HEADER TRANSFERASE 08-MAR-05 1Z2O TITLE INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE IN COMPLEX WITH TITLE 2 MG2+/ADP/INS(1,3,4,6)P4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: INOSITOL PHOSPHATE KINASE, ATP-GRASP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTAMOEBA HISTOLYTICA; SOURCE 3 ORGANISM_TAXID: 294381; SOURCE 4 STRAIN: HM-1:IMSS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P3 KEYWDS INOSITOL PHOSPHATE KINASE, ATP-GRASP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.J.MILLER,M.P.WILSON,P.W.MAJERUS,J.H.HURLEY REVDAT 5 14-FEB-24 1Z2O 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1Z2O 1 VERSN REVDAT 3 24-FEB-09 1Z2O 1 VERSN REVDAT 2 26-APR-05 1Z2O 1 SEQADV REVDAT 1 19-APR-05 1Z2O 0 JRNL AUTH G.J.MILLER,M.P.WILSON,P.W.MAJERUS,J.H.HURLEY JRNL TITL SPECIFICITY DETERMINANTS IN INOSITOL POLYPHOSPHATE JRNL TITL 2 SYNTHESIS: CRYSTAL STRUCTURE OF INOSITOL 1,3,4-TRISPHOSPHATE JRNL TITL 3 5/6-KINASE. JRNL REF MOL.CELL V. 18 201 2005 JRNL REFN ISSN 1097-2765 JRNL PMID 15837423 JRNL DOI 10.1016/J.MOLCEL.2005.03.016 REMARK 2 REMARK 2 RESOLUTION. 1.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 86579 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2504 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 538 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z2O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : NULL; NULL; NULL REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; NULL; NULL REMARK 200 RADIATION SOURCE : ALS; NULL; NULL REMARK 200 BEAMLINE : 8.2.1; NULL; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : NULL; NULL; NULL REMARK 200 MONOCHROMATOR : NULL; NULL; NULL REMARK 200 OPTICS : NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL; NULL; NULL REMARK 200 DETECTOR MANUFACTURER : NULL; NULL; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86579 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.240 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1 M BIS-TRIS, 10 MM REMARK 280 DTT, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.14700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY X -4 REMARK 465 PRO X -3 REMARK 465 LEU X -2 REMARK 465 GLY X -1 REMARK 465 SER X 0 REMARK 465 MET X 1 REMARK 465 THR X 2 REMARK 465 THR X 3 REMARK 465 LYS X 4 REMARK 465 VAL X 316 REMARK 465 ALA X 317 REMARK 465 LYS X 318 REMARK 465 ILE X 319 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU X 83 C SER X 84 N 0.177 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE X 81 O - C - N ANGL. DEV. = -10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER X 194 -111.01 -141.87 REMARK 500 PHE X 237 15.66 59.07 REMARK 500 PHE X 293 69.56 36.64 REMARK 500 PRO X 294 -165.00 -76.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X1295 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP X 275 OD2 REMARK 620 2 ASP X 289 OD2 87.8 REMARK 620 3 ADP X 871 O3B 171.2 83.4 REMARK 620 4 ADP X 871 O2A 100.7 89.7 80.3 REMARK 620 5 I4P X2699 O32 99.2 90.3 79.9 160.1 REMARK 620 6 HOH X2700 O 89.7 177.0 99.1 89.2 91.