data_1Z7U # _entry.id 1Z7U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1Z7U RCSB RCSB032407 WWPDB D_1000032407 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC28846 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Z7U _pdbx_database_status.recvd_initial_deposition_date 2005-03-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, Y.' 1 'Wu, R.' 2 'Collart, F.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Crystal Structure of the Putitive Transcriptional Regulator of MarR Family from Enterococcus faecalis' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kim, Y.' 1 primary 'Wu, R.' 2 primary 'Collart, F.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 1Z7U _cell.length_a 63.754 _cell.length_b 63.754 _cell.length_c 139.271 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Z7U _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein EF0647' 13010.175 2 ? ? ? ? 2 non-polymer syn 'FORMIC ACID' 46.025 1 ? ? ? ? 3 water nat water 18.015 195 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'putative transcriptional regulator' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)TTDKQTSINLALSTINGKWKLSL(MSE)DELFQGTKRNGEL(MSE)RALDGITQRVLTDRLRE(MSE)EKDG LVHRESFNELPPRVEYTLTPEGYALYDALSSLCHWGETFAQKKARLNK ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMTTDKQTSINLALSTINGKWKLSLMDELFQGTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEY TLTPEGYALYDALSSLCHWGETFAQKKARLNK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC28846 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 THR n 1 6 THR n 1 7 ASP n 1 8 LYS n 1 9 GLN n 1 10 THR n 1 11 SER n 1 12 ILE n 1 13 ASN n 1 14 LEU n 1 15 ALA n 1 16 LEU n 1 17 SER n 1 18 THR n 1 19 ILE n 1 20 ASN n 1 21 GLY n 1 22 LYS n 1 23 TRP n 1 24 LYS n 1 25 LEU n 1 26 SER n 1 27 LEU n 1 28 MSE n 1 29 ASP n 1 30 GLU n 1 31 LEU n 1 32 PHE n 1 33 GLN n 1 34 GLY n 1 35 THR n 1 36 LYS n 1 37 ARG n 1 38 ASN n 1 39 GLY n 1 40 GLU n 1 41 LEU n 1 42 MSE n 1 43 ARG n 1 44 ALA n 1 45 LEU n 1 46 ASP n 1 47 GLY n 1 48 ILE n 1 49 THR n 1 50 GLN n 1 51 ARG n 1 52 VAL n 1 53 LEU n 1 54 THR n 1 55 ASP n 1 56 ARG n 1 57 LEU n 1 58 ARG n 1 59 GLU n 1 60 MSE n 1 61 GLU n 1 62 LYS n 1 63 ASP n 1 64 GLY n 1 65 LEU n 1 66 VAL n 1 67 HIS n 1 68 ARG n 1 69 GLU n 1 70 SER n 1 71 PHE n 1 72 ASN n 1 73 GLU n 1 74 LEU n 1 75 PRO n 1 76 PRO n 1 77 ARG n 1 78 VAL n 1 79 GLU n 1 80 TYR n 1 81 THR n 1 82 LEU n 1 83 THR n 1 84 PRO n 1 85 GLU n 1 86 GLY n 1 87 TYR n 1 88 ALA n 1 89 LEU n 1 90 TYR n 1 91 ASP n 1 92 ALA n 1 93 LEU n 1 94 SER n 1 95 SER n 1 96 LEU n 1 97 CYS n 1 98 HIS n 1 99 TRP n 1 100 GLY n 1 101 GLU n 1 102 THR n 1 103 PHE n 1 104 ALA n 1 105 GLN n 1 106 LYS n 1 107 LYS n 1 108 ALA n 1 109 ARG n 1 110 LEU n 1 111 ASN n 1 112 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Enterococcus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Enterococcus faecalis' _entity_src_gen.gene_src_strain V583 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Enterococcus faecalis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 226185 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21DE3 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q838C3_ENTFA _struct_ref.pdbx_db_accession Q838C3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTTDKQTSINLALSTINGKWKLSLMDELFQGTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLT PEGYALYDALSSLCHWGETFAQKKARLNK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1Z7U A 4 ? 