HEADER ISOMERASE 30-MAR-05 1Z8K TITLE X-RAY STRUCTURE OF ALLENE OXIDE CYCLASE FROM ARABIDOPSIS THALIANA TITLE 2 AT3G25770 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AT3G25770 PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 5.3.99.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT3G25770; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP-27 KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, CESG, KEYWDS 2 AT3G25770, CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, JASMONIC ACID KEYWDS 3 BIOSYNTHESIS, PLANT PROTEIN, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.E.WESENBERG,G.N.PHILLIPS JR.,E.BITTO,C.A.BINGMAN,S.T.M.ALLARD, AUTHOR 2 CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 7 30-OCT-24 1Z8K 1 SEQADV LINK REVDAT 6 11-OCT-17 1Z8K 1 REMARK REVDAT 5 13-JUL-11 1Z8K 1 VERSN REVDAT 4 24-FEB-09 1Z8K 1 VERSN REVDAT 3 12-FEB-08 1Z8K 1 REMARK REVDAT 2 26-APR-05 1Z8K 1 SOURCE REVDAT 1 12-APR-05 1Z8K 0 JRNL AUTH CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) JRNL TITL X-RAY STRUCTURE OF ALLENE OXIDE CYCLASE FROM ARABIDOPSIS JRNL TITL 2 THALIANA AT3G25770 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 70173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3725 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5062 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.1700 REMARK 3 BIN FREE R VALUE SET COUNT : 261 REMARK 3 BIN FREE R VALUE : 0.2010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4092 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 741 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.51000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.419 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4233 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5747 ; 1.394 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 519 ; 6.463 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;30.567 ;24.611 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 707 ;12.324 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ; 9.110 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 632 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3215 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2004 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2956 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 630 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.154 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 56 ; 0.215 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2653 ; 1.220 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4204 ; 2.059 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1778 ; 3.420 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1543 ; 4.931 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: INITIAL MODEL GENERATED BY ARP/WARP, REMARK 3 SELENIUM C COEFFICIENT FOR STRUCTURE FACTOR CALCULATION SET TO - REMARK 3 9.0000, MOLPROBITY USED TO ASSIST IN FINAL MODEL BUILDING. REMARK 4 REMARK 4 1Z8K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032433. