data_1ZBN # _entry.id 1ZBN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ZBN pdb_00001zbn 10.2210/pdb1zbn/pdb RCSB RCSB032536 ? ? WWPDB D_1000032536 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-04-19 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ZBN _pdbx_database_status.recvd_initial_deposition_date 2005-04-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1BIV 'The same RNA complexed with BIV Tat (65-81) arginine-rich domain' unspecified PDB 1MNB 'The same RNA complexed with BIV Tat (68-81) arginine-rich domain' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Calabro, V.' 1 'Daugherty, M.D.' 2 'Frankel, A.D.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'A single intermolecular contact mediates intramolecular stabilization of both RNA and protein.' Proc.Natl.Acad.Sci.Usa 102 6849 6854 2005 PNASA6 US 0027-8424 0040 ? 15857951 10.1073/pnas.0409282102 1 'An RNA-binding chameleon' Mol.Cell 6 1067 1076 2000 MOCEFL US 1097-2765 2168 ? ? ? 2 'Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex' Science 270 1200 1203 1995 SCIEAS US 0036-8075 0038 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Calabro, V.' 1 ? primary 'Daugherty, M.D.' 2 ? primary 'Frankel, A.D.' 3 ? 1 'Smith, C.A.' 4 ? 1 'Calabro, V.' 5 ? 1 'Frankel, A.D.' 6 ? 2 'Puglisi, J.D.' 7 ? 2 'Chen, L.' 8 ? 2 'Blanchard, S.' 9 ? 2 'Frankel, A.D.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'BIV mRNA' 8923.310 1 ? 'A4G, U31C' ? 'A4G, U31C' 2 polymer syn 'JDV tat protein' 2064.493 1 ? ? 'Arginine-rich domain' ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGCUCGUGUAGCUCAUUAGCUCCGAGCC GGCUCGUGUAGCUCAUUAGCUCCGAGCC A ? 2 'polypeptide(L)' no no GRRKKRGTRGKGRKIHY GRRKKRGTRGKGRKIHY B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 U n 1 5 C n 1 6 G n 1 7 U n 1 8 G n 1 9 U n 1 10 A n 1 11 G n 1 12 C n 1 13 U n 1 14 C n 1 15 A n 1 16 U n 1 17 U n 1 18 A n 1 19 G n 1 20 C n 1 21 U n 1 22 C n 1 23 C n 1 24 G n 1 25 A n 1 26 G n 1 27 C n 1 28 C n 2 1 GLY n 2 2 ARG n 2 3 ARG n 2 4 LYS n 2 5 LYS n 2 6 ARG n 2 7 GLY n 2 8 THR n 2 9 ARG n 2 10 GLY n 2 11 LYS n 2 12 GLY n 2 13 ARG n 2 14 LYS n 2 15 ILE n 2 16 HIS n 2 17 TYR n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'This sequence occurs naturally in Bovine immunodeficiency virus (BIV).' 2 1 sample ? ? ? ? ? 'This sequence occurs naturally in Jembrana disease virus (JDV).' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 U 4 4 4 U U A . n A 1 5 C 5 5 5 C C A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 C 12 12 12 C C A . n A 1 13 U 13 13 13 U U A . n A 1 14 C 14 14 14 C C A . n A 1 15 A 15 15 15 A A A . n A 1 16 U 16 16 16 U U A . n A 1 17 U 17 17 17 U U A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n A 1 21 U 21 21 21 U U A . n A 1 22 C 22 22 22 C C A . n A 1 23 C 23 23 23 C C A . n A 1 24 G 24 24 24 G G A . n A 1 25 A 25 25 25 A A A . n A 1 26 G 26 26 26 G G A . n A 1 27 C 27 27 27 C C A . n A 1 28 C 28 28 28 C C A . n B 2 1 GLY 1 1 1 GLY GLY B . n B 2 2 ARG 2 2 2 