112 ? Q838C3 1 ? 109 ? 1 109 2 1 1Z7U B 4 ? 112 ? Q838C3 1 ? 109 ? 1 109 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1Z7U SER A 1 ? UNP Q838C3 ? ? 'CLONING ARTIFACT' -2 1 1 1Z7U ASN A 2 ? UNP Q838C3 ? ? 'CLONING ARTIFACT' -1 2 1 1Z7U ALA A 3 ? UNP Q838C3 ? ? 'CLONING ARTIFACT' 0 3 1 1Z7U MSE A 4 ? UNP Q838C3 MET 1 'MODIFIED RESIDUE' 1 4 1 1Z7U MSE A 28 ? UNP Q838C3 MET 25 'MODIFIED RESIDUE' 25 5 1 1Z7U MSE A 42 ? UNP Q838C3 MET 39 'MODIFIED RESIDUE' 39 6 1 1Z7U MSE A 60 ? UNP Q838C3 MET 57 'MODIFIED RESIDUE' 57 7 2 1Z7U SER B 1 ? UNP Q838C3 ? ? 'CLONING ARTIFACT' -2 8 2 1Z7U ASN B 2 ? UNP Q838C3 ? ? 'CLONING ARTIFACT' -1 9 2 1Z7U ALA B 3 ? UNP Q838C3 ? ? 'CLONING ARTIFACT' 0 10 2 1Z7U MSE B 4 ? UNP Q838C3 MET 1 'MODIFIED RESIDUE' 1 11 2 1Z7U MSE B 28 ? UNP Q838C3 MET 25 'MODIFIED RESIDUE' 25 12 2 1Z7U MSE B 42 ? UNP Q838C3 MET 39 'MODIFIED RESIDUE' 39 13 2 1Z7U MSE B 60 ? UNP Q838C3 MET 57 'MODIFIED RESIDUE' 57 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1Z7U _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.2 _exptl_crystal.density_percent_sol 61.5 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'BIS-TRIS-PROPANE, potassium sodium tartrate tetrahydrated, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-3 _diffrn_detector.pdbx_collection_date 2005-03-17 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 # _reflns.entry_id 1Z7U _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 57.93 _reflns.d_resolution_high 2.2 _reflns.number_obs 14767 _reflns.number_all 15317 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.095 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 11.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 79.7 _reflns_shell.Rmerge_I_obs 0.482 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.pdbx_redundancy 5.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1Z7U _refine.ls_number_reflns_obs 13228 _refine.ls_number_reflns_all 13228 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 57.93 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 96.28 _refine.ls_R_factor_obs 0.21027 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20465 _refine.ls_R_factor_R_free 0.26126 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 1480 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.900 _refine.B_iso_mean 31.428 _refine.aniso_B[1][1] -0.37 _refine.aniso_B[2][2] -0.37 _refine.aniso_B[3][3] 0.74 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.318 _refine.pdbx_overall_ESU_R_Free 0.242 _refine.overall_SU_ML 0.164 _refine.overall_SU_B 12.149 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1768 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 195 _refine_hist.number_atoms_total 1966 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 57.93 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 1984 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.268 1.965 ? 2694 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.063 5.000 ? 