HEADER TRANSCRIPTION/DNA 01-APR-05 1Z9C TITLE CRYSTAL STRUCTURE OF OHRR BOUND TO THE OHRA PROMOTER: STRUCTURE OF TITLE 2 MARR FAMILY PROTEIN WITH OPERATOR DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (29-MER); COMPND 3 CHAIN: G, I, K; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (29-MER); COMPND 7 CHAIN: H, J, L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ORGANIC HYDROPEROXIDE RESISTANCE TRANSCRIPTIONAL REGULATOR; COMPND 11 CHAIN: A, B, C, D, E, F; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 7 ORGANISM_TAXID: 1423; SOURCE 8 GENE: OHRR; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)/PLYSS; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET16X KEYWDS OHRR, MARR FAMILY PROTEIN, BACTERIAL TRANSCRIPTION FACTOR, WINGED HTH KEYWDS 2 PROTEIN, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.HONG,M.FUANGTHONG,J.D.HELMANN,R.G.BRENNAN REVDAT 4 14-FEB-24 1Z9C 1 REMARK REVDAT 3 20-OCT-21 1Z9C 1 SEQADV REVDAT 2 24-FEB-09 1Z9C 1 VERSN REVDAT 1 25-OCT-05 1Z9C 0 JRNL AUTH M.HONG,M.FUANGTHONG,J.D.HELMANN,R.G.BRENNAN JRNL TITL STRUCTURE OF AN OHRR-OHRA OPERATOR COMPLEX REVEALS THE DNA JRNL TITL 2 BINDING MECHANISM OF THE MARR FAMILY. JRNL REF MOL.CELL V. 20 131 2005 JRNL REFN ISSN 1097-2765 JRNL PMID 16209951 JRNL DOI 10.1016/J.MOLCEL.2005.09.013 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1281466.375 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 39953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2012 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6447 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 317 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6413 REMARK 3 NUCLEIC ACID ATOMS : 3486 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.15000 REMARK 3 B22 (A**2) : -1.81000 REMARK 3 B33 (A**2) : 9.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.540 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; 0.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; 0.000 REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; 0.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 47.59 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN.TOP REMARK 3 PARAMETER FILE 2 : DNA-RNA.TOP REMARK 3 PARAMETER FILE 3 : WATER.TOP REMARK 3 PARAMETER FILE 4 : ION.TOP REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN_REP.PARAM REMARK 3 TOPOLOGY FILE 2 : DNA-RNA_REP.PARAM REMARK 3 TOPOLOGY FILE 3 : WATER_REP.PARAM REMARK 3 TOPOLOGY FILE 4 : ION.PARAM REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z9C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47153 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 59.