ARG ARG B . n B 2 3 ARG 3 3 3 ARG ARG B . n B 2 4 LYS 4 4 4 LYS LYS B . n B 2 5 LYS 5 5 5 LYS LYS B . n B 2 6 ARG 6 6 6 ARG ARG B . n B 2 7 GLY 7 7 7 GLY GLY B . n B 2 8 THR 8 8 8 THR THR B . n B 2 9 ARG 9 9 9 ARG ARG B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 LYS 11 11 11 LYS LYS B . n B 2 12 GLY 12 12 12 GLY GLY B . n B 2 13 ARG 13 13 13 ARG ARG B . n B 2 14 LYS 14 14 14 LYS LYS B . n B 2 15 ILE 15 15 15 ILE ILE B . n B 2 16 HIS 16 16 16 HIS HIS B . n B 2 17 TYR 17 17 17 TYR TYR B . n # _exptl.entry_id 1ZBN _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1ZBN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1ZBN _struct.title 'Solution structure of BIV TAR hairpin complexed to JDV Tat arginine-rich motif' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ZBN _struct_keywords.pdbx_keywords 'RNA binding protein/RNA' _struct_keywords.text 'RNA-peptide complex, RNA binding protein-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1ZBN 1ZBN ? ? ? 2 2 PDB 1ZBN 1ZBN ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ZBN A 1 ? 28 ? 1ZBN 1 ? 28 ? 1 28 2 2 1ZBN B 1 ? 17 ? 1ZBN 1 ? 17 ? 1 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 28 N3 ? ? A G 1 A C 28 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog2 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 2 A C 27 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog3 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 26 N1 ? ? A C 3 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 26 O6 ? ? A C 3 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 26 N2 ? ? A C 3 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 25 N1 ? ? A U 4 A A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 25 N6 ? ? A U 4 A A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 5 A G 24 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog9 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 23 N3 ? ? A G 6 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 23 O2 ? ? A G 6 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 23 N4 ? ? A G 6 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 10 N6 ? ? A U 7 A A 10 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog13 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 8 A C 22 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog14 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 21 N3 ? ? A A 10 A U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 21 O4 ? ? A A 10 A U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 11 A C 20 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog17 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 18 N1 ? ? A U 13 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 18 N6 ? ? A U 13 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O4 A U 13 ? ? H61 A A 18 ? ? 1.44 2 1 H61 A A 10 ? ? O4 A U 21 ? ? 1.45 3 1 "H1'" A U 7 ? ? "O5'" A G 8 ? ? 1.50 4 1 "O2'" A C 23 ? ? H8 A G 24 ? ? 1.57 5 2 O4 A U 13 ? ? H61 A A 18 ? ? 1.47 6 2 "HO2'" A G 1 ? ? "O5'" A G 2 ? ? 