data_1Z7F # _entry.id 1Z7F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Z7F pdb_00001z7f 10.2210/pdb1z7f/pdb NDB AR0061 ? ? RCSB RCSB032392 ? ? WWPDB D_1000032392 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type NDB AR0002 'The same sequence at 2.5 A resolution' unspecified PDB 1Z7F . unspecified PDB 1YRM . unspecified PDB 1YY0 . unspecified PDB 1YZD . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Z7F _pdbx_database_status.recvd_initial_deposition_date 2005-03-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gherghe, C.M.' 1 'Krahn, J.M.' 2 'Weeks, K.M.' 3 # _citation.id primary _citation.title ;Crystal structures, reactivity and inferred acylation transition States for 2'-amine substituted RNA. ; _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 127 _citation.page_first 13622 _citation.page_last 13628 _citation.year 2005 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16190727 _citation.pdbx_database_id_DOI 10.1021/ja053647y # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gherghe, C.M.' 1 ? primary 'Krahn, J.M.' 2 ? primary 'Weeks, K.M.' 3 ? # _cell.entry_id 1Z7F _cell.length_a 43.000 _cell.length_b 43.000 _cell.length_c 122.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z7F _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'" 5082.079 3 ? ? ? ? 2 non-polymer syn 'STRONTIUM ION' 87.620 2 ? ? ? ? 3 water nat water 18.015 67 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCAGACUUAAAUCUGC _entity_poly.pdbx_seq_one_letter_code_can GCAGACUUAAAUCUGC _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 A n 1 4 G n 1 5 A n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 A n 1 12 U n 1 13 C n 1 14 U n 1 15 G n 1 16 C n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1Z7F _struct_ref.pdbx_db_accession 1Z7F _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1Z7F A 1 ? 16 ? 1Z7F 1 ? 16 ? 1 16 2 1 1Z7F B 1 ? 16 ? 1Z7F 1 ? 16 ? 1 16 3 1 1Z7F C 1 ? 16 ? 1Z7F 17 ? 32 ? 17 32 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 1Z7F _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_percent_sol 42.40 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 273 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'MPD, sodium cacodylate, spermine, strontium chloride, magnesium chloride, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 273K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 spermine ? ? ? 1 4 1 'strontium chloride' ? ? ? 1 5 1 'magnesium chloride' ? ? ? 1 6 1 H2O ? ? ? 1 7 2 MPD ? ? ? 1 8 2 'sodium cacodylate' ? ? ? 1 9 2 'strontium chloride' ? ? ? 1 10 2 'magnesium chloride' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date 2004-02-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1Z7F _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 27 _reflns.d_resolution_high 2.00 _reflns.number_obs 8972 _reflns.number_all 9573 _reflns.percent_possible_obs 93.8 _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_Rsym_value 0.108 _reflns.pdbx_netI_over_sigmaI 22.11 _reflns.B_iso_Wilson_estimate 26.5 _reflns.pdbx_redundancy 12.02 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 68.7 _reflns_shell.Rmerge_I_obs 0.176 _reflns_shell.pdbx_Rsym_value 0.158 _reflns_shell.meanI_over_sigI_obs 4.59 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 638 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1Z7F _refine.ls_number_reflns_obs 7927 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1006060.31 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.01 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 97.2 _refine.ls_R_factor_obs 0.261 _refine.ls_R_factor_all 0.275 _refine.ls_R_factor_R_work 0.261 _refine.ls_R_factor_R_free 0.28 _refine.ls_R_factor_R_free_error 0.013 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.7 _refine.ls_number_reflns_R_free 448 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 33.4 _refine.aniso_B[1][1] 4.87 _refine.aniso_B[2][2] 4.87 _refine.aniso_B[3][3] -9.73 _refine.aniso_B[1][2] 3.33 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.353048 _refine.solvent_model_param_bsol 