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : 0.05400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.38600 REMARK 200 R SYM FOR SHELL (I) : 0.38600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR 2.5 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 3.7, 0.1 M MGCL2 AND 5 TO 8 % OF REMARK 280 PEG 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.48000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL DIMER WAS OBSERVED IN THE STRUCTURE OF OHRR-DNA REMARK 300 COMPLEX REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, J, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DT I 1 REMARK 465 DT J 29 REMARK 465 DT L 29 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 LYS A 4 REMARK 465 PHE A 5 REMARK 465 ASP A 6 REMARK 465 HIS A 7 REMARK 465 MET A 8 REMARK 465 LYS A 146 REMARK 465 ASN A 147 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ASN B 3 REMARK 465 LYS B 4 REMARK 465 PHE B 5 REMARK 465 ASP B 6 REMARK 465 HIS B 7 REMARK 465 GLN B 145 REMARK 465 LYS B 146 REMARK 465 ASN B 147 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 ASN C 3 REMARK 465 LYS C 4 REMARK 465 PHE C 5 REMARK 465 ASP C 6 REMARK 465 GLN C 145 REMARK 465 LYS C 146 REMARK 465 ASN C 147 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 ASN D 3 REMARK 465 LYS D 4 REMARK 465 PHE D 5 REMARK 465 ASP D 6 REMARK 465 HIS D 7 REMARK 465 GLN D 145 REMARK 465 LYS D 146 REMARK 465 ASN D 147 REMARK 465 MET E 1 REMARK 465 GLU E 2 REMARK 465 ASN E 3 REMARK 465 LYS E 4 REMARK 465 PHE E 5 REMARK 465 ASP E 6 REMARK 465 HIS E 7 REMARK 465 GLN E 145 REMARK 465 LYS E 146 REMARK 465 ASN E 147 REMARK 465 MET F 1 REMARK 465 GLU F 2 REMARK 465 ASN F 3 REMARK 465 LYS F 4 REMARK 465 PHE F 5 REMARK 465 ASP F 6 REMARK 465 GLN F 145 REMARK 465 LYS F 146 REMARK 465 ASN F 147 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA I 2 P OP1 OP2 REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 ASP A 128 CG OD1 OD2 REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 LYS B 9 CG CD CE NZ REMARK 470 ASN B 12 CG OD1 ND2 REMARK 470 ARG B 88 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 93 CG CD OE1 OE2 REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 LYS B 130 CG CD CE NZ REMARK 470 LYS B 133 CG CD CE NZ REMARK 470 GLU B 141 CG CD OE1 OE2 REMARK 470 LYS C 9 CG CD CE NZ REMARK 470 LYS C 27 CG CD CE NZ REMARK 470 LYS C 35 CG CD CE NZ REMARK 470 GLU C 51 CG CD OE1 OE2 REMARK 