1.50 7 2 O B GLY 7 ? ? H B ILE 15 ? ? 1.50 8 2 O6 A G 11 ? ? H41 A C 20 ? ? 1.56 9 2 O B GLY 7 ? ? N B ILE 15 ? ? 2.08 10 3 O4 A U 13 ? ? H61 A A 18 ? ? 1.48 11 3 H21 A G 6 ? ? O2 A C 23 ? ? 1.57 12 4 O4 A U 13 ? ? H61 A A 18 ? ? 1.43 13 4 O4 A U 4 ? ? H61 A A 25 ? ? 1.53 14 4 "O2'" A C 23 ? ? H8 A G 24 ? ? 1.54 15 4 "H1'" A U 7 ? ? "O5'" A G 8 ? ? 1.54 16 4 "HO2'" A C 5 ? ? "O5'" A G 6 ? ? 1.59 17 5 O4 A U 13 ? ? H61 A A 18 ? ? 1.39 18 5 "H1'" A U 7 ? ? "O5'" A G 8 ? ? 1.50 19 5 O4 A U 4 ? ? H61 A A 25 ? ? 1.56 20 6 O4 A U 13 ? ? H61 A A 18 ? ? 1.52 21 6 O4 A U 4 ? ? H61 A A 25 ? ? 1.59 22 6 O B GLY 7 ? ? N B ILE 15 ? ? 2.19 23 7 O4 A U 13 ? ? H61 A A 18 ? ? 1.37 24 7 O4 A U 4 ? ? H61 A A 25 ? ? 1.57 25 7 "O2'" A C 23 ? ? H8 A G 24 ? ? 1.58 26 7 O B GLY 7 ? ? N B ILE 15 ? ? 2.15 27 8 O4 A U 13 ? ? H61 A A 18 ? ? 1.42 28 8 "HO2'" A C 23 ? ? "O5'" A G 24 ? ? 1.51 29 8 H61 A A 10 ? ? O4 A U 21 ? ? 1.52 30 8 H21 A G 2 ? ? O2 A C 27 ? ? 1.59 31 9 O4 A U 13 ? ? H61 A A 18 ? ? 1.45 32 9 O4 A U 4 ? ? H61 A A 25 ? ? 1.57 33 9 H21 A G 2 ? ? O2 A C 27 ? ? 1.60 34 10 O4 A U 13 ? ? H61 A A 18 ? ? 1.43 35 10 O4 A U 4 ? ? H61 A A 25 ? ? 1.55 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG B 2 ? ? -58.29 84.19 2 1 ARG B 3 ? ? -177.04 -178.47 3 1 LYS B 5 ? ? 28.66 100.77 4 1 ARG B 6 ? ? -163.60 -58.01 5 1 LYS B 11 ? ? -163.60 43.30 6 1 LYS B 14 ? ? 64.11 171.91 7 1 HIS B 16 ? ? 35.02 90.56 8 2 ARG B 3 ? ? 62.56 139.63 9 2 LYS B 4 ? ? 34.62 38.24 10 2 ARG B 6 ? ? -151.20 -51.55 11 2 LYS B 11 ? ? 113.68 36.32 12 2 LYS B 14 ? ? -36.27 158.50 13 2 HIS B 16 ? ? -152.31 80.61 14 3 ARG B 3 ? ? 179.96 -174.33 15 3 LYS B 5 ? ? 44.84 -156.11 16 3 ARG B 6 ? ? 76.17 -62.54 17 3 LYS B 11 ? ? 105.95 38.24 18 3 LYS B 14 ? ? 47.31 168.63 19 4 ARG B 2 ? ? 72.56 153.49 20 4 ARG B 3 ? ? 94.65 179.01 21 4 LYS B 5 ? ? 24.50 114.75 22 4 ARG B 6 ? ? -178.43 -50.12 23 4 LYS B 11 ? ? -163.39 45.68 24 4 LYS B 14 ? ? 44.64 170.36 25 4 HIS B 16 ? ? 9.86 86.52 26 5 ARG B 2 ? ? 33.07 113.74 27 5 ARG B 3 ? ? 72.19 147.27 28 5 ARG B 6 ? ? -132.05 -49.79 29 5 LYS B 11 ? ? -166.25 45.76 30 5 LYS B 14 ? ? 45.42 169.63 31 5 HIS B 16 ? ? 11.64 86.11 32 6 ARG B 2 ? ? 50.95 126.54 33 6 ARG B 3 ? ? 70.59 132.35 34 6 ARG B 6 ? ? -176.64 -51.18 35 6 ARG B 9 ? ? -96.72 30.13 36 6 LYS B 11 ? ? 104.09 38.66 37 6 LYS B 14 ? ? 64.28 158.72 38 6 HIS B 16 ? ? 21.07 89.36 39 7 ARG B 2 ? ? -9.16 78.55 40 7 ARG B 3 ? ? 173.19 106.74 41 7 LYS B 4 ? ? 38.22 40.47 42 7 ARG B 6 ? ? 179.09 -48.05 43 7 LYS B 11 ? ? 104.11 38.14 44 7 LYS B 14 ? ? 53.91 163.97 45 7 HIS B 16 ? ? -158.46 83.75 46 8 ARG B 3 ? ? 81.09 -145.11 47 8 LYS B 4 ? ? -23.55 -44.45 48 8 LYS B 5 ? ? 10.66 76.38 49 8 ARG B 6 ? ? -135.66 -54.64 50 8 LYS B 11 ? ? 102.89 38.47 51 8 LYS B 14 ? ? 45.37 164.85 52 8 ILE B 15 ? ? -130.69 -59.68 53 8 HIS B 16 ? ? 29.58 96.42 54 9 ARG B 3 ? ? 83.25 -175.31 55 9 LYS B 5 ? ? 41.82 -141.23 56 9 ARG B 6 ? ? 67.13 -68.36 57 9 ARG B 9 ? ? -95.52 30.10 58 9 LYS B 11 ? ? 108.32 37.61 59 9 LYS B 14 ? ? 