44.0469 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'pdb entry 1YRM' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1Z7F _refine_analyze.Luzzati_coordinate_error_obs 0.33 _refine_analyze.Luzzati_sigma_a_obs 0.27 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.41 _refine_analyze.Luzzati_sigma_a_free 0.32 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1008 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 1077 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 19.01 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.004 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 0.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 6.3 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.34 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 0.00 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 0.00 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.59 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.03 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.23 _refine_ls_shell.number_reflns_R_work 1163 _refine_ls_shell.R_factor_R_work 0.299 _refine_ls_shell.percent_reflns_obs 93.0 _refine_ls_shell.R_factor_R_free 0.328 _refine_ls_shell.R_factor_R_free_error 0.039 _refine_ls_shell.percent_reflns_R_free 5.8 _refine_ls_shell.number_reflns_R_free 71 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 2 DNA-RNA.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1Z7F _struct.title 'Crystal structure of 16 base pair RNA duplex containing a C-A mismatch' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Z7F _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, DUPLEX, MISMATCH' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? D SR . SR ? ? ? 1_555 F HOH . O ? ? A SR 17 A HOH 25 1_555 ? ? ? ? ? ? ? 2.750 ? ? metalc2 metalc ? ? D SR . SR ? ? ? 1_555 F HOH . O ? ? A SR 17 A HOH 25 6_765 ? ? ? ? ? ? ? 2.752 ? ? metalc3 metalc ? ? D SR . SR ? ? ? 1_555 F HOH . O ? ? A SR 17 A HOH 35 1_555 ? ? ? ? ? ? ? 2.777 ? ? metalc4 metalc ? ? D SR . SR ? ? ? 1_555 F HOH . O ? ? A SR 17 A HOH 35 6_765 ? ? ? ? ? ? ? 2.781 ? ? metalc5 metalc ? ? D SR . SR ? ? ? 1_555 F HOH . O ? ? A SR 17 A HOH 38 1_555 ? ? ? ? ? ? ? 2.644 ? ? metalc6 metalc ? ? D SR . SR ? ? ? 1_555 F HOH . O ? ? A SR 17 A HOH 38 6_765 ? ? ? ? ? ? ? 2.642 ? ? metalc7 metalc ? ? D SR . SR ? ? ? 1_555 F HOH . O ? ? A SR 17 A HOH 40 1_555 ? ? ? ? ? ? ? 2.713 ? ? metalc8 metalc ? ? D SR . SR ? ? ? 1_555 F HOH . O ? ? A SR 17 A HOH 40 6_765 ? ? ? ? ? ? ? 2.716 ? ? metalc9 metalc ? ? E SR . SR ? ? ? 1_555 C C 16 "O2'" ? ? C SR 2 C C 32 1_555 ? ? ? ? ? ? ? 2.642 ? ? metalc10 metalc ? ? E SR . SR ? ? ? 1_555 C C 16 "O3'" ? ? C SR 2 C C 32 1_555 ? ? ? ? ? ? ? 2.544 ? ? metalc11 metalc ? ? E SR . SR ? ? ? 1_555 H HOH . O ? ? C SR 2 C HOH 42 1_555 ? ? ? ? ? ? ? 2.620 ? ? metalc12 metalc ? ? E SR . SR ? ? ? 1_555 H HOH . O ? ? C SR 2 C HOH 52 1_555 ? ? ? ? ? ? ? 2.657 ? ? metalc13 metalc ? ? E SR . SR ? ? ? 1_555 H HOH . O ? ? C SR 2 C HOH 53 1_555 ? ? ? ? ? ? ? 2.554 ? ? hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 C C 16 N3 ? ? B G 1 C C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B G 1 N2 ? ? ? 1_555 C C 16 O2 ? ? B G 1 C C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 1 O6 ? ? ? 1_555 C C 16 N4 ? ? B G 1 C C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B C 2 N3 ? ? ? 1_555 C G 15 N1 ? ? B C 2 C G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B C 2 N4 ? ? ? 1_555 C G 15 O6 ? ? B C 2 C G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B C 2 O2 ? ? ? 1_555 C G 15 N2 ? ? B C 2 C G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B A 3 N1 ? ? ? 1_555 C U 14 N3 ? ? B A 3 C U 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B A 3 N6 ? ? ? 1_555 C U 14 O4 ? ? B A 3 C U 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B G 4 N1 ? ? ? 1_555 C C 13 N3 ? ? B G 4 C C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B G 4 N2 ? ? ? 1_555 C C 13 O2 ? ? B G 4 C C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B G 4 O6 ? ? ? 