470 GLU C 53 CG CD OE1 OE2 REMARK 470 LYS C 58 CG CD CE NZ REMARK 470 LYS C 59 CG CD CE NZ REMARK 470 GLU C 62 CG CD OE1 OE2 REMARK 470 LYS C 87 CG CD CE NZ REMARK 470 ARG C 88 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 90 CG CD OE1 OE2 REMARK 470 GLU C 109 CG CD OE1 OE2 REMARK 470 GLN C 124 CG CD OE1 NE2 REMARK 470 LYS D 30 CG CD CE NZ REMARK 470 LEU D 32 CG CD1 CD2 REMARK 470 LYS D 35 CG CD CE NZ REMARK 470 GLU D 53 CG CD OE1 OE2 REMARK 470 LYS D 58 CG CD CE NZ REMARK 470 LYS D 76 CG CD CE NZ REMARK 470 LYS D 87 CG CD CE NZ REMARK 470 GLU D 93 CG CD OE1 OE2 REMARK 470 GLU D 109 CG CD OE1 OE2 REMARK 470 LEU D 121 CG CD1 CD2 REMARK 470 GLN D 124 CG CD OE1 NE2 REMARK 470 LYS D 130 CG CD CE NZ REMARK 470 GLU D 141 CG CD OE1 OE2 REMARK 470 LYS E 9 CG CD CE NZ REMARK 470 LYS E 35 CG CD CE NZ REMARK 470 LYS E 123 CG CD CE NZ REMARK 470 GLU E 141 CG CD OE1 OE2 REMARK 470 HIS F 7 CG ND1 CD2 CE1 NE2 REMARK 470 GLU F 53 CG CD OE1 OE2 REMARK 470 LYS F 87 CG CD CE NZ REMARK 470 GLU F 93 CG CD OE1 OE2 REMARK 470 GLN F 124 CG CD OE1 NE2 REMARK 470 LYS F 130 CG CD CE NZ REMARK 470 GLN F 131 CG CD OE1 NE2 REMARK 470 HIS F 144 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT G 7 C5 DT G 7 C7 0.133 REMARK 500 DT G 14 C5 DT G 14 C7 0.188 REMARK 500 DT H 14 C5 DT H 14 C7 0.164 REMARK 500 DT I 7 C5 DT I 7 C7 0.139 REMARK 500 DT I 14 C5 DT I 14 C7 0.128 REMARK 500 DT J 7 C5 DT J 7 C7 0.110 REMARK 500 DT J 14 C5 DT J 14 C7 0.125 REMARK 500 DT K 7 C5 DT K 7 C7 0.137 REMARK 500 DT K 14 C5 DT K 14 C7 0.175 REMARK 500 DT L 7 C5 DT L 7 C7 0.137 REMARK 500 DT L 14 C5 DT L 14 C7 0.142 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT K 1 C1' - O4' - C4' ANGL. DEV. = -8.9 DEGREES REMARK 500 DT K 1 C2' - C3' - O3' ANGL. DEV. = -17.0 DEGREES REMARK 500 DT K 1 C4' - C3' - C2' ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 10 -40.63 -136.81 REMARK 500 GLU A 53 -37.11 -32.55 REMARK 500 ASP A 92 83.28 -157.85 REMARK 500 GLU A 93 3.72 -50.75 REMARK 500 GLN A 124 6.34 -65.28 REMARK 500 SER A 125 -77.42 -76.03 REMARK 500 THR A 142 -70.35 -62.24 REMARK 500 LEU A 143 -7.65 -53.55 REMARK 500 GLU B 11 -10.68 -46.05 REMARK 500 HIS B 52 89.04 -162.04 REMARK 500 GLU B 53 -47.98 -24.34 REMARK 500 ASP B 92 83.22 179.60 REMARK 500 GLU B 93 1.52 -49.07 REMARK 500 LYS B 123 13.90 -61.95 REMARK 500 GLU B 127 173.08 174.94 REMARK 500 LEU C 10 -72.74 -43.96 REMARK 500 GLU C 11 5.26 -49.00 REMARK 500 GLU C 53 -29.75 -37.40 REMARK 500 GLU C 93 -0.21 -59.18 REMARK 500 VAL C 112 -38.83 -38.43 REMARK 500 SER C 122 -73.62 -90.46 REMARK 500 SER C 125 101.36 174.64 REMARK 500 GLU C 127 79.45 51.64 REMARK 500 LEU C 143 4.15 -63.83 REMARK 500 TRP D 50 10.75 -69.27 REMARK 500 GLU D 51 23.94 -143.17 REMARK 500 HIS D 52 68.87 178.77 REMARK 500 GLU D 53 -84.63 -13.92 REMARK 500 LEU D 66 -154.73 -116.46 REMARK 500 ASP D 67 -178.72 -173.18 REMARK 500 ASP D 92 90.01 -166.47 REMARK 500 GLU D 93 -4.26 -54.87 REMARK 500 GLN D 124 -147.79 -168.84 REMARK 500 SER D 125 -119.85 47.21 REMARK 500 GLU E 53 -43.55 -24.92 REMARK 500 GLU E 93 -8.58 -53.16 REMARK 500 LEU E 121 -52.31 -138.91 REMARK 500 GLN E 124 2.18 -61.48 REMARK 500 SER E 125 -143.78 -123.91 REMARK 500 GLU E 127 62.95 -47.14 REMARK 500 LEU E 129 -34.82 -30.28 REMARK 500 GLU F 53 -58.81 -23.64 REMARK 500 GLU F 93 -9.15 56.21 REMARK 500 SER F 122 55.26 -101.26 REMARK 500 LYS F 123 31.49 -94.30 REMARK 500 GLN F 124 106.29 -58.07 REMARK 500 SER F 125 12.10 38.22 REMARK 500 REMARK 500 REMARK: NULL DBREF 1Z9C A 1 147 UNP O34777 OHRR_BACSU 1 147 DBREF 1Z9C B 1 147 UNP O34777 OHRR_BACSU 1 147 DBREF 1Z9C C 1 147 UNP O34777 OHRR_BACSU 1 147 DBREF 1Z9C D 1 147 UNP O34777 OHRR_BACSU 1 147 DBREF 1Z9C E 1 147 UNP O34777 OHRR_BACSU 1 147 DBREF 1Z9C F 1 147 UNP O34777 OHRR_BACSU 1 147 DBREF 1Z9C G 1 29 PDB 1Z9C 1Z9C 1 29 DBREF 1Z9C H 1 29 PDB 1Z9C 1Z9C 1 29 DBREF 1Z9C I 1 29 PDB 1Z9C 1Z9C 1 29 DBREF 1Z9C J 1 29 PDB 1Z9C 1Z9C 1 29 DBREF 1Z9C K 1 29 PDB 1Z9C 1Z9C 1 29 DBREF 1Z9C L 1 29 PDB 1Z9C 1Z9C 1 29 SEQADV 1Z9C SER A 15 UNP O34777 CYS 15 ENGINEERED MUTATION SEQADV 1Z9C SER B 15 UNP O34777 CYS 15 ENGINEERED MUTATION SEQADV 1Z9C SER C 15 UNP O34777 CYS 15 ENGINEERED MUTATION SEQADV 1Z9C SER D 15 UNP O34777 CYS 15 ENGINEERED MUTATION SEQADV 1Z9C SER E 15 UNP O34777 CYS 15 ENGINEERED MUTATION SEQADV 1Z9C SER F 15 UNP O34777 CYS 15 ENGINEERED MUTATION SEQRES 1 G 29 DT DA DC DA DA DT DT DT DA DA DT DT DG SEQRES 2 G 29 DT DA DT DA DC DA DA DT DT DT DA DA DT SEQRES 3 G 29 DT DG DT SEQRES 1 H 29 DT DA DC DA DA DT DT DA DA DA DT DT DG SEQRES 2 H 29 DT DA DT DA DC DA DA DT DT DA DA DA DT SEQRES 3 H 29 DT DG DT SEQRES 1 I 29 DT DA DC DA DA DT DT DT DA DA DT DT DG SEQRES 2 I 29 DT DA DT DA DC DA DA DT DT DT DA DA DT SEQRES 3 I 29 DT DG DT SEQRES 1 J 29 DT DA DC DA DA DT DT DA DA DA DT DT DG SEQRES 2 J 29 DT DA DT DA DC DA DA DT DT DA DA DA DT SEQRES 3 J 29 DT DG DT SEQRES 1 K 29 DT DA DC DA DA DT DT DT DA DA DT DT DG SEQRES 2 K 29 DT DA DT DA DC DA DA DT DT DT DA DA DT SEQRES 3 K 29 DT DG DT SEQRES 1 L 29 DT DA DC DA DA DT DT DA DA DA DT DT DG SEQRES 2 L 29 DT DA DT DA DC DA DA