54.06 171.05 60 9 ILE B 15 ? ? -130.05 -59.12 61 9 HIS B 16 ? ? 39.56 94.88 62 10 ARG B 2 ? ? 60.47 160.50 63 10 ARG B 3 ? ? 82.90 -174.35 64 10 LYS B 5 ? ? 36.39 -149.76 65 10 ARG B 6 ? ? 75.07 -43.61 66 10 LYS B 11 ? ? -163.88 43.49 67 10 LYS B 14 ? ? 56.04 163.03 68 10 ILE B 15 ? ? -108.61 -70.48 69 10 HIS B 16 ? ? 52.30 94.44 # _pdbx_nmr_ensemble.entry_id 1ZBN _pdbx_nmr_ensemble.conformers_calculated_total_number 30 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1ZBN _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.5mM RNA, 1.5mM peptide, 90% H2O, 10% D2O' '90% H2O/10% D2O' 2 '1.5mM RNA, 1.5mM peptide, 100% D2O' '100% D2O' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 290 ambient 6.5 '50mM NaCl, 10mM sodium phosphate' . K 2 285 ambient 6.5 '50mM NaCl, 10mM sodium phosphate' . K 3 300 ambient 6.5 '50mM NaCl, 10mM sodium phosphate' . K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 DQF-COSY 2 2 1 '2D TOCSY' 2 3 1 '2D NOESY' 2 4 3 '2D NOESY' 2 5 2 '2D NOESY' 1 6 1 '2D TOCSY' 1 7 1 DQF-COSY 1 # _pdbx_nmr_details.entry_id 1ZBN _pdbx_nmr_details.text 'This structure was determined using standard 2D homonuclear techniques.' # _pdbx_nmr_refine.entry_id 1ZBN _pdbx_nmr_refine.method 'distance geometry and restrained molecular dynamics' _pdbx_nmr_refine.details ;Structures were calculated beginning with 1,000 random structures and incrementally adding distance constraints in four iterations. The final 30 structures with the lowest number of violations were subjected to RMD. The structures are based on a total of 700 distance constraints, 61 dihedral angle restraints. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal 'structure solution' CYANA 1.x Guentert 1 refinement CNS 1.1 Brunger 2 processing NMRPipe NA Delaglio 3 'data analysis' Sparky 3 Goddard 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ARG N N N N 38 ARG CA C N S 39 ARG C C N N 40 ARG O O N N 41 ARG CB C N N 42 ARG CG C N N 43 ARG CD C N N 44 ARG NE N N N 45 ARG CZ C N N 46 ARG NH1 N N N 47 ARG NH2 N N N 48 ARG OXT O N N 49 ARG H H N N 50 ARG H2 H N N 51 ARG HA H N N 52 ARG HB2 H N N 53 ARG HB3 H N N 54 ARG HG2 H N N 55 ARG HG3 H N N 56 ARG HD2 H N N 57 ARG HD3 H N N 58 ARG HE H N N 59 ARG HH11 H N N 60 ARG HH12 H N N 61 ARG HH21 H N N 62 ARG HH22 H N N 63 ARG HXT H N N 64 C OP3 O N N 65 C P P N N 66 C OP1 O N N 67 C OP2 O N N 68 C "O5'" O N N 69 C "C5'" C N N 70 C "C4'" C N R 71 C "O4'" O N N 72 C "C3'" C N S 73 C "O3'" O N N 74 C "C2'" C N R 75 C "O2'" O N N 76 C "C1'" C N R 77 C N1 N N N 78 C C2 C N N 79 C O2 O N N 80 C N3 N N N 81 C C4 C N N 82 C N4 N N N 83 C C5 C N N 84 C C6 C N N 85 C HOP3 H N N 86 C HOP2 H N N 87 C "H5'" H N N 88 C "H5''" H N N 89 C "H4'" H N N 90 C "H3'" H N N 91 C "HO3'" H N N 92 C "H2'" H N N 93 C "HO2'" H N N 94 C "H1'" H N N 95 C H41 H N N 96 C H42 H N N 97 C H5 H N N 98 C H6 H N N 99 G OP3 O N N 100 G P P N N 101 G OP1 O N N 102 G OP2 O N N 103 G "O5'" O N N 104 G "C5'" C N N 105 G "C4'" C N R 106 G "O4'" O N N 