HEADER HYDROLASE 01-APR-05 1Z9G TITLE CRYSTAL STRUCTURE ANALYSIS OF THERMOLYSIN COMPLEXED WITH THE INHIBITOR TITLE 2 (R)-RETRO-THIORPHAN CAVEAT 1Z9G INCORRECT CHIRALITY AT RESIDUES 224,278,316 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 5 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS ENZYME-INHIBITOR COMPLEX; ZINC ENDOPEPTIDASE; GAMMA TURN; KEYWDS 2 THERMOSTABLE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.L.RODERICK,M.C.FOURNIE-ZALUSKI,B.P.ROQUES,B.W.MATTHEWS REVDAT 4 23-AUG-23 1Z9G 1 REMARK SEQADV LINK REVDAT 3 11-OCT-17 1Z9G 1 REMARK REVDAT 2 24-FEB-09 1Z9G 1 VERSN REVDAT 1 19-APR-05 1Z9G 0 JRNL AUTH S.L.RODERICK,M.C.FOURNIE-ZALUSKI,B.P.ROQUES,B.W.MATTHEWS JRNL TITL THIORPHAN AND RETRO-THIORPHAN DISPLAY EQUIVALENT JRNL TITL 2 INTERACTIONS WHEN BOUND TO CRYSTALLINE THERMOLYSIN JRNL REF BIOCHEMISTRY V. 28 1493 1989 JRNL REFN ISSN 0006-2960 JRNL PMID 2719912 JRNL DOI 10.1021/BI00430A011 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 71.0 REMARK 3 NUMBER OF REFLECTIONS : 27376 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NONE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1870 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 27376 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 15.500 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.022 ; NULL ; 2508 REMARK 3 BOND ANGLES (DEGREES) : 3.250 ; NULL ; 3405 REMARK 3 TORSION ANGLES (DEGREES) : 16.726; NULL ; 1440 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.014 ; NULL ; 67 REMARK 3 GENERAL PLANES (A) : 0.017 ; NULL ; 376 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 3.992 ; NULL ; 2491 REMARK 3 NON-BONDED CONTACTS (A) : 0.061 ; NULL ; 14 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : 3 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT VERSION 1.0 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : ISOTROPIC REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 40 CYCLES OF CONJUGATE GRADIENT REMARK 3 REFINEMENT REMARK 4 REMARK 4 1Z9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 1987 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ELLIOTT GX-21 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : GRAPHITE MONOCHROMATOR, REMARK 200 COLLIMATING SLITS REMARK 200 REMARK 200 DETECTOR TYPE : FILM REMARK 200 DETECTOR MANUFACTURER : KODAK REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ROTAVATA, OSCTST REMARK 200 DATA SCALING SOFTWARE : CCP4 (AGROVATA, ROTAVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27574 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 72.0 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.03200 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: TNT REMARK 200 STARTING MODEL: PDB ENTRY 3TLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS ACETATE, CALCIUM ACETATE, DMSO, REMARK 280 PH 7.2, DILUTION WITH H2O, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 110.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 88.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 110.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 66.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 22.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ENZYME ACTS AS A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG E 269 OD2 ASP E 294 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH E 418 O HOH E 418 12565 1.40 REMARK 500 O HOH E 485 O HOH E 485 7555 1.