HEADER UNKNOWN FUNCTION 14-MAR-05 1Z40 TITLE AMA1 FROM PLASMODIUM FALCIPARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: APICAL MEMBRANE ANTIGEN 1 PRECURSOR; COMPND 3 CHAIN: A, E; COMPND 4 FRAGMENT: DOMAIN I & DOMAIN II; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: PLASMODIUM FALCIPARUM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEXHTB KEYWDS MALARIA VACCINE CANDIDATE, PAN OR APPLE DOMAINS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR T.BAI,M.BECKER,A.GUPTA,P.STRIKE,V.J.MURPHY,R.F.ANDERS,A.H.BATCHELOR REVDAT 5 14-FEB-18 1Z40 1 REMARK REVDAT 4 13-JUL-11 1Z40 1 VERSN REVDAT 3 24-FEB-09 1Z40 1 VERSN REVDAT 2 13-SEP-05 1Z40 1 JRNL REVDAT 1 16-AUG-05 1Z40 0 JRNL AUTH T.BAI,M.BECKER,A.GUPTA,P.STRIKE,V.J.MURPHY,R.F.ANDERS, JRNL AUTH 2 A.H.BATCHELOR JRNL TITL STRUCTURE OF AMA1 FROM PLASMODIUM FALCIPARUM REVEALS A JRNL TITL 2 CLUSTERING OF POLYMORPHISMS THAT SURROUND A CONSERVED JRNL TITL 3 HYDROPHOBIC POCKET JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 12736 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 16129835 JRNL DOI 10.1073/PNAS.0501808102 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 51869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2770 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3688 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 210 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 253 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.66000 REMARK 3 B22 (A**2) : 0.66000 REMARK 3 B33 (A**2) : -0.99000 REMARK 3 B12 (A**2) : 0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.857 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5013 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6802 ; 1.436 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 609 ; 6.360 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;39.430 ;25.469 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 824 ;14.885 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.910 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 719 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3875 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2190 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3381 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 315 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.247 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3175 ; 0.930 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4972 ; 1.441 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2119 ; 2.225 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1830 ; 3.404 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 438 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3350 13.2290 46.4080 REMARK 3 T TENSOR REMARK 3 T11: -0.2214 T22: -0.1121 