 162 REMARK 465 PHE B 163 REMARK 465 GLU C 68 REMARK 465 VAL C 69 REMARK 465 ASN C 70 REMARK 465 GLU C 71 REMARK 465 LYS C 72 REMARK 465 ALA C 73 REMARK 465 PRO C 74 REMARK 465 ALA C 75 REMARK 465 GLN C 76 REMARK 465 LYS C 157 REMARK 465 THR C 158 REMARK 465 ASP C 159 REMARK 465 PHE C 160 REMARK 465 GLU C 161 REMARK 465 VAL C 162 REMARK 465 PHE C 163 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASN A 110 O HOH A 265 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O3 GLC E 5 O HOH A 254 1465 2.06 REMARK 500 O HOH A 235 O HOH B 233 1545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 110 -1.08 72.87 REMARK 500 ASP A 130 54.73 38.06 REMARK 500 LYS A 156 -142.34 -119.49 REMARK 500 ASN C 110 -2.07 59.90 REMARK 500 ASP C 130 47.73 39.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z0N RELATED DB: PDB REMARK 900 L105M MUTANT DBREF 1Z0M A 68 163 UNP P80386 AAKB_RAT 67 162 DBREF 1Z0M B 68 163 UNP P80386 AAKB_RAT 67 162 DBREF 1Z0M C 68 163 UNP P80386 AAKB_RAT 67 162 SEQRES 1 A 96 GLU VAL ASN GLU LYS ALA PRO ALA GLN ALA ARG PRO THR SEQRES 2 A 96 VAL PHE ARG TRP THR GLY GLY GLY LYS GLU VAL TYR LEU SEQRES 3 A 96 SER GLY SER PHE ASN ASN TRP SER LYS LEU PRO LEU THR SEQRES 4 A 96 ARG SER GLN ASN ASN PHE VAL ALA ILE LEU ASP LEU PRO SEQRES 5 A 96 GLU GLY GLU HIS GLN TYR LYS PHE PHE VAL ASP GLY GLN SEQRES 6 A 96 TRP THR HIS ASP PRO SER GLU PRO ILE VAL THR SER GLN SEQRES 7 A 96 LEU GLY THR VAL ASN ASN ILE ILE GLN VAL LYS LYS THR SEQRES 8 A 96 ASP PHE GLU VAL PHE SEQRES 1 B 96 GLU VAL ASN GLU LYS ALA PRO ALA GLN ALA ARG PRO THR SEQRES 2 B 96 VAL PHE ARG TRP THR GLY GLY GLY LYS GLU VAL TYR LEU SEQRES 3 B 96 SER GLY SER PHE ASN ASN TRP SER LYS LEU PRO LEU THR SEQRES 4 B 96 ARG SER GLN ASN ASN PHE VAL ALA ILE LEU ASP LEU PRO SEQRES 5 B 96 GLU GLY GLU HIS GLN TYR LYS PHE PHE VAL ASP GLY GLN SEQRES 6 B 96 TRP THR HIS ASP PRO SER GLU PRO ILE VAL THR SER GLN SEQRES 7 B 96 LEU GLY THR VAL ASN ASN ILE ILE GLN VAL LYS LYS THR SEQRES 8 B 96 ASP PHE GLU VAL PHE SEQRES 1 C 96 GLU VAL ASN GLU LYS ALA PRO ALA GLN ALA ARG PRO THR SEQRES 2 C 96 VAL PHE ARG TRP THR GLY GLY GLY LYS GLU VAL TYR LEU SEQRES 3 C 96 SER GLY SER PHE ASN ASN TRP SER LYS LEU PRO LEU THR SEQRES 4 C 96 ARG SER GLN ASN ASN PHE VAL ALA ILE LEU ASP LEU PRO SEQRES 5 C 96 GLU GLY GLU HIS GLN TYR LYS PHE PHE VAL ASP GLY GLN SEQRES 6 C 96 TRP THR HIS ASP PRO SER GLU PRO ILE VAL THR SER GLN SEQRES 7 C 96 LEU GLY THR VAL ASN ASN ILE ILE GLN VAL LYS LYS THR SEQRES 8 C 96 ASP PHE GLU VAL PHE HET GLC D 1 11 HET GLC D 2 11 HET GLC D 3 11 HET GLC D 4 11 HET GLC D 5 11 HET GLC D 6 11 HET GLC D 7 11 HET GLC E 1 11 HET GLC E 2 11 HET GLC E 3 11 HET GLC E 4 11 HET GLC E 5 11 HET GLC E 6 11 HET GLC E 7 11 HET GLC F 1 11 HET GLC F 2 11 HET GLC F 3 11 HET GLC F 4 11 HET GLC F 5 11 HET GLC F 6 11 HET GLC F 7 11 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 4 GLC 21(C6 H12 O6) FORMUL 7 HOH *200(H2 O) HELIX 1 1 PHE A 97 ASN A 99 5 3 HELIX 2 2 PHE B 97 ASN B 99 5 3 HELIX 3 3 PHE C 97 ASN C 99 5 3 SHEET 1 A 4 THR