HEADER HYDROLASE 08-MAR-05 1Z2L TITLE CRYSTAL STRUCTURE OF ALLANTOATE-AMIDOHYDROLASE FROM E.COLI K12 IN TITLE 2 COMPLEX WITH SUBSTRATE ALLANTOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALLANTOATE AMIDOHYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.3.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: ALLC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: TOPO KEYWDS ALLANTOATE-AMIDOHYDROLASE, ALLANTOATE, ALLC, PURINE CATABOLISM, KEYWDS 2 ALLANTOIN UTILIZATION, T1507, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS, NYSGXRC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.AGARWAL,S.SWAMINATHAN,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 14-FEB-24 1Z2L 1 REMARK REVDAT 5 03-FEB-21 1Z2L 1 AUTHOR JRNL REMARK SEQADV REVDAT 5 2 1 LINK REVDAT 4 13-JUL-11 1Z2L 1 VERSN REVDAT 3 24-FEB-09 1Z2L 1 VERSN REVDAT 2 21-OCT-08 1Z2L 1 JRNL REVDAT 1 22-MAR-05 1Z2L 0 JRNL AUTH R.AGARWAL,S.K.BURLEY,S.SWAMINATHAN JRNL TITL STRUCTURAL ANALYSIS OF A TERNARY COMPLEX OF ALLANTOATE JRNL TITL 2 AMIDOHYDROLASE FROM ESCHERICHIA COLI REVEALS ITS MECHANICS. JRNL REF J.MOL.BIOL. V. 368 450 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17362992 JRNL DOI 10.1016/J.JMB.2007.02.028 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 593644.030 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 40329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1211 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6061 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 188 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6405 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.97000 REMARK 3 B22 (A**2) : -2.84000 REMARK 3 B33 (A**2) : -6.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.24 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.34 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.880 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 38.82 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : XYZ.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z2L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032218. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-05; 09-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X25; X25 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9877, 0.9792, 0.94; 1.1 REMARK 200 MONOCHROMATOR : GRAPHITE; GRAPHITE REMARK 200 OPTICS : MIRRORS; MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MARMAD REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41530 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 15.50 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, TRIS, MAGNESIUM CHLORIDE, PH REMARK 280 8.