REMARK 3 T33: -0.1719 T12: -0.1307 REMARK 3 T13: 0.0199 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 1.3840 L22: 3.1935 REMARK 3 L33: 3.1096 L12: 0.9707 REMARK 3 L13: 0.0500 L23: 1.7491 REMARK 3 S TENSOR REMARK 3 S11: -0.1525 S12: -0.0029 S13: -0.1546 REMARK 3 S21: -0.1545 S22: 0.0405 S23: -0.0554 REMARK 3 S31: 0.0623 S32: 0.0365 S33: 0.1119 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 108 E 438 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1890 11.5340 81.4020 REMARK 3 T TENSOR REMARK 3 T11: -0.2753 T22: 0.0308 REMARK 3 T33: -0.2079 T12: -0.0463 REMARK 3 T13: -0.0402 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 4.3892 L22: 1.3656 REMARK 3 L33: 3.3188 L12: 0.7430 REMARK 3 L13: -1.5274 L23: -1.0165 REMARK 3 S TENSOR REMARK 3 S11: -0.1002 S12: -0.2137 S13: 0.1117 REMARK 3 S21: 0.0096 S22: 0.0601 S23: -0.0253 REMARK 3 S31: -0.1034 S32: -0.0191 S33: 0.0401 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Z40 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54498 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 39.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 30.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30000 REMARK 200 FOR SHELL : 11.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MES, MANGANESE CHLORIDE, PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.38133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 142.76267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 103 REMARK 465 ASN A 104 REMARK 465 TYR A 105 REMARK 465 MET A 106 REMARK 465 GLY A 107 REMARK 465 GLY A 172 REMARK 465 ASN A 173 REMARK 465 GLN A 174 REMARK 465 TYR A 175 REMARK 465 LEU A 176 REMARK 465 ASN A 264 REMARK 465 LYS A 265 REMARK 465 ASP A 266 REMARK 465 GLU A 267 REMARK 465 SER A 268 REMARK 465 LYS A 269 REMARK 465 ARG A 270 REMARK 465 ASN A 271 REMARK 465 SER A 272 REMARK 465 MET A 273 REMARK 465 GLY A 383 REMARK 465 ALA A 384 REMARK 465 PHE A 385 REMARK 465 LYS A 386 REMARK 465 ALA A 387 REMARK 465 GLY E 103 REMARK 465 ASN E 104 REMARK 465 TYR E 105 REMARK 465 MET E 106 REMARK 465 GLY E 107 REMARK 465 GLY E 172 REMARK 465 ASN E 173 REMARK 465 GLN E 174 REMARK 465 TYR E 175 REMARK 465 LEU E 176 REMARK 465 GLY E 259 REMARK 465 PRO E 260 REMARK 465 ARG E 261 REMARK 465 TYR E 262 REMARK 465 CYS E 263 REMARK 465 ASN E 264 REMARK 465 LYS E 265 REMARK 465 ASP E 266 REMARK 465 GLU E 267 REMARK 465 SER E 268 REMARK 465 LYS E 269 REMARK 465 ARG E 270 REMARK 465 ASN E 271 REMARK 465 SER E 272 REMARK 465 THR E 382 REMARK 465 GLY E 383 REMARK 465 ALA E 384 REMARK 465 PHE E 385 REMARK 465 LYS E 386 REMARK 465 ALA E 387 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 LYS A 206 CE NZ REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 LYS A 243 CE NZ REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 