HEADER TOXIN 16-MAR-05 1Z52 TITLE PROAEROLYSIN MUTANT W373L COMPND MOL_ID: 1; COMPND 2 MOLECULE: AEROLYSIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROMONAS HYDROPHILA; SOURCE 3 ORGANISM_TAXID: 644; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PRK2013 KEYWDS TOXIN, HEMOLYTIC POLYPEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.PARKER,S.C.FEIL,J.W.TANG REVDAT 3 10-NOV-21 1Z52 1 SEQADV REVDAT 2 24-FEB-09 1Z52 1 VERSN REVDAT 1 07-MAR-06 1Z52 0 JRNL AUTH M.W.PARKER,S.C.FEIL,J.W.TANG JRNL TITL CRYSTAL STRUCTURE OF PROAEROLYSIN AT 2.3 A RESOLUTION AND JRNL TITL 2 STRUCTURAL ANALYSES OF SINGLE-SITE MUTANTS AS A BASIS FOR JRNL TITL 3 UNDERSTANDING MEMBRANE INSERTION OF THE TOXIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 36297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1908 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7047 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.34 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.47 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.864 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.47 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.492 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z52 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1170 REMARK 200 MONOCHROMATOR : POLARISATION REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42497 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM ACETATE, PH 5.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.35550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.10750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.57050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.10750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.35550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.57050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 424 REMARK 465 ASP A 425 REMARK 465 SER A 426 REMARK 465 LYS A 427 REMARK 465 VAL A 428 REMARK 465 ARG A 429 REMARK 465 ARG A 430 REMARK 465 ALA A 431 REMARK 465 ARG A 432 REMARK 465 SER A 433 REMARK 465 VAL A 434 REMARK 465 ASP A 435 REMARK 465 GLY A 436 REMARK 465 ALA A 437 REMARK 465 GLY A 438 REMARK 465 GLN A 439 REMARK 465 GLN A 470 REMARK 465 ALA B 424 REMARK 465 ASP B 425 REMARK 465 SER B 426 REMARK 465 LYS B 427 REMARK 465 VAL B 428 REMARK 465 ARG B 429 REMARK 465 ARG B 430 REMARK 465 ALA B 431 REMARK 465 ARG B 432 REMARK 465 SER B 433 REMARK 465 VAL B 434 REMARK 465 ASP B 435 REMARK 465 GLY B 436 REMARK 465 ALA B 437 REMARK 465 