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924, 0.97156, 0.97947 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED SI (220) REMARK 200 DOUBLE BOUNCE REMARK 200 OPTICS : HORIZONTAL SAGITALLY FOCUSING REMARK 200 2ND BENT MONOCHROMATOR CRYSTAL, REMARK 200 VERTICAL BENT FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73976 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 48.166 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9950 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.40 REMARK 200 R MERGE FOR SHELL (I) : 0.25200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.811 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.08, RESOLVE 2.08 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, 11% PEG 8K, 0.100 M REMARK 280 SODIUM ACETATE, PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.20600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.69300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.00650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.69300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.20600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.00650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 ARG A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 GLN A 9 REMARK 465 ASN A 10 REMARK 465 GLY A 11 REMARK 465 ASN A 12 REMARK 465 ILE A 13 REMARK 465 GLU A 14 REMARK 465 ASN A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 PRO A 18 REMARK 465 SER A 19 REMARK 465 SER B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 ARG B 5 REMARK 465 ALA B 6 REMARK 465 LEU B 7 REMARK 465 SER B 8 REMARK 465 GLN B 9 REMARK 465 ASN B 10 REMARK 465 GLY B 11 REMARK 465 ASN B 12 REMARK 465 ILE B 13 REMARK 465 GLU B 14 REMARK 465 ASN B 15 REMARK 465 PRO B 16 REMARK 465 ARG B 17 REMARK 465 PRO B 18 REMARK 465 SER B 19 REMARK 465 SER C 1 REMARK 465 THR C 2 REMARK 465 ALA C 3 REMARK 465 SER C 4 REMARK 465 ARG C 5 REMARK 465 ALA C 6 REMARK 465 LEU C 7 REMARK 465 SER C 8 REMARK 465 GLN C 9 REMARK 465 ASN C 10 REMARK 465 GLY C 11 REMARK 465 ASN C 12 REMARK 465 ILE C 13 REMARK 465 GLU C 14 REMARK 465 ASN C 15 REMARK 465 PRO C 16 REMARK 465 ARG C 17 REMARK 465 PRO C 18 REMARK 465 SER C 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 407 O HOH C 206 1.83 REMARK 500 O HOH A 259 O HOH A 394 1.96 REMARK 500 O HOH B 290 O HOH B 427 1.96 REMARK 500 O HOH A 407 O HOH B 212 2.08 REMARK 500 O HOH B 224 O HOH C 430 2.10 REMARK 500 O HOH A 277 O HOH A 303 2.15 REMARK 500 O HOH A 292 O HOH B 392 2.19 REMARK 500 O HOH C 357 O HOH C 384 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 419 O HOH B 225 4455 1.