1_555 C C 13 N4 ? ? B G 4 C C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B A 5 N1 ? ? ? 1_555 C U 12 N3 ? ? B A 5 C U 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B A 5 N6 ? ? ? 1_555 C U 12 O4 ? ? B A 5 C U 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B C 6 O2 ? ? ? 1_555 C A 11 N6 ? ? B C 6 C A 27 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog15 hydrog ? ? B U 7 N3 ? ? ? 1_555 C A 10 N1 ? ? B U 7 C A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B U 7 O4 ? ? ? 1_555 C A 10 N6 ? ? B U 7 C A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B U 8 N3 ? ? ? 1_555 C A 9 N1 ? ? B U 8 C A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B U 8 O4 ? ? ? 1_555 C A 9 N6 ? ? B U 8 C A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B A 9 N1 ? ? ? 1_555 C U 8 N3 ? ? B A 9 C U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B A 9 N6 ? ? ? 1_555 C U 8 O4 ? ? B A 9 C U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B A 10 N1 ? ? ? 1_555 C U 7 N3 ? ? B A 10 C U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B A 10 N6 ? ? ? 1_555 C U 7 O4 ? ? B A 10 C U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B A 11 N6 ? ? ? 1_555 C C 6 O2 ? ? B A 11 C C 22 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog24 hydrog ? ? B U 12 N3 ? ? ? 1_555 C A 5 N1 ? ? B U 12 C A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B U 12 O4 ? ? ? 1_555 C A 5 N6 ? ? B U 12 C A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B C 13 N3 ? ? ? 1_555 C G 4 N1 ? ? B C 13 C G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B C 13 N4 ? ? ? 1_555 C G 4 O6 ? ? B C 13 C G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B C 13 O2 ? ? ? 1_555 C G 4 N2 ? ? B C 13 C G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B U 14 N3 ? ? ? 1_555 C A 3 N1 ? ? B U 14 C A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B U 14 O4 ? ? ? 1_555 C A 3 N6 ? ? B U 14 C A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B G 15 N1 ? ? ? 1_555 C C 2 N3 ? ? B G 15 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B G 15 N2 ? ? ? 1_555 C C 2 O2 ? ? B G 15 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B G 15 O6 ? ? ? 1_555 C C 2 N4 ? ? B G 15 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B C 16 N3 ? ? ? 1_555 C G 1 N1 ? ? B C 16 C G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B C 16 N4 ? ? ? 1_555 C G 1 O6 ? ? B C 16 C G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 16 O2 ? ? ? 1_555 C G 1 N2 ? ? B C 16 C G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 16 N3 ? ? A G 1 A C 16 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 16 O2 ? ? A G 1 A C 16 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 16 N4 ? ? A G 1 A C 16 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 15 N1 ? ? A C 2 A G 15 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 15 O6 ? ? A C 2 A G 15 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 15 N2 ? ? A C 2 A G 15 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 14 N3 ? ? A A 3 A U 14 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 14 O4 ? ? A A 3 A U 14 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 13 N3 ? ? A G 4 A C 13 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 13 O2 ? ? A G 4 A C 13 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 13 N4 ? ? A G 4 A C 13 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 12 N3 ? ? A A 5 A U 12 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 12 O4 ? ? A A 5 A U 12 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 6 O2 ? ? ? 1_555 A A 11 N6 ? ? A C 6 A A 11 6_765 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog51 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 10 N1 ? ? A U 7 A A 10 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 10 N6 ? ? A U 7 A A 10 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 9 N1 ? ? A U 8 A A 9 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 9 N6 ? ? A U 8 A A 9 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 8 N3 ? ? A A 9 A U 8 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 8 O4 ? ? A A 9 A U 8 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 7 N3 ? ? A A 10 A U 7 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 7 O4 ? ? A A 10 A U 7 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A A 11 N6 ? ? ? 