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X1296 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP X 289 OD1 REMARK 620 2 ASP X 289 OD2 56.9 REMARK 620 3 ASN X 291 OD1 89.9 90.0 REMARK 620 4 ADP X 871 O2B 90.8 87.2 176.1 REMARK 620 5 HOH X2702 O 154.4 97.7 86.6 91.1 REMARK 620 6 HOH X2703 O 89.3 146.2 89.5 94.3 116.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP X 871 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE I4P X 2699 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z2N RELATED DB: PDB REMARK 900 INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE COMPLEXED MG2+/ADP REMARK 900 RELATED ID: 1Z2P RELATED DB: PDB REMARK 900 INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE IN COMPLEX WITH MG2+/AMP- REMARK 900 PCP/INS(1,3,4)P3 DBREF 1Z2O X 1 319 UNP Q9XYQ1 Q9XYQ1_ENTHI 1 319 SEQADV 1Z2O GLY X -4 UNP Q9XYQ1 CLONING ARTIFACT SEQADV 1Z2O PRO X -3 UNP Q9XYQ1 CLONING ARTIFACT SEQADV 1Z2O LEU X -2 UNP Q9XYQ1 CLONING ARTIFACT SEQADV 1Z2O GLY X -1 UNP Q9XYQ1 CLONING ARTIFACT SEQADV 1Z2O SER X 0 UNP Q9XYQ1 CLONING ARTIFACT SEQRES 1 X 324 GLY PRO LEU GLY SER MET THR THR LYS GLN THR VAL SER SEQRES 2 X 324 LEU PHE ILE TRP LEU PRO GLU SER LYS GLN LYS THR LEU SEQRES 3 X 324 PHE ILE SER THR LYS ASN HIS THR GLN PHE GLU LEU ASN SEQRES 4 X 324 ASN ILE ILE PHE ASP VAL THR LEU SER THR GLU LEU PRO SEQRES 5 X 324 ASP LYS GLU PRO ASN ALA ILE ILE THR LYS ARG THR HIS SEQRES 6 X 324 PRO VAL GLY LYS MET ALA ASP GLU MET ARG LYS TYR GLU SEQRES 7 X 324 LYS ASP HIS PRO LYS VAL LEU PHE LEU GLU SER SER ALA SEQRES 8 X 324 ILE HIS ASP MET MET SER SER ARG GLU GLU ILE ASN ALA SEQRES 9 X 324 LEU LEU ILE LYS ASN ASN ILE PRO ILE PRO ASN SER PHE SEQRES 10 X 324 SER VAL LYS SER LYS GLU GLU VAL ILE GLN LEU LEU GLN SEQRES 11 X 324 SER LYS GLN LEU ILE LEU PRO PHE ILE VAL LYS PRO GLU SEQRES 12 X 324 ASN ALA GLN GLY THR PHE ASN ALA HIS GLN MET LYS ILE SEQRES 13 X 324 VAL LEU GLU GLN GLU GLY ILE ASP ASP ILE HIS PHE PRO SEQRES 14 X 324 CYS LEU CYS GLN HIS TYR ILE ASN HIS ASN ASN LYS ILE SEQRES 15 X 324 VAL LYS VAL PHE CYS ILE GLY ASN THR LEU LYS TRP GLN SEQRES 16 X 324 THR ARG THR SER LEU PRO ASN VAL HIS ARG CYS GLY ILE SEQRES 17 X 324 LYS SER VAL ASP PHE ASN ASN GLN HIS LEU GLU ASP ILE SEQRES 18 X 324 LEU SER TRP PRO GLU GLY VAL ILE ASP LYS GLN ASP ILE SEQRES 19 X 324 ILE GLU ASN SER ALA ASN ARG PHE GLY SER LYS ILE LEU SEQRES 20 X 324 GLU ASP PRO ILE LEU LEU ASN LEU THR SER GLU ALA GLU SEQRES 21 X 324 MET ARG ASP LEU ALA TYR LYS VAL ARG CYS ALA LEU GLY SEQRES 22 X 324 VAL GLN LEU CYS GLY ILE ASP PHE ILE LYS GLU ASN GLU SEQRES 23 X 324 GLN GLY ASN PRO LEU VAL VAL ASP VAL ASN VAL PHE PRO SEQRES 24 X 324 SER TYR GLY GLY LYS VAL ASP PHE ASP TRP PHE VAL GLU SEQRES 25 X 324 LYS VAL ALA LEU CYS TYR THR GLU VAL ALA LYS ILE HET MG X1295 1 HET MG X1296 1 HET ADP X 871 27 HET I4P X2699 28 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM I4P (1S,3R,4R,6S)-1,3,4,6-TETRAPKISPHOSPHATE FORMUL 2 MG 2(MG 2+) FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 I4P C6 