HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 31-MAR-05 1Z90 TITLE X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT3G03250, A TITLE 2 PUTATIVE UDP-GLUCOSE PYROPHOSPHORYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AT3G03250 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT3G03250; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP-17 KEYWDS AT3G03250, PUTATIVE UDP-GLUCOSE PYROPHOSPHORYLASE, STRUCTURAL KEYWDS 2 GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, CESG, CENTER FOR KEYWDS 3 EUKARYOTIC STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR G.E.WESENBERG,G.N.PHILLIPS JR.,E.BITTO,C.A.BINGMAN,S.T.M.ALLARD, AUTHOR 2 CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 7 14-FEB-24 1Z90 1 REMARK REVDAT 6 11-OCT-17 1Z90 1 REMARK REVDAT 5 24-FEB-09 1Z90 1 VERSN REVDAT 4 12-FEB-08 1Z90 1 REMARK REVDAT 3 20-FEB-07 1Z90 1 JRNL REVDAT 2 26-APR-05 1Z90 1 SOURCE REVDAT 1 12-APR-05 1Z90 0 JRNL AUTH J.G.MCCOY,E.BITTO,C.A.BINGMAN,G.E.WESENBERG,R.M.BANNEN, JRNL AUTH 2 D.A.KONDRASHOV,G.N.PHILLIPS JR. JRNL TITL STRUCTURE AND DYNAMICS OF UDP-GLUCOSE PYROPHOSPHORYLASE FROM JRNL TITL 2 ARABIDOPSIS THALIANA WITH BOUND UDP-GLUCOSE AND UTP. JRNL REF J.MOL.BIOL. V. 366 830 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17178129 JRNL DOI 10.1016/J.JMB.2006.11.059 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 75518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3986 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4926 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 259 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7122 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 421 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.156 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.600 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7257 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 10 ; 0.097 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9841 ; 1.607 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18 ;16.409 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 911 ; 6.359 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 296 ;36.434 ;25.946 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1322 ;16.783 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.450 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1153 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5340 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 6 ; 0.033 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3445 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 11 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4979 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 10 ; 0.288 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 445 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 70 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.214 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4694 ; 1.730 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4 ; 0.411 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7439 ; 2.948 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2888 ; 4.837 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2402 ; 6.843 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: INITIAL MODEL GENERATED BY ARP/WARP, REMARK 3 MOLPROBITY USED TO ASSIST IN FINAL MODEL BUILDING REMARK 4 REMARK 4 1Z90 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-05; 13-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 22-BM; 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99997; 0.97924 REMARK 200 MONOCHROMATOR : WATER COOLED SI (111) DOUBLE REMARK 200 BOUNCE; CRYOGENICALLY COOLED SI REMARK 200 (220) DOUBLE BOUNCE REMARK 200 OPTICS : HORIZONTAL SAGITALLY FOCUSING REMARK 200 2ND BENT MONOCHROMATOR CRYSTAL, REMARK 200 VERTICAL BENT FOCUSING MIRROR; REMARK 200 HORIZONTAL SAGITALLY FOCUSING REMARK 200 2ND BENT MONOCHROMATOR CRYSTAL, REMARK 200 VERTICAL BENT FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; MARMOSAIC REMARK 200 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79505 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.863 REMARK 200 RESOLUTION RANGE LOW (A) : 37.365 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.3770 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.39500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.224 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CNS, RESOLVE 2.06, PHENIX (HYSS) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 MG/ML PROTEIN, 30% PEG2K, 0.100M REMARK 280 MES/ACETATE, 5% DMSO, VAPOR DIFFUSION, HANGING DROP, PH 5.5, REMARK 280 TEMPERATURE 293K. 1 MG/ML PROTEIN, 30% PEG2K, 0.100M MES/ACETATE, REMARK 280 5% DMSO, VAPOR DIFFUSION, HANGING DROP, PH 5.5, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 94.34000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.43150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 94.34000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.43150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT APPEARS TO BE A MONOMER WITH REMARK 300 TWO COPIES IN THE ASU REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 541 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 GLU A 40 REMARK 465 ALA A 41 REMARK 465 GLN A 42 REMARK 465 HIS A 43 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 465 GLU B 6 REMARK 465 ASN B 7 REMARK 465 SER B 38 REMARK 465 GLY