GLY B 438 REMARK 465 GLN B 439 REMARK 465 GLY B 440 REMARK 465 ALA B 468 REMARK 465 ASN B 469 REMARK 465 GLN B 470 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 131 NZ LYS B 167 2.12 REMARK 500 OD1 ASN B 155 CE LYS B 167 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 517 O HOH B 534 4456 1.94 REMARK 500 OG1 THR A 210 O HOH B 548 4556 2.14 REMARK 500 CB ALA B 1 O HOH A 518 4556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 189 C THR A 190 N 0.207 REMARK 500 TRP A 203 C ALA A 204 N -0.151 REMARK 500 TRP A 370 C TRP A 371 N -0.213 REMARK 500 GLN B 102 C TRP B 103 N 0.198 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 104 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 194 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 220 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 442 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 104 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 144 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 152 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 163 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 288 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 16 114.61 -38.09 REMARK 500 PHE A 112 -55.67 -146.21 REMARK 500 TRP A 127 61.41 39.40 REMARK 500 ASP A 145 41.58 -170.46 REMARK 500 THR A 190 43.28 -74.94 REMARK 500 GLN A 191 139.63 157.38 REMARK 500 LYS A 198 143.04 -178.68 REMARK 500 GLU A 252 37.03 -146.90 REMARK 500 SER A 256 68.54 -110.91 REMARK 500 TYR A 304 157.60 176.26 REMARK 500 TRP A 324 -73.34 -74.97 REMARK 500 LYS A 349 -58.57 -147.96 REMARK 500 VAL A 368 90.50 -66.06 REMARK 500 TRP A 370 -96.95 -136.17 REMARK 500 PRO A 421 124.87 -32.90 REMARK 500 GLU B 2 -52.73 -21.16 REMARK 500 SER B 13 50.63 -116.03 REMARK 500 LYS B 22 40.76 72.58 REMARK 500 ASN B 62 36.51 70.73 REMARK 500 PHE B 112 -65.24 -138.63 REMARK 500 TRP B 127 70.31 50.69 REMARK 500 VAL B 128 69.46 -101.67 REMARK 500 ASP B 145 80.72 -153.35 REMARK 500 SER B 192 128.37 -171.70 REMARK 500 ASP B 193 149.09 173.75 REMARK 500 LYS B 198 152.25 176.78 REMARK 500 SER B 264 123.70 -31.10 REMARK 500 ARG B 288 61.11 33.01 REMARK 500 ARG B 336 62.43 39.73 REMARK 500 LYS B 349 -51.67 -129.78 REMARK 500 PRO B 365 -37.58 -31.85 REMARK 500 TRP B 370 -102.30 -137.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 443 -14.19 REMARK 500 VAL B 172 11.62 REMARK 500 LEU B 196 12.