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 89 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.15839 RELATED DB: TARGETDB DBREF 1Z8K A 2 193 UNP Q9LS02 AOC2_ARATH 62 253 DBREF 1Z8K B 2 193 UNP Q9LS02 AOC2_ARATH 62 253 DBREF 1Z8K C 2 193 UNP Q9LS02 AOC2_ARATH 62 253 SEQADV 1Z8K SER A 1 UNP Q9LS02 CLONING ARTIFACT SEQADV 1Z8K MSE A 47 UNP Q9LS02 MET 107 MODIFIED RESIDUE SEQADV 1Z8K SER B 1 UNP Q9LS02 CLONING ARTIFACT SEQADV 1Z8K MSE B 47 UNP Q9LS02 MET 107 MODIFIED RESIDUE SEQADV 1Z8K SER C 1 UNP Q9LS02 CLONING ARTIFACT SEQADV 1Z8K MSE C 47 UNP Q9LS02 MET 107 MODIFIED RESIDUE SEQRES 1 A 193 SER THR ALA SER ARG ALA LEU SER GLN ASN GLY ASN ILE SEQRES 2 A 193 GLU ASN PRO ARG PRO SER LYS VAL GLN GLU LEU SER VAL SEQRES 3 A 193 TYR GLU ILE ASN GLU LEU ASP ARG HIS SER PRO LYS ILE SEQRES 4 A 193 LEU LYS ASN ALA PHE SER LEU MSE PHE GLY LEU GLY ASP SEQRES 5 A 193 LEU VAL PRO PHE THR ASN LYS LEU TYR THR GLY ASP LEU SEQRES 6 A 193 LYS LYS ARG VAL GLY ILE THR ALA GLY LEU CYS VAL VAL SEQRES 7 A 193 ILE GLU HIS VAL PRO GLU LYS LYS GLY GLU ARG PHE GLU SEQRES 8 A 193 ALA THR TYR SER PHE TYR PHE GLY ASP TYR GLY HIS LEU SEQRES 9 A 193 SER VAL GLN GLY PRO TYR LEU THR TYR GLU ASP SER PHE SEQRES 10 A 193 LEU ALA ILE THR GLY GLY ALA GLY ILE PHE GLU GLY ALA SEQRES 11 A 193 TYR GLY GLN VAL LYS LEU GLN GLN LEU VAL TYR PRO THR SEQRES 12 A 193 LYS LEU PHE TYR THR PHE TYR LEU LYS GLY LEU ALA ASN SEQRES 13 A 193 ASP LEU PRO LEU GLU LEU THR GLY THR PRO VAL PRO PRO SEQRES 14 A 193 SER LYS ASP ILE GLU PRO ALA PRO GLU ALA LYS ALA LEU SEQRES 15 A 193 GLU PRO SER GLY VAL ILE SER ASN TYR THR ASN SEQRES 1 B 193 SER THR ALA SER ARG ALA LEU SER GLN ASN GLY ASN ILE SEQRES 2 B 193 GLU ASN PRO ARG PRO SER LYS VAL GLN GLU LEU SER VAL SEQRES 3 B 193 TYR GLU ILE ASN GLU LEU ASP ARG HIS SER PRO LYS ILE SEQRES 4 B 193 LEU LYS ASN ALA PHE SER LEU MSE PHE GLY LEU GLY ASP SEQRES 5 B 193 LEU VAL PRO PHE THR ASN LYS LEU TYR THR GLY ASP LEU SEQRES 6 B 193 LYS LYS ARG VAL GLY ILE THR ALA GLY LEU CYS VAL VAL SEQRES 7 B 193 ILE GLU HIS VAL PRO GLU LYS LYS GLY GLU ARG PHE GLU SEQRES 8 B 193 ALA THR TYR SER PHE TYR PHE GLY ASP TYR GLY HIS LEU SEQRES 9 B 193 SER VAL GLN GLY PRO TYR LEU THR TYR GLU ASP SER PHE SEQRES 10 B 193 LEU ALA ILE THR GLY GLY ALA GLY ILE PHE GLU GLY ALA SEQRES 11 B 193 TYR GLY GLN VAL LYS LEU GLN GLN LEU VAL TYR PRO THR SEQRES 12 B 193 LYS LEU PHE TYR THR PHE TYR LEU LYS GLY LEU ALA ASN SEQRES 13 B 193 ASP LEU PRO LEU GLU LEU THR GLY THR PRO VAL PRO PRO SEQRES 14 B 193 SER LYS ASP ILE GLU PRO ALA PRO GLU ALA LYS ALA LEU SEQRES 15 B 193 GLU PRO SER GLY VAL ILE SER ASN TYR THR ASN SEQRES 1 C 193 SER THR ALA SER ARG ALA LEU SER GLN ASN GLY ASN ILE SEQRES 2 C 193 GLU ASN PRO ARG PRO SER LYS VAL GLN GLU LEU SER VAL SEQRES 3 C 193 TYR GLU ILE ASN GLU LEU ASP ARG HIS SER PRO LYS ILE SEQRES 4 C 193 LEU LYS ASN ALA PHE SER LEU MSE PHE GLY LEU GLY ASP SEQRES 5 C 193 LEU VAL PRO PHE THR ASN LYS LEU TYR THR GLY ASP LEU SEQRES 6 C 193 LYS LYS ARG VAL GLY ILE THR ALA GLY LEU CYS VAL VAL SEQRES 7 C 193 ILE GLU HIS VAL PRO GLU LYS LYS GLY GLU ARG PHE GLU SEQRES 8 C 193 ALA THR TYR SER PHE TYR PHE GLY ASP TYR GLY HIS LEU SEQRES 9 C 193 SER VAL GLN GLY PRO TYR LEU THR TYR GLU ASP SER PHE SEQRES 10 C 193 LEU ALA ILE THR GLY GLY ALA GLY ILE PHE GLU GLY ALA SEQRES 11 C 193 TYR GLY GLN VAL LYS LEU GLN GLN LEU VAL TYR PRO THR SEQRES 12 C 193 LYS LEU PHE TYR THR PHE TYR LEU LYS GLY LEU ALA ASN SEQRES 13 C 193 ASP LEU PRO LEU GLU LEU THR GLY THR PRO VAL