107 G "C3'" C N S 108 G "O3'" O N N 109 G "C2'" C N R 110 G "O2'" O N N 111 G "C1'" C N R 112 G N9 N Y N 113 G C8 C Y N 114 G N7 N Y N 115 G C5 C Y N 116 G C6 C N N 117 G O6 O N N 118 G N1 N N N 119 G C2 C N N 120 G N2 N N N 121 G N3 N N N 122 G C4 C Y N 123 G HOP3 H N N 124 G HOP2 H N N 125 G "H5'" H N N 126 G "H5''" H N N 127 G "H4'" H N N 128 G "H3'" H N N 129 G "HO3'" H N N 130 G "H2'" H N N 131 G "HO2'" H N N 132 G "H1'" H N N 133 G H8 H N N 134 G H1 H N N 135 G H21 H N N 136 G H22 H N N 137 GLY N N N N 138 GLY CA C N N 139 GLY C C N N 140 GLY O O N N 141 GLY OXT O N N 142 GLY H H N N 143 GLY H2 H N N 144 GLY HA2 H N N 145 GLY HA3 H N N 146 GLY HXT H N N 147 HIS N N N N 148 HIS CA C N S 149 HIS C C N N 150 HIS O O N N 151 HIS CB C N N 152 HIS CG C Y N 153 HIS ND1 N Y N 154 HIS CD2 C Y N 155 HIS CE1 C Y N 156 HIS NE2 N Y N 157 HIS OXT O N N 158 HIS H H N N 159 HIS H2 H N N 160 HIS HA H N N 161 HIS HB2 H N N 162 HIS HB3 H N N 163 HIS HD1 H N N 164 HIS HD2 H N N 165 HIS HE1 H N N 166 HIS HE2 H N N 167 HIS HXT H N N 168 ILE N N N N 169 ILE CA C N S 170 ILE C C N N 171 ILE O O N N 172 ILE CB C N S 173 ILE CG1 C N N 174 ILE CG2 C N N 175 ILE CD1 C N N 176 ILE OXT O N N 177 ILE H H N N 178 ILE H2 H N N 179 ILE HA H N N 180 ILE HB H N N 181 ILE HG12 H N N 182 ILE HG13 H N N 183 ILE HG21 H N N 184 ILE HG22 H N N 185 ILE HG23 H N N 186 ILE HD11 H N N 187 ILE HD12 H N N 188 ILE HD13 H N N 189 ILE HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 THR N N N N 216 THR CA C N S 217 THR C C N N 218 THR O O N N 219 THR CB C N R 220 THR OG1 O N N 221 THR CG2 C N N 222 THR OXT O N N 223 THR H H N N 224 THR H2 H N N 225 THR HA H N N 226 THR HB H N N 227 THR HG1 H N N 228 THR HG21 H N N 229 THR HG22 H N N 230 THR HG23 H N N 231 THR HXT H N N 232 TYR N N N N 233 TYR CA C N S 234 TYR C C N N 235 TYR O O N N 236 TYR CB C N N 237 TYR CG C Y N 238 TYR CD1 C Y N 239 TYR CD2 C Y N 240 TYR CE1 C Y N 241 TYR CE2 C Y N 242 TYR CZ C Y N 243 TYR OH O N N 244 TYR OXT O N N 245 TYR H H N N 246 TYR H2 H N N 247 TYR HA H N N 248 TYR HB2 H N N 249 TYR HB3 H N N 250 TYR HD1 H N N 251 TYR HD2 H N N 252 TYR HE1 H N N 253 TYR HE2 H N N 254 TYR HH H N N 255 TYR HXT H N N 256 U OP3 O N N 257 U P P N N 258 U OP1 O N N 259 U OP2 O N N 260 U "O5'" O N N 261 U "C5'" C N N 262 U "C4'" C N R 263 U "O4'" O N N 264 U "C3'" C N S 265 U "O3'" O N N 266 U "C2'" C N R 267 U "O2'" O N N 268 U "C1'" C N R 269 U N1 N N N 270 U C2 C N N 271 U O2 O N N 272 U N3 N N N 273 U C4 C N N 274 U O4 O N N 275 U C5 C N N 276 U C6 C N N 277 U HOP3 H N N 278 U HOP2 H N N 279 U "H5'" H N N 280 U "H5''" H N N 281 U "H4'" H N N 282 U "H3'" H N N 283 U "HO3'" H N N 284 U "H2'" H N N 285 U "HO2'" H N N 286 U "H1'" H N N 287 U H3 H N N 288 U H5 H N N 289 U H6 H N N 290 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ARG N CA sing N N 40 ARG N H sing N N 41 ARG N H2 sing N N 42 ARG CA C sing N N 43 ARG CA CB sing N N 44 ARG CA HA sing N N 45 ARG C O doub N N 46 ARG C OXT sing N N 47 ARG CB CG sing N N 48 ARG