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU E 119 CD GLU E 119 OE2 0.092 REMARK 500 GLU E 160 CD GLU E 160 OE1 -0.076 REMARK 500 GLU E 166 CD GLU E 166 OE1 -0.070 REMARK 500 GLU E 166 CD GLU E 166 OE2 0.080 REMARK 500 GLU E 187 CD GLU E 187 OE2 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR E 6 OG1 - CB - CG2 ANGL. DEV. = -14.5 DEGREES REMARK 500 ASP E 16 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP E 16 CB - CG - OD2 ANGL. DEV. = -8.5 DEGREES REMARK 500 THR E 26 CA - CB - CG2 ANGL. DEV. = 9.5 DEGREES REMARK 500 TYR E 28 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG E 35 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP E 57 CB - CG - OD1 ANGL. DEV. = 9.6 DEGREES REMARK 500 ASP E 59 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 GLN E 61 CA - CB - CG ANGL. DEV. = -17.4 DEGREES REMARK 500 ASP E 67 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 TYR E 93 CB - CG - CD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG E 101 CG - CD - NE ANGL. DEV. = -21.0 DEGREES REMARK 500 ARG E 101 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG E 101 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 GLU E 143 CG - CD - OE1 ANGL. DEV. = 14.4 DEGREES REMARK 500 ASP E 185 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 GLY E 196 C - N - CA ANGL. DEV. = -13.1 DEGREES REMARK 500 ILE E 197 CA - CB - CG1 ANGL. DEV. = 19.1 DEGREES REMARK 500 ASP E 200 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP E 200 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 LEU E 202 CB - CG - CD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 ASP E 207 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP E 207 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 TYR E 211 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 TYR E 211 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 TYR E 217 CG - CD1 - CE1 ANGL. DEV. = 5.5 DEGREES REMARK 500 TYR E 217 CG - CD2 - CE2 ANGL. DEV. = -5.6 DEGREES REMARK 500 TYR E 217 CD1 - CE1 - CZ ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG E 220 CD - NE - CZ ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG E 220 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG E 220 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP E 226 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP E 226 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG E 260 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG E 260 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP E 261 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG E 269 CD - NE - CZ ANGL. DEV. = -15.8 DEGREES REMARK 500 ARG E 269 NE - CZ - NH1 ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG E 269 NE - CZ - NH2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TYR E 274 CB - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 TYR E 274 CB - CG - CD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 THR E 278 OG1 - CB - CG2 ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG E 285 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG E 285 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP E 311 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP E 311 CB - CG - OD2 ANGL. DEV. = -8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER E 25 80.45 -158.86 REMARK 500 THR E 26 -54.71 78.04 REMARK 500 PHE E 62 64.79 -116.57 REMARK 500 SER E 92 -175.77 56.39 REMARK 500 SER E 107 -159.10 57.89 REMARK 500 ASN E 111 50.64 -94.89 REMARK 500 GLN E 128 -42.58 -132.39 REMARK 500 THR E 152 -100.12 -108.11 REMARK 500 TYR E 157 48.51 -82.59 REMARK 500 ASN E 159 -140.33 58.31 REMARK 500 THR E 194 76.37 32.