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PRE RELATED DB: PDB REMARK 900 WILD TYPE PROAEROLYSIN DBREF 1Z52 A 1 470 UNP P09167 AERA_AERHY 24 493 DBREF 1Z52 B 1 470 UNP P09167 AERA_AERHY 24 493 SEQADV 1Z52 LEU A 373 UNP P09167 TRP 396 ENGINEERED MUTATION SEQADV 1Z52 LEU B 373 UNP P09167 TRP 396 ENGINEERED MUTATION SEQRES 1 A 470 ALA GLU PRO VAL TYR PRO ASP GLN LEU ARG LEU PHE SER SEQRES 2 A 470 LEU GLY GLN GLY VAL CYS GLY ASP LYS TYR ARG PRO VAL SEQRES 3 A 470 ASN ARG GLU GLU ALA GLN SER VAL LYS SER ASN ILE VAL SEQRES 4 A 470 GLY MET MET GLY GLN TRP GLN ILE SER GLY LEU ALA ASN SEQRES 5 A 470 GLY TRP VAL ILE MET GLY PRO GLY TYR ASN GLY GLU ILE SEQRES 6 A 470 LYS PRO GLY THR ALA SER ASN THR TRP CYS TYR PRO THR SEQRES 7 A 470 ASN PRO VAL THR GLY GLU ILE PRO THR LEU SER ALA LEU SEQRES 8 A 470 ASP ILE PRO ASP GLY ASP GLU VAL ASP VAL GLN TRP ARG SEQRES 9 A 470 LEU VAL HIS ASP SER ALA ASN PHE ILE LYS PRO THR SER SEQRES 10 A 470 TYR LEU ALA HIS TYR LEU GLY TYR ALA TRP VAL GLY GLY SEQRES 11 A 470 ASN HIS SER GLN TYR VAL GLY GLU ASP MET ASP VAL THR SEQRES 12 A 470 ARG ASP GLY ASP GLY TRP VAL ILE ARG GLY ASN ASN ASP SEQRES 13 A 470 GLY GLY CYS ASP GLY TYR ARG CYS GLY ASP LYS THR ALA SEQRES 14 A 470 ILE LYS VAL SER ASN PHE ALA TYR ASN LEU ASP PRO ASP SEQRES 15 A 470 SER PHE LYS HIS GLY ASP VAL THR GLN SER ASP ARG GLN SEQRES 16 A 470 LEU VAL LYS THR VAL VAL GLY TRP ALA VAL ASN ASP SER SEQRES 17 A 470 ASP THR PRO GLN SER GLY TYR ASP VAL THR LEU ARG TYR SEQRES 18 A 470 ASP THR ALA THR ASN TRP SER LYS THR ASN THR TYR GLY SEQRES 19 A 470 LEU SER GLU LYS VAL THR THR LYS ASN LYS PHE LYS TRP SEQRES 20 A 470 PRO LEU VAL GLY GLU THR GLU LEU SER ILE GLU ILE ALA SEQRES 21 A 470 ALA ASN GLN SER TRP ALA SER GLN ASN GLY GLY SER THR SEQRES 22 A 470 THR THR SER LEU SER GLN SER VAL ARG PRO THR VAL PRO SEQRES 23 A 470 ALA ARG SER LYS ILE PRO VAL LYS ILE GLU LEU TYR LYS SEQRES 24 A 470 ALA ASP ILE SER TYR PRO TYR GLU PHE LYS ALA ASP VAL SEQRES 25 A 470 SER TYR ASP LEU THR LEU SER GLY PHE LEU ARG TRP GLY SEQRES 26 A 470 GLY ASN ALA TRP TYR THR HIS PRO ASP ASN ARG PRO ASN SEQRES 27 A 470 TRP ASN HIS THR PHE VAL ILE GLY PRO TYR LYS ASP LYS SEQRES 28 A 470 ALA SER SER ILE ARG TYR GLN TRP ASP LYS ARG TYR ILE SEQRES 29 A 470 PRO GLY GLU VAL LYS TRP TRP ASP LEU ASN TRP THR ILE SEQRES 30 A 470 GLN GLN ASN GLY LEU SER THR MET GLN ASN ASN LEU ALA SEQRES 31 A 470 ARG VAL LEU ARG PRO VAL ARG ALA GLY ILE THR GLY ASP SEQRES 32 A 470 PHE SER ALA GLU SER GLN PHE ALA GLY ASN ILE GLU ILE SEQRES 33 A 470 GLY ALA PRO VAL PRO LEU ALA ALA ASP SER LYS VAL ARG SEQRES 34 A 470 ARG ALA ARG SER VAL ASP GLY ALA GLY GLN GLY