CB HB2 sing N N 49 ARG CB HB3 sing N N 50 ARG CG CD sing N N 51 ARG CG HG2 sing N N 52 ARG CG HG3 sing N N 53 ARG CD NE sing N N 54 ARG CD HD2 sing N N 55 ARG CD HD3 sing N N 56 ARG NE CZ sing N N 57 ARG NE HE sing N N 58 ARG CZ NH1 sing N N 59 ARG CZ NH2 doub N N 60 ARG NH1 HH11 sing N N 61 ARG NH1 HH12 sing N N 62 ARG NH2 HH21 sing N N 63 ARG NH2 HH22 sing N N 64 ARG OXT HXT sing N N 65 C OP3 P sing N N 66 C OP3 HOP3 sing N N 67 C P OP1 doub N N 68 C P OP2 sing N N 69 C P "O5'" sing N N 70 C OP2 HOP2 sing N N 71 C "O5'" "C5'" sing N N 72 C "C5'" "C4'" sing N N 73 C "C5'" "H5'" sing N N 74 C "C5'" "H5''" sing N N 75 C "C4'" "O4'" sing N N 76 C "C4'" "C3'" sing N N 77 C "C4'" "H4'" sing N N 78 C "O4'" "C1'" sing N N 79 C "C3'" "O3'" sing N N 80 C "C3'" "C2'" sing N N 81 C "C3'" "H3'" sing N N 82 C "O3'" "HO3'" sing N N 83 C "C2'" "O2'" sing N N 84 C "C2'" "C1'" sing N N 85 C "C2'" "H2'" sing N N 86 C "O2'" "HO2'" sing N N 87 C "C1'" N1 sing N N 88 C "C1'" "H1'" sing N N 89 C N1 C2 sing N N 90 C N1 C6 sing N N 91 C C2 O2 doub N N 92 C C2 N3 sing N N 93 C N3 C4 doub N N 94 C C4 N4 sing N N 95 C C4 C5 sing N N 96 C N4 H41 sing N N 97 C N4 H42 sing N N 98 C C5 C6 doub N N 99 C C5 H5 sing N N 100 C C6 H6 sing N N 101 G OP3 P sing N N 102 G OP3 HOP3 sing N N 103 G P OP1 doub N N 104 G P OP2 sing N N 105 G P "O5'" sing N N 106 G OP2 HOP2 sing N N 107 G "O5'" "C5'" sing N N 108 G "C5'" "C4'" sing N N 109 G "C5'" "H5'" sing N N 110 G "C5'" "H5''" sing N N 111 G "C4'" "O4'" sing N N 112 G "C4'" "C3'" sing N N 113 G "C4'" "H4'" sing N N 114 G "O4'" "C1'" sing N N 115 G "C3'" "O3'" sing N N 116 G "C3'" "C2'" sing N N 117 G "C3'" "H3'" sing N N 118 G "O3'" "HO3'" sing N N 119 G "C2'" "O2'" sing N N 120 G "C2'" "C1'" sing N N 121 G "C2'" "H2'" sing N N 122 G "O2'" "HO2'" sing N N 123 G "C1'" N9 sing N N 124 G "C1'" "H1'" sing N N 125 G N9 C8 sing Y N 126 G N9 C4 sing Y N 127 G C8 N7 doub Y N 128 G C8 H8 sing N N 129 G N7 C5 sing Y N 130 G C5 C6 sing N N 131 G C5 C4 doub Y N 132 G C6 O6 doub N N 133 G C6 N1 sing N N 134 G N1 C2 sing N N 135 G N1 H1 sing N N 136 G C2 N2 sing N N 137 G C2 N3 doub N N 138 G N2 H21 sing N N 139 G N2 H22 sing N N 140 G N3 C4 sing N N 141 GLY N CA sing N N 142 GLY N H sing N N 143 GLY N H2 sing N N 144 GLY CA C sing N N 145 GLY CA HA2 sing N N 146 GLY CA HA3 sing N N 147 GLY C O doub N N 148 GLY C OXT sing N N 149 GLY OXT HXT sing N N 150 HIS N CA sing N N 151 HIS N H sing N N 152 HIS N H2 sing N N 153 HIS CA C sing N N 154 HIS CA CB sing N N 155 HIS CA HA sing N N 156 HIS C O doub N N 157 HIS C OXT sing N N 158 HIS CB CG sing N N 159 HIS CB HB2 sing N N 160 HIS CB HB3 sing N N 161 HIS CG ND1 sing Y N 162 HIS CG CD2 doub Y N 163 HIS ND1 CE1 doub Y N 164 HIS ND1 HD1 sing N N 165 HIS CD2 NE2 sing Y N 166 HIS CD2 HD2 sing N N 167 HIS CE1 NE2 sing Y N 168 HIS CE1 HE1 sing N N 169 HIS NE2 HE2 sing N N 170 HIS OXT HXT sing N N 171 ILE N CA sing N N 172 ILE N H sing N N 173 ILE N H2 sing N N 174 ILE CA C sing N N 175 ILE CA CB sing N