DT DT DA DA DA DT SEQRES 3 L 29 DT DG DT SEQRES 1 A 147 MET GLU ASN LYS PHE ASP HIS MET LYS LEU GLU ASN GLN SEQRES 2 A 147 LEU SER PHE LEU LEU TYR ALA SER SER ARG GLU MET THR SEQRES 3 A 147 LYS GLN TYR LYS PRO LEU LEU ASP LYS LEU ASN ILE THR SEQRES 4 A 147 TYR PRO GLN TYR LEU ALA LEU LEU LEU LEU TRP GLU HIS SEQRES 5 A 147 GLU THR LEU THR VAL LYS LYS MET GLY GLU GLN LEU TYR SEQRES 6 A 147 LEU ASP SER GLY THR LEU THR PRO MET LEU LYS ARG MET SEQRES 7 A 147 GLU GLN GLN GLY LEU ILE THR ARG LYS ARG SER GLU GLU SEQRES 8 A 147 ASP GLU ARG SER VAL LEU ILE SER LEU THR GLU ASP GLY SEQRES 9 A 147 ALA LEU LEU LYS GLU LYS ALA VAL ASP ILE PRO GLY THR SEQRES 10 A 147 ILE LEU GLY LEU SER LYS GLN SER GLY GLU ASP LEU LYS SEQRES 11 A 147 GLN LEU LYS SER ALA LEU TYR THR LEU LEU GLU THR LEU SEQRES 12 A 147 HIS GLN LYS ASN SEQRES 1 B 147 MET GLU ASN LYS PHE ASP HIS MET LYS LEU GLU ASN GLN SEQRES 2 B 147 LEU SER PHE LEU LEU TYR ALA SER SER ARG GLU MET THR SEQRES 3 B 147 LYS GLN TYR LYS PRO LEU LEU ASP LYS LEU ASN ILE THR SEQRES 4 B 147 TYR PRO GLN TYR LEU ALA LEU LEU LEU LEU TRP GLU HIS SEQRES 5 B 147 GLU THR LEU THR VAL LYS LYS MET GLY GLU GLN LEU TYR SEQRES 6 B 147 LEU ASP SER GLY THR LEU THR PRO MET LEU LYS ARG MET SEQRES 7 B 147 GLU GLN GLN GLY LEU ILE THR ARG LYS ARG SER GLU GLU SEQRES 8 B 147 ASP GLU ARG SER VAL LEU ILE SER LEU THR GLU ASP GLY SEQRES 9 B 147 ALA LEU LEU LYS GLU LYS ALA VAL ASP ILE PRO GLY THR SEQRES 10 B 147 ILE LEU GLY LEU SER LYS GLN SER GLY GLU ASP LEU LYS SEQRES 11 B 147 GLN LEU LYS SER ALA LEU TYR THR LEU LEU GLU THR LEU SEQRES 12 B 147 HIS GLN LYS ASN SEQRES 1 C 147 MET GLU ASN LYS PHE ASP HIS MET LYS LEU GLU ASN GLN SEQRES 2 C 147 LEU SER PHE LEU LEU TYR ALA SER SER ARG GLU MET THR SEQRES 3 C 147 LYS GLN TYR LYS PRO LEU LEU ASP LYS LEU ASN ILE THR SEQRES 4 C 147 TYR PRO GLN TYR LEU ALA LEU LEU LEU LEU TRP GLU HIS SEQRES 5 C 147 GLU THR LEU THR VAL LYS LYS MET GLY GLU GLN LEU TYR SEQRES 6 C 147 LEU ASP SER GLY THR LEU THR PRO MET LEU LYS ARG MET SEQRES 7 C 147 GLU GLN GLN GLY LEU ILE THR ARG LYS ARG SER GLU GLU SEQRES 8 C 147 ASP GLU ARG SER VAL LEU ILE SER LEU THR GLU ASP GLY SEQRES 9 C 147 ALA LEU LEU LYS GLU LYS ALA VAL ASP ILE PRO GLY THR SEQRES 10 C 147 ILE LEU GLY LEU SER LYS GLN SER GLY GLU ASP LEU LYS SEQRES 11 C 147 GLN LEU LYS SER ALA LEU TYR THR LEU LEU GLU THR LEU SEQRES 12 C 147 HIS GLN LYS ASN SEQRES 1 D 147 MET GLU ASN LYS PHE ASP HIS MET LYS LEU GLU ASN GLN SEQRES 2 D 147 LEU SER PHE LEU LEU TYR ALA SER SER ARG GLU MET THR SEQRES 3 D 147 LYS GLN TYR LYS PRO LEU LEU