HEADER RNA 15-MAR-05 1Z43 TITLE CRYSTAL STRUCTURE OF 7S.S SRP RNA OF M. JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (101-MER); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 7S SRP RNA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS RNA, TETRA-LOOP EXPDTA X-RAY DIFFRACTION AUTHOR T.HAINZL,S.HUANG,A.E.SAUER-ERIKSSON REVDAT 5 25-OCT-23 1Z43 1 REMARK REVDAT 4 13-JUL-11 1Z43 1 VERSN REVDAT 3 24-FEB-09 1Z43 1 VERSN REVDAT 2 19-JUL-05 1Z43 1 JRNL REVDAT 1 14-JUN-05 1Z43 0 JRNL AUTH T.HAINZL,S.HUANG,A.E.SAUER-ERIKSSON JRNL TITL STRUCTURAL INSIGHTS INTO SRP RNA: AN INDUCED FIT MECHANISM JRNL TITL 2 FOR SRP ASSEMBLY JRNL REF RNA V. 11 1043 2005 JRNL REFN ISSN 1355-8382 JRNL PMID 15928341 JRNL DOI 10.1261/RNA.2080205 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.HAINZL,S.HUANG,A.E.SAUER-ERIKSSON REMARK 1 TITL STRUCTURE OF THE SRP19 RNA COMPLEX AND IMPLICATIONS FOR REMARK 1 TITL 2 SIGNAL RECOGNITION PARTICLE ASSEMBLY REMARK 1 REF NATURE V. 417 767 2002 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 12050674 REMARK 1 DOI 10.1038/NATURE00768 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 14857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 783 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1051 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4580 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 2169 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.44000 REMARK 3 B22 (A**2) : 2.44000 REMARK 3 B33 (A**2) : -4.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.430 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.310 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.364 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.786 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2427 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 819 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3787 ; 3.226 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2141 ; 2.024 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 404 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1061 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1220 ; 0.320 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1418 ; 0.360 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 8 ; 0.026 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 208 ; 0.246 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 10 ; 0.128 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.243 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 8 ; 0.159 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.274 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2427 ; 2.050 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3787 ; 3.007 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 138 A 147 REMARK 3 RESIDUE RANGE : A 232 A 238 REMARK 3 ORIGIN FOR THE GROUP (A): 46.6659 -6.8158 113.3783 REMARK 3 T TENSOR REMARK 3 T11: 0.3863 T22: 0.3913 REMARK 3 T33: 0.3186 T12: -0.0011 REMARK 3 T13: 0.0861 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 6.1014 L22: 1.9712 REMARK 3 L33: 3.2089 L12: -2.5542 REMARK 3 L13: 1.3466 L23: -2.3300 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: 0.0238 S13: 0.0507 REMARK 3 S21: 0.0454 S22: -0.1358 S23: 0.0555 REMARK 3 S31: -0.2436 S32: -0.0354 S33: 0.1524 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 197 REMARK 3 RESIDUE RANGE : A 224 A 231 REMARK 3 ORIGIN FOR THE GROUP (A): 38.7391 2.7178 96.9195 REMARK 3 T TENSOR REMARK 3 T11: 0.3539 T22: 0.3935 REMARK 3 T33: 0.4392 T12: -0.0443 REMARK 3 T13: 0.0411 T23: 0.0532 REMARK 3 L TENSOR REMARK 3 L11: 3.0243 L22: 1.1813 REMARK 3 L33: 4.2537 L12: -1.0789 REMARK 3 L13: 0.8167 L23: -2.3122 REMARK 3 S TENSOR REMARK 3 S11: 0.1438 S12: 0.3627 S13: 0.1684 REMARK 3 S21: 0.0379 S22: -0.2062 S23: 0.1296 REMARK 3 S31: 0.0607 S32: 0.6235 S33: 0.0624 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 148 A 152 REMARK 3 RESIDUE RANGE : A 178 