255 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.836 23.663 ? 101 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.322 15.000 ? 381 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.739 15.000 ? 22 'X-RAY DIFFRACTION' ? r_chiral_restr 0.090 0.200 ? 289 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1544 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.206 0.200 ? 876 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.178 0.200 ? 172 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.206 0.200 ? 58 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.119 0.200 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.922 1.500 ? 1247 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.144 2.000 ? 1954 'X-RAY DIFFRACTION' ? r_scbond_it 1.894 3.000 ? 832 'X-RAY DIFFRACTION' ? r_scangle_it 2.919 4.500 ? 740 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_R_work 748 _refine_ls_shell.R_factor_R_work 0.246 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.32 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 97 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1Z7U _struct.title 'Crystal Structure of the Putitive Transcriptional Regulator of MarR Family from Enterococcus faecalis V583' _struct.pdbx_descriptor 'hypothetical protein EF0647' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Z7U _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;winged-helix-turn-helix, MarR, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 7 ? THR A 18 ? ASP A 4 THR A 15 1 ? 12 HELX_P HELX_P2 2 TRP A 23 ? GLY A 34 ? TRP A 20 GLY A 31 1 ? 12 HELX_P HELX_P3 3 ARG A 37 ? LEU A 45 ? ARG A 34 LEU A 42 1 ? 9 HELX_P HELX_P4 4 THR A 49 ? ASP A 63 ? THR A 46 ASP A 60 1 ? 15 HELX_P HELX_P5 5 THR A 83 ? ASN A 111 ? THR A 80 ASN A 108 1 ? 29 HELX_P HELX_P6 6 ASP B 7 ? ASN B 20 ? ASP B 4 ASN B 17 1 ? 14 HELX_P HELX_P7 7 TRP B 23 ? PHE B 32 ? TRP B 20 PHE B 29 1 ? 10 HELX_P HELX_P8 8 ARG B 37 ? LEU B 45 ? ARG B 34 LEU B 42 1 ? 9 HELX_P HELX_P9 9 THR B 49 ? ASP B 63 ? THR B 46 ASP B 60 1 ? 15 HELX_P HELX_P10 10 THR B 83 ? LEU B 110 ? THR B 80 LEU B 107 1 ? 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 3 C ? ? ? 1_555 A MSE 4 N ? ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? A MSE 4 C ? ? ? 1_555 A THR 5 N ? ? A MSE 1 A THR 2 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? A LEU 27 C ? ? ? 1_555 A MSE 28 N ? ? A LEU 24 A MSE 25 1_555 ? ? ? ? ? ? ? 1.332 ? covale4 covale ? ? A MSE 28 C ? ? ? 1_555 A ASP 29 N ? ? A MSE 25 A ASP 26 1_555 ? ? ? ? ? ? ? 1.340 ? covale5 covale ? ? A LEU 41 C ? ? ? 1_555 A MSE 42 N ? ? A LEU 38 A MSE 39 1_555 ? ? ? ? ? ? ? 1.336 ? covale6 covale ? ? A MSE 42 C ? ? ? 1_555 A ARG 43 N ? ? A MSE 39 A ARG 40 1_555 ? ? ? ? ? ? ? 1.333 ? covale7 covale ? ? A GLU 59 C ? ? ? 1_555 A MSE 60 N ? ? A GLU 56 A MSE 57 1_555 ? ? ? ? ? ? ? 1.332 ? covale8 covale ? ? A MSE 60 C ? ? ? 1_555 A GLU 61 N ? ? A MSE 57 A GLU 58 1_555 ? ? ? ? ? ? ? 1.333 ? covale9 covale ? ? B ALA 3 C ? ? ? 1_555 B MSE 4 N ? ? B ALA 0 B MSE 1 1_555 ? ? ? ? ? ? ? 1.332 ? covale10 covale ? ? B MSE 4 C ? ? ? 1_555 B THR 5 N ? ? B MSE 1 B THR 2 1_555 ? ? ? ? ? ? ? 1.330 ? covale11 covale ? ? B LEU 27 C ? ? ? 1_555 B MSE 28 N ? ? B LEU 24 B MSE 25 1_555 ? ? ? ? ? ? ? 