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 57 OD1 REMARK 620 2 ASP E 57 OD2 54.3 REMARK 620 3 ASP E 59 OD1 125.6 71.8 REMARK 620 4 GLN E 61 O 98.7 91.7 89.5 REMARK 620 5 HOH E 419 O 80.9 133.7 153.5 83.3 REMARK 620 6 HOH E 482 O 158.1 144.7 73.2 92.1 81.6 REMARK 620 7 HOH E 503 O 83.2 87.6 87.6 177.1 99.2 86.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 138 OD1 REMARK 620 2 GLU E 177 OE1 76.7 REMARK 620 3 GLU E 177 OE2 122.5 47.4 REMARK 620 4 ASP E 185 OD2 163.6 119.6 73.8 REMARK 620 5 GLU E 187 O 88.2 144.5 144.0 77.0 REMARK 620 6 GLU E 190 OE1 81.0 130.3 122.2 88.6 77.0 REMARK 620 7 GLU E 190 OE2 97.9 84.7 68.9 86.3 129.6 55.1 REMARK 620 8 HOH E 346 O 101.3 78.8 82.3 81.4 72.9 149.7 150.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E1005 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 142 NE2 REMARK 620 2 HIS E 146 NE2 102.0 REMARK 620 3 GLU E 166 OE1 126.8 90.9 REMARK 620 4 RRT E1006 SG 119.1 114.1 100.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 177 OE2 REMARK 620 2 ASN E 183 O 93.4 REMARK 620 3 ASP E 185 OD1 86.6 93.2 REMARK 620 4 GLU E 190 OE2 82.7 170.5 78.0 REMARK 620 5 HOH E 353 O 91.4 93.0 173.7 95.8 REMARK 620 6 HOH E 475 O 169.8 93.4 100.7 91.7 80.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR E 193 O REMARK 620 2 THR E 194 OG1 78.4 REMARK 620 3 THR E 194 O 75.7 61.1 REMARK 620 4 ILE E 197 O 157.2 100.9 84.0 REMARK 620 5 ASP E 200 OD1 127.0 78.2 128.8 74.2 REMARK 620 6 HOH E 354 O 82.0 128.1 153.4 114.4 76.5 REMARK 620 7 HOH E 480 O 83.3 145.8 86.6 85.2 135.1 76.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RRT E 1006 DBREF 1Z9G E 1 316 UNP P00800 THER_BACTH 233 548 SEQADV 1Z9G ASP E 37 UNP P00800 ASN 269 CONFLICT SEQADV 1Z9G GLU E 119 UNP P00800 GLN 351 CONFLICT SEQADV 1Z9G GLU E 177 UNP P00800 LYS 409 SEE REMARK 999 SEQRES 1 E 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 E 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 E 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASP GLY ILE SEQRES 4 E 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 E 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 E 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 E 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 E 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 E 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 E 316 SER GLU MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 E 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 E 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 E 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 E 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 E 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 E 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 E 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 E 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 E 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 E 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 E 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 E 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 E 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 E 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 E 316 VAL GLY VAL LYS HET CA E1001 1 HET CA E1002 1 HET CA E1003 1 HET CA E1004 1 HET ZN E1005 1 HET RRT E1006 17 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM RRT (R)-RETRO-THIORPHAN HETSYN RRT 3-{[(1R)-1-BENZYL-2-SULFANYLETHYL]AMINO}-3-OXOPROPANOIC HETSYN 2 RRT ACID FORMUL 2 CA 4(CA 2+) FORMUL 6 ZN ZN 2+ FORMUL 7 