LEU ARG SEQRES 35 A 470 LEU GLU ILE PRO LEU ASP ALA GLN GLU LEU SER GLY LEU SEQRES 36 A 470 GLY PHE ASN ASN VAL SER LEU SER VAL THR PRO ALA ALA SEQRES 37 A 470 ASN GLN SEQRES 1 B 470 ALA GLU PRO VAL TYR PRO ASP GLN LEU ARG LEU PHE SER SEQRES 2 B 470 LEU GLY GLN GLY VAL CYS GLY ASP LYS TYR ARG PRO VAL SEQRES 3 B 470 ASN ARG GLU GLU ALA GLN SER VAL LYS SER ASN ILE VAL SEQRES 4 B 470 GLY MET MET GLY GLN TRP GLN ILE SER GLY LEU ALA ASN SEQRES 5 B 470 GLY TRP VAL ILE MET GLY PRO GLY TYR ASN GLY GLU ILE SEQRES 6 B 470 LYS PRO GLY THR ALA SER ASN THR TRP CYS TYR PRO THR SEQRES 7 B 470 ASN PRO VAL THR GLY GLU ILE PRO THR LEU SER ALA LEU SEQRES 8 B 470 ASP ILE PRO ASP GLY ASP GLU VAL ASP VAL GLN TRP ARG SEQRES 9 B 470 LEU VAL HIS ASP SER ALA ASN PHE ILE LYS PRO THR SER SEQRES 10 B 470 TYR LEU ALA HIS TYR LEU GLY TYR ALA TRP VAL GLY GLY SEQRES 11 B 470 ASN HIS SER GLN TYR VAL GLY GLU ASP MET ASP VAL THR SEQRES 12 B 470 ARG ASP GLY ASP GLY TRP VAL ILE ARG GLY ASN ASN ASP SEQRES 13 B 470 GLY GLY CYS ASP GLY TYR ARG CYS GLY ASP LYS THR ALA SEQRES 14 B 470 ILE LYS VAL SER ASN PHE ALA TYR ASN LEU ASP PRO ASP SEQRES 15 B 470 SER PHE LYS HIS GLY ASP VAL THR GLN SER ASP ARG GLN SEQRES 16 B 470 LEU VAL LYS THR VAL VAL GLY TRP ALA VAL ASN ASP SER SEQRES 17 B 470 ASP THR PRO GLN SER GLY TYR ASP VAL THR LEU ARG TYR SEQRES 18 B 470 ASP THR ALA THR ASN TRP SER LYS THR ASN THR TYR GLY SEQRES 19 B 470 LEU SER GLU LYS VAL THR THR LYS ASN LYS PHE LYS TRP SEQRES 20 B 470 PRO LEU VAL GLY GLU THR GLU LEU SER ILE GLU ILE ALA SEQRES 21 B 470 ALA ASN GLN SER TRP ALA SER GLN ASN GLY GLY SER THR SEQRES 22 B 470 THR THR SER LEU SER GLN SER VAL ARG PRO THR VAL PRO SEQRES 23 B 470 ALA ARG SER LYS ILE PRO VAL LYS ILE GLU LEU TYR LYS SEQRES 24 B 470 ALA ASP ILE SER TYR PRO TYR GLU PHE LYS ALA ASP VAL SEQRES 25 B 470 SER TYR ASP LEU THR LEU SER GLY PHE LEU ARG TRP GLY SEQRES 26 B 470 GLY ASN ALA TRP TYR THR HIS PRO ASP ASN ARG PRO ASN SEQRES 27 B 470 TRP ASN HIS THR PHE VAL ILE GLY PRO TYR LYS ASP LYS SEQRES 28 B 470 ALA SER SER ILE ARG TYR GLN TRP ASP LYS ARG TYR ILE SEQRES 29 B 470 PRO GLY GLU VAL LYS TRP TRP ASP LEU ASN TRP THR ILE SEQRES 30 B 470 GLN GLN ASN GLY LEU SER THR MET GLN ASN ASN LEU ALA SEQRES 31 B 470 ARG VAL LEU ARG PRO VAL ARG ALA GLY ILE THR GLY ASP SEQRES 32 B 470 PHE SER ALA GLU SER GLN PHE ALA GLY ASN ILE GLU ILE SEQRES 33 B 470 GLY ALA PRO VAL PRO LEU ALA ALA ASP SER LYS VAL ARG SEQRES 34 B 470 ARG ALA ARG SER VAL ASP GLY ALA GLY GLN GLY LEU ARG SEQRES 35 B 470 LEU GLU ILE