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 47.76600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 93.28950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.76600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 93.28950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -224.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 414 REMARK 465 GLY A 415 REMARK 465 GLY A 416 REMARK 465 SER A 417 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 413 REMARK 465 GLU B 414 REMARK 465 GLY B 415 REMARK 465 GLY B 416 REMARK 465 SER B 417 REMARK 465 HIS B 418 REMARK 465 HIS B 419 REMARK 465 HIS B 420 REMARK 465 HIS B 421 REMARK 465 HIS B 422 REMARK 465 HIS B 423 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 290 O2 1AL B 516 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 88 -70.45 -42.52 REMARK 500 ASN A 89 72.29 -116.43 REMARK 500 ALA A 147 -72.52 -60.08 REMARK 500 ASN A 148 99.43 77.35 REMARK 500 ILE A 155 63.59 -69.39 REMARK 500 ASP A 157 93.76 -172.87 REMARK 500 ALA A 158 -77.59 -75.48 REMARK 500 LYS A 159 56.29 -146.83 REMARK 500 ARG B 31 -79.23 -80.62 REMARK 500 LEU B 32 130.93 72.55 REMARK 500 ASN B 92 -28.60 66.93 REMARK 500 GLU B 127 115.07 60.37 REMARK 500 ARG B 132 -57.21 -130.05 REMARK 500 VAL B 152 -2.67 -152.80 REMARK 500 ASN B 154 -23.68 167.88 REMARK 500 ASP B 157 -173.64 -170.88 REMARK 500 ALA B 158 -141.33 -90.27 REMARK 500 GLU B 194 -40.64 65.61 REMARK 500 SER B 205 -15.38 -142.15 REMARK 500 ASN B 274 52.69 71.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 511 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 ASP A 94 OD2 87.9 REMARK 620 3 HIS A 192 NE2 119.0 87.1 REMARK 620 4 HOH A 629 O 86.9 174.8 95.0 REMARK 620 5 HOH A 631 O 117.6 109.4 121.2 73.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 512 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 94 OD1 REMARK 620 2 GLU A 129 OE2 95.3 REMARK 620 3 HIS A 384 NE2 92.3 89.5 REMARK 620 4 HOH A 631 O 118.4 125.2 127.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 513 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 83 NE2 REMARK 620 2 ASP B 94 OD1 85.6 REMARK 620 3 HIS B 192 NE2 109.9 93.8 REMARK 620 4 HOH B 590 O 86.9 168.9 81.1 REMARK 620 5 HOH B 591 O 132.4 117.7 109.2 73.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 514 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 94 OD2 REMARK 620 2 GLU B 129 OE2 154.3 REMARK 620 3 GLU B 129 OE1 106.3 51.5 REMARK 620 4 HIS B 384 NE2 93.7 81.4 103.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1AL B 516 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-3055C RELATED DB: TARGETDB DBREF 1Z2L A 4 413 UNP P77425 ALLC_ECOLI 2 411 DBREF 1Z2L B 4 413 UNP P77425 ALLC_ECOLI 2 411 SEQADV 1Z2L MET A 1 UNP P77425 EXPRESSION TAG SEQADV 1Z2L SER A 2 UNP P77425 EXPRESSION TAG SEQADV 1Z2L LEU A 3 UNP P77425 EXPRESSION TAG SEQADV 1Z2L GLU A 414 UNP P77425 EXPRESSION TAG SEQADV 1Z2L GLY A 415 UNP P77425 EXPRESSION