1.330 ? covale12 covale ? ? B MSE 28 C ? ? ? 1_555 B ASP 29 N ? ? B MSE 25 B ASP 26 1_555 ? ? ? ? ? ? ? 1.332 ? covale13 covale ? ? B LEU 41 C ? ? ? 1_555 B MSE 42 N ? ? B LEU 38 B MSE 39 1_555 ? ? ? ? ? ? ? 1.323 ? covale14 covale ? ? B MSE 42 C ? ? ? 1_555 B ARG 43 N ? ? B MSE 39 B ARG 40 1_555 ? ? ? ? ? ? ? 1.331 ? covale15 covale ? ? B GLU 59 C ? ? ? 1_555 B MSE 60 N ? ? B GLU 56 B MSE 57 1_555 ? ? ? ? ? ? ? 1.327 ? covale16 covale ? ? B MSE 60 C ? ? ? 1_555 B GLU 61 N ? ? B MSE 57 B GLU 58 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LEU 74 A . ? LEU 71 A PRO 75 A ? PRO 72 A 1 -0.37 2 LEU 74 B . ? LEU 71 B PRO 75 B ? PRO 72 B 1 -2.11 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 66 ? PHE A 71 ? VAL A 63 PHE A 68 A 2 ARG A 77 ? LEU A 82 ? ARG A 74 LEU A 79 B 1 VAL B 66 ? PHE B 71 ? VAL B 63 PHE B 68 B 2 ARG B 77 ? LEU B 82 ? ARG B 74 LEU B 79 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 71 ? N PHE A 68 O ARG A 77 ? O ARG A 74 B 1 2 N HIS B 67 ? N HIS B 64 O THR B 81 ? O THR B 78 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE FMT A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 GLU A 59 ? GLU A 56 . ? 1_555 ? 2 AC1 2 ASP A 63 ? ASP A 60 . ? 1_555 ? # _database_PDB_matrix.entry_id 1Z7U _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Z7U _atom_sites.fract_transf_matrix[1][1] 0.015685 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015685 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007180 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 -2 SER SER A . n A 1 2 ASN 2 -1 -1 ASN ASN A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 THR 5 2 2 THR THR A . n A 1 6 THR 6 3 3 THR THR A . n A 1 7 ASP 7 4 4 ASP ASP A . n A 1 8 LYS 8 5 5 LYS LYS A . n A 1 9 GLN 9 6 6 GLN GLN A . n A 1 10 THR 10 7 7 THR THR A . n A 1 11 SER 11 8 8 SER SER A . n A 1 12 ILE 12 9 9 ILE ILE A . n A 1 13 ASN 13 10 10 ASN ASN A . n A 1 14 LEU 14 11 11 LEU LEU A . n A 1 15 ALA 15 12 12 ALA ALA A . n A 1 16 LEU 16 13 13 LEU LEU A . n A 1 17 SER 17 14 14 SER SER A . n A 1 18 THR 18 15 15 THR THR A . n A 1 19 ILE 19 16 16 ILE ILE A . n A 1 20 ASN 20 17 17 ASN ASN A . n A 1 21 GLY 21 18 18 GLY GLY A . n A 1 22 LYS 22 19 19 LYS LYS A . n A 1 23 TRP 23 20 20 TRP TRP A . n A 1 24 LYS 24 21 21 LYS LYS A . n A 1 25 LEU 25 22 22 LEU LEU A . n A 1 26 SER 26 23 23 SER SER A . n A 1 27 LEU 27 24 24 LEU LEU A . n A 1 28 MSE 28 25 25 MSE MSE A . n A 1 29 ASP 29 26 26 ASP ASP A . n A 1 30 GLU 30 27 27 GLU GLU A . n A 1 31 LEU 31 28 28 LEU LEU A . n A 1 32 PHE 32 29 29 PHE PHE A . n A 1 33 GLN 33 30 30 GLN GLN A . n A 1 34 GLY 34 31 31 GLY GLY A . n A 1 35 THR 35 32 32 THR THR A . n A 1 36 LYS 36 33 33 LYS LYS A . n A 1 37 ARG 37 34 34 ARG ARG A . n A 1 38 ASN 38 35 35 ASN ASN A . n A 1 39 GLY 39 36 36 GLY GLY A . n A 1 40 GLU 40 37 37 GLU GLU A . n A 1 41 LEU 41 38 38 LEU LEU A . n A 1 42 MSE 42 39 39 MSE MSE A . n A 1 43 ARG 43 40 40 ARG ARG A . n A 1 44 ALA 44 41 41 ALA ALA A . n A 1 45 LEU 45 42 42 LEU LEU A . n A 1 46 ASP 46 43 43 ASP ASP A . n A 1 47 GLY 47 44 44 GLY GLY A . n A 1 48 ILE 48 45 45 ILE ILE A . n A 1 49 THR 49 46 46 THR THR A . n A 1 50 GLN 50 47 47 GLN GLN A . n A 1 51 ARG 51 48 48 ARG ARG A . n A 1 52 VAL 