ASP LYS LEU ASN ILE THR SEQRES 4 D 147 TYR PRO GLN TYR LEU ALA LEU LEU LEU LEU TRP GLU HIS SEQRES 5 D 147 GLU THR LEU THR VAL LYS LYS MET GLY GLU GLN LEU TYR SEQRES 6 D 147 LEU ASP SER GLY THR LEU THR PRO MET LEU LYS ARG MET SEQRES 7 D 147 GLU GLN GLN GLY LEU ILE THR ARG LYS ARG SER GLU GLU SEQRES 8 D 147 ASP GLU ARG SER VAL LEU ILE SER LEU THR GLU ASP GLY SEQRES 9 D 147 ALA LEU LEU LYS GLU LYS ALA VAL ASP ILE PRO GLY THR SEQRES 10 D 147 ILE LEU GLY LEU SER LYS GLN SER GLY GLU ASP LEU LYS SEQRES 11 D 147 GLN LEU LYS SER ALA LEU TYR THR LEU LEU GLU THR LEU SEQRES 12 D 147 HIS GLN LYS ASN SEQRES 1 E 147 MET GLU ASN LYS PHE ASP HIS MET LYS LEU GLU ASN GLN SEQRES 2 E 147 LEU SER PHE LEU LEU TYR ALA SER SER ARG GLU MET THR SEQRES 3 E 147 LYS GLN TYR LYS PRO LEU LEU ASP LYS LEU ASN ILE THR SEQRES 4 E 147 TYR PRO GLN TYR LEU ALA LEU LEU LEU LEU TRP GLU HIS SEQRES 5 E 147 GLU THR LEU THR VAL LYS LYS MET GLY GLU GLN LEU TYR SEQRES 6 E 147 LEU ASP SER GLY THR LEU THR PRO MET LEU LYS ARG MET SEQRES 7 E 147 GLU GLN GLN GLY LEU ILE THR ARG LYS ARG SER GLU GLU SEQRES 8 E 147 ASP GLU ARG SER VAL LEU ILE SER LEU THR GLU ASP GLY SEQRES 9 E 147 ALA LEU LEU LYS GLU LYS ALA VAL ASP ILE PRO GLY THR SEQRES 10 E 147 ILE LEU GLY LEU SER LYS GLN SER GLY GLU ASP LEU LYS SEQRES 11 E 147 GLN LEU LYS SER ALA LEU TYR THR LEU LEU GLU THR LEU SEQRES 12 E 147 HIS GLN LYS ASN SEQRES 1 F 147 MET GLU ASN LYS PHE ASP HIS MET LYS LEU GLU ASN GLN SEQRES 2 F 147 LEU SER PHE LEU LEU TYR ALA SER SER ARG GLU MET THR SEQRES 3 F 147 LYS GLN TYR LYS PRO LEU LEU ASP LYS LEU ASN ILE THR SEQRES 4 F 147 TYR PRO GLN TYR LEU ALA LEU LEU LEU LEU TRP GLU HIS SEQRES 5 F 147 GLU THR LEU THR VAL LYS LYS MET GLY GLU GLN LEU TYR SEQRES 6 F 147 LEU ASP SER GLY THR LEU THR PRO MET LEU LYS ARG MET SEQRES 7 F 147 GLU GLN GLN GLY LEU ILE THR ARG LYS ARG SER GLU GLU SEQRES 8 F 147 ASP GLU ARG SER VAL LEU ILE SER LEU THR GLU ASP GLY SEQRES 9 F 147 ALA LEU LEU LYS GLU LYS ALA VAL ASP ILE PRO GLY THR SEQRES 10 F 147 ILE LEU GLY LEU SER LYS GLN SER GLY GLU ASP LEU LYS SEQRES 11 F 147 GLN LEU LYS SER ALA LEU TYR THR LEU LEU GLU THR LEU SEQRES 12 F 147 HIS GLN LYS ASN FORMUL 13 HOH *174(H2 O) HELIX 1 1 GLN A 13 LEU A 36 1 24 HELIX 2 2 THR A 39 TRP A 50 1 12 HELIX 3 3 VAL A 57 TYR A 65 1 9 HELIX 4 4 ASP A 67 GLN A 81 1 15 HELIX 5 5 THR A 101 LEU A 107 1 7 HELIX 6 6 LYS A 108 VAL A 112 5 5 HELIX 7 7 ASP A 113 LYS A 123 1 11 HELIX 8 8 ASP A 128 LEU A 143 1 16 HELIX 9 9 LYS B 9 ASN B 12 5 4 HELIX 10 10 GLN B 13 LYS B 35 1 23 HELIX 11 11 THR B 39 GLU B 51 1 13 