262 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 352 CG CD OE1 NE2 REMARK 470 TYR A 353 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 355 CG CD OE1 NE2 REMARK 470 ASN A 371 CG OD1 ND2 REMARK 470 GLU A 438 O REMARK 470 LYS E 177 CG CD CE NZ REMARK 470 ASP E 178 CG OD1 OD2 REMARK 470 LYS E 203 CG CD CE NZ REMARK 470 LYS E 206 CE NZ REMARK 470 TYR E 207 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN E 258 CG OD1 ND2 REMARK 470 LYS E 300 CE NZ REMARK 470 GLN E 352 CG CD OE1 NE2 REMARK 470 TYR E 353 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN E 355 CG CD OE1 NE2 REMARK 470 LYS E 370 CD CE NZ REMARK 470 ARG E 389 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG E 219 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 169 151.53 -49.19 REMARK 500 ASN A 257 85.20 -153.79 REMARK 500 ARG A 261 -93.47 -42.88 REMARK 500 ARG A 304 -62.91 -141.93 REMARK 500 GLN A 352 42.32 -63.27 REMARK 500 GLU A 354 -169.64 -121.30 REMARK 500 GLN A 355 -95.53 -54.26 REMARK 500 LYS A 368 -36.22 -133.93 REMARK 500 ALA A 372 18.37 89.72 REMARK 500 SER E 146 5.41 -151.61 REMARK 500 GLU E 213 -61.14 -25.73 REMARK 500 PHE E 274 98.47 34.45 REMARK 500 ARG E 304 -66.51 -142.40 REMARK 500 TYR E 353 148.86 -177.32 REMARK 500 ASN E 371 93.08 -47.23 REMARK 500 ASN E 421 95.83 -67.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1 DBREF 1Z40 A 104 438 UNP Q7KQK5 Q7KQK5_PLAF7 104 438 DBREF 1Z40 E 104 438 UNP Q7KQK5 Q7KQK5_PLAF7 104 438 SEQADV 1Z40 GLY A 103 UNP Q7KQK5 CLONING ARTIFACT SEQADV 1Z40 GLY E 103 UNP Q7KQK5 CLONING ARTIFACT SEQRES 1 A 336 GLY ASN TYR MET GLY ASN PRO TRP THR GLU TYR MET ALA SEQRES 2 A 336 LYS TYR ASP ILE GLU GLU VAL HIS GLY SER GLY ILE ARG SEQRES 3 A 336 VAL ASP LEU GLY GLU ASP ALA GLU VAL ALA GLY THR GLN SEQRES 4 A 336 TYR ARG LEU PRO SER GLY LYS CYS PRO VAL PHE GLY LYS SEQRES 5 A 336 GLY ILE ILE ILE GLU ASN SER ASN THR THR PHE LEU THR SEQRES 6 A 336 PRO VAL ALA THR GLY ASN GLN TYR LEU LYS ASP GLY GLY SEQRES 7 A 336 PHE ALA PHE PRO PRO THR GLU PRO LEU MET SER PRO MET SEQRES 8 A 336 THR LEU ASP GLU MET ARG HIS PHE TYR LYS ASP ASN LYS SEQRES 9 A 336 TYR VAL LYS ASN LEU ASP GLU LEU THR LEU CYS SER ARG SEQRES 10 A 336 HIS ALA GLY ASN MET ILE PRO ASP ASN ASP LYS ASN SER SEQRES 11 A 336 ASN TYR LYS TYR PRO ALA VAL TYR ASP ASP LYS ASP LYS SEQRES 12 A 336 LYS CYS HIS ILE LEU TYR ILE ALA ALA GLN GLU ASN ASN SEQRES 13 A 336 GLY PRO ARG TYR CYS ASN LYS ASP GLU SER LYS ARG ASN SEQRES 14 A 336 SER MET PHE CYS PHE ARG PRO ALA LYS ASP ILE SER PHE SEQRES 15 A 336 GLN ASN TYR THR TYR LEU SER LYS ASN VAL VAL ASP ASN SEQRES 16 A 336 TRP GLU LYS VAL CYS PRO ARG LYS ASN LEU GLN ASN ALA SEQRES 17 A 336 LYS PHE GLY LEU TRP VAL ASP GLY ASN CYS GLU ASP ILE SEQRES 18 A 336 PRO HIS VAL ASN GLU PHE PRO