52 49 49 VAL VAL A . n A 1 53 LEU 53 50 50 LEU LEU A . n A 1 54 THR 54 51 51 THR THR A . n A 1 55 ASP 55 52 52 ASP ASP A . n A 1 56 ARG 56 53 53 ARG ARG A . n A 1 57 LEU 57 54 54 LEU LEU A . n A 1 58 ARG 58 55 55 ARG ARG A . n A 1 59 GLU 59 56 56 GLU GLU A . n A 1 60 MSE 60 57 57 MSE MSE A . n A 1 61 GLU 61 58 58 GLU GLU A . n A 1 62 LYS 62 59 59 LYS LYS A . n A 1 63 ASP 63 60 60 ASP ASP A . n A 1 64 GLY 64 61 61 GLY GLY A . n A 1 65 LEU 65 62 62 LEU LEU A . n A 1 66 VAL 66 63 63 VAL VAL A . n A 1 67 HIS 67 64 64 HIS HIS A . n A 1 68 ARG 68 65 65 ARG ARG A . n A 1 69 GLU 69 66 66 GLU GLU A . n A 1 70 SER 70 67 67 SER SER A . n A 1 71 PHE 71 68 68 PHE PHE A . n A 1 72 ASN 72 69 69 ASN ASN A . n A 1 73 GLU 73 70 70 GLU GLU A . n A 1 74 LEU 74 71 71 LEU LEU A . n A 1 75 PRO 75 72 72 PRO PRO A . n A 1 76 PRO 76 73 73 PRO PRO A . n A 1 77 ARG 77 74 74 ARG ARG A . n A 1 78 VAL 78 75 75 VAL VAL A . n A 1 79 GLU 79 76 76 GLU GLU A . n A 1 80 TYR 80 77 77 TYR TYR A . n A 1 81 THR 81 78 78 THR THR A . n A 1 82 LEU 82 79 79 LEU LEU A . n A 1 83 THR 83 80 80 THR THR A . n A 1 84 PRO 84 81 81 PRO PRO A . n A 1 85 GLU 85 82 82 GLU GLU A . n A 1 86 GLY 86 83 83 GLY GLY A . n A 1 87 TYR 87 84 84 TYR TYR A . n A 1 88 ALA 88 85 85 ALA ALA A . n A 1 89 LEU 89 86 86 LEU LEU A . n A 1 90 TYR 90 87 87 TYR TYR A . n A 1 91 ASP 91 88 88 ASP ASP A . n A 1 92 ALA 92 89 89 ALA ALA A . n A 1 93 LEU 93 90 90 LEU LEU A . n A 1 94 SER 94 91 91 SER SER A . n A 1 95 SER 95 92 92 SER SER A . n A 1 96 LEU 96 93 93 LEU LEU A . n A 1 97 CYS 97 94 94 CYS CYS A . n A 1 98 HIS 98 95 95 HIS HIS A . n A 1 99 TRP 99 96 96 TRP TRP A . n A 1 100 GLY 100 97 97 GLY GLY A . n A 1 101 GLU 101 98 98 GLU GLU A . n A 1 102 THR 102 99 99 THR THR A . n A 1 103 PHE 103 100 100 PHE PHE A . n A 1 104 ALA 104 101 101 ALA ALA A . n A 1 105 GLN 105 102 102 GLN GLN A . n A 1 106 LYS 106 103 103 LYS LYS A . n A 1 107 LYS 107 104 104 LYS LYS A . n A 1 108 ALA 108 105 105 ALA ALA A . n A 1 109 ARG 109 106 106 ARG ARG A . n A 1 110 LEU 110 107 107 LEU LEU A . n A 1 111 ASN 111 108 108 ASN ASN A . n A 1 112 LYS 112 109 ? ? ? A . n B 1 1 SER 1 -2 -2 SER SER B . n B 1 2 ASN 2 -1 -1 ASN ASN B . n B 1 3 ALA 3 0 0 ALA ALA B . n B 1 4 MSE 4 1 1 MSE MSE B . n B 1 5 THR 5 2 2 THR THR B . n B 1 6 THR 6 3 3 THR THR B . n B 1 7 ASP 7 4 4 ASP ASP B . n B 1 8 LYS 8 5 5 LYS LYS B . n B 1 9 GLN 9 6 6 GLN GLN B . n B 1 10 THR 10 7 7 THR THR B . n B 1 11 SER 11 8 8 SER SER B . n B 1 12 ILE 12 9 9 ILE ILE B . n B 1 13 ASN 13 10 10 ASN ASN B . n B 1 14 LEU 14 11 11 LEU LEU B . n B 1 15 ALA 15 12 12 ALA ALA B . n B 1 16 LEU 16 13 13 LEU LEU B . n B 1 17 SER 17 14 14 SER SER B . n B 1 18 THR 18 15 15 THR THR B . n B 1 19 ILE 19 16 16 ILE ILE B . n B 1 20 ASN 20 17 17 ASN ASN B . n B 1 21 GLY 21 18 18 GLY GLY B . n B 1 22 LYS 22 19 19 LYS LYS B . n B 1 23 TRP 23 20 20 TRP TRP B . n B 1 24 LYS 24 21 21 LYS LYS B . n B 1 25 LEU 25 22 22 LEU LEU B . n B 1 26 SER 26 23 23 SER SER B . n B 1 27 LEU 27 24 24 LEU LEU B . n B 1 28 MSE 28 25 25 MSE MSE B . n B 1 29 ASP 29 26 26 ASP ASP B . n B 1 30 GLU 30 27 27 GLU GLU B . n B 1 31 LEU 31 28 28 LEU LEU B . n B 1 32 PHE 32 29 29 PHE PHE B . n B 1 33 GLN 33 30 30 GLN GLN B . n B 1 34 GLY 34 31 31 GLY