PRO LEU ASP ALA GLN GLU LEU SER GLY LEU SEQRES 36 B 470 GLY PHE ASN ASN VAL SER LEU SER VAL THR PRO ALA ALA SEQRES 37 B 470 ASN GLN FORMUL 3 HOH *132(H2 O) HELIX 1 1 TYR A 5 LEU A 9 5 5 HELIX 2 2 ASN A 27 VAL A 34 1 8 HELIX 3 3 VAL A 34 GLY A 40 1 7 HELIX 4 4 PRO A 59 ASN A 62 5 4 HELIX 5 5 ASP A 97 HIS A 107 1 11 HELIX 6 6 PHE A 112 LEU A 123 1 12 HELIX 7 7 TYR A 233 GLU A 237 5 5 HELIX 8 8 SER A 264 GLN A 268 5 5 HELIX 9 9 SER A 354 LYS A 361 1 8 HELIX 10 10 ASP A 372 GLY A 381 1 10 HELIX 11 11 GLY A 381 LEU A 393 1 13 HELIX 12 12 ASP A 448 LEU A 455 1 8 HELIX 13 13 TYR B 5 LEU B 9 5 5 HELIX 14 14 ASN B 27 VAL B 34 1 8 HELIX 15 15 VAL B 34 GLY B 40 1 7 HELIX 16 16 PRO B 59 ASN B 62 5 4 HELIX 17 17 ASP B 97 HIS B 107 1 11 HELIX 18 18 PHE B 112 LEU B 123 1 12 HELIX 19 19 GLY B 234 GLU B 237 5 4 HELIX 20 20 SER B 264 GLN B 268 5 5 HELIX 21 21 ASP B 350 SER B 353 5 4 HELIX 22 22 SER B 354 LYS B 361 1 8 HELIX 23 23 ASP B 372 GLY B 381 1 10 HELIX 24 24 GLY B 381 LEU B 393 1 13 HELIX 25 25 ASP B 448 GLY B 456 1 9 SHEET 1 A 3 ARG A 10 PHE A 12 0 SHEET 2 A 3 THR A 73 PRO A 77 -1 O THR A 73 N PHE A 12 SHEET 3 A 3 TYR A 23 PRO A 25 -1 N ARG A 24 O TYR A 76 SHEET 1 B 3 ILE A 47 LEU A 50 0 SHEET 2 B 3 TRP A 54 MET A 57 -1 O TRP A 54 N LEU A 50 SHEET 3 B 3 ILE A 65 PRO A 67 -1 O LYS A 66 N VAL A 55 SHEET 1 C24 MET A 140 ARG A 144 0 SHEET 2 C24 TRP A 149 GLY A 153 -1 O ARG A 152 N ASP A 141 SHEET 3 C24 ALA A 169 HIS A 186 -1 O ILE A 170 N ILE A 151 SHEET 4 C24 VAL A 239 THR A 240 1 O THR A 240 N LEU A 179 SHEET 5 C24 ALA A 169 HIS A 186 1 N LEU A 179 O THR A 240 SHEET 6 C24 SER A 289 PHE A 321 -1 O ASP A 311 N ASN A 178 SHEET 7 C24 ARG A 194 ASN A 206 -1 N ASN A 206 O SER A 289 SHEET 8 C24 ARG A 442 GLU A 444 -1 O GLU A 444 N TRP A 203 SHEET 9 C24 ARG A 194 ASN A 206 -1 N TRP A 203 O GLU A 444 SHEET 10 C24 SER A 289 PHE A 321 -1 O SER A 289 N ASN A 206 SHEET 11 C24 VAL A 420 PRO A 421 -1 O VAL A 420 N LYS A 290 SHEET 12 C24 SER A 289 PHE A 321 -1 N LYS A 290 O VAL A 420 SHEET 13 C24 GLU A 415 ILE A 416 -1 O GLU A 415 N LYS A 294 SHEET 14 C24 SER A 289 PHE A 321 -1 N LYS A 294 O GLU A 415 SHEET 15 C24 ASN A 338 ILE A 345 -1 O PHE A 343 N LEU A 316 SHEET 16 C24 SER A 289 PHE A 321 -1 N LEU A 316 O PHE A 343 SHEET 17 C24 VAL A 396 ALA A 411 -1 O PHE A 410 N TYR A 298 SHEET 18 C24 TYR A 215 LYS A 229 -1 N SER A 228 O SER A 405 SHEET 19 C24 GLY A 270 VAL A 281 -1 O THR A 273 N THR A 225 SHEET 20 C24 TYR A 215 LYS A 229 -1 N THR A 225 O THR A 273 SHEET 21 C24 ASN A 458 PRO