1_555 A C 6 O2 ? ? A A 11 A C 6 6_765 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog60 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 5 N1 ? ? A U 12 A A 5 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 5 N6 ? ? A U 12 A A 5 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 4 N1 ? ? A C 13 A G 4 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 4 O6 ? ? A C 13 A G 4 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 4 N2 ? ? A C 13 A G 4 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 3 N1 ? ? A U 14 A A 3 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 3 N6 ? ? A U 14 A A 3 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 2 N3 ? ? A G 15 A C 2 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 2 O2 ? ? A G 15 A C 2 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 2 N4 ? ? A G 15 A C 2 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 1 N1 ? ? A C 16 A G 1 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 1 O6 ? ? A C 16 A G 1 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 1 N2 ? ? A C 16 A G 1 6_765 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SR 17 ? 8 'BINDING SITE FOR RESIDUE SR A 17' AC2 Software C SR 2 ? 4 'BINDING SITE FOR RESIDUE SR C 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 HOH F . ? HOH A 25 . ? 1_555 ? 2 AC1 8 HOH F . ? HOH A 25 . ? 6_765 ? 3 AC1 8 HOH F . ? HOH A 35 . ? 1_555 ? 4 AC1 8 HOH F . ? HOH A 35 . ? 6_765 ? 5 AC1 8 HOH F . ? HOH A 38 . ? 6_765 ? 6 AC1 8 HOH F . ? HOH A 38 . ? 1_555 ? 7 AC1 8 HOH F . ? HOH A 40 . ? 1_555 ? 8 AC1 8 HOH F . ? HOH A 40 . ? 6_765 ? 9 AC2 4 C C 16 ? C C 32 . ? 1_555 ? 10 AC2 4 HOH H . ? HOH C 42 . ? 1_555 ? 11 AC2 4 HOH H . ? HOH C 52 . ? 1_555 ? 12 AC2 4 HOH H . ? HOH C 53 . ? 1_555 ? # _database_PDB_matrix.entry_id 1Z7F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Z7F _atom_sites.fract_transf_matrix[1][1] 0.023256 _atom_sites.fract_transf_matrix[1][2] 0.013427 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026854 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008197 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SR # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G GUA A . n A 1 2 C 2 2 2 C CYT A . n A 1 3 A 3 3 3 A ADE A . n A 1 4 G 4 4 4 G GUA A . n A 1 5 A 5 5 5 A ADE A . n A 1 6 C 6 6 6 C CYT A . n A 1 7 U 7 7 7 U URI A . n A 1 8 U 8 8 8 U URI A . n A 1 9 A 9 9 9 A ADE A . n A 1 10 A 10 10 10 A ADE A . n A 1 11 A 11 11 11 A ADE A . n A 1 12 U 12 12 12 U URI A . n A 1 13 C 13 13 13 C CYT A . n A 1 14 U 14 14 14 U URI A . n A 1 15 G 15 15 15 G GUA A . n A 1 16 C 16 16 16 C CYT A . n B 1 1 G 1 1 1 G GUA B . n B 1 2 C 2 2 2 C CYT B . n B 1 3 A 3 3 3 A ADE B . n B 1 4 G 4 4 4 G GUA B . n B 1 5 A 5 5 5 A ADE B . n B 1 6 C 6 6 6 C CYT B . n B 1 7 U 7 7 7 U URI B . n B 1 8 U 8 8 8 U URI B . n B 1 9 A 9 9 9 A ADE B . n B 1 10 A 10 10 10 A ADE B . n B 1 11 A 11 11 11 A ADE B . n B 1 12 U 12 12 12 U URI B . n B 1 13 C 13 13 13 C CYT B . n B 1 14 U 14 14 14 U URI B . n B 1 15 G 15 15 15 G GUA B . n B 1 16 C 16 16 16 C CYT B . n C 1 1 G 1 17 17 G GUA C . n C 1 2 C 2 18 18 C CYT C . n C 1 3 A 3 19 19 A ADE C . n C 1 4 G 4 20 20 G GUA C . n C 1 5 A 5 21 21 A ADE C . n C 1 6 C 6 22 22 C CYT C . n C 1 7 U 7 23 23 U URI C . n C 1 8 U 8 24 24 U URI C . n C 1 9 A 9 25 25 A ADE C . n C 1 10 A 10 26 26 A ADE C . n C 1 11 A 11 27 27 A ADE C . n C 1 12 U 12 28 28 U URI C . n C 1 13 C 13 29 29 C CYT C . n C 1 14 U 14 30 30 U URI C . n C 1 15 G 15 31 31 G GUA C . n C 1 16 C 16 32 32 C CYT C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SR 1 17 1 SR SR A . E 2 SR 1 2 2 SR SR C . F 3 HOH 1 18 3 HOH HOH A . F 3 HOH 2 19 4 HOH HOH A . F 3 HOH 3 20 5 HOH HOH A . F 3 HOH 4 21 11 HOH HOH A . F 3 HOH 5 22 12 HOH HOH A . F 3 HOH 6 23 13 HOH HOH A . F 3 HOH 7 24 19 HOH HOH A . F 3 HOH 8 25 24 HOH HOH A . F 3 HOH 9 26 30 HOH HOH A . F 3 HOH 10 27 31 HOH HOH A . F 3 HOH 11 28 32 HOH HOH A . F 3 HOH 12 29 35 HOH HOH A . F 3 HOH 13 30 37 HOH HOH A . F 3 HOH 14 31 38 HOH HOH A . F 3 HOH 15 32 39 HOH HOH A . F 3 HOH 16 33 43 HOH HOH A . F 3 HOH 17 34 48 HOH HOH A . F 3 HOH 18 35 50 HOH HOH A . F 3 HOH 19 36 53 HOH HOH A . F 3 HOH 20 37 59 HOH HOH A . F 3 HOH 21 38 63 HOH HOH A . F 3 HOH 22 39 68 HOH HOH A . F 3 HOH 23 40 69 HOH HOH A . F 3 HOH 24 41 70 HOH HOH A . G 3 HOH 1 17 9 HOH HOH B . G 3 HOH 2 18 10 HOH HOH B . G 3 HOH 3 19 15 HOH HOH B . G 3 HOH 4 20 17 HOH HOH B . G 3 HOH 5 21 18 HOH HOH B . G 3 HOH 6 22 20 HOH HOH B . G 3 HOH 7 23 21 HOH HOH B . G 3 HOH 8 24 22 HOH HOH B . G 3 HOH 9 25 23 HOH HOH B . G 3 HOH 10 26 27 HOH HOH B . G 3 HOH 11 27 28 HOH HOH B . G 3 HOH 12 28 33 HOH HOH B . G 3 HOH 13 29 34 HOH HOH B . G 3 HOH 14 30 36 HOH HOH B . G 3 HOH 15 31 41 HOH HOH B . G 3 HOH 16 32 42 HOH HOH B . G 3 HOH 17 33 44 HOH HOH B . G 3 HOH 18 34 45 HOH HOH B . G 3 HOH 19 35 55 HOH HOH B . G 3 HOH 20 36 57 HOH HOH B . G 3 HOH 21 37 62 HOH HOH B . H 3 HOH 1 33 6 HOH HOH C . H 3 HOH 2 34 8 HOH HOH C . H 3 HOH 3 35 14 HOH HOH C . H 3 HOH 4 36 16 HOH HOH C . H 3 HOH 5 37 25 HOH HOH C . H 3 HOH 6 38 26 HOH HOH C . H 3 HOH 7 39 29 HOH HOH C . H 3 HOH 8 40 40 HOH HOH C . H 3 HOH 9 41 46 HOH HOH C . H 3 HOH 10 42 47 HOH HOH C . H 3 HOH 11 43 49 HOH HOH C . H 3 HOH 12 44 51 HOH HOH C . H 3 HOH 13 45 52 HOH HOH C . H 3 HOH 14 46 54 HOH HOH C . H 3 HOH 15 47 56 HOH HOH C . H 3 HOH 16 48 58 HOH HOH C . H 3 HOH 17 49 60 HOH HOH C . H 3 HOH 18 50 61 HOH HOH C . H 3 HOH 19 51 64 HOH HOH C . H 3 HOH 20 52 65 HOH HOH C . H 3 HOH 21 53 66 HOH HOH C . H 3 HOH 22 54 67 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,D,F 2 1 B,C,E,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 64.5000000000 -0.8660254038 0.5000000000 0.0000000000 37.2390923627 0.0000000000 0.0000000000 -1.0000000000 40.6666666667 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id SR _pdbx_struct_special_symmetry.auth_seq_id 17 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id SR _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? F HOH . ? A HOH 25 ? 1_555 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 25 ? 6_765 109.6 ? 2 O ? F HOH . ? A HOH 25 ? 1_555 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 35 ? 1_555 71.9 ? 3 O ? F HOH . ? A HOH 25 ? 6_765 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 35 ? 1_555 71.7 ? 4 O ? F HOH . ? A HOH 25 ? 1_555 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 35 ? 6_765 71.7 ? 5 O ? F HOH . ? A HOH 25 ? 6_765 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 35 ? 6_765 71.8 ? 6 O ? F HOH . ? A HOH 35 ? 1_555 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 35 ? 6_765 114.3 ? 7 O ? F HOH . ? A HOH 25 ? 1_555 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 38 ? 1_555 81.8 ? 8 O ? F HOH . ? A HOH 25 ? 6_765 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 38 ? 1_555 135.1 ? 9 O ? F HOH . ? A HOH 35 ? 1_555 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 38 ? 1_555 148.6 ? 10 O ? F HOH . ? A HOH 35 ? 6_765 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 38 ? 1_555 71.3 ? 11 O ? F HOH . ? A HOH 25 ? 1_555 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 38 ? 6_765 135.3 ? 12 O ? F HOH . ? A HOH 25 ? 6_765 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 38 ? 6_765 81.8 ? 13 O ? F HOH . ? A HOH 35 ? 1_555 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 38 ? 6_765 71.4 ? 14 O ? F HOH . ? A HOH 35 ? 6_765 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 38 ? 6_765 148.5 ? 15 O ? F HOH . ? A HOH 38 ? 1_555 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 38 ? 6_765 121.2 ? 16 O ? F HOH . ? A HOH 25 ? 1_555 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 40 ? 1_555 78.7 ? 17 O ? F HOH . ? A HOH 25 ? 6_765 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 40 ? 1_555 158.9 ? 18 O ? F HOH . ? A HOH 35 ? 1_555 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 40 ? 1_555 93.7 ? 19 O ? F HOH . ? A HOH 35 ? 