GLY B . n B 1 35 THR 35 32 32 THR THR B . n B 1 36 LYS 36 33 33 LYS LYS B . n B 1 37 ARG 37 34 34 ARG ARG B . n B 1 38 ASN 38 35 35 ASN ASN B . n B 1 39 GLY 39 36 36 GLY GLY B . n B 1 40 GLU 40 37 37 GLU GLU B . n B 1 41 LEU 41 38 38 LEU LEU B . n B 1 42 MSE 42 39 39 MSE MSE B . n B 1 43 ARG 43 40 40 ARG ARG B . n B 1 44 ALA 44 41 41 ALA ALA B . n B 1 45 LEU 45 42 42 LEU LEU B . n B 1 46 ASP 46 43 43 ASP ASP B . n B 1 47 GLY 47 44 44 GLY GLY B . n B 1 48 ILE 48 45 45 ILE ILE B . n B 1 49 THR 49 46 46 THR THR B . n B 1 50 GLN 50 47 47 GLN GLN B . n B 1 51 ARG 51 48 48 ARG ARG B . n B 1 52 VAL 52 49 49 VAL VAL B . n B 1 53 LEU 53 50 50 LEU LEU B . n B 1 54 THR 54 51 51 THR THR B . n B 1 55 ASP 55 52 52 ASP ASP B . n B 1 56 ARG 56 53 53 ARG ARG B . n B 1 57 LEU 57 54 54 LEU LEU B . n B 1 58 ARG 58 55 55 ARG ARG B . n B 1 59 GLU 59 56 56 GLU GLU B . n B 1 60 MSE 60 57 57 MSE MSE B . n B 1 61 GLU 61 58 58 GLU GLU B . n B 1 62 LYS 62 59 59 LYS LYS B . n B 1 63 ASP 63 60 60 ASP ASP B . n B 1 64 GLY 64 61 61 GLY GLY B . n B 1 65 LEU 65 62 62 LEU LEU B . n B 1 66 VAL 66 63 63 VAL VAL B . n B 1 67 HIS 67 64 64 HIS HIS B . n B 1 68 ARG 68 65 65 ARG ARG B . n B 1 69 GLU 69 66 66 GLU GLU B . n B 1 70 SER 70 67 67 SER SER B . n B 1 71 PHE 71 68 68 PHE PHE B . n B 1 72 ASN 72 69 69 ASN ASN B . n B 1 73 GLU 73 70 70 GLU GLU B . n B 1 74 LEU 74 71 71 LEU LEU B . n B 1 75 PRO 75 72 72 PRO PRO B . n B 1 76 PRO 76 73 73 PRO PRO B . n B 1 77 ARG 77 74 74 ARG ARG B . n B 1 78 VAL 78 75 75 VAL VAL B . n B 1 79 GLU 79 76 76 GLU GLU B . n B 1 80 TYR 80 77 77 TYR TYR B . n B 1 81 THR 81 78 78 THR THR B . n B 1 82 LEU 82 79 79 LEU LEU B . n B 1 83 THR 83 80 80 THR THR B . n B 1 84 PRO 84 81 81 PRO PRO B . n B 1 85 GLU 85 82 82 GLU GLU B . n B 1 86 GLY 86 83 83 GLY GLY B . n B 1 87 TYR 87 84 84 TYR TYR B . n B 1 88 ALA 88 85 85 ALA ALA B . n B 1 89 LEU 89 86 86 LEU LEU B . n B 1 90 TYR 90 87 87 TYR TYR B . n B 1 91 ASP 91 88 88 ASP ASP B . n B 1 92 ALA 92 89 89 ALA ALA B . n B 1 93 LEU 93 90 90 LEU LEU B . n B 1 94 SER 94 91 91 SER SER B . n B 1 95 SER 95 92 92 SER SER B . n B 1 96 LEU 96 93 93 LEU LEU B . n B 1 97 CYS 97 94 94 CYS CYS B . n B 1 98 HIS 98 95 95 HIS HIS B . n B 1 99 TRP 99 96 96 TRP TRP B . n B 1 100 GLY 100 97 97 GLY GLY B . n B 1 101 GLU 101 98 98 GLU GLU B . n B 1 102 THR 102 99 99 THR THR B . n B 1 103 PHE 103 100 100 PHE PHE B . n B 1 104 ALA 104 101 101 ALA ALA B . n B 1 105 GLN 105 102 102 GLN GLN B . n B 1 106 LYS 106 103 103 LYS LYS B . n B 1 107 LYS 107 104 104 LYS LYS B . n B 1 108 ALA 108 105 105 ALA ALA B . n B 1 109 ARG 109 106 106 ARG ARG B . n B 1 110 LEU 110 107 107 LEU LEU B . n B 1 111 ASN 111 108 ? ? ? B . n B 1 112 LYS 112 109 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 28 A MSE 25 ? MET SELENOMETHIONINE 3 A MSE 42 A MSE 39 ? MET SELENOMETHIONINE 4 A MSE 60 A MSE 57 ? MET SELENOMETHIONINE 5 B MSE 4 B MSE 1 ? MET SELENOMETHIONINE 6 B MSE 28 B MSE 25 ? MET SELENOMETHIONINE 7 B MSE 42 B MSE 39 ? MET SELENOMETHIONINE 8 B MSE 60 B MSE 57 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3310 ? 1 MORE -26 ? 1 'SSA (A^2)' 13030 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-05-10 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0000 ? 