ALA ILE ASP LEU PHE GLU SEQRES 19 A 336 CYS ASN LYS LEU VAL PHE GLU LEU SER ALA SER ASP GLN SEQRES 20 A 336 PRO LYS GLN TYR GLU GLN HIS LEU THR ASP TYR GLU LYS SEQRES 21 A 336 ILE LYS GLU GLY PHE LYS ASN LYS ASN ALA SER MET ILE SEQRES 22 A 336 LYS SER ALA PHE LEU PRO THR GLY ALA PHE LYS ALA ASP SEQRES 23 A 336 ARG TYR LYS SER HIS GLY LYS GLY TYR ASN TRP GLY ASN SEQRES 24 A 336 TYR ASN THR GLU THR GLN LYS CYS GLU ILE PHE ASN VAL SEQRES 25 A 336 LYS PRO THR CYS LEU ILE ASN ASN SER SER TYR ILE ALA SEQRES 26 A 336 THR THR ALA LEU SER HIS PRO ILE GLU VAL GLU SEQRES 1 E 336 GLY ASN TYR MET GLY ASN PRO TRP THR GLU TYR MET ALA SEQRES 2 E 336 LYS TYR ASP ILE GLU GLU VAL HIS GLY SER GLY ILE ARG SEQRES 3 E 336 VAL ASP LEU GLY GLU ASP ALA GLU VAL ALA GLY THR GLN SEQRES 4 E 336 TYR ARG LEU PRO SER GLY LYS CYS PRO VAL PHE GLY LYS SEQRES 5 E 336 GLY ILE ILE ILE GLU ASN SER ASN THR THR PHE LEU THR SEQRES 6 E 336 PRO VAL ALA THR GLY ASN GLN TYR LEU LYS ASP GLY GLY SEQRES 7 E 336 PHE ALA PHE PRO PRO THR GLU PRO LEU MET SER PRO MET SEQRES 8 E 336 THR LEU ASP GLU MET ARG HIS PHE TYR LYS ASP ASN LYS SEQRES 9 E 336 TYR VAL LYS ASN LEU ASP GLU LEU THR LEU CYS SER ARG SEQRES 10 E 336 HIS ALA GLY ASN MET ILE PRO ASP ASN ASP LYS ASN SER SEQRES 11 E 336 ASN TYR LYS TYR PRO ALA VAL TYR ASP ASP LYS ASP LYS SEQRES 12 E 336 LYS CYS HIS ILE LEU TYR ILE ALA ALA GLN GLU ASN ASN SEQRES 13 E 336 GLY PRO ARG TYR CYS ASN LYS ASP GLU SER LYS ARG ASN SEQRES 14 E 336 SER MET PHE CYS PHE ARG PRO ALA LYS ASP ILE SER PHE SEQRES 15 E 336 GLN ASN TYR THR TYR LEU SER LYS ASN VAL VAL ASP ASN SEQRES 16 E 336 TRP GLU LYS VAL CYS PRO ARG LYS ASN LEU GLN ASN ALA SEQRES 17 E 336 LYS PHE GLY LEU TRP VAL ASP GLY ASN CYS GLU ASP ILE SEQRES 18 E 336 PRO HIS VAL ASN GLU PHE PRO ALA ILE ASP LEU PHE GLU SEQRES 19 E 336 CYS ASN LYS LEU VAL PHE GLU LEU SER ALA SER ASP GLN SEQRES 20 E 336 PRO LYS GLN TYR GLU GLN HIS LEU THR ASP TYR GLU LYS SEQRES 21 E 336 ILE LYS GLU GLY PHE LYS ASN LYS ASN ALA SER MET ILE SEQRES 22 E 336 LYS SER ALA PHE LEU PRO THR GLY ALA PHE LYS ALA ASP SEQRES 23 E 336 ARG TYR LYS SER HIS GLY LYS GLY TYR ASN TRP GLY ASN SEQRES 24 E 336 TYR ASN THR GLU THR GLN LYS CYS GLU ILE PHE ASN VAL SEQRES 25 E 336 LYS PRO THR CYS LEU ILE ASN ASN SER SER TYR ILE ALA SEQRES 26 E 336 THR THR ALA LEU SER HIS PRO ILE GLU VAL GLU HET CL A 1 1 HETNAM CL CHLORIDE ION FORMUL 3 CL CL 1- FORMUL 4 HOH *253(H2 O) HELIX 1 1 TRP A 110 ALA A 115 1 6 HELIX 2 2 ASP A 118 HIS A 123 1 6 HELIX 3 3 LEU A 195 TYR A 202 1 8 HELIX 4 4 ASP A 212 ASN A 223 1 12 HELIX 5 5 ILE A 282 GLN A 285 5 4 HELIX 6 6 ASN A 297 CYS A 302 1 6 HELIX 7 7 ASP A 333 SER A 345 1 13 HELIX 8 8 THR A 358 GLU A 365 1 8 HELIX 9 9 TRP E 110 ALA E 115 1 6 HELIX 10 10 ASP E 118 HIS E 123 1 6 HELIX 11 11 LEU E 195 TYR E 202 1 8 HELIX 12 12 