6_765 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 40 ? 1_555 129.0 ? 20 O ? F HOH . ? A HOH 38 ? 1_555 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 40 ? 1_555 64.1 ? 21 O ? F HOH . ? A HOH 38 ? 6_765 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 40 ? 1_555 79.1 ? 22 O ? F HOH . ? A HOH 25 ? 1_555 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 40 ? 6_765 158.8 ? 23 O ? F HOH . ? A HOH 25 ? 6_765 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 40 ? 6_765 78.6 ? 24 O ? F HOH . ? A HOH 35 ? 1_555 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 40 ? 6_765 129.1 ? 25 O ? F HOH . ? A HOH 35 ? 6_765 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 40 ? 6_765 93.5 ? 26 O ? F HOH . ? A HOH 38 ? 1_555 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 40 ? 6_765 79.0 ? 27 O ? F HOH . ? A HOH 38 ? 6_765 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 40 ? 6_765 64.1 ? 28 O ? F HOH . ? A HOH 40 ? 1_555 SR ? D SR . ? A SR 17 ? 1_555 O ? F HOH . ? A HOH 40 ? 6_765 100.7 ? 29 "O2'" ? C C 16 ? C C 32 ? 1_555 SR ? E SR . ? C SR 2 ? 1_555 "O3'" ? C C 16 ? C C 32 ? 1_555 68.0 ? 30 "O2'" ? C C 16 ? C C 32 ? 1_555 SR ? E SR . ? C SR 2 ? 1_555 O ? H HOH . ? C HOH 42 ? 1_555 72.9 ? 31 "O3'" ? C C 16 ? C C 32 ? 1_555 SR ? E SR . ? C SR 2 ? 1_555 O ? H HOH . ? C HOH 42 ? 1_555 140.0 ? 32 "O2'" ? C C 16 ? C C 32 ? 1_555 SR ? E SR . ? C SR 2 ? 1_555 O ? H HOH . ? C HOH 52 ? 1_555 142.9 ? 33 "O3'" ? C C 16 ? C C 32 ? 1_555 SR ? E SR . ? C SR 2 ? 1_555 O ? H HOH . ? C HOH 52 ? 1_555 133.4 ? 34 O ? H HOH . ? C HOH 42 ? 1_555 SR ? E SR . ? C SR 2 ? 1_555 O ? H HOH . ? C HOH 52 ? 1_555 84.2 ? 35 "O2'" ? C C 16 ? C C 32 ? 1_555 SR ? E SR . ? C SR 2 ? 1_555 O ? H HOH . ? C HOH 53 ? 1_555 125.9 ? 36 "O3'" ? C C 16 ? C C 32 ? 1_555 SR ? E SR . ? C SR 2 ? 1_555 O ? H HOH . ? C HOH 53 ? 1_555 67.0 ? 37 O ? H HOH . ? C HOH 42 ? 1_555 SR ? E SR . ? C SR 2 ? 1_555 O ? H HOH . ? C HOH 53 ? 1_555 136.9 ? 38 O ? H HOH . ? C HOH 52 ? 1_555 SR ? E SR . ? C SR 2 ? 1_555 O ? H HOH . ? C HOH 53 ? 1_555 90.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-10-18 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-11-16 5 'Structure model' 1 4 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 17 5 'Structure model' '_pdbx_struct_conn_angle.value' 18 5 'Structure model' '_struct_conn.pdbx_dist_value' 19 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 20 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 22 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 23 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 29 5 'Structure model' '_struct_conn.ptnr2_symmetry' 30 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 CrystalClear 'data reduction' '(MSC/RIGAKU)' ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 SR SR SR N N 114 U OP3 O N N 115 U P P N N 116 U OP1 O N N 117 U OP2 O N N 118 U "O5'" O N N 119 U "C5'" C N N 120 U "C4'" C N R 121 U "O4'" O N N 122 U "C3'" C N S 123 U "O3'" O N N 124 U "C2'" C N R 125 U "O2'" O N N 126 U "C1'" C N R 127 U N1 N N N 128 U C2 C N N 129 U O2 O N N 130 U N3 N N N 131 U C4 C N N 132 U O4 O N N 133 U C5 C N N 134 U C6 C N N 135 U HOP3 H N N 136 U HOP2 H N N 137 U "H5'" H N N 138 U "H5''" H N N 139 U "H4'" H N N 140 U "H3'" H N N 141 U "HO3'" H N N 142 U "H2'" H N N 143 U "HO2'" H N N 144 U "H1'" H N N 145 U H3 H N N 146 U H5 H N N 147 U H6 H N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1Z7F 'double helix' 1Z7F 'a-form double helix' 1Z7F 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 C C 16 1_555 -0.294 -0.032 -0.092 -3.558 -9.813 0.441 1 B_G1:C32_C B 1 ? C 32 ? 19 1 1 B C 2 1_555 C G 15 1_555 0.567 -0.139 0.047 1.783 -18.161 3.152 2 B_C2:G31_C B 2 ? C 31 ? 19 1 1 B A 3 1_555 C U 14 1_555 -0.041 -0.120 0.214 -5.524 -7.211 3.302 3 B_A3:U30_C B 3 ? C 30 ? 20 1 1 B G 4 1_555 C C 13 1_555 -0.472 -0.209 -0.043 -3.257 -15.929 2.619 4 B_G4:C29_C B 4 ? C 29 ? 19 1 1 B A 5 1_555 C U 12 1_555 -0.036 -0.200 -0.029 -6.749 -14.873 3.807 5 B_A5:U28_C B 5 ? C 28 ? 20 1 1 B C 6 1_555 C A 11 1_555 3.237 -0.434 0.300 -5.880 -11.311 10.117 6 B_C6:A27_C B 6 ? C 27 ? ? 