PRO PRO SEQRES 14 C 193 SER LYS ASP ILE GLU PRO ALA PRO GLU ALA LYS ALA LEU SEQRES 15 C 193 GLU PRO SER GLY VAL ILE SER ASN TYR THR ASN MODRES 1Z8K MSE A 47 MET SELENOMETHIONINE MODRES 1Z8K MSE B 47 MET SELENOMETHIONINE MODRES 1Z8K MSE C 47 MET SELENOMETHIONINE HET MSE A 47 14 HET MSE B 47 8 HET MSE C 47 11 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 4 HOH *741(H2 O) HELIX 1 1 PRO A 83 LYS A 86 5 4 HELIX 2 2 PRO A 159 THR A 163 5 5 HELIX 3 3 ALA A 176 ALA A 181 1 6 HELIX 4 4 GLU A 183 VAL A 187 5 5 HELIX 5 5 PRO B 83 LYS B 86 5 4 HELIX 6 6 PRO B 159 THR B 163 5 5 HELIX 7 7 ALA B 176 ALA B 181 1 6 HELIX 8 8 GLU B 183 VAL B 187 5 5 HELIX 9 9 PRO C 83 LYS C 86 5 4 HELIX 10 10 PRO C 159 THR C 163 5 5 HELIX 11 11 ALA C 176 ALA C 181 1 6 HELIX 12 12 GLU C 183 VAL C 187 5 5 SHEET 1 A10 LEU A 53 PHE A 56 0 SHEET 2 A10 ARG A 68 VAL A 82 -1 O CYS A 76 N VAL A 54 SHEET 3 A10 GLY A 87 TYR A 97 -1 O TYR A 97 N ILE A 71 SHEET 4 A10 GLY A 102 LEU A 111 -1 O GLY A 108 N ALA A 92 SHEET 5 A10 SER A 116 GLY A 125 -1 O GLY A 122 N SER A 105 SHEET 6 A10 TYR A 131 VAL A 140 -1 O LEU A 136 N SER A 116 SHEET 7 A10 LYS A 144 LYS A 152 -1 O LYS A 144 N VAL A 140 SHEET 8 A10 GLN A 22 ILE A 29 -1 N LEU A 24 O PHE A 149 SHEET 9 A10 LYS A 59 THR A 62 -1 O TYR A 61 N TYR A 27 SHEET 10 A10 ARG A 68 VAL A 82 -1 O VAL A 69 N LEU A 60 SHEET 1 B10 LEU B 53 PHE B 56 0 SHEET 2 B10 ARG B 68 VAL B 82 -1 O CYS B 76 N VAL B 54 SHEET 3 B10 GLY B 87 TYR B 97 -1 O TYR B 97 N ILE B 71 SHEET 4 B10 GLY B 102 LEU B 111 -1 O GLY B 108 N ALA B 92 SHEET 5 B10 SER B 116 GLY B 125 -1 O GLY B 122 N SER B 105 SHEET 6 B10 TYR B 131 VAL B 140 -1 O LEU B 136 N SER B 116 SHEET 7 B10 LYS B 144 LYS B 152 -1 O LYS B 144 N LEU B 139 SHEET 8 B10 GLN B 22 ILE B 29 -1 N LEU B 24 O PHE B 149 SHEET 9 B10 LYS B 59 THR B 62 -1 O TYR B 61 N TYR B 27 SHEET 10 B10 ARG B 68 VAL B 82 -1 O GLY B 70 N LEU B 60 SHEET 1 C10 LEU C 53 PHE C 56 0 SHEET 2 C10 ARG C 68 VAL C 82 -1 O CYS C 76 N VAL C 54 SHEET 3 C10 GLY C 87 TYR C 97 -1 O GLY C 87 N VAL C 82 SHEET 4 C10 GLY C 102 LEU C 111 -1 O GLY C 108 N ALA C 92 SHEET 5 C10 SER C 116 GLY C 125 -1 O GLY C 122 N SER C 105 SHEET 6 C10 TYR C 131 VAL C 140 -1 O LEU C 136 N SER C 116 SHEET 7 C10 LYS C 144 LYS C 152 -1 O LYS C 144 N LEU C 139 SHEET 8 C10 GLN C 22 ILE C 29 -1 N LEU C 24 O PHE C 149 SHEET 9 C10 LYS C 59 THR C 62 -1 O TYR C 61 N TYR C 27 SHEET 10 C10 ARG C 68 VAL C 82 -1 O GLY C 70 N LEU C 60 LINK C LEU A 46 N MSE A 47 1555 1555 1.33 LINK C MSE A 47 N PHE A 48 1555 1555 1.33 LINK C LEU B 46 N MSE B 47 1555 1555 1.33 LINK C MSE B 47 N PHE B 48 1555 1555 1.34 LINK C LEU C 46 N MSE C 47 1555 1555 1.34 LINK C MSE C 47 N PHE C 48 1555 1555 1.33 CISPEP 1 SER A 36 PRO A 37 0 -3.74 CISPEP 2 TYR A 141 PRO A 142 0 -9.63 CISPEP 3 SER B 36 PRO B 37 0 1.68 CISPEP 4 TYR B 141 PRO B 142 0 -6.31 CISPEP 5 SER C 36 PRO C 37 0 -2.82 CISPEP 6 TYR C 141 PRO C 142 0 -11.24 CRYST1 64.412 100.013 105.386 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015530 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009490 0.00000