1 SBC-Collect 'data collection' . ? 2 HKL-2000 'data scaling' . ? 3 HKL-3000 phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 20 ? ? 79.82 -19.34 2 1 ASN A 69 ? B -67.15 73.34 3 1 TRP B 20 ? ? 82.78 -26.22 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 109 ? A LYS 112 2 1 Y 1 B ASN 108 ? B ASN 111 3 1 Y 1 B LYS 109 ? B LYS 112 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FORMIC ACID' FMT 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMT 1 201 201 FMT FMT A . D 3 HOH 1 202 1 HOH HOH A . D 3 HOH 2 203 2 HOH HOH A . D 3 HOH 3 204 6 HOH HOH A . D 3 HOH 4 205 7 HOH HOH A . D 3 HOH 5 206 8 HOH HOH A . D 3 HOH 6 207 10 HOH HOH A . D 3 HOH 7 208 13 HOH HOH A . D 3 HOH 8 209 14 HOH HOH A . D 3 HOH 9 210 16 HOH HOH A . D 3 HOH 10 211 18 HOH HOH A . D 3 HOH 11 212 21 HOH HOH A . D 3 HOH 12 213 22 HOH HOH A . D 3 HOH 13 214 25 HOH HOH A . D 3 HOH 14 215 26 HOH HOH A . D 3 HOH 15 216 33 HOH HOH A . D 3 HOH 16 217 36 HOH HOH A . D 3 HOH 17 218 37 HOH HOH A . D 3 HOH 18 219 39 HOH HOH A . D 3 HOH 19 220 41 HOH HOH A . D 3 HOH 20 221 42 HOH HOH A . D 3 HOH 21 222 43 HOH HOH A . D 3 HOH 22 223 44 HOH HOH A . D 3 HOH 23 224 46 HOH HOH A . D 3 HOH 24 225 47 HOH HOH A . D 3 HOH 25 226 51 HOH HOH A . D 3 HOH 26 227 52 HOH HOH A . D 3 HOH 27 228 53 HOH HOH A . D 3 HOH 28 229 56 HOH HOH A . D 3 HOH 29 230 59 HOH HOH A . D 3 HOH 30 231 63 HOH HOH A . D 3 HOH 31 232 64 HOH HOH A . D 3 HOH 32 233 65 HOH HOH A . D 3 HOH 33 234 67 HOH HOH A . D 3 HOH 34 235 68 HOH HOH A . D 3 HOH 35 236 71 HOH HOH A . D 3 HOH 36 237 72 HOH HOH A . D 3 HOH 37 238 74 HOH HOH A . D 3 HOH 38 239 76 HOH HOH A . D 3 HOH 39 240 77 HOH HOH A . D 3 HOH 40 241 78 HOH HOH A . D 3 HOH 41 242 79 HOH HOH A . D 3 HOH 42 243 80 HOH HOH A . D 3 HOH 43 244 83 HOH HOH A . D 3 HOH 44 245 86 HOH HOH A . D 3 HOH 45 246 87 HOH HOH A . D 3 HOH 46 247 89 HOH HOH A . D 3 HOH 47 248 90 HOH HOH A . D 3 HOH 48 249 91 HOH HOH A . D 3 HOH 49 250 93 HOH HOH A . D 3 HOH 50 251 94 HOH HOH A . D 3 HOH 51 252 98 HOH HOH A . D 3 HOH 52 253 100 HOH HOH A . D 3 HOH 53 254 101 HOH HOH A . D 3 HOH 54 255 103 HOH HOH A . D 3 HOH 55 256 104 HOH HOH A . D 3 HOH 56 257 105 HOH HOH A . D 3 HOH 57 258 107 HOH HOH A . D 3 HOH 58 259 109 HOH HOH A . D 3 HOH 59 260 110 HOH HOH A . D 3 HOH 60 261 112 HOH HOH A . D 3 HOH 61 262 117 HOH HOH A . D 3 HOH 62 263 118 HOH HOH A . D 3 HOH 63 264 119 HOH HOH A . D 3 HOH 64 265 120 HOH HOH A . D 3 HOH 65 266 122 HOH HOH A . D 3 HOH 66 267 123 HOH HOH A . D 3 HOH 67 268 124 HOH HOH A . D 3 HOH 68 269 126 HOH HOH A . D 3 HOH 69 270 128 HOH HOH A . D 3 HOH 70 271 130 HOH HOH A . D 3 HOH 71 272 131 HOH HOH A . D 3 HOH 72 273 137 HOH HOH A . D 3 HOH 73 274 142 HOH HOH A . D 3 HOH 74 275 146 HOH HOH A . D 3 HOH 75 276 147 HOH HOH A . D 3 HOH 76 277 148 HOH HOH A . D 3 HOH 77 278 151 HOH HOH A . D 3 HOH 78 279 152 HOH HOH A . D 3 HOH 79 280 160 HOH HOH A . D 3 HOH 80 281 165 HOH HOH A . D 3 HOH 81 282 166 HOH HOH A . D 3 HOH 82 283 167 HOH HOH A . D 3 HOH 83 284 175 HOH HOH A . D 3 HOH 84 285 176 HOH HOH A . D 3 HOH 85 286 177 HOH HOH A . D 3 HOH 86 287 178 HOH HOH A . D 3 HOH 87 288 179 HOH HOH A . D 3 HOH 88 289 180 HOH HOH A . D 3 HOH 89 290 182 HOH HOH A . D 3 HOH 90 291 183 