ASP E 212 GLY E 222 1 11 HELIX 13 13 ILE E 282 GLN E 285 5 4 HELIX 14 14 ASN E 297 CYS E 302 1 6 HELIX 15 15 ASP E 333 SER E 345 1 13 HELIX 16 16 THR E 358 GLY E 366 1 9 SHEET 1 A 2 GLU A 133 VAL A 137 0 SHEET 2 A 2 THR A 140 LEU A 144 -1 O TYR A 142 N ALA A 135 SHEET 1 B 5 VAL A 151 PHE A 152 0 SHEET 2 B 5 TYR A 287 LEU A 290 -1 O TYR A 289 N VAL A 151 SHEET 3 B 5 ALA A 238 ASP A 241 -1 N ALA A 238 O LEU A 290 SHEET 4 B 5 LYS A 246 ILE A 249 -1 O HIS A 248 N VAL A 239 SHEET 5 B 5 MET A 193 THR A 194 -1 N MET A 193 O CYS A 247 SHEET 1 C 2 LYS A 154 ILE A 158 0 SHEET 2 C 2 PHE A 276 LYS A 280 -1 O ARG A 277 N ILE A 157 SHEET 1 D 6 ASN A 319 ASP A 322 0 SHEET 2 D 6 LEU A 307 VAL A 316 -1 N LEU A 314 O GLU A 321 SHEET 3 D 6 CYS A 418 THR A 429 -1 O ILE A 420 N LYS A 311 SHEET 4 D 6 TRP A 399 ASN A 403 -1 N TYR A 402 O ILE A 426 SHEET 5 D 6 LYS A 408 PHE A 412 -1 O LYS A 408 N ASN A 403 SHEET 6 D 6 ASN A 327 PRO A 330 -1 N ASN A 327 O ILE A 411 SHEET 1 E 2 GLU E 133 VAL E 137 0 SHEET 2 E 2 THR E 140 LEU E 144 -1 O TYR E 142 N ALA E 135 SHEET 1 F 5 VAL E 151 PHE E 152 0 SHEET 2 F 5 TYR E 287 LEU E 290 -1 O TYR E 289 N VAL E 151 SHEET 3 F 5 ALA E 238 ASP E 241 -1 N ALA E 238 O LEU E 290 SHEET 4 F 5 LYS E 246 ILE E 249 -1 O HIS E 248 N VAL E 239 SHEET 5 F 5 MET E 193 THR E 194 -1 N MET E 193 O CYS E 247 SHEET 1 G 2 LYS E 154 ILE E 158 0 SHEET 2 G 2 PHE E 276 LYS E 280 -1 O ARG E 277 N ILE E 157 SHEET 1 H 6 ASN E 319 ASP E 322 0 SHEET 2 H 6 ASN E 306 VAL E 316 -1 N VAL E 316 O ASN E 319 SHEET 3 H 6 CYS E 418 THR E 429 -1 O CYS E 418 N GLY E 313 SHEET 4 H 6 TRP E 399 ASN E 403 -1 N TYR E 402 O ILE E 426 SHEET 5 H 6 LYS E 408 PHE E 412 -1 O GLU E 410 N ASN E 401 SHEET 6 H 6 ASN E 327 PRO E 330 -1 N PHE E 329 O CYS E 409 SHEET 1 I 3 ASN E 319 ASP E 322 0 SHEET 2 I 3 ASN E 306 VAL E 316 -1 N VAL E 316 O ASN E 319 SHEET 3 I 3 VAL E 437 GLU E 438 1 O GLU E 438 N ASN E 306 SHEET 1 J 2 ASN E 369 LYS E 370 0 SHEET 2 J 2 SER E 373 MET E 374 -1 O SER E 373 N LYS E 370 SSBOND 1 CYS A 149 CYS A 302 1555 1555 2.08 SSBOND 2 CYS A 217 CYS A 247 1555 1555 2.08 SSBOND 3 CYS A 263 CYS A 275 1555 1555 2.03 SSBOND 4 CYS A 320 CYS A 418 1555 1555 2.01 SSBOND 5 CYS A 337 CYS A 409 1555 1555 2.09 SSBOND 6 CYS E 149 CYS E 302 1555 1555 2.10 SSBOND 7 CYS E 217 CYS E 247 1555 1555 2.07 SSBOND 8 CYS E 320 CYS E 418 1555 1555 2.02 SSBOND 9 CYS E 337 CYS E 409 1555 1555 2.06 CISPEP 1 GLU A 187 PRO A 188 0 -2.06 CISPEP 2 SER A 191 PRO A 192 0 -5.95 CISPEP 3 GLU E 187 PRO E 188 0 -2.03 CISPEP 4 SER E 191 PRO E 192 0 -3.85 SITE 1 AC1 3 ARG A 389 TYR A 390 LYS A 391 CRYST1 54.124 54.124 214.144 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018476 0.010667 0.000000 0.00000 SCALE2 0.000000 0.021334 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004670 0.00000