B 39 REMARK 465 GLU B 40 REMARK 465 ALA B 41 REMARK 465 GLN B 42 REMARK 465 HIS B 43 REMARK 465 LEU B 469 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 706 O HOH B 707 2.02 REMARK 500 OG SER A 362 O PHE A 400 2.16 REMARK 500 CD ARG B 382 O HOH B 704 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 497 O HOH A 497 2555 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 427 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 7 -166.94 67.94 REMARK 500 GLN A 68 -13.62 -47.55 REMARK 500 LYS A 314 71.71 -108.15 REMARK 500 ASP A 468 44.38 -108.41 REMARK 500 SER B 67 -179.51 -65.22 REMARK 500 THR B 96 -80.98 -67.80 REMARK 500 ASP B 141 -74.14 -23.67 REMARK 500 PHE B 173 49.63 70.38 REMARK 500 PRO B 190 44.01 -79.11 REMARK 500 LYS B 314 70.43 -112.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.14914 RELATED DB: TARGETDB REMARK 900 RELATED ID: 2ICX RELATED DB: PDB REMARK 900 SAME PROTEIN WITH BOUND UTP REMARK 900 RELATED ID: 2ICY RELATED DB: PDB REMARK 900 SAME PROTEIN WITH BOUND UDP-GLUCOSE DBREF 1Z90 A 1 469 UNP Q9M9P3 Q9M9P3_ARATH 1 469 DBREF 1Z90 B 1 469 UNP Q9M9P3 Q9M9P3_ARATH 1 469 SEQRES 1 A 469 MET ALA ALA THR THR GLU ASN LEU PRO GLN LEU LYS SER SEQRES 2 A 469 ALA VAL ASP GLY LEU THR GLU MET SER GLU SER GLU LYS SEQRES 3 A 469 SER GLY PHE ILE SER LEU VAL SER ARG TYR LEU SER GLY SEQRES 4 A 469 GLU ALA GLN HIS ILE GLU TRP SER LYS ILE GLN THR PRO SEQRES 5 A 469 THR ASP GLU ILE VAL VAL PRO TYR GLU LYS MET THR PRO SEQRES 6 A 469 VAL SER GLN ASP VAL ALA GLU THR LYS ASN LEU LEU ASP SEQRES 7 A 469 LYS LEU VAL VAL LEU LYS LEU ASN GLY GLY LEU GLY THR SEQRES 8 A 469 THR MET GLY CYS THR GLY PRO LYS SER VAL ILE GLU VAL SEQRES 9 A 469 ARG ASP GLY LEU THR PHE LEU ASP LEU ILE VAL ILE GLN SEQRES 10 A 469 ILE GLU ASN LEU ASN ASN LYS TYR GLY CYS LYS VAL PRO SEQRES 11 A 469 LEU VAL LEU MET ASN SER PHE ASN THR HIS ASP ASP THR SEQRES 12 A 469 HIS LYS ILE VAL GLU LYS TYR THR ASN SER ASN VAL ASP SEQRES 13 A 469 ILE HIS THR PHE ASN GLN SER LYS TYR PRO ARG VAL VAL SEQRES 14 A 469 ALA ASP GLU PHE VAL PRO TRP PRO SER LYS GLY LYS THR SEQRES 15 A 469 ASP LYS GLU GLY TRP TYR PRO PRO GLY HIS GLY ASP VAL SEQRES 16 A 469 PHE PRO ALA LEU MET ASN SER GLY LYS LEU ASP THR PHE SEQRES 17 A 469 LEU SER GLN GLY LYS GLU TYR VAL PHE VAL ALA ASN SER SEQRES 18 A 469 ASP ASN LEU GLY ALA ILE VAL ASP LEU THR ILE LEU LYS SEQRES 19 A 469 HIS LEU ILE GLN ASN LYS ASN GLU TYR CYS MET GLU VAL SEQRES 20 A 469 THR PRO LYS THR LEU ALA ASP VAL LYS GLY GLY THR LEU SEQRES 21 A 469 ILE SER TYR GLU GLY LYS VAL GLN LEU LEU GLU ILE ALA SEQRES 22 A 469 GLN VAL PRO ASP GLU HIS VAL ASN GLU PHE LYS SER ILE SEQRES 23 A 469 GLU LYS PHE LYS ILE PHE ASN THR ASN ASN LEU TRP VAL SEQRES 24 A 469 ASN LEU LYS