TAG SEQADV 1Z2L GLY A 416 UNP P77425 EXPRESSION TAG SEQADV 1Z2L SER A 417 UNP P77425 EXPRESSION TAG SEQADV 1Z2L HIS A 418 UNP P77425 EXPRESSION TAG SEQADV 1Z2L HIS A 419 UNP P77425 EXPRESSION TAG SEQADV 1Z2L HIS A 420 UNP P77425 EXPRESSION TAG SEQADV 1Z2L HIS A 421 UNP P77425 EXPRESSION TAG SEQADV 1Z2L HIS A 422 UNP P77425 EXPRESSION TAG SEQADV 1Z2L HIS A 423 UNP P77425 EXPRESSION TAG SEQADV 1Z2L MET B 1 UNP P77425 EXPRESSION TAG SEQADV 1Z2L SER B 2 UNP P77425 EXPRESSION TAG SEQADV 1Z2L LEU B 3 UNP P77425 EXPRESSION TAG SEQADV 1Z2L GLU B 414 UNP P77425 EXPRESSION TAG SEQADV 1Z2L GLY B 415 UNP P77425 EXPRESSION TAG SEQADV 1Z2L GLY B 416 UNP P77425 EXPRESSION TAG SEQADV 1Z2L SER B 417 UNP P77425 EXPRESSION TAG SEQADV 1Z2L HIS B 418 UNP P77425 EXPRESSION TAG SEQADV 1Z2L HIS B 419 UNP P77425 EXPRESSION TAG SEQADV 1Z2L HIS B 420 UNP P77425 EXPRESSION TAG SEQADV 1Z2L HIS B 421 UNP P77425 EXPRESSION TAG SEQADV 1Z2L HIS B 422 UNP P77425 EXPRESSION TAG SEQADV 1Z2L HIS B 423 UNP P77425 EXPRESSION TAG SEQRES 1 A 423 MET SER LEU ILE THR HIS PHE ARG GLN ALA ILE GLU GLU SEQRES 2 A 423 THR LEU PRO TRP LEU SER SER PHE GLY ALA ASP PRO ALA SEQRES 3 A 423 GLY GLY MET THR ARG LEU LEU TYR SER PRO GLU TRP LEU SEQRES 4 A 423 GLU THR GLN GLN GLN PHE LYS LYS ARG MET ALA ALA SER SEQRES 5 A 423 GLY LEU GLU THR ARG PHE ASP GLU VAL GLY ASN LEU TYR SEQRES 6 A 423 GLY ARG LEU ASN GLY THR GLU TYR PRO GLN GLU VAL VAL SEQRES 7 A 423 LEU SER GLY SER HIS ILE ASP THR VAL VAL ASN GLY GLY SEQRES 8 A 423 ASN LEU ASP GLY GLN PHE GLY ALA LEU ALA ALA TRP LEU SEQRES 9 A 423 ALA ILE ASP TRP LEU LYS THR GLN TYR GLY ALA PRO LEU SEQRES 10 A 423 ARG THR VAL GLU VAL VAL ALA MET ALA GLU GLU GLU GLY SEQRES 11 A 423 SER ARG PHE PRO TYR VAL PHE TRP GLY SER LYS ASN ILE SEQRES 12 A 423 PHE GLY LEU ALA ASN PRO ASP ASP VAL ARG ASN ILE CYS SEQRES 13 A 423 ASP ALA LYS GLY ASN SER PHE VAL ASP ALA MET LYS ALA SEQRES 14 A 423 CYS GLY PHE THR LEU PRO ASN ALA PRO LEU THR PRO ARG SEQRES 15 A 423 GLN ASP ILE LYS ALA PHE VAL GLU LEU HIS ILE GLU GLN SEQRES 16 A 423 GLY CYS VAL LEU GLU SER ASN GLY GLN SER ILE GLY VAL SEQRES 17 A 423 VAL ASN ALA ILE VAL GLY GLN ARG ARG TYR THR VAL THR SEQRES 18 A 423 LEU ASN GLY GLU SER ASN HIS ALA GLY THR THR PRO MET SEQRES 19 A 423 GLY TYR ARG ARG ASP THR VAL TYR ALA PHE SER ARG ILE SEQRES 20 A 423 CYS HIS GLN SER VAL GLU LYS ALA LYS ARG MET GLY ASP SEQRES 21 A 423 PRO LEU VAL LEU THR PHE GLY LYS VAL GLU PRO ARG PRO SEQRES 22 A 423 ASN THR VAL ASN VAL VAL PRO GLY LYS THR THR PHE THR SEQRES 23 A 423 ILE ASP CYS ARG HIS THR ASP ALA ALA VAL LEU ARG ASP SEQRES 24 A 423 PHE THR GLN GLN LEU GLU ASN ASP MET ARG ALA ILE CYS SEQRES 25 A 423 ASP GLU MET ASP ILE GLY ILE ASP ILE ASP LEU TRP MET SEQRES 26 A 423 ASP GLU GLU PRO VAL PRO MET ASN LYS GLU LEU VAL ALA SEQRES 27 A 423 THR LEU THR GLU