HEADER TRANSFERASE 06-APR-05 1ZAO TITLE CRYSTAL STRUCTURE OF A.FULGIDUS RIO2 KINASE COMPLEXED WITH ATP AND TITLE 2 MANGANESE IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIO2 SERINE KINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: RIO2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA-PLYSS-DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST KEYWDS SERINE KINASE, WINGED-HELIX, RIO DOMAIN, ATP-MN COMPLEX, RRNA KEYWDS 2 PROCESSING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.LARONDE-LEBLANC,T.GUSZCZYNSKI,T.COPELAND,A.WLODAWER REVDAT 4 23-AUG-23 1ZAO 1 REMARK LINK REVDAT 3 11-OCT-17 1ZAO 1 REMARK REVDAT 2 24-FEB-09 1ZAO 1 VERSN REVDAT 1 21-JUN-05 1ZAO 0 JRNL AUTH N.LARONDE-LEBLANC,T.GUSZCZYNSKI,T.COPELAND,A.WLODAWER JRNL TITL AUTOPHOSPHORYLATION OF ARCHAEOGLOBUS FULGIDUS RIO2 AND JRNL TITL 2 CRYSTAL STRUCTURES OF ITS NUCLEOTIDE-METAL ION COMPLEXES. JRNL REF FEBS J. V. 272 2800 2005 JRNL REFN ISSN 1742-464X JRNL PMID 15943813 JRNL DOI 10.1111/J.1742-4658.2005.04702.X REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 27131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1361 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1401 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2193 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.48000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 1.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.84000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.938 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2285 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3085 ; 1.414 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 268 ; 5.713 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;35.587 ;23.684 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 409 ;14.071 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.955 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 335 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1702 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1099 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1554 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 244 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 61 ; 0.199 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.172 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1390 ; 1.159 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2156 ; 1.753 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1036 ; 2.892 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 929 ; 4.530 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.78 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99997 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27131 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 63.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03500 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.11400 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1TQI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 900, SODIUM PHOSPHATE, SODIUM REMARK 280 CITRATE , PH 3.78, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.43100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.18250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.43100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.18250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 609 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 128 REMARK 465 PHE A 129 REMARK 465 LYS A 130 REMARK 465 LYS A 135 REMARK 465 ARG A 136 REMARK 465 ASP A 137 REMARK 465 TYR A 138 REMARK 465 GLY A 139 REMARK 465 ASP A 140 REMARK 465 LEU A 141 REMARK 465 HIS A 142 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 26 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 26 CZ3 CH2 REMARK 470 ARG A 41 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 LYS A 133 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 117 CB CYS A 117 SG -0.142 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 218 45.73 -148.45 REMARK 500 ASP A 235 82.69 80.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 284 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 103 OE1 REMARK 620 2 ASP A 235 OD2 175.9 REMARK 620 3 PO4 A 285 O2 106.5 74.8 REMARK 620 4 ATP A 286 O2G 93.4 84.5 156.2 REMARK 620 5 ATP A 286 O1B 97.9 78.5 78.8 85.7 REMARK 620 6 HOH A 315 O 94.5 89.1 100.7 90.6 167.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 283 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 223 OD1 REMARK 620 2 ASP A 235 OD2 85.0 REMARK 620 3 PO4 A 285 O2 104.3 80.8 REMARK 620 4 ATP A 286 O2A 89.5 98.3 166.0 REMARK 620 5 ATP A 286 O1B 166.1 82.3 79.2 86.8 REMARK 620 6 HOH A 615 O 95.5 173.0 92.4 88.7 97.