1 1 B U 7 1_555 C A 10 1_555 0.219 -0.263 0.045 0.242 -12.185 3.520 7 B_U7:A26_C B 7 ? C 26 ? 20 1 1 B U 8 1_555 C A 9 1_555 0.040 -0.203 0.054 1.824 -8.999 3.898 8 B_U8:A25_C B 8 ? C 25 ? 20 1 1 B A 9 1_555 C U 8 1_555 0.017 -0.102 0.056 -1.195 -15.816 7.772 9 B_A9:U24_C B 9 ? C 24 ? 20 1 1 B A 10 1_555 C U 7 1_555 0.031 -0.176 0.214 1.956 -9.719 -0.044 10 B_A10:U23_C B 10 ? C 23 ? 20 1 1 B A 11 1_555 C C 6 1_555 -3.009 -0.447 0.238 0.933 -16.203 12.849 11 B_A11:C22_C B 11 ? C 22 ? ? 1 1 B U 12 1_555 C A 5 1_555 0.393 -0.272 0.039 2.790 -8.704 5.957 12 B_U12:A21_C B 12 ? C 21 ? 20 1 1 B C 13 1_555 C G 4 1_555 0.175 -0.158 0.016 1.165 -13.688 1.423 13 B_C13:G20_C B 13 ? C 20 ? 19 1 1 B U 14 1_555 C A 3 1_555 -0.075 -0.308 -0.037 -3.494 -7.938 2.531 14 B_U14:A19_C B 14 ? C 19 ? 20 1 1 B G 15 1_555 C C 2 1_555 -0.153 -0.180 0.107 1.628 -8.193 3.718 15 B_G15:C18_C B 15 ? C 18 ? 19 1 1 B C 16 1_555 C G 1 1_555 0.357 -0.257 -0.182 9.250 -13.793 -1.295 16 B_C16:G17_C B 16 ? C 17 ? 19 1 1 A G 1 1_555 A C 16 6_765 -0.350 -0.234 -0.131 -8.598 -4.230 -1.002 17 A_G1:C16_A A 1 ? A 16 ? 19 1 1 A C 2 1_555 A G 15 6_765 0.392 -0.256 -0.113 1.300 -11.975 -0.660 18 A_C2:G15_A A 2 ? A 15 ? 19 1 1 A A 3 1_555 A U 14 6_765 -0.014 -0.084 -0.016 -1.621 -4.975 3.179 19 A_A3:U14_A A 3 ? A 14 ? 20 1 1 A G 4 1_555 A C 13 6_765 -0.334 -0.120 0.026 1.605 -7.947 -0.232 20 A_G4:C13_A A 4 ? A 13 ? 19 1 1 A A 5 1_555 A U 12 6_765 0.047 -0.193 -0.067 -5.541 -10.954 1.332 21 A_A5:U12_A A 5 ? A 12 ? 20 1 1 A C 6 1_555 A A 11 6_765 2.788 -0.455 -0.107 0.781 -14.604 4.153 22 A_C6:A11_A A 6 ? A 11 ? ? 1 1 A U 7 1_555 A A 10 6_765 0.107 -0.132 0.091 -3.165 -12.520 0.808 23 A_U7:A10_A A 7 ? A 10 ? 20 1 1 A U 8 1_555 A A 9 6_765 -0.125 -0.090 0.062 -0.094 -13.602 5.511 24 A_U8:A9_A A 8 ? A 9 ? 20 1 1 A A 9 1_555 A U 8 6_765 0.125 -0.090 0.062 0.094 -13.602 5.511 25 A_A9:U8_A A 9 ? A 8 ? 20 1 1 A A 10 1_555 A U 7 6_765 -0.107 -0.132 0.091 3.165 -12.520 0.808 26 A_A10:U7_A A 10 ? A 7 ? 20 1 1 A A 11 1_555 A C 6 6_765 -2.788 -0.455 -0.107 -0.781 -14.604 4.153 27 A_A11:C6_A A 11 ? A 6 ? ? 1 1 A U 12 1_555 A A 5 6_765 -0.047 -0.193 -0.067 5.541 -10.954 1.332 28 A_U12:A5_A A 12 ? A 5 ? 20 1 1 A C 13 1_555 A G 4 6_765 0.334 -0.120 0.026 -1.605 -7.947 -0.232 29 A_C13:G4_A A 13 ? A 4 ? 19 1 1 A U 14 1_555 A A 3 6_765 0.014 -0.084 -0.016 1.621 -4.975 3.179 30 A_U14:A3_A A 14 ? A 3 ? 20 1 1 A G 15 1_555 A C 2 6_765 -0.392 -0.256 -0.113 -1.300 -11.975 -0.660 31 A_G15:C2_A A 15 ? A 2 ? 19 1 1 A C 16 1_555 A G 1 6_765 0.350 -0.234 -0.131 8.598 -4.230 -1.002 32 A_C16:G1_A A 16 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 C C 16 1_555 B C 2 1_555 C G 15 1_555 -0.321 -1.074 3.121 -1.973 3.440 38.295 -2.031 0.257 3.029 5.227 2.998 38.492 1 BB_G1C2:G31C32_CC B 1 ? C 32 ? B 2 ? C 31 ? 1 B C 2 1_555 C G 15 1_555 B A 3 1_555 C U 14 1_555 -0.151 -1.320 3.164 -2.626 17.367 31.538 -4.298 -0.083 2.173 29.284 4.428 35.990 2 BB_C2A3:U30G31_CC B 2 ? C 31 ? B 3 ? C 30 ? 1 B A 3 1_555 C U 14 1_555 B G 4 1_555 C C 13 1_555 0.063 -1.507 3.168 2.174 8.536 28.302 -4.579 0.292 2.609 16.945 -4.317 29.615 3 BB_A3G4:C29U30_CC B 3 ? C 30 ? B 4 ? C 29 ? 1 B G 4 1_555 C C 13 1_555 B A 5 1_555 C U 12 1_555 0.843 -1.577 3.275 3.062 11.966 32.862 -4.297 -0.971 2.625 20.281 -5.190 35.047 4 BB_G4A5:U28C29_CC B 4 ? C 29 ? B 5 ? C 28 ? 1 B A 5 1_555 C U 12 1_555 B C 6 1_555 C A 11 1_555 0.605 -1.139 3.275 1.781 6.232 44.563 -2.039 -0.633 3.117 8.166 -2.334 45.008 5 BB_A5C6:A27U28_CC B 5 ? C 28 ? B 6 ? C 27 ? 1 B C 6 1_555 C A 11 1_555 B U 7 1_555 C A 10 1_555 -0.908 -2.083 2.814 2.674 7.128 16.361 -9.546 3.985 1.603 23.463 -8.802 18.035 6 BB_C6U7:A26A27_CC B 6 ? C 27 ? B 7 ? C 26 ? 1 B U 7 1_555 C A 10 1_555 B U 8 1_555 C A 9 1_555 -0.113 -1.411 3.270 -2.308 4.425 29.899 -3.565 -0.235 3.034 8.502 4.434 30.303 7 BB_U7U8:A25A26_CC B 7 ? C 26 ? B 8 ? C 25 ? 1 B U 8 1_555 C A 9 1_555 B A 9 1_555 C U 8 1_555 0.165 -1.345 3.108 0.312 13.946 32.481 -4.022 -0.232 2.353 23.620 -0.529 35.276 8 BB_U8A9:U24A25_CC B 8 ? C 25 ? B 9 ? C 24 ? 