LEU CYS GLU ARG GLU LYS LEU ASN TYR SEQRES 28 A 423 ARG VAL MET HIS SER GLY ALA GLY HIS ASP ALA GLN ILE SEQRES 29 A 423 PHE ALA PRO ARG VAL PRO THR CYS MET ILE PHE ILE PRO SEQRES 30 A 423 SER ILE ASN GLY ILE SER HIS ASN PRO ALA GLU ARG THR SEQRES 31 A 423 ASN ILE THR ASP LEU ALA GLU GLY VAL LYS THR LEU ALA SEQRES 32 A 423 LEU MET LEU TYR GLN LEU ALA TRP GLN LYS GLU GLY GLY SEQRES 33 A 423 SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 423 MET SER LEU ILE THR HIS PHE ARG GLN ALA ILE GLU GLU SEQRES 2 B 423 THR LEU PRO TRP LEU SER SER PHE GLY ALA ASP PRO ALA SEQRES 3 B 423 GLY GLY MET THR ARG LEU LEU TYR SER PRO GLU TRP LEU SEQRES 4 B 423 GLU THR GLN GLN GLN PHE LYS LYS ARG MET ALA ALA SER SEQRES 5 B 423 GLY LEU GLU THR ARG PHE ASP GLU VAL GLY ASN LEU TYR SEQRES 6 B 423 GLY ARG LEU ASN GLY THR GLU TYR PRO GLN GLU VAL VAL SEQRES 7 B 423 LEU SER GLY SER HIS ILE ASP THR VAL VAL ASN GLY GLY SEQRES 8 B 423 ASN LEU ASP GLY GLN PHE GLY ALA LEU ALA ALA TRP LEU SEQRES 9 B 423 ALA ILE ASP TRP LEU LYS THR GLN TYR GLY ALA PRO LEU SEQRES 10 B 423 ARG THR VAL GLU VAL VAL ALA MET ALA GLU GLU GLU GLY SEQRES 11 B 423 SER ARG PHE PRO TYR VAL PHE TRP GLY SER LYS ASN ILE SEQRES 12 B 423 PHE GLY LEU ALA ASN PRO ASP ASP VAL ARG ASN ILE CYS SEQRES 13 B 423 ASP ALA LYS GLY ASN SER PHE VAL ASP ALA MET LYS ALA SEQRES 14 B 423 CYS GLY PHE THR LEU PRO ASN ALA PRO LEU THR PRO ARG SEQRES 15 B 423 GLN ASP ILE LYS ALA PHE VAL GLU LEU HIS ILE GLU GLN SEQRES 16 B 423 GLY CYS VAL LEU GLU SER ASN GLY GLN SER ILE GLY VAL SEQRES 17 B 423 VAL ASN ALA ILE VAL GLY GLN ARG ARG TYR THR VAL THR SEQRES 18 B 423 LEU ASN GLY GLU SER ASN HIS ALA GLY THR THR PRO MET SEQRES 19 B 423 GLY TYR ARG ARG ASP THR VAL TYR ALA PHE SER ARG ILE SEQRES 20 B 423 CYS HIS GLN SER VAL GLU LYS ALA LYS ARG MET GLY ASP SEQRES 21 B 423 PRO LEU VAL LEU THR PHE GLY LYS VAL GLU PRO ARG PRO SEQRES 22 B 423 ASN THR VAL ASN VAL VAL PRO GLY LYS THR THR PHE THR SEQRES 23 B 423 ILE ASP CYS ARG HIS THR ASP ALA ALA VAL LEU ARG ASP SEQRES 24 B 423 PHE THR GLN GLN LEU GLU ASN ASP MET ARG ALA ILE CYS SEQRES 25 B 423 ASP GLU MET ASP ILE GLY ILE ASP ILE ASP LEU TRP MET SEQRES 26 B 423 ASP GLU GLU PRO VAL PRO MET ASN LYS GLU LEU VAL ALA SEQRES 27 B 423 THR LEU THR GLU LEU CYS GLU ARG GLU LYS LEU ASN TYR SEQRES 28 B 423 ARG VAL MET HIS SER GLY ALA GLY HIS ASP ALA GLN ILE SEQRES 29 B 423 PHE ALA PRO ARG VAL PRO THR CYS MET ILE PHE ILE PRO SEQRES 30 B 423 SER ILE ASN GLY ILE SER HIS ASN PRO ALA GLU ARG THR SEQRES 31 B 423 ASN ILE THR ASP LEU ALA GLU GLY VAL LYS THR LEU ALA SEQRES 32 B 423 LEU MET LEU TYR GLN LEU ALA TRP GLN LYS GLU GLY GLY SEQRES 33 B 423 SER HIS HIS HIS HIS HIS HIS HET ZN A 511 1 HET ZN A 512 1 HET SO4 A 513 5 HET ZN B 513 1 HET ZN B 514 1 HET SO4 B 515 5 HET 1AL B 516 12 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM 1AL ALLANTOATE ION HETSYN 1AL DIUREIDO-ACETATE FORMUL 3 ZN 4(ZN 2+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 9 1AL C4 H7 N4 O4 1- FORMUL 10 HOH *194(H2 O) HELIX 1 1 LEU A 3 PHE A 21 1 19 HELIX 2 2 SER A 35 SER A 52 1 18 HELIX 3 3 GLY A 95 GLY A 114 1 20 HELIX 4 4 PHE A 137 PHE A 144 1 8 HELIX 5 5 ASN A 148 VAL A 152 5 5 HELIX 6 6 SER A 162 CYS A 170 1 9 HELIX 7 7 CYS A 197 ASN A 202 1 6 HELIX 8 8 PRO A 233 ARG A 237 5 5 HELIX 9 9 ASP A 239 GLY A 259 1 21 HELIX 10 10 ASP A 293 ASP A 316 1 24 HELIX 11 11 ASN A 333 GLU A 347 1 15 HELIX 12 12 ASP A 361 ALA A 366 1 6 HELIX 13 13 SER A 378 ILE A 382 5 5 HELIX 14 14 ASN A 391 TRP A 411 1 21 HELIX 15 15 LEU B 3 PHE B 21 1 19 HELIX 16 16 SER B 35 SER B 52 1 18 HELIX 17 17 GLY B 95 GLY B 114 1 20 HELIX 18 18 PHE B 137 PHE B 144 1 8 HELIX 19 19 ASN B 148 VAL B 152 5 5 HELIX 20 20 SER B 162 CYS B 170 1 9 HELIX 21 21 CYS B 197 ASN B 202 1 6 HELIX 22 22 PRO B 233 ARG B 237 5 5 HELIX 23 23 ASP B 239 GLY B 259 1 21 HELIX 24 24 ASP B 293 ASP B 316 1 24 HELIX 25 25 ASN B 333 LYS B 348 1 16 HELIX 26 26 ASP B 361 ALA B 366 1 6 HELIX 27 27 SER B 378 ILE B 382 5 5 HELIX 28 28 ASN B 391 TRP B 411 1 21 SHEET 1 A 8 GLU A 55 PHE A 58 0 SHEET 2 A 8 LEU A 64 LEU A 68 -1 O ARG A 67 N GLU A 55 SHEET 3 A 8 ARG A 118 MET A 125 -1 O VAL A 120 N LEU A 68 SHEET 4 A 8 TYR A 73 HIS A 83 1 N VAL A 78 O THR A 119 SHEET 5 A 8 ILE A 185 ILE A 193 1 O ALA A 187 N LEU A 79 SHEET 6 A 8 THR A 371 ILE A 376 1 O ILE A 374 N HIS A 192 SHEET 7 A 8 ILE A 206 ILE A 212 -1 N GLY A 207 O PHE A 375 SHEET 8 A 8 VAL A 330 PRO A 331 -1 O VAL A 330 N ILE A 212 SHEET 1 B 8 GLU A 55 PHE A 58 0 SHEET 2 B 8 LEU A 64 LEU A 68 -1 O ARG A 67 N GLU A 55 SHEET 3 B 8 ARG A 118 MET A 125 -1 O VAL A 120 N LEU A 68 SHEET 4 B 8 TYR A 73 HIS A 83 1 N VAL A 78 O THR A 119 SHEET 5 B 8 ILE A 185 ILE A 193 1 O ALA A 187 N LEU A 79 SHEET 6 B 8 THR A 371 ILE A 376 1 O ILE A 374 N HIS A 192 SHEET 7 B 8 ILE A 206 ILE A 212 -1 N GLY A 207 O PHE A 375 SHEET 8 B 8 TYR A 351 SER A 356 1 O SER A 356 N ALA A 211 SHEET 1 C 3 VAL A 263 THR A 265 0 SHEET 2 C 3 LYS A 282 HIS A 291 -1 O ASP A 288 N THR A 265 SHEET 3 C 3 VAL A 269 ARG A 272 -1 N GLU A 270 O THR A 284 SHEET 1 D 4 VAL A 263 THR A 265 0 SHEET 2 D 4 LYS A 282 HIS A 291 -1 O ASP A 288 N THR A 265 SHEET 3 D 4 GLY A 214 ASN A 223 -1 N GLY A 214 O HIS A 291 SHEET 4 D 4 GLY A 318 GLU A 327 -1 O GLY A 318 N ASN A 223 SHEET 1 E 2 ASN A 227 HIS A 228 0 SHEET 2 E 2 VAL A 278 VAL A 279 -1 O VAL A 279 N ASN A 227 SHEET 1 F 8 GLU B 55 PHE B 58 0 SHEET 2 F 8 LEU B 64 LEU B 68 -1 O ARG B 67 N GLU B 55 SHEET 3 F 8 ARG B 118 MET B 125 -1 O ALA B 124 N LEU B 64 SHEET 4 F 8 TYR B 73 HIS B 83 1 N VAL B 78 O GLU B 121 SHEET 5 F 8 ILE B 185 HIS B 192 1 O ALA B 187 N LEU B 79 SHEET 6 F 8 THR B 371 PHE B 375 1 O ILE B 374 N GLU