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0199 5.0654 102.3240 REMARK 3 T TENSOR REMARK 3 T11: 0.3049 T22: 0.7776 REMARK 3 T33: 0.2935 T12: 0.0177 REMARK 3 T13: 0.2039 T23: 0.1161 REMARK 3 L TENSOR REMARK 3 L11: 10.7175 L22: 4.3930 REMARK 3 L33: 1.9753 L12: 2.4234 REMARK 3 L13: 5.2098 L23: -1.7102 REMARK 3 S TENSOR REMARK 3 S11: -0.0868 S12: 0.3200 S13: 0.6706 REMARK 3 S21: -0.4278 S22: 0.5603 S23: 0.8108 REMARK 3 S31: 0.1144 S32: -0.6856 S33: -0.4736 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 153 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2647 5.9915 81.3993 REMARK 3 T TENSOR REMARK 3 T11: 0.5520 T22: 0.8347 REMARK 3 T33: 0.6567 T12: -0.1139 REMARK 3 T13: -0.0225 T23: 0.1573 REMARK 3 L TENSOR REMARK 3 L11: -2.0784 L22: 2.4155 REMARK 3 L33: 4.6705 L12: -1.4214 REMARK 3 L13: 2.8585 L23: -5.6027 REMARK 3 S TENSOR REMARK 3 S11: 0.3216 S12: -0.5064 S13: -0.3469 REMARK 3 S21: -0.9661 S22: 0.2097 S23: 0.1560 REMARK 3 S31: 1.3979 S32: -0.5524 S33: -0.5312 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 198 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0175 16.7558 74.2380 REMARK 3 T TENSOR REMARK 3 T11: 0.3249 T22: 0.4425 REMARK 3 T33: 0.4332 T12: 0.0353 REMARK 3 T13: 0.0567 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 4.9218 L22: 2.1865 REMARK 3 L33: 1.1608 L12: -2.4501 REMARK 3 L13: 2.3653 L23: -2.7260 REMARK 3 S TENSOR REMARK 3 S11: 0.0493 S12: -0.0781 S13: -0.2088 REMARK 3 S21: -0.1092 S22: 0.0312 S23: 0.1426 REMARK 3 S31: -0.0954 S32: -0.2693 S33: -0.0804 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z43 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.081 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15645 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1LNG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, TRIS BUFFER, SODIUM CITRATE, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.76000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.05500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.05500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 185.64000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.05500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.05500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.88000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.05500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.05500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 185.64000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.05500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.05500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.88000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 123.76000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 C A 139 C2' C A 139 C1' -0.056 REMARK 500 G A 142 C4 G A 142 C5 -0.050 REMARK 500 G A 142 C5 G A 142 N7 -0.037 REMARK 500 G A 143 C5 G A 143 C6 -0.060 REMARK 500 C A 144 N1 C A 144 C6 -0.055 REMARK 500 C A 144 C4 C A 144 C5 -0.067 REMARK 500 G A 145 C4 G A 145 C5 -0.046 REMARK 500 G A 145 C5 G A 145 C6 -0.065 REMARK 500 G A 148 O5' G A 148 C5' -0.063 REMARK 500 A A 186 N3 A A 186 C4 -0.062 REMARK 500 A A 186 C5 A A 186 N7 -0.039 REMARK 500 A A 186 N9 A A 186 C4 -0.067 REMARK 500 G A 200 O5' G A 200 C5' -0.057 REMARK 500 A A 203 N3 A A 203 C4 -0.040 REMARK 500 G A 205 C6 G A 205 N1 -0.049 REMARK 500 C A 206 O5' C A 206 C5' -0.060 REMARK 500 C A 208 N3 C A 208 C4 -0.048 REMARK 500 G A 209 C4 G A 209 C5 -0.050 REMARK 500 G A 210 O5' G A 210 C5' -0.055 REMARK 500 A A 211 C2' A A 211 C1' -0.050 REMARK 500 A A 211 N3 A A 211 C4 -0.039 REMARK 500 A A 211 N9 A A 211 C4 -0.050 REMARK 500 G A 215 C4 G A 215 C5 -0.048 REMARK 500 G A 217 C6 G A 217 N1 -0.049 REMARK 500 C A 218 O5' C A 218 C5' -0.063 REMARK 500 C A 218 C2 C A 218 N3 -0.054 REMARK 500 A A 219 N3 A A 219 C4 -0.050 REMARK 500 A A 220 C2' A A 220 C1' -0.051 REMARK 500 A A 225 O5' A A 225 C5' -0.074 REMARK 500 U A 235 C2' U A 235 