N 176 ILE CA HA sing N N 177 ILE C O doub N N 178 ILE C OXT sing N N 179 ILE CB CG1 sing N N 180 ILE CB CG2 sing N N 181 ILE CB HB sing N N 182 ILE CG1 CD1 sing N N 183 ILE CG1 HG12 sing N N 184 ILE CG1 HG13 sing N N 185 ILE CG2 HG21 sing N N 186 ILE CG2 HG22 sing N N 187 ILE CG2 HG23 sing N N 188 ILE CD1 HD11 sing N N 189 ILE CD1 HD12 sing N N 190 ILE CD1 HD13 sing N N 191 ILE OXT HXT sing N N 192 LYS N CA sing N N 193 LYS N H sing N N 194 LYS N H2 sing N N 195 LYS CA C sing N N 196 LYS CA CB sing N N 197 LYS CA HA sing N N 198 LYS C O doub N N 199 LYS C OXT sing N N 200 LYS CB CG sing N N 201 LYS CB HB2 sing N N 202 LYS CB HB3 sing N N 203 LYS CG CD sing N N 204 LYS CG HG2 sing N N 205 LYS CG HG3 sing N N 206 LYS CD CE sing N N 207 LYS CD HD2 sing N N 208 LYS CD HD3 sing N N 209 LYS CE NZ sing N N 210 LYS CE HE2 sing N N 211 LYS CE HE3 sing N N 212 LYS NZ HZ1 sing N N 213 LYS NZ HZ2 sing N N 214 LYS NZ HZ3 sing N N 215 LYS OXT HXT sing N N 216 THR N CA sing N N 217 THR N H sing N N 218 THR N H2 sing N N 219 THR CA C sing N N 220 THR CA CB sing N N 221 THR CA HA sing N N 222 THR C O doub N N 223 THR C OXT sing N N 224 THR CB OG1 sing N N 225 THR CB CG2 sing N N 226 THR CB HB sing N N 227 THR OG1 HG1 sing N N 228 THR CG2 HG21 sing N N 229 THR CG2 HG22 sing N N 230 THR CG2 HG23 sing N N 231 THR OXT HXT sing N N 232 TYR N CA sing N N 233 TYR N H sing N N 234 TYR N H2 sing N N 235 TYR CA C sing N N 236 TYR CA CB sing N N 237 TYR CA HA sing N N 238 TYR C O doub N N 239 TYR C OXT sing N N 240 TYR CB CG sing N N 241 TYR CB HB2 sing N N 242 TYR CB HB3 sing N N 243 TYR CG CD1 doub Y N 244 TYR CG CD2 sing Y N 245 TYR CD1 CE1 sing Y N 246 TYR CD1 HD1 sing N N 247 TYR CD2 CE2 doub Y N 248 TYR CD2 HD2 sing N N 249 TYR CE1 CZ doub Y N 250 TYR CE1 HE1 sing N N 251 TYR CE2 CZ sing Y N 252 TYR CE2 HE2 sing N N 253 TYR CZ OH sing N N 254 TYR OH HH sing N N 255 TYR OXT HXT sing N N 256 U OP3 P sing N N 257 U OP3 HOP3 sing N N 258 U P OP1 doub N N 259 U P OP2 sing N N 260 U P "O5'" sing N N 261 U OP2 HOP2 sing N N 262 U "O5'" "C5'" sing N N 263 U "C5'" "C4'" sing N N 264 U "C5'" "H5'" sing N N 265 U "C5'" "H5''" sing N N 266 U "C4'" "O4'" sing N N 267 U "C4'" "C3'" sing N N 268 U "C4'" "H4'" sing N N 269 U "O4'" "C1'" sing N N 270 U "C3'" "O3'" sing N N 271 U "C3'" "C2'" sing N N 272 U "C3'" "H3'" sing N N 273 U "O3'" "HO3'" sing N N 274 U "C2'" "O2'" sing N N 275 U "C2'" "C1'" sing N N 276 U "C2'" "H2'" sing N N 277 U "O2'" "HO2'" sing N N 278 U "C1'" N1 sing N N 279 U "C1'" "H1'" sing N N 280 U N1 C2 sing N N 281 U N1 C6 sing N N 282 U C2 O2 doub N N 283 U C2 N3 sing N N 284 U N3 C4 sing N N 285 U N3 H3 sing N N 286 U C4 O4 doub N N 287 U C4 C5 sing N N 288 U C5 C6 doub N N 289 U C5 H5 sing N N 290 U C6 H6 sing N N 291 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1ZBN 'double helix' 1ZBN 'a-form double helix' 1ZBN 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 28 1_555 0.800 -0.023 0.151 2.895 -1.117 -17.184 1 A_G1:C28_A A 1 ? A 28 ? ? ? 