HEADER RNA 10-MAR-05 1Z31 TITLE THE STRUCTURE OF AN ENZYME-ACTIVATING FRAGMENT OF HUMAN TELOMERASE RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN TELOMERASE PJ6 HAIRPIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HUMAN TELOMERASE RNA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: T7 RNA POLYMERASE IN VITRO TRANSCRIPTION FROM DNA SOURCE 4 OLIGONUCLEOTIDE TEMPLATE KEYWDS ASYMMETRIC INTERNAL BULGE, RESIDUAL DIPOLAR COUPLINGS, TELOMERASE KEYWDS 2 PROTEIN BINDING SITE, RNA EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR T.C.LEEPER,G.VARANI REVDAT 3 02-MAR-22 1Z31 1 REMARK REVDAT 2 24-FEB-09 1Z31 1 VERSN REVDAT 1 22-MAR-05 1Z31 0 JRNL AUTH T.C.LEEPER,G.VARANI JRNL TITL THE STRUCTURE OF AN ENZYME-ACTIVATING FRAGMENT OF HUMAN JRNL TITL 2 TELOMERASE RNA. JRNL REF RNA V. 11 394 2005 JRNL REFN ISSN 1355-8382 JRNL PMID 15703438 JRNL DOI 10.1261/RNA.7222505 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.0, X-PLOR 2.9.4 REMARK 3 AUTHORS : BRUNGER AND CLORE (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 726 TOTAL RESTRAINTS, 429 NOE-DERIVED REMARK 3 RESTRAINTS, 159 DIHEDRAL RESTRAINTS, 65 RESIDUAL DIPOLAR REMARK 3 COUPLING RESTRAINTS, 62 HYDROGEN BONDS, AND 11 WEAK PLANARITY REMARK 3 RESTRAINTS. REMARK 4 REMARK 4 1Z31 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032234. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 277 REMARK 210 PH : 6; 6 REMARK 210 IONIC STRENGTH : 10 MM; 10 MM REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : PJ6 1 MM UNLABELED; 10 MM SODIUM REMARK 210 PHOSHATE, PH 6.0, 100% D2O; PJ6 REMARK 210 1 MM UNLABELED; 10 MM SODIUM REMARK 210 PHOSHATE, PH 6.0, 90% H2O, 10% REMARK 210 D2O; PJ6 0.6 MM U-15N,13C; 10 MM REMARK 210 SODIUM PHOSHATE, PH 6.0, 100% REMARK 210 D2O; PJ6 0.6 MM U-15N,13C; 10 MM REMARK 210 SODIUM PHOSHATE, PH 6.0, 90% H2O, REMARK 210 10% D2O; PJ6 0.6 MM U-15N,13C; REMARK 210 10 MM SODIUM SUCCINATE, PH 6.0, REMARK 210 18 MG/ML PF1 BACTERIAPHAGE, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; 2D NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; IPAP-HSQC; HCP REMARK 210 TRIPLE RESONANCE; 3D 13C-31P REMARK 210 HETCOR; 3D 13C TOCSY-HSQC; HNN- REMARK 210 COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, X-PLOR 2.9.4, REMARK 210 SPARKY 3.110 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HO2' A A 289 O5' C A 290 1.35 REMARK 500 H1' C A 262 OP2 G A 263 1.37 REMARK 500 HO2' U A 291 O4' G A 292 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 C A 270 C4' C A 270 C3' -0.088 REMARK 500 2 C A 270 C4' C A 270 C3' -0.087 REMARK 500 3 C A 270 C4' C A 270 C3' -0.087 REMARK 500 4 C A 270 C4' C A 270 C3' -0.087 REMARK 500 5 C A 270 C4' C A 270 C3' -0.087 REMARK 500 7 C A 270 C4' C A 270 C3' -0.087 REMARK 500 8 C A 270 C4' C A 270 C3' -0.089 REMARK 500 9 C A 270 C4' C A 270 C3' -0.086 REMARK 500 10 C A 270 C4' C A 270 C3' -0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 C A 294 C5' - C4' - C3' ANGL. DEV. = -8.6 DEGREES REMARK 500 2 C A 294 C5' - C4' - C3' ANGL. DEV. = -8.6 DEGREES REMARK 500 4 C A 294 C5' - C4' - C3' ANGL. DEV. = -8.4 DEGREES REMARK 500 8 C A 294 C5' - C4' - C3' ANGL. DEV. = -8.5 DEGREES REMARK 500 9 C A 294 C5' - C4' - C3' ANGL. DEV. = -8.5 DEGREES REMARK 500 10 U A 272 C5' - C4' - C3' ANGL. DEV. = -8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF 1Z31 A 257 299 PDB 1Z31 1Z31 257 299 SEQRES 1 A 32 G A G G U C G G C C C G A SEQRES 2 A 32 C U U C G G U C A C U G C SEQRES 3 A 32 C A C C U C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1