ALA ILE LYS LYS LEU VAL GLU ALA ASP ALA SEQRES 25 A 469 LEU LYS MET GLU ILE ILE PRO ASN PRO LYS GLU VAL ASP SEQRES 26 A 469 GLY VAL LYS VAL LEU GLN LEU GLU THR ALA ALA GLY ALA SEQRES 27 A 469 ALA ILE ARG PHE PHE ASP ASN ALA ILE GLY VAL ASN VAL SEQRES 28 A 469 PRO ARG SER ARG PHE LEU PRO VAL LYS ALA SER SER ASP SEQRES 29 A 469 LEU LEU LEU VAL GLN SER ASP LEU TYR THR LEU VAL ASP SEQRES 30 A 469 GLY PHE VAL THR ARG ASN LYS ALA ARG THR ASN PRO SER SEQRES 31 A 469 ASN PRO SER ILE GLU LEU GLY PRO GLU PHE LYS LYS VAL SEQRES 32 A 469 ALA THR PHE LEU SER ARG PHE LYS SER ILE PRO SER ILE SEQRES 33 A 469 VAL GLU LEU ASP SER LEU LYS VAL SER GLY ASP VAL TRP SEQRES 34 A 469 PHE GLY SER SER ILE VAL LEU LYS GLY LYS VAL THR VAL SEQRES 35 A 469 ALA ALA LYS SER GLY VAL LYS LEU GLU ILE PRO ASP ARG SEQRES 36 A 469 ALA VAL VAL GLU ASN LYS ASN ILE ASN GLY PRO GLU ASP SEQRES 37 A 469 LEU SEQRES 1 B 469 MET ALA ALA THR THR GLU ASN LEU PRO GLN LEU LYS SER SEQRES 2 B 469 ALA VAL ASP GLY LEU THR GLU MET SER GLU SER GLU LYS SEQRES 3 B 469 SER GLY PHE ILE SER LEU VAL SER ARG TYR LEU SER GLY SEQRES 4 B 469 GLU ALA GLN HIS ILE GLU TRP SER LYS ILE GLN THR PRO SEQRES 5 B 469 THR ASP GLU ILE VAL VAL PRO TYR GLU LYS MET THR PRO SEQRES 6 B 469 VAL SER GLN ASP VAL ALA GLU THR LYS ASN LEU LEU ASP SEQRES 7 B 469 LYS LEU VAL VAL LEU LYS LEU ASN GLY GLY LEU GLY THR SEQRES 8 B 469 THR MET GLY CYS THR GLY PRO LYS SER VAL ILE GLU VAL SEQRES 9 B 469 ARG ASP GLY LEU THR PHE LEU ASP LEU ILE VAL ILE GLN SEQRES 10 B 469 ILE GLU ASN LEU ASN ASN LYS TYR GLY CYS LYS VAL PRO SEQRES 11 B 469 LEU VAL LEU MET ASN SER PHE ASN THR HIS ASP ASP THR SEQRES 12 B 469 HIS LYS ILE VAL GLU LYS TYR THR ASN SER ASN VAL ASP SEQRES 13 B 469 ILE HIS THR PHE ASN GLN SER LYS TYR PRO ARG VAL VAL SEQRES 14 B 469 ALA ASP GLU PHE VAL PRO TRP PRO SER LYS GLY LYS THR SEQRES 15 B 469 ASP LYS GLU GLY TRP TYR PRO PRO GLY HIS GLY ASP VAL SEQRES 16 B 469 PHE PRO ALA LEU MET ASN SER GLY LYS LEU ASP THR PHE SEQRES 17 B 469 LEU SER GLN GLY LYS GLU TYR VAL PHE VAL ALA ASN SER SEQRES 18 B 469 ASP ASN LEU GLY ALA ILE VAL ASP LEU THR ILE LEU LYS SEQRES 19 B 469 HIS LEU ILE GLN ASN LYS ASN GLU TYR CYS MET GLU VAL SEQRES 20 B 469 THR PRO LYS THR LEU ALA ASP VAL LYS GLY GLY THR LEU SEQRES 21 B 469 ILE SER TYR GLU GLY LYS VAL GLN LEU LEU GLU ILE ALA SEQRES 22 B 469 GLN VAL PRO ASP GLU HIS VAL ASN GLU PHE LYS SER ILE SEQRES 23 B 469 GLU LYS PHE LYS ILE PHE ASN THR ASN ASN LEU TRP VAL SEQRES 24 B 469 ASN LEU LYS ALA ILE LYS LYS LEU VAL GLU ALA ASP ALA SEQRES 25 B 469 LEU LYS MET GLU ILE ILE PRO ASN PRO LYS GLU VAL ASP SEQRES 26 B 469 GLY VAL LYS VAL LEU GLN LEU GLU THR ALA ALA GLY ALA SEQRES 27 B 469 ALA ILE ARG PHE PHE ASP ASN ALA ILE GLY VAL ASN VAL