HELIX 12 12 VAL B 57 TYR B 65 1 9 HELIX 13 13 THR B 70 GLN B 81 1 12 HELIX 14 14 THR B 101 LEU B 107 1 7 HELIX 15 15 LYS B 108 VAL B 112 5 5 HELIX 16 16 ASP B 113 LYS B 123 1 11 HELIX 17 17 ASP B 128 HIS B 144 1 17 HELIX 18 18 LYS C 9 ASN C 12 5 4 HELIX 19 19 GLN C 13 LEU C 36 1 24 HELIX 20 20 THR C 39 TRP C 50 1 12 HELIX 21 21 VAL C 57 TYR C 65 1 9 HELIX 22 22 ASP C 67 GLN C 81 1 15 HELIX 23 23 THR C 101 VAL C 112 1 12 HELIX 24 24 ASP C 113 LYS C 123 1 11 HELIX 25 25 LYS C 130 LEU C 143 1 14 HELIX 26 26 LYS D 9 ASN D 12 5 4 HELIX 27 27 GLN D 13 LYS D 35 1 23 HELIX 28 28 THR D 39 TRP D 50 1 12 HELIX 29 29 VAL D 57 LEU D 64 1 8 HELIX 30 30 THR D 70 GLN D 81 1 12 HELIX 31 31 THR D 101 LYS D 108 1 8 HELIX 32 32 GLU D 109 ALA D 111 5 3 HELIX 33 33 VAL D 112 LYS D 123 1 12 HELIX 34 34 ASP D 128 LEU D 143 1 16 HELIX 35 35 LYS E 9 ASN E 12 5 4 HELIX 36 36 GLN E 13 LYS E 35 1 23 HELIX 37 37 THR E 39 HIS E 52 1 14 HELIX 38 38 VAL E 57 TYR E 65 1 9 HELIX 39 39 ASP E 67 GLN E 81 1 15 HELIX 40 40 THR E 101 LEU E 107 1 7 HELIX 41 41 LYS E 108 VAL E 112 5 5 HELIX 42 42 ASP E 113 LYS E 123 1 11 HELIX 43 43 ASP E 128 HIS E 144 1 17 HELIX 44 44 LYS F 9 ASN F 12 5 4 HELIX 45 45 GLN F 13 LYS F 35 1 23 HELIX 46 46 THR F 39 HIS F 52 1 14 HELIX 47 47 VAL F 57 TYR F 65 1 9 HELIX 48 48 THR F 70 GLN F 81 1 12 HELIX 49 49 THR F 101 LEU F 107 1 7 HELIX 50 50 LYS F 108 ALA F 111 5 4 HELIX 51 51 VAL F 112 SER F 122 1 11 HELIX 52 52 ASP F 128 LEU F 143 1 16 SHEET 1 A 3 THR A 54 THR A 56 0 SHEET 2 A 3 VAL A 96 LEU A 100 -1 O ILE A 98 N LEU A 55 SHEET 3 A 3 ILE A 84 ARG A 88 -1 N LYS A 87 O LEU A 97 SHEET 1 B 3 THR B 54 THR B 56 0 SHEET 2 B 3 VAL B 96 LEU B 100 -1 O ILE B 98 N LEU B 55 SHEET 3 B 3 ILE B 84 ARG B 88 -1 N THR B 85 O SER B 99 SHEET 1 C 3 THR C 54 THR C 56 0 SHEET 2 C 3 VAL C 96 LEU C 100 -1 O ILE C 98 N LEU C 55 SHEET 3 C 3 ILE C 84 ARG C 88 -1 N LYS C 87 O LEU C 97 SHEET 1 D 3 THR D 54 THR D 56 0 SHEET 2 D 3 VAL D 96 LEU D 100 -1 O ILE D 98 N LEU D 55 SHEET 3 D 3 ILE D 84 ARG D 88 -1 N THR D 85 O SER D 99 SHEET 1 E 3 THR E 54 THR E 56 0 SHEET 2 E 3 VAL E 96 LEU E 100 -1 O ILE E 98 N LEU E 55 SHEET 3 E 3 ILE E 84 ARG E 88 -1 N THR E 85 O SER E 99 SHEET 1 F 3 THR F 54 THR F 56 0 SHEET 2 F 3 VAL F 96 LEU F 100 -1 O ILE F 98 N LEU F 55 SHEET 3 F 3 ILE F 84 ARG F 88 -1 N LYS F 87 O LEU F 97 CRYST1 81.899 80.960 109.340 90.00 100.20 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012210 0.000000 0.002197 0.00000 SCALE2 0.000000 0.012352 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009293 0.00000