1 A G 2 1_555 A C 27 1_555 0.893 0.068 0.077 1.042 -0.982 -15.296 2 A_G2:C27_A A 2 ? A 27 ? ? ? 1 A C 3 1_555 A G 26 1_555 -0.700 0.141 -0.120 -1.425 -0.670 1.541 3 A_C3:G26_A A 3 ? A 26 ? 19 1 1 A U 4 1_555 A A 25 1_555 0.341 0.204 -0.015 1.308 -1.631 -27.470 4 A_U4:A25_A A 4 ? A 25 ? 20 1 1 A C 5 1_555 A G 24 1_555 1.331 -0.653 -0.004 4.830 1.896 -15.645 5 A_C5:G24_A A 5 ? A 24 ? ? 1 1 A G 6 1_555 A C 23 1_555 0.485 0.070 0.037 0.284 -4.434 4.583 6 A_G6:C23_A A 6 ? A 23 ? 19 1 1 A G 8 1_555 A C 22 1_555 0.077 0.238 -0.059 -0.093 2.062 -10.170 7 A_G8:C22_A A 8 ? A 22 ? ? ? 1 A A 10 1_555 A U 21 1_555 0.603 -0.194 -0.113 3.543 1.785 -11.870 8 A_A10:U21_A A 10 ? A 21 ? 20 1 1 A G 11 1_555 A C 20 1_555 0.787 -0.084 -0.458 -8.171 3.455 -18.634 9 A_G11:C20_A A 11 ? A 20 ? ? ? 1 A C 12 1_555 A G 19 1_555 -0.053 0.271 -0.071 -4.127 -1.346 -6.574 10 A_C12:G19_A A 12 ? A 19 ? 19 1 1 A U 13 1_555 A A 18 1_555 0.012 -0.224 -0.200 3.537 3.086 -13.646 11 A_U13:A18_A A 13 ? A 18 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 28 1_555 A G 2 1_555 A C 27 1_555 3.320 -0.992 1.507 12.612 160.230 54.817 -0.977 -1.641 0.057 85.267 -6.712 162.907 1 AA_G1G2:C27C28_AA A 1 ? A 28 ? A 2 ? A 27 ? 1 A G 2 1_555 A C 27 1_555 A C 3 1_555 A G 26 1_555 0.019 0.358 4.432 -0.484 1.728 13.956 -0.758 -0.701 4.439 7.074 1.983 14.070 2 AA_G2C3:G26C27_AA A 2 ? A 27 ? A 3 ? A 26 ? 1 A C 3 1_555 A G 26 1_555 A U 4 1_555 A A 25 1_555 -0.887 -1.126 3.754 -0.750 9.792 28.101 -4.445 1.556 3.210 19.431 1.488 29.735 3 AA_C3U4:A25G26_AA A 3 ? A 26 ? A 4 ? A 25 ? 1 A U 4 1_555 A A 25 1_555 A C 5 1_555 A G 24 1_555 2.544 -1.376 2.785 8.177 10.044 45.216 -2.455 -2.602 2.829 12.758 -10.385 46.940 4 AA_U4C5:G24A25_AA A 4 ? A 25 ? A 5 ? A 24 ? 1 A C 5 1_555 A G 24 1_555 A G 6 1_555 A C 23 1_555 2.849 -0.340 2.776 19.479 18.285 34.947 -2.294 -1.867 3.330 26.240 -27.952 43.735 5 AA_C5G6:C23G24_AA A 5 ? A 24 ? A 6 ? A 23 ? 1 A G 6 1_555 A C 23 1_555 A G 8 1_555 A C 22 1_555 -3.408 -0.763 2.929 -8.968 42.486 49.862 -2.356 2.815 2.266 42.433 8.957 65.193 6 AA_G6G8:C22C23_AA A 6 ? A 23 ? A 8 ? A 22 ? 1 A G 8 1_555 A C 22 1_555 A A 10 1_555 A U 21 1_555 -1.184 -2.156 4.084 0.185 -27.051 37.013 0.737 1.554 4.578 -37.157 -0.254 45.564 7 AA_G8A10:U21C22_AA A 8 ? A 22 ? A 10 ? A 21 ? 1 A A 10 1_555 A U 21 1_555 A G 11 1_555 A C 20 1_555 -0.951 -2.813 3.868 8.252 39.392 30.873 -5.510 1.580 0.122 52.857 -11.073 50.331 8 AA_A10G11:C20U21_AA A 10 ? A 21 ? A 11 ? A 20 ? 1 A G 11 1_555 A C 20 1_555 A C 12 1_555 A G 19 1_555 -0.478 -1.499 3.949 -5.397 -4.305 29.580 -1.778 -0.446 4.141 -8.290 10.394 30.357 9 AA_G11C12:G19C20_AA A 11 ? A 20 ? A 12 ? A 19 ? 1 A C 12 1_555 A G 19 1_555 A U 13 1_555 A A 18 1_555 -0.371 -0.980 3.224 6.542 30.907 30.550 -3.913 1.048 1.552 46.019 -9.740 43.674 10 AA_C12U13:A18G19_AA A 12 ? A 19 ? A 13 ? A 18 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model UNITY _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 1ZBN _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_