B 190 SHEET 7 F 8 ILE B 206 ILE B 212 -1 N GLY B 207 O PHE B 375 SHEET 8 F 8 VAL B 330 PRO B 331 -1 O VAL B 330 N ILE B 212 SHEET 1 G 8 GLU B 55 PHE B 58 0 SHEET 2 G 8 LEU B 64 LEU B 68 -1 O ARG B 67 N GLU B 55 SHEET 3 G 8 ARG B 118 MET B 125 -1 O ALA B 124 N LEU B 64 SHEET 4 G 8 TYR B 73 HIS B 83 1 N VAL B 78 O GLU B 121 SHEET 5 G 8 ILE B 185 HIS B 192 1 O ALA B 187 N LEU B 79 SHEET 6 G 8 THR B 371 PHE B 375 1 O ILE B 374 N GLU B 190 SHEET 7 G 8 ILE B 206 ILE B 212 -1 N GLY B 207 O PHE B 375 SHEET 8 G 8 TYR B 351 SER B 356 1 O ARG B 352 N VAL B 208 SHEET 1 H 3 VAL B 263 THR B 265 0 SHEET 2 H 3 LYS B 282 HIS B 291 -1 O ASP B 288 N THR B 265 SHEET 3 H 3 VAL B 269 ARG B 272 -1 N GLU B 270 O THR B 284 SHEET 1 I 4 VAL B 263 THR B 265 0 SHEET 2 I 4 LYS B 282 HIS B 291 -1 O ASP B 288 N THR B 265 SHEET 3 I 4 GLY B 214 ASN B 223 -1 N VAL B 220 O PHE B 285 SHEET 4 I 4 GLY B 318 GLU B 327 -1 O ASP B 322 N THR B 219 SHEET 1 J 2 ASN B 227 HIS B 228 0 SHEET 2 J 2 VAL B 278 VAL B 279 -1 O VAL B 279 N ASN B 227 LINK NE2 HIS A 83 ZN ZN A 511 1555 1555 2.26 LINK OD2 ASP A 94 ZN ZN A 511 1555 1555 2.24 LINK OD1 ASP A 94 ZN ZN A 512 1555 1555 2.07 LINK OE2 GLU A 129 ZN ZN A 512 1555 1555 2.40 LINK NE2 HIS A 192 ZN ZN A 511 1555 1555 2.32 LINK NE2 HIS A 384 ZN ZN A 512 1555 1555 2.27 LINK ZN ZN A 511 O HOH A 629 1555 1555 2.31 LINK ZN ZN A 511 O HOH A 631 1555 1555 2.55 LINK ZN ZN A 512 O HOH A 631 1555 1555 2.48 LINK NE2 HIS B 83 ZN ZN B 513 1555 1555 2.19 LINK OD1 ASP B 94 ZN ZN B 513 1555 1555 2.07 LINK OD2 ASP B 94 ZN ZN B 514 1555 1555 2.18 LINK OE2 GLU B 129 ZN ZN B 514 1555 1555 2.60 LINK OE1 GLU B 129 ZN ZN B 514 1555 1555 2.44 LINK NE2 HIS B 192 ZN ZN B 513 1555 1555 2.35 LINK NE2 HIS B 384 ZN ZN B 514 1555 1555 2.22 LINK ZN ZN B 513 O HOH B 590 1555 1555 2.26 LINK ZN ZN B 513 O HOH B 591 1555 1555 2.61 CISPEP 1 ASP A 260 PRO A 261 0 0.29 CISPEP 2 ARG A 272 PRO A 273 0 0.21 CISPEP 3 ASP B 260 PRO B 261 0 0.10 CISPEP 4 ARG B 272 PRO B 273 0 0.14 SITE 1 AC1 6 HIS A 83 ASP A 94 HIS A 192 ZN A 512 SITE 2 AC1 6 HOH A 629 HOH A 631 SITE 1 AC2 5 ASP A 94 GLU A 129 HIS A 384 ZN A 511 SITE 2 AC2 5 HOH A 631 SITE 1 AC3 6 HIS B 83 ASP B 94 HIS B 192 ZN B 514 SITE 2 AC3 6 HOH B 590 HOH B 591 SITE 1 AC4 6 ASP B 94 GLU B 129 GLN B 195 HIS B 384 SITE 2 AC4 6 ZN B 513 HOH B 591 SITE 1 AC5 7 GLN A 215 ARG A 217 ARG A 290 ALA A 358 SITE 2 AC5 7 GLY A 359 HIS B 228 1AL B 516 SITE 1 AC6 6 GLN B 215 ARG B 217 ARG B 290 ALA B 358 SITE 2 AC6 6 GLY B 359 HOH B 534 SITE 1 AC7 8 ARG A 217 ARG A 290 HIS A 384 SO4 A 513 SITE 2 AC7 8 HIS B 228 ASN B 277 VAL B 278 HOH B 552 CRYST1 95.532 186.579 49.218 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010468 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005360 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020318 0.00000