A 106 SER A 108 0 SHEET 2 A 4 ASN A 111 LEU A 118 -1 O ASN A 111 N SER A 108 SHEET 3 A 4 ARG A 78 TRP A 84 -1 N ARG A 78 O LEU A 118 SHEET 4 A 4 GLU A 161 PHE A 163 1 O PHE A 163 N VAL A 81 SHEET 1 B 4 LEU A 103 PRO A 104 0 SHEET 2 B 4 VAL A 91 GLY A 95 -1 N LEU A 93 O LEU A 103 SHEET 3 B 4 GLY A 121 VAL A 129 -1 O LYS A 126 N SER A 94 SHEET 4 B 4 GLN A 132 THR A 134 -1 O GLN A 132 N VAL A 129 SHEET 1 C 5 LEU A 103 PRO A 104 0 SHEET 2 C 5 VAL A 91 GLY A 95 -1 N LEU A 93 O LEU A 103 SHEET 3 C 5 GLY A 121 VAL A 129 -1 O LYS A 126 N SER A 94 SHEET 4 C 5 VAL A 149 VAL A 155 -1 O ASN A 151 N TYR A 125 SHEET 5 C 5 ILE A 141 THR A 143 -1 N VAL A 142 O ASN A 150 SHEET 1 D 3 ALA B 77 TRP B 84 0 SHEET 2 D 3 ASN B 111 PRO B 119 -1 O LEU B 118 N ARG B 78 SHEET 3 D 3 THR B 106 SER B 108 -1 N SER B 108 O ASN B 111 SHEET 1 E 4 LEU B 103 PRO B 104 0 SHEET 2 E 4 VAL B 91 GLY B 95 -1 N LEU B 93 O LEU B 103 SHEET 3 E 4 GLY B 121 VAL B 129 -1 O LYS B 126 N SER B 94 SHEET 4 E 4 GLN B 132 THR B 134 -1 O GLN B 132 N VAL B 129 SHEET 1 F 5 LEU B 103 PRO B 104 0 SHEET 2 F 5 VAL B 91 GLY B 95 -1 N LEU B 93 O LEU B 103 SHEET 3 F 5 GLY B 121 VAL B 129 -1 O LYS B 126 N SER B 94 SHEET 4 F 5 VAL B 149 VAL B 155 -1 O VAL B 155 N GLY B 121 SHEET 5 F 5 ILE B 141 THR B 143 -1 N VAL B 142 O ASN B 150 SHEET 1 G 3 ARG C 78 TRP C 84 0 SHEET 2 G 3 ASN C 111 LEU C 118 -1 O LEU C 116 N THR C 80 SHEET 3 G 3 THR C 106 SER C 108 -1 N SER C 108 O ASN C 111 SHEET 1 H 4 LEU C 103 PRO C 104 0 SHEET 2 H 4 VAL C 91 GLY C 95 -1 N LEU C 93 O LEU C 103 SHEET 3 H 4 GLY C 121 VAL C 129 -1 O LYS C 126 N SER C 94 SHEET 4 H 4 GLN C 132 THR C 134 -1 O THR C 134 N PHE C 127 SHEET 1 I 5 LEU C 103 PRO C 104 0 SHEET 2 I 5 VAL C 91 GLY C 95 -1 N LEU C 93 O LEU C 103 SHEET 3 I 5 GLY C 121 VAL C 129 -1 O LYS C 126 N SER C 94 SHEET 4 I 5 VAL C 149 VAL C 155 -1 O VAL C 155 N GLY C 121 SHEET 5 I 5 ILE C 141 THR C 143 -1 N VAL C 142 O ASN C 150 LINK O4 GLC D 1 C1 GLC D 2 1555 1555 1.45 LINK C1 GLC D 1 O4 GLC D 7 1555 1555 1.44 LINK O4 GLC D 2 C1 GLC D 3 1555 1555 1.44 LINK O4 GLC D 3 C1 GLC D 4 1555 1555 1.43 LINK O4 GLC D 4 C1 GLC D 5 1555 1555 1.45 LINK O4 GLC D 5 C1 GLC D 6 1555 1555 1.44 LINK O4 GLC D 6 C1 GLC D 7 1555 1555 1.42 LINK O4 GLC E 1 C1 GLC E 2 1555 1555 1.43 LINK C1 GLC E 1 O4 GLC E 7 1555 1555 1.43 LINK O4 GLC E 2 C1 GLC E 3 1555 1555 1.44 LINK O4 GLC E 3 C1 GLC E 4 1555 1555 1.44 LINK O4 GLC E 4 C1 GLC E 5 1555 1555 1.46 LINK O4 GLC E 5 C1 GLC E 6 1555 1555 1.44 LINK O4 GLC E 6 C1 GLC E 7 1555 1555 1.43 LINK O4 GLC F 1 C1 GLC F 2 1555 1555 1.43 LINK C1 GLC F 1 O4 GLC F 7 1555 1555 1.43 LINK O4 GLC F 2 C1 GLC F 3 1555 1555 1.44 LINK O4 GLC F 3 C1 GLC F 4 1555 1555 1.45 LINK O4 GLC F 4 C1 GLC F 5 1555 1555 1.42 LINK O4 GLC F 5 C1 GLC F 6 1555 1555 1.42 LINK O4 GLC F 6 C1 GLC F 7 1555 1555 1.42 CRYST1 43.735 44.891 50.335 70.72 68.77 65.79 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022860 -0.010280 -0.006840 0.00000 SCALE2 0.000000 0.024420 -0.005340 0.00000 SCALE3 0.000000 0.000000 0.021820 0.00000