HOH HOH A . D 3 HOH 91 292 193 HOH HOH A . D 3 HOH 92 293 194 HOH HOH A . E 3 HOH 1 110 3 HOH HOH B . E 3 HOH 2 111 4 HOH HOH B . E 3 HOH 3 112 5 HOH HOH B . E 3 HOH 4 113 9 HOH HOH B . E 3 HOH 5 114 11 HOH HOH B . E 3 HOH 6 115 12 HOH HOH B . E 3 HOH 7 116 15 HOH HOH B . E 3 HOH 8 117 17 HOH HOH B . E 3 HOH 9 118 19 HOH HOH B . E 3 HOH 10 119 20 HOH HOH B . E 3 HOH 11 120 23 HOH HOH B . E 3 HOH 12 121 24 HOH HOH B . E 3 HOH 13 122 27 HOH HOH B . E 3 HOH 14 123 28 HOH HOH B . E 3 HOH 15 124 29 HOH HOH B . E 3 HOH 16 125 30 HOH HOH B . E 3 HOH 17 126 31 HOH HOH B . E 3 HOH 18 127 32 HOH HOH B . E 3 HOH 19 128 34 HOH HOH B . E 3 HOH 20 129 35 HOH HOH B . E 3 HOH 21 130 38 HOH HOH B . E 3 HOH 22 131 40 HOH HOH B . E 3 HOH 23 132 45 HOH HOH B . E 3 HOH 24 133 48 HOH HOH B . E 3 HOH 25 134 49 HOH HOH B . E 3 HOH 26 135 50 HOH HOH B . E 3 HOH 27 136 54 HOH HOH B . E 3 HOH 28 137 55 HOH HOH B . E 3 HOH 29 138 57 HOH HOH B . E 3 HOH 30 139 58 HOH HOH B . E 3 HOH 31 140 60 HOH HOH B . E 3 HOH 32 141 61 HOH HOH B . E 3 HOH 33 142 62 HOH HOH B . E 3 HOH 34 143 66 HOH HOH B . E 3 HOH 35 144 69 HOH HOH B . E 3 HOH 36 145 70 HOH HOH B . E 3 HOH 37 146 73 HOH HOH B . E 3 HOH 38 147 75 HOH HOH B . E 3 HOH 39 148 81 HOH HOH B . E 3 HOH 40 149 82 HOH HOH B . E 3 HOH 41 150 84 HOH HOH B . E 3 HOH 42 151 85 HOH HOH B . E 3 HOH 43 152 88 HOH HOH B . E 3 HOH 44 153 92 HOH HOH B . E 3 HOH 45 154 95 HOH HOH B . E 3 HOH 46 155 96 HOH HOH B . E 3 HOH 47 156 97 HOH HOH B . E 3 HOH 48 157 99 HOH HOH B . E 3 HOH 49 158 102 HOH HOH B . E 3 HOH 50 159 106 HOH HOH B . E 3 HOH 51 160 108 HOH HOH B . E 3 HOH 52 161 111 HOH HOH B . E 3 HOH 53 162 113 HOH HOH B . E 3 HOH 54 163 114 HOH HOH B . E 3 HOH 55 164 115 HOH HOH B . E 3 HOH 56 165 116 HOH HOH B . E 3 HOH 57 166 121 HOH HOH B . E 3 HOH 58 167 125 HOH HOH B . E 3 HOH 59 168 127 HOH HOH B . E 3 HOH 60 169 129 HOH HOH B . E 3 HOH 61 170 132 HOH HOH B . E 3 HOH 62 171 133 HOH HOH B . E 3 HOH 63 172 134 HOH HOH B . E 3 HOH 64 173 135 HOH HOH B . E 3 HOH 65 174 136 HOH HOH B . E 3 HOH 66 175 138 HOH HOH B . E 3 HOH 67 176 139 HOH HOH B . E 3 HOH 68 177 140 HOH HOH B . E 3 HOH 69 178 141 HOH HOH B . E 3 HOH 70 179 143 HOH HOH B . E 3 HOH 71 180 144 HOH HOH B . E 3 HOH 72 181 145 HOH HOH B . E 3 HOH 73 182 149 HOH HOH B . E 3 HOH 74 183 150 HOH HOH B . E 3 HOH 75 184 153 HOH HOH B . E 3 HOH 76 185 154 HOH HOH B . E 3 HOH 77 186 155 HOH HOH B . E 3 HOH 78 187 156 HOH HOH B . E 3 HOH 79 188 157 HOH HOH B . E 3 HOH 80 189 158 HOH HOH B . E 3 HOH 81 190 159 HOH HOH B . E 3 HOH 82 191 161 HOH HOH B . E 3 HOH 83 192 162 HOH HOH B . E 3 HOH 84 193 163 HOH HOH B . E 3 HOH 85 194 164 HOH HOH B . E 3 HOH 86 195 168 HOH HOH B . E 3 HOH 87 196 169 HOH HOH B . E 3 HOH 88 197 170 HOH HOH B . E 3 HOH 89 198 171 HOH HOH B . E 3 HOH 90 199 172 HOH HOH B . E 3 HOH 91 200 173 HOH HOH B . E 3 HOH 92 201 174 HOH HOH B . E 3 HOH 93 202 181 HOH HOH B . E 3 HOH 94 203 184 HOH HOH B . E 3 HOH 95 204 185 HOH HOH B . E 3 HOH 96 205 186 HOH HOH B . E 3 HOH 97 206 187 HOH HOH B . E 3 HOH 98 207 188 HOH HOH B . E 3 HOH 99 208 189 HOH HOH B . E 3 HOH 100 209 190 HOH HOH B . E 3 HOH 101 210 191 HOH HOH B . E 3 HOH 102 211 192 HOH HOH B . E 3 HOH 103 212 195 HOH HOH B . #