H16 O18 P4 FORMUL 6 HOH *538(H2 O) HELIX 1 1 PRO X 14 PHE X 22 1 9 HELIX 2 2 GLY X 63 HIS X 76 1 14 HELIX 3 3 SER X 84 SER X 92 1 9 HELIX 4 4 SER X 93 ASN X 104 1 12 HELIX 5 5 SER X 116 SER X 126 1 11 HELIX 6 6 THR X 143 ALA X 146 5 4 HELIX 7 7 GLU X 154 ASP X 159 5 6 HELIX 8 8 HIS X 212 TRP X 219 5 8 HELIX 9 9 ASP X 225 ALA X 234 1 10 HELIX 10 10 SER X 252 GLY X 268 1 17 HELIX 11 11 LYS X 278 GLN X 282 5 5 HELIX 12 12 ASP X 301 GLU X 315 1 15 SHEET 1 A 5 HIS X 28 LEU X 33 0 SHEET 2 A 5 ILE X 36 SER X 43 -1 O PHE X 38 N PHE X 31 SHEET 3 A 5 THR X 6 TRP X 12 1 N ILE X 11 O THR X 41 SHEET 4 A 5 ALA X 53 THR X 56 1 O ILE X 55 N PHE X 10 SHEET 5 A 5 LEU X 80 LEU X 82 1 O LEU X 82 N ILE X 54 SHEET 1 B 5 SER X 111 VAL X 114 0 SHEET 2 B 5 CYS X 165 HIS X 169 -1 O CYS X 167 N PHE X 112 SHEET 3 B 5 PHE X 133 PRO X 137 -1 N LYS X 136 O LEU X 166 SHEET 4 B 5 GLN X 148 VAL X 152 -1 O LYS X 150 N VAL X 135 SHEET 5 B 5 SER X 205 ASN X 209 -1 O PHE X 208 N MET X 149 SHEET 1 C 4 THR X 186 ARG X 192 0 SHEET 2 C 4 ILE X 177 ILE X 183 -1 N PHE X 181 O LYS X 188 SHEET 3 C 4 LEU X 271 ILE X 277 -1 O CYS X 272 N CYS X 182 SHEET 4 C 4 LEU X 286 VAL X 292 -1 O ASN X 291 N GLY X 273 LINK OD2 ASP X 275 MG MG X1295 1555 1555 2.25 LINK OD2 ASP X 289 MG MG X1295 1555 1555 2.27 LINK OD1 ASP X 289 MG MG X1296 1555 1555 2.36 LINK OD2 ASP X 289 MG MG X1296 1555 1555 2.24 LINK OD1 ASN X 291 MG MG X1296 1555 1555 2.08 LINK O3B ADP X 871 MG MG X1295 1555 1555 2.35 LINK O2A ADP X 871 MG MG X1295 1555 1555 2.10 LINK O2B ADP X 871 MG MG X1296 1555 1555 1.99 LINK MG MG X1295 O32 I4P X2699 1555 1555 2.10 LINK MG MG X1295 O HOH X2700 1555 1555 2.19 LINK MG MG X1296 O HOH X2702 1555 1555 1.97 LINK MG MG X1296 O HOH X2703 1555 1555 2.00 CISPEP 1 LEU X 82 GLU X 83 0 7.49 CISPEP 2 LEU X 131 PRO X 132 0 -9.39 CISPEP 3 PHE X 163 PRO X 164 0 -1.42 SITE 1 AC1 5 ASP X 275 ASP X 289 ADP X 871 I4P X2699 SITE 2 AC1 5 HOH X2700 SITE 1 AC2 5 ASP X 289 ASN X 291 ADP X 871 HOH X2702 SITE 2 AC2 5 HOH X2703 SITE 1 AC3 28 ARG X 94 PRO X 109 LYS X 136 HIS X 147 SITE 2 AC3 28 MET X 149 GLN X 168 HIS X 169 TYR X 170 SITE 3 AC3 28 ILE X 171 HIS X 173 ILE X 177 SER X 194 SITE 4 AC3 28 LEU X 195 ASN X 210 ASP X 275 VAL X 288 SITE 5 AC3 28 ASP X 289 MG X1295 MG X1296 I4P X2699 SITE 6 AC3 28 HOH X2700 HOH X2702 HOH X2703 HOH X2714 SITE 7 AC3 28 HOH X2770 HOH X2919 HOH X3186 HOH X3205 SITE 1 AC4 33 LYS X 17 THR X 20 LYS X 57 GLN X 141 SITE 2 AC4 33 GLY X 142 HIS X 147 LYS X 179 PHE X 181 SITE 3 AC4 33 ASP X 275 ASP X 289 ASN X 291 PRO X 294 SITE 4 AC4 33 SER X 295 TYR X 296 ADP X 871 MG X1295 SITE 5 AC4 33 HOH X2700 HOH X2702 HOH X2715 HOH X2781 SITE 6 AC4 33 HOH X2840 HOH X2856 HOH X2919 HOH X2922 SITE 7 AC4 33 HOH X2927 HOH X2930 HOH X2980 HOH X3044 SITE 8 AC4 33 HOH X3074 HOH X3119 HOH X3165 HOH X3172 SITE 9 AC4 33 HOH X3201 CRYST1 38.189 94.294 47.351 90.00 110.65 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026186 0.000000 0.009869 0.00000 SCALE2 0.000000 0.010605 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022569 0.00000