C1' -0.070 REMARK 500 C A 236 N1 C A 236 C6 -0.045 REMARK 500 G A 237 C2' G A 237 C1' -0.049 REMARK 500 G A 238 N3 G A 238 C4 -0.072 REMARK 500 G A 238 C6 G A 238 N1 -0.047 REMARK 500 G A 238 C5 G A 238 N7 -0.047 REMARK 500 G A 238 C8 G A 238 N9 -0.051 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 138 O4' - C1' - N9 ANGL. DEV. = 9.4 DEGREES REMARK 500 G A 138 C2 - N3 - C4 ANGL. DEV. = -4.0 DEGREES REMARK 500 G A 138 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 G A 138 N9 - C4 - C5 ANGL. DEV. = 2.9 DEGREES REMARK 500 C A 139 O4' - C1' - N1 ANGL. DEV. = 9.7 DEGREES REMARK 500 C A 139 C2 - N3 - C4 ANGL. DEV. = -3.6 DEGREES REMARK 500 C A 139 C5 - C6 - N1 ANGL. DEV. = -4.2 DEGREES REMARK 500 C A 139 N3 - C4 - N4 ANGL. DEV. = -7.1 DEGREES REMARK 500 C A 139 C5 - C4 - N4 ANGL. DEV. = 6.0 DEGREES REMARK 500 C A 139 C6 - N1 - C1' ANGL. DEV. = 8.6 DEGREES REMARK 500 C A 139 C2 - N1 - C1' ANGL. DEV. = -10.3 DEGREES REMARK 500 U A 140 O3' - P - O5' ANGL. DEV. = -13.2 DEGREES REMARK 500 U A 140 P - O5' - C5' ANGL. DEV. = -14.4 DEGREES REMARK 500 U A 140 C1' - O4' - C4' ANGL. DEV. = 5.5 DEGREES REMARK 500 U A 140 O4' - C1' - C2' ANGL. DEV. = -6.9 DEGREES REMARK 500 C A 141 OP1 - P - OP2 ANGL. DEV. = -9.3 DEGREES REMARK 500 C A 141 C6 - N1 - C2 ANGL. DEV. = -3.4 DEGREES REMARK 500 C A 141 N1 - C2 - N3 ANGL. DEV. = 7.0 DEGREES REMARK 500 C A 141 C2 - N3 - C4 ANGL. DEV. = -3.2 DEGREES REMARK 500 C A 141 N1 - C2 - O2 ANGL. DEV. = -5.9 DEGREES REMARK 500 G A 142 O3' - P - OP2 ANGL. DEV. = 9.5 DEGREES REMARK 500 G A 142 C4' - C3' - C2' ANGL. DEV. = -6.5 DEGREES REMARK 500 G A 142 O4' - C1' - N9 ANGL. DEV. = 8.1 DEGREES REMARK 500 G A 142 C8 - N9 - C4 ANGL. DEV. = -4.1 DEGREES REMARK 500 G A 142 N9 - C4 - C5 ANGL. DEV. = 3.7 DEGREES REMARK 500 G A 143 P - O5' - C5' ANGL. DEV. = -13.9 DEGREES REMARK 500 G A 143 N1 - C2 - N3 ANGL. DEV. = 3.8 DEGREES REMARK 500 G A 143 C2 - N3 - C4 ANGL. DEV. = -3.5 DEGREES REMARK 500 G A 143 C6 - C5 - N7 ANGL. DEV. = -3.6 DEGREES REMARK 500 C A 144 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 G A 145 O5' - P - OP2 ANGL. DEV. = -6.3 DEGREES REMARK 500 G A 145 O5' - C5' - C4' ANGL. DEV. = -5.0 DEGREES REMARK 500 G A 146 C4 - C5 - N7 ANGL. DEV. = -2.6 DEGREES REMARK 500 G A 146 N9 - C4 - C5 ANGL. DEV. = 2.8 DEGREES REMARK 500 G A 146 C3' - O3' - P ANGL. DEV. = 8.0 DEGREES REMARK 500 U A 147 P - O5' - C5' ANGL. DEV. = -15.2 DEGREES REMARK 500 U A 147 O4' - C1' - N1 ANGL. DEV. = -6.5 DEGREES REMARK 500 U A 147 N3 - C2 - O2 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 149 O4' - C1' - N9 ANGL. DEV. = 7.7 DEGREES REMARK 500 G A 151 N9 - C1' - C2' ANGL. DEV. = -7.1 DEGREES REMARK 500 G A 151 C6 - C5 - N7 ANGL. DEV. = -4.1 DEGREES REMARK 500 G A 151 N1 - C6 - O6 ANGL. DEV. = 4.1 DEGREES REMARK 500 C A 158 C3' - C2' - C1' ANGL. DEV. = -4.7 DEGREES REMARK 500 A A 165 C5' - C4' - O4' ANGL. DEV. = 7.3 DEGREES REMARK 500 A A 165 C8 - N9 - C4 ANGL. DEV. = -3.5 DEGREES REMARK 500 G A 169 N9 - C1' - C2' ANGL. DEV. = -8.2 DEGREES REMARK 500 G A 171 O4' - C1' - N9 ANGL. DEV. = 7.4 DEGREES REMARK 500 A A 172 C3' - O3' - P ANGL. DEV. = 9.0 DEGREES REMARK 500 C A 178 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 C A 178 N1 - C2 - O2 ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 181 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LNG RELATED DB: PDB REMARK 900 THE SAME RNA COMPLEXED WITH SRP19 DBREF 1Z43 A 138 238 PDB 1Z43 1Z43 138 238 SEQRES 1 A 101 G C U C G G C G G U G G G SEQRES 2 A 101 G G A G C A U C U C C U G SEQRES 3 A 101 U A G G G G A G A U G U A SEQRES 4 A 101 A C C C C C U U U A C C U SEQRES 5 A 101 G C C G A A C C C C G C C SEQRES 6 A 101 A G G C C C G G A A G G G SEQRES 7 A 101 A G C A A C G G U A G G C SEQRES 8 A 101 A G G A C G U C G G FORMUL 2 HOH *139(H2 O) CRYST1 62.110 62.110 247.520 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016100 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004040 0.00000