1 B A 9 1_555 C U 8 1_555 B A 10 1_555 C U 7 1_555 -0.826 -1.159 3.090 -1.786 9.861 33.418 -3.288 1.135 2.690 16.688 3.022 34.848 9 BB_A9A10:U23U24_CC B 9 ? C 24 ? B 10 ? C 23 ? 1 B A 10 1_555 C U 7 1_555 B A 11 1_555 C C 6 1_555 2.338 -2.131 3.025 4.387 12.913 13.805 -11.267 -5.266 1.273 42.472 -14.428 19.382 10 BB_A10A11:C22U23_CC B 10 ? C 23 ? B 11 ? C 22 ? 1 B A 11 1_555 C C 6 1_555 B U 12 1_555 C A 5 1_555 -0.204 -1.085 3.208 -1.826 8.736 43.866 -2.185 0.109 2.956 11.551 2.414 44.720 11 BB_A11U12:A21C22_CC B 11 ? C 22 ? B 12 ? C 21 ? 1 B U 12 1_555 C A 5 1_555 B C 13 1_555 C G 4 1_555 -0.522 -1.765 3.182 0.823 4.464 30.379 -4.151 1.136 2.885 8.460 -1.560 30.708 12 BB_U12C13:G20A21_CC B 12 ? C 21 ? B 13 ? C 20 ? 1 B C 13 1_555 C G 4 1_555 B U 14 1_555 C A 3 1_555 -0.743 -1.137 3.291 -0.816 11.057 29.335 -4.088 1.230 2.714 20.915 1.544 31.318 13 BB_C13U14:A19G20_CC B 13 ? C 20 ? B 14 ? C 19 ? 1 B U 14 1_555 C A 3 1_555 B G 15 1_555 C C 2 1_555 0.412 -1.263 3.005 -1.310 10.023 31.051 -3.745 -0.930 2.470 18.130 2.369 32.616 14 BB_U14G15:C18A19_CC B 14 ? C 19 ? B 15 ? C 18 ? 1 B G 15 1_555 C C 2 1_555 B C 16 1_555 C G 1 1_555 0.330 -1.707 3.047 5.307 -0.424 36.604 -2.638 0.152 3.082 -0.671 -8.396 36.977 15 BB_G15C16:G17C18_CC B 15 ? C 18 ? B 16 ? C 17 ? 1 A G 1 1_555 A C 16 6_765 A C 2 1_555 A G 15 6_765 -0.253 -1.643 3.027 -0.034 3.391 34.550 -3.222 0.419 2.858 5.692 0.057 34.710 16 AA_G1C2:G15C16_AA A 1 ? A 16 ? A 2 ? A 15 ? 1 A C 2 1_555 A G 15 6_765 A A 3 1_555 A U 14 6_765 0.364 -1.668 3.215 -0.544 10.379 30.338 -4.710 -0.748 2.515 19.139 1.003 32.029 17 AA_C2A3:U14G15_AA A 2 ? A 15 ? A 3 ? A 14 ? 1 A A 3 1_555 A U 14 6_765 A G 4 1_555 A C 13 6_765 -0.217 -1.506 3.125 -0.652 6.876 28.929 -4.240 0.298 2.707 13.521 1.282 29.724 18 AA_A3G4:C13U14_AA A 3 ? A 14 ? A 4 ? A 13 ? 1 A G 4 1_555 A C 13 6_765 A A 5 1_555 A U 12 6_765 -0.195 -1.785 3.381 0.005 13.022 35.255 -4.382 0.304 2.585 20.650 -0.007 37.511 19 AA_G4A5:U12C13_AA A 4 ? A 13 ? A 5 ? A 12 ? 1 A A 5 1_555 A U 12 6_765 A C 6 1_555 A A 11 6_765 0.273 -1.098 3.114 3.488 7.980 41.890 -2.247 -0.051 2.880 11.019 -4.816 42.746 20 AA_A5C6:A11U12_AA A 5 ? A 12 ? A 6 ? A 11 ? 1 A C 6 1_555 A A 11 6_765 A U 7 1_555 A A 10 6_765 -0.021 -1.892 3.042 2.079 14.568 19.907 -7.735 0.523 1.351 36.394 -5.195 24.711 21 AA_C6U7:A10A11_AA A 6 ? A 11 ? A 7 ? A 10 ? 1 A U 7 1_555 A A 10 6_765 A U 8 1_555 A A 9 6_765 0.224 -1.297 3.084 -0.346 6.701 31.925 -3.363 -0.453 2.760 12.017 0.620 32.604 22 AA_U7U8:A9A10_AA A 7 ? A 10 ? A 8 ? A 9 ? 1 A U 8 1_555 A A 9 6_765 A A 9 1_555 A U 8 6_765 0.000 -1.333 3.025 0.000 14.196 34.219 -3.728 0.000 2.310 22.942 0.000 36.965 23 AA_U8A9:U8A9_AA A 8 ? A 9 ? A 9 ? A 8 ? 1 A A 9 1_555 A U 8 6_765 A A 10 1_555 A U 7 6_765 -0.224 -1.297 3.084 0.346 6.701 31.925 -3.363 0.453 2.760 12.017 -0.620 32.604 24 AA_A9A10:U7U8_AA A 9 ? A 8 ? A 10 ? A 7 ? 1 A A 10 1_555 A U 7 6_765 A A 11 1_555 A C 6 6_765 0.021 -1.892 3.042 -2.079 14.568 19.907 -7.735 -0.523 1.351 36.394 5.195 24.711 25 AA_A10A11:C6U7_AA A 10 ? A 7 ? A 11 ? A 6 ? 1 A A 11 1_555 A C 6 6_765 A U 12 1_555 A A 5 6_765 -0.273 -1.098 3.114 -3.488 7.980 41.890 -2.247 0.051 2.880 11.019 4.816 42.746 26 AA_A11U12:A5C6_AA A 11 ? A 6 ? A 12 ? A 5 ? 1 A U 12 1_555 A A 5 6_765 A C 13 1_555 A G 4 6_765 0.195 -1.785 3.381 -0.005 13.022 35.255 -4.382 -0.304 2.585 20.650 0.007 37.511 27 AA_U12C13:G4A5_AA A 12 ? A 5 ? A 13 ? A 4 ? 1 A C 13 1_555 A G 4 6_765 A U 14 1_555 A A 3 6_765 0.217 -1.506 3.125 0.652 6.876 28.929 -4.240 -0.298 2.707 13.521 -1.282 29.724 28 AA_C13U14:A3G4_AA A 13 ? A 4 ? A 14 ? A 3 ? 1 A U 14 1_555 A A 3 6_765 A G 15 1_555 A C 2 6_765 -0.364 -1.668 3.215 0.544 10.379 30.338 -4.710 0.748 2.515 19.139 -1.003 32.029 29 AA_U14G15:C2A3_AA A 14 ? A 3 ? A 15 ? A 2 ? 1 A G 15 1_555 A C 2 6_765 A C 16 1_555 A G 1 6_765 0.253 -1.643 3.027 0.034 3.391 34.550 -3.222 -0.419 2.858 5.692 -0.057 34.711 30 AA_G15C16:G1C2_AA A 15 ? A 2 ? A 16 ? A 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'STRONTIUM ION' SR 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1YRM _pdbx_initial_refinement_model.details 'pdb entry 1YRM' #