SEQRES 28 B 469 PRO ARG SER ARG PHE LEU PRO VAL LYS ALA SER SER ASP SEQRES 29 B 469 LEU LEU LEU VAL GLN SER ASP LEU TYR THR LEU VAL ASP SEQRES 30 B 469 GLY PHE VAL THR ARG ASN LYS ALA ARG THR ASN PRO SER SEQRES 31 B 469 ASN PRO SER ILE GLU LEU GLY PRO GLU PHE LYS LYS VAL SEQRES 32 B 469 ALA THR PHE LEU SER ARG PHE LYS SER ILE PRO SER ILE SEQRES 33 B 469 VAL GLU LEU ASP SER LEU LYS VAL SER GLY ASP VAL TRP SEQRES 34 B 469 PHE GLY SER SER ILE VAL LEU LYS GLY LYS VAL THR VAL SEQRES 35 B 469 ALA ALA LYS SER GLY VAL LYS LEU GLU ILE PRO ASP ARG SEQRES 36 B 469 ALA VAL VAL GLU ASN LYS ASN ILE ASN GLY PRO GLU ASP SEQRES 37 B 469 LEU FORMUL 3 HOH *421(H2 O) HELIX 1 1 LEU A 8 GLY A 17 1 10 HELIX 2 2 SER A 22 GLY A 39 1 18 HELIX 3 3 GLU A 45 SER A 47 5 3 HELIX 4 4 ASP A 69 ASP A 78 1 10 HELIX 5 5 GLY A 90 GLY A 94 5 5 HELIX 6 6 PRO A 98 VAL A 101 5 4 HELIX 7 7 PHE A 110 GLY A 126 1 17 HELIX 8 8 THR A 139 VAL A 147 1 9 HELIX 9 9 GLU A 148 THR A 151 5 4 HELIX 10 10 PRO A 177 GLY A 180 5 4 HELIX 11 11 ASP A 183 GLU A 185 5 3 HELIX 12 12 GLY A 191 GLY A 193 5 3 HELIX 13 13 ASP A 194 SER A 202 1 9 HELIX 14 14 GLY A 203 GLN A 211 1 9 HELIX 15 15 ASP A 229 LYS A 240 1 12 HELIX 16 16 THR A 251 VAL A 255 5 5 HELIX 17 17 GLU A 271 VAL A 275 5 5 HELIX 18 18 PRO A 276 GLU A 278 5 3 HELIX 19 19 HIS A 279 LYS A 284 1 6 HELIX 20 20 LEU A 301 ALA A 310 1 10 HELIX 21 21 ALA A 335 PHE A 343 5 9 HELIX 22 22 PRO A 352 PHE A 356 5 5 HELIX 23 23 ALA A 361 SER A 370 1 10 HELIX 24 24 PRO A 398 LYS A 401 5 4 HELIX 25 25 LYS A 402 ARG A 409 1 8 HELIX 26 26 GLY A 465 LEU A 469 5 5 HELIX 27 27 LEU B 8 LEU B 18 1 11 HELIX 28 28 SER B 22 LEU B 37 1 16 HELIX 29 29 GLU B 45 ILE B 49 5 5 HELIX 30 30 GLU B 61 MET B 63 5 3 HELIX 31 31 ASP B 69 ASP B 78 1 10 HELIX 32 32 GLY B 90 GLY B 94 5 5 HELIX 33 33 PRO B 98 VAL B 101 5 4 HELIX 34 34 PHE B 110 GLY B 126 1 17 HELIX 35 35 THR B 139 VAL B 147 1 9 HELIX 36 36 GLU B 148 THR B 151 5 4 HELIX 37 37 PRO B 177 GLY B 180 5 4 HELIX 38 38 ASP B 183 GLU B 185 5 3 HELIX 39 39 GLY B 191 GLY B 193 5 3 HELIX 40 40 ASP B 194 SER B 202 1 9 HELIX 41 41 GLY B 203 GLN B 211 1 9 HELIX 42 42 ASP B 229 LYS B 240 1 12 HELIX 43 43 THR B 251 VAL B 255 5 5 HELIX 44 44 GLU B 271 VAL B 275 5 5 HELIX 45 45 PRO B 276 GLU B 278 5 3 HELIX 46 46 HIS B 279 LYS B 284 1 6 HELIX 47 47 LEU B 301 ALA B 310 1 10 HELIX 48 48 ALA B 335 PHE B 343 5 9 HELIX 49 49 PRO B 352 PHE B 356 5 5 HELIX 50 50 ALA B 361 SER B 370 1 10 HELIX 51 51 PRO B 398 LYS B 401 5 4 HELIX 52 52 LYS B 402 PHE B 410 1 9 SHEET 1 A 3 ILE A 49 GLN A 50 0 SHEET 2 A 3 THR A 259 TYR A 263 -1 O SER A 262 N GLN A 50 SHEET 3 A 3 LYS A 266 LEU A 270 -1 O LEU A 270 N THR A 259 SHEET 1 B 8 VAL A 57 PRO A 59 0 SHEET 2 B 8 ILE A 347 ASN