RRT C12 H15 N O3 S FORMUL 8 HOH *161(H2 O) HELIX 1 1 ASP E 67 ASN E 89 1 23 HELIX 2 2 PRO E 132 GLY E 135 5 4 HELIX 3 3 GLY E 136 THR E 152 1 17 HELIX 4 4 GLN E 158 ASN E 181 1 24 HELIX 5 5 ASP E 207 GLY E 212 5 6 HELIX 6 6 HIS E 216 ARG E 220 5 5 HELIX 7 7 GLN E 225 VAL E 230 1 6 HELIX 8 8 ASN E 233 GLN E 246 1 14 HELIX 9 9 GLY E 259 TYR E 274 1 16 HELIX 10 10 ASN E 280 GLY E 297 1 18 HELIX 11 11 SER E 300 VAL E 313 1 14 SHEET 1 A 5 ALA E 56 ASP E 57 0 SHEET 2 A 5 TYR E 28 TYR E 29 -1 N TYR E 28 O ASP E 57 SHEET 3 A 5 GLN E 17 TYR E 24 -1 N THR E 23 O TYR E 29 SHEET 4 A 5 THR E 4 ARG E 11 -1 N GLY E 8 O ILE E 20 SHEET 5 A 5 GLN E 61 PHE E 62 1 O PHE E 62 N VAL E 9 SHEET 1 B 3 GLN E 31 ASP E 32 0 SHEET 2 B 3 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 B 3 SER E 53 LEU E 54 -1 O SER E 53 N ASP E 43 SHEET 1 C 5 GLN E 31 ASP E 32 0 SHEET 2 C 5 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 C 5 ILE E 100 VAL E 104 1 O SER E 102 N TYR E 42 SHEET 4 C 5 MET E 120 TYR E 122 1 O TYR E 122 N SER E 103 SHEET 5 C 5 ALA E 113 TRP E 115 -1 N PHE E 114 O VAL E 121 SHEET 1 D 2 GLU E 187 ILE E 188 0 SHEET 2 D 2 ARG E 203 SER E 204 -1 O ARG E 203 N ILE E 188 SHEET 1 E 2 GLY E 247 HIS E 250 0 SHEET 2 E 2 VAL E 253 VAL E 256 -1 O VAL E 253 N HIS E 250 LINK OD1 ASP E 57 CA CA E1003 1555 1555 2.13 LINK OD2 ASP E 57 CA CA E1003 1555 1555 2.46 LINK OD1 ASP E 59 CA CA E1003 1555 1555 2.44 LINK O GLN E 61 CA CA E1003 1555 1555 2.28 LINK OD1 ASP E 138 CA CA E1001 1555 1555 2.38 LINK NE2 HIS E 142 ZN ZN E1005 1555 1555 2.06 LINK NE2 HIS E 146 ZN ZN E1005 1555 1555 2.02 LINK OE1 GLU E 166 ZN ZN E1005 1555 1555 2.17 LINK OE1 GLU E 177 CA CA E1001 1555 1555 2.60 LINK OE2 GLU E 177 CA CA E1001 1555 1555 2.88 LINK OE2 GLU E 177 CA CA E1002 1555 1555 2.24 LINK O ASN E 183 CA CA E1002 1555 1555 2.49 LINK OD2 ASP E 185 CA CA E1001 1555 1555 2.45 LINK OD1 ASP E 185 CA CA E1002 1555 1555 2.54 LINK O GLU E 187 CA CA E1001 1555 1555 2.29 LINK OE1 GLU E 190 CA CA E1001 1555 1555 2.41 LINK OE2 GLU E 190 CA CA E1001 1555 1555 2.42 LINK OE2 GLU E 190 CA CA E1002 1555 1555 2.33 LINK O TYR E 193 CA CA E1004 1555 1555 2.55 LINK OG1 THR E 194 CA CA E1004 1555 1555 2.42 LINK O THR E 194 CA CA E1004 1555 1555 2.48 LINK O ILE E 197 CA CA E1004 1555 1555 2.25 LINK OD1 ASP E 200 CA CA E1004 1555 1555 2.28 LINK O HOH E 346 CA CA E1001 1555 1555 2.65 LINK O HOH E 353 CA CA E1002 1555 1555 2.43 LINK O HOH E 354 CA CA E1004 1555 1555 2.54 LINK O HOH E 419 CA CA E1003 1555 1555 2.51 LINK O HOH E 475 CA CA E1002 1555 1555 1.81 LINK O HOH E 480 CA CA E1004 1555 1555 1.93 LINK O HOH E 482 CA CA E1003 1555 1555 2.24 LINK O HOH E 503 CA CA E1003 1555 1555 2.41 LINK ZN ZN E1005 SG RRT E1006 1555 1555 2.32 CISPEP 1 LEU E 50 PRO E 51 0 1.17 SITE 1 AC1 6 ASP E 138 GLU E 177 ASP E 185 GLU E 187 SITE 2 AC1 6 GLU E 190 HOH E 346 SITE 1 AC2 6 GLU E 177 ASN E 183 ASP E 185 GLU E 190 SITE 2 AC2 6 HOH E 353 HOH E 475 SITE 1 AC3 6 ASP E 57 ASP E 59 GLN E 61 HOH E 419 SITE 2 AC3 6 HOH E 482 HOH E 503 SITE 1 AC4 6 TYR E 193 THR E 194 ILE E 197 ASP E 200 SITE 2 AC4 6 HOH E 354 HOH E 480 SITE 1 AC5 5 HIS E 142 HIS E 146 TYR E 157 GLU E 166 SITE 2 AC5 5 RRT E1006 SITE 1 AC6 12 ASN E 112 ALA E 113 VAL E 139 GLU E 143 SITE 2 AC6 12 HIS E 146 TYR E 157 GLU E 166 ILE E 188 SITE 3 AC6 12 LEU E 202 ARG E 203 HIS E 231 ZN E1005 CRYST1 94.000 94.000 132.000 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010638 0.006142 0.000000 0.00000 SCALE2 0.000000 0.012284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007576 0.00000