A 466 -1 O THR A 465 N ASP A 216 SHEET 22 C24 TYR A 215 LYS A 229 -1 N ASP A 216 O THR A 465 SHEET 23 C24 VAL A 396 ALA A 411 -1 O SER A 405 N SER A 228 SHEET 24 C24 LEU A 91 ILE A 93 1 N ILE A 93 O ARG A 397 SHEET 1 D 2 PHE A 245 LYS A 246 0 SHEET 2 D 2 GLU A 258 ILE A 259 -1 O ILE A 259 N PHE A 245 SHEET 1 E 3 ARG B 10 PHE B 12 0 SHEET 2 E 3 THR B 73 PRO B 77 -1 O CYS B 75 N ARG B 10 SHEET 3 E 3 TYR B 23 PRO B 25 -1 N ARG B 24 O TYR B 76 SHEET 1 F 3 ILE B 47 LEU B 50 0 SHEET 2 F 3 TRP B 54 MET B 57 -1 O TRP B 54 N LEU B 50 SHEET 3 F 3 ILE B 65 PRO B 67 -1 O LYS B 66 N VAL B 55 SHEET 1 G22 MET B 140 ASP B 145 0 SHEET 2 G22 GLY B 148 GLY B 153 -1 O VAL B 150 N THR B 143 SHEET 3 G22 ALA B 169 HIS B 186 -1 O VAL B 172 N TRP B 149 SHEET 4 G22 VAL B 239 THR B 240 1 O THR B 240 N LEU B 179 SHEET 5 G22 ALA B 169 HIS B 186 1 N LEU B 179 O THR B 240 SHEET 6 G22 SER B 289 PHE B 321 -1 O ASP B 315 N SER B 173 SHEET 7 G22 GLN B 191 VAL B 205 -1 N LYS B 198 O LEU B 297 SHEET 8 G22 ARG B 442 GLU B 444 -1 O ARG B 442 N VAL B 205 SHEET 9 G22 GLN B 191 VAL B 205 -1 N VAL B 205 O ARG B 442 SHEET 10 G22 SER B 289 PHE B 321 -1 O LEU B 297 N LYS B 198 SHEET 11 G22 VAL B 420 PRO B 421 -1 O VAL B 420 N LYS B 290 SHEET 12 G22 SER B 289 PHE B 321 -1 N LYS B 290 O VAL B 420 SHEET 13 G22 GLU B 415 ILE B 416 -1 O GLU B 415 N LYS B 294 SHEET 14 G22 SER B 289 PHE B 321 -1 N LYS B 294 O GLU B 415 SHEET 15 G22 ASN B 338 ILE B 345 -1 O TRP B 339 N GLY B 320 SHEET 16 G22 SER B 289 PHE B 321 -1 N GLY B 320 O TRP B 339 SHEET 17 G22 VAL B 396 ALA B 411 -1 O PHE B 410 N TYR B 298 SHEET 18 G22 ALA B 224 LYS B 229 -1 N ASN B 226 O GLU B 407 SHEET 19 G22 GLY B 270 THR B 274 -1 O THR B 273 N THR B 225 SHEET 20 G22 ALA B 224 LYS B 229 -1 N THR B 225 O THR B 273 SHEET 21 G22 VAL B 396 ALA B 411 -1 O GLU B 407 N ASN B 226 SHEET 22 G22 LEU B 91 ILE B 93 1 N ILE B 93 O ARG B 397 SHEET 1 H 3 LEU B 277 VAL B 281 0 SHEET 2 H 3 TYR B 215 ASP B 222 -1 N TYR B 221 O LEU B 277 SHEET 3 H 3 ASN B 458 PRO B 466 -1 O THR B 465 N ASP B 216 SHEET 1 I 2 PHE B 245 LYS B 246 0 SHEET 2 I 2 GLU B 258 ILE B 259 -1 O ILE B 259 N PHE B 245 SSBOND 1 CYS A 19 CYS A 75 1555 1555 2.05 SSBOND 2 CYS A 159 CYS A 164 1555 1555 2.04 SSBOND 3 CYS B 19 CYS B 75 1555 1555 2.05 SSBOND 4 CYS B 159 CYS B 164 1555 1555 1.99 CRYST1 70.711 91.141 168.215 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014142 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010972 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005945 0.00000