A 350 1 O GLY A 348 N VAL A 58 SHEET 3 B 8 TYR A 243 PRO A 249 1 N VAL A 247 O VAL A 349 SHEET 4 B 8 ILE A 291 ASN A 300 -1 O TRP A 298 N CYS A 244 SHEET 5 B 8 TYR A 215 ASN A 220 -1 N VAL A 218 O LEU A 297 SHEET 6 B 8 LEU A 80 ASN A 86 1 N LEU A 83 O PHE A 217 SHEET 7 B 8 LEU A 131 ASN A 135 1 O MET A 134 N ASN A 86 SHEET 8 B 8 ILE A 157 ASN A 161 1 O HIS A 158 N LEU A 131 SHEET 1 C 2 GLU A 103 ARG A 105 0 SHEET 2 C 2 LEU A 108 THR A 109 -1 O LEU A 108 N VAL A 104 SHEET 1 D 2 TYR A 165 PRO A 166 0 SHEET 2 D 2 TRP A 187 TYR A 188 -1 O TYR A 188 N TYR A 165 SHEET 1 E 4 VAL A 174 PRO A 175 0 SHEET 2 E 4 VAL A 168 VAL A 169 -1 N VAL A 169 O VAL A 174 SHEET 3 E 4 VAL A 327 LEU A 330 -1 O LEU A 330 N VAL A 168 SHEET 4 E 4 PRO A 321 VAL A 324 -1 N VAL A 324 O VAL A 327 SHEET 1 F 2 TYR A 373 VAL A 376 0 SHEET 2 F 2 PHE A 379 ARG A 382 -1 O THR A 381 N THR A 374 SHEET 1 G 4 SER A 393 LEU A 396 0 SHEET 2 G 4 LEU A 419 SER A 425 1 O LEU A 422 N GLU A 395 SHEET 3 G 4 VAL A 435 ALA A 443 1 O VAL A 440 N SER A 421 SHEET 4 G 4 VAL A 457 ILE A 463 1 O ILE A 463 N ALA A 443 SHEET 1 H 2 ASP A 427 PHE A 430 0 SHEET 2 H 2 LYS A 449 ILE A 452 1 O ILE A 452 N TRP A 429 SHEET 1 I 8 VAL B 57 PRO B 59 0 SHEET 2 I 8 ILE B 347 ASN B 350 1 O GLY B 348 N VAL B 58 SHEET 3 I 8 TYR B 243 PRO B 249 1 N VAL B 247 O VAL B 349 SHEET 4 I 8 ILE B 291 ASN B 300 -1 O ASN B 296 N GLU B 246 SHEET 5 I 8 TYR B 215 ASN B 220 -1 N VAL B 218 O LEU B 297 SHEET 6 I 8 LEU B 80 LEU B 85 1 N LEU B 83 O PHE B 217 SHEET 7 I 8 LEU B 131 ASN B 135 1 O VAL B 132 N VAL B 82 SHEET 8 I 8 ILE B 157 ASN B 161 1 O HIS B 158 N LEU B 131 SHEET 1 J 2 GLU B 103 ARG B 105 0 SHEET 2 J 2 LEU B 108 THR B 109 -1 O LEU B 108 N VAL B 104 SHEET 1 K 2 TYR B 165 PRO B 166 0 SHEET 2 K 2 TRP B 187 TYR B 188 -1 O TYR B 188 N TYR B 165 SHEET 1 L 4 VAL B 174 PRO B 175 0 SHEET 2 L 4 VAL B 168 VAL B 169 -1 N VAL B 169 O VAL B 174 SHEET 3 L 4 VAL B 327 GLU B 333 -1 O LEU B 330 N VAL B 168 SHEET 4 L 4 ILE B 318 VAL B 324 -1 N ASN B 320 O GLN B 331 SHEET 1 M 2 THR B 259 TYR B 263 0 SHEET 2 M 2 LYS B 266 LEU B 270 -1 O LEU B 270 N THR B 259 SHEET 1 N 2 TYR B 373 VAL B 376 0 SHEET 2 N 2 PHE B 379 ARG B 382 -1 O THR B 381 N THR B 374 SHEET 1 O 4 SER B 393 LEU B 396 0 SHEET 2 O 4 LEU B 419 SER B 425 1 O LEU B 422 N SER B 393 SHEET 3 O 4 VAL B 435 ALA B 443 1 O GLY B 438 N ASP B 420 SHEET 4 O 4 VAL B 457 ILE B 463 1 O ILE B 463 N THR B 441 SHEET 1 P 2 ASP B 427 PHE B 430 0 SHEET 2 P 2 LYS B 449 ILE B 452 1 O ILE B 452 N TRP B 429 CRYST1 188.680 58.863 89.862 90.00 100.40 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005300 0.000000 0.000970 0.00000 SCALE2 0.000000 0.016990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011310 0.00000