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 286 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 287 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZAR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A.FULGIDUS RIO2 KINASE COMPLEXED WITH ADP AND REMARK 900 MANGANESE IONS DBREF 1ZAO A 1 282 UNP O30245 O30245_ARCFU 1 282 SEQRES 1 A 282 MET ASN ILE ALA GLU LEU TYR GLY LYS MET GLY LYS HIS SEQRES 2 A 282 SER TRP ARG ILE MET ASP ALA ILE PHE LYS ASN LEU TRP SEQRES 3 A 282 ASP TYR GLU TYR VAL PRO LEU GLN LEU ILE SER SER HIS SEQRES 4 A 282 ALA ARG ILE GLY GLU GLU LYS ALA ARG ASN ILE LEU LYS SEQRES 5 A 282 TYR LEU SER ASP LEU ARG VAL VAL GLN ASN ARG GLN LYS SEQRES 6 A 282 ASP TYR GLU GLY SER THR PHE THR PHE ILE GLY LEU SER SEQRES 7 A 282 LEU TYR SER LEU HIS ARG LEU VAL ARG SER GLY LYS VAL SEQRES 8 A 282 ASP ALA ILE GLY LYS LEU MET GLY GLU GLY LYS GLU SER SEQRES 9 A 282 ALA VAL PHE ASN CYS TYR SER GLU LYS PHE GLY GLU CYS SEQRES 10 A 282 VAL VAL LYS PHE HIS LYS VAL GLY HIS THR SER PHE LYS SEQRES 11 A 282 LYS VAL LYS GLU LYS ARG ASP TYR GLY ASP LEU HIS PHE SEQRES 12 A 282 SER VAL LEU ALA ILE ARG SER ALA ARG ASN GLU PHE ARG SEQRES 13 A 282 ALA LEU GLN LYS LEU GLN GLY LEU ALA VAL PRO LYS VAL SEQRES 14 A 282 TYR ALA TRP GLU GLY ASN ALA VAL LEU MET GLU LEU ILE SEQRES 15 A 282 ASP ALA LYS GLU LEU TYR ARG VAL ARG VAL GLU ASN PRO SEQRES 16 A 282 ASP GLU VAL LEU ASP MET ILE LEU GLU GLU VAL ALA LYS SEQRES 17 A 282 PHE TYR HIS ARG GLY ILE VAL HIS GLY ASP LEU SER GLN SEQRES 18 A 282 TYR ASN VAL LEU VAL SER GLU GLU GLY ILE TRP ILE ILE SEQRES 19 A 282 ASP PHE PRO GLN SER VAL GLU VAL GLY GLU GLU GLY TRP SEQRES 20 A 282 ARG GLU ILE LEU GLU ARG ASP VAL ARG ASN ILE ILE THR SEQRES 21 A 282 TYR PHE SER ARG THR TYR ARG THR GLU LYS ASP ILE ASN SEQRES 22 A 282 SER ALA ILE ASP ARG ILE LEU GLN GLU HET MN A 283 1 HET MN A 284 1 HET PO4 A 285 5 HET ATP A 286 31 HET EDO A 287 4 HETNAM MN MANGANESE (II) ION HETNAM PO4 PHOSPHATE ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MN 2(MN 2+) FORMUL 4 PO4 O4 P 3- FORMUL 5 ATP C10 H16 N5 O13 P3 FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *328(H2 O) HELIX 1 1 ASN A 2 LYS A 9 1 8 HELIX 2 2 GLY A 11 LYS A 23 1 13 HELIX 3 3 LEU A 33 ARG A 41 1 9 HELIX 4 4 GLY A 43 LEU A 57 1 15 HELIX 5 5 THR A 73 SER A 88 1 16 HELIX 6 6 PHE A 143 LEU A 161 1 19 HELIX 7 7 TYR A 188 VAL A 190 5 3 HELIX 8 8 ASN A 194 ARG A 212 1 19 HELIX 9 9 GLY A 246 ARG A 267 1 22 HELIX 10 10 ASP A 271 GLU A 282 1 12 SHEET 1 A 3 VAL A 31 PRO A 32 0 SHEET 2 A 3 GLY A 69 PHE A 72 -1 O SER A 70 N VAL A 31 SHEET 3 A 3 VAL A 60 ARG A 63 -1 N GLN A 61 O THR A 71 SHEET 1 B 5 ALA A 93 GLU A 100 0 SHEET 2 B 5 SER A 104 SER A 111 -1 O ASN A 108 N LYS A 96 SHEET 3 B 5 GLY A 115 HIS A 122 -1 O PHE A 121 N ALA A 105 SHEET 4 B 5 ALA A 176 GLU A 180 -1 O MET A 179 N VAL A 118 SHEET 5 B 5 VAL A 169 GLU A 173 -1 N TYR A 170 O LEU A 178 SHEET 1 C 3 LYS A 185 GLU A 186 0 SHEET 2 C 3 VAL A 224 SER A 227 -1 O VAL A 226 N LYS A 185 SHEET 3 C 3 GLY A 230 ILE A 233 -1 O TRP A 232 N LEU A 225 SHEET 1 D 2 ILE A 214 VAL A 215 0 SHEET 2 D 2 VAL A 240 GLU A 241 -1 O VAL A 240 N VAL A 215 LINK OE1 GLU A 103 MN MN A 284 1555 1555 2.32 LINK OD1 ASN A 223 MN MN A 283 1555 1555 2.37 LINK OD2 ASP A 235 MN MN A 283 1555 1555 2.17 LINK OD2 ASP A 235 MN MN A 284 1555 1555 2.40 LINK MN MN A 283 O2 PO4 A 285 1555 1555 2.26 LINK MN MN A 283 O2A ATP A 286 1555 1555 2.26 LINK MN MN A 283 O1B ATP A 286 1555 1555 2.33 LINK MN MN A 283 O HOH A 615 1555 1555 2.18 LINK MN MN A 284 O2 PO4 A 285 1555 1555 2.32 LINK MN MN A 284 O2G ATP A 286 1555 1555 2.12 LINK MN MN A 284 O1B ATP A 286 1555 1555 2.28 LINK MN MN A 284 O HOH A 315 1555 1555 2.35 SITE 1 AC1 6 ASN A 223 ASP A 235 MN A 284 PO4 A 285 SITE 2 AC1 6 ATP A 286 HOH A 615 SITE 1 AC2 6 GLU A 103 ASP A 235 MN A 283 PO4 A 285 SITE 2 AC2 6 ATP A 286 HOH A 315 SITE 1 AC3 8 GLU A 103 ASP A 218 ASN A 223 ASP A 235 SITE 2 AC3 8 MN A 283 MN A 284 ATP A 286 HOH A 309 SITE 1 AC4 24 GLU A 103 SER A 104 VAL A 106 VAL A 118 SITE 2 AC4 24 LYS A 120 HIS A 122 HIS A 126 MET A 179 SITE 3 AC4 24 GLU A 180 ILE A 182 GLU A 186 ASN A 223 SITE 4 AC4 24 ILE A 234 ASP A 235 PRO A 237 MN A 283 SITE 5 AC4 24 MN A 284 PO4 A 285 HOH A 294 HOH A 303 SITE 6 AC4 24 HOH A 337 HOH A 350 HOH A 529 HOH A 586 SITE 1 AC5 5 GLN A 162 GLY A 163 LEU A 164 VAL A 166 SITE 2 AC5 5 LYS A 168 CRYST1 116.862 44.365 